miRTarBase - #MIRT504547


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF417   
Synonyms -
Description zinc finger protein 417
Transcript NM_152475   
Expression
Putative miRNA Targets on ZNF417
3'UTR of ZNF417
(miRNA target sites are highlighted)		 
>ZNF417|NM_152475|3'UTR
   1 GTGCAGTGAATATGGGAAATCGTTTGCTGAAACATCCCGTCTCATTAAACACAGGAGAGTTCATACTGGAGAAAGGCCTT
  81 ATGAGTGCTGTCAATCTGGGAAACATCAGAATGTCTGCTCTCCTTGGTCTTAAGAGACTTCGCATTGGAACGGAGTCTCA
 161 TTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACTTGGGCCTCCCAGGTTCAAGTGATTCTCCT
 241 ACCTCAGCCTCCCAAGGAGCTGAGATTACGAGTACACCACACCATGCCCGGCCAAATACTTGGTTTTCAGTACCACAAGA
 321 GCTATGAGCTGGTTATCCACTTCATGTGGAATCATAAGTGTCCCCAAGTGACAATACGTATAGATTGCTGGGCAGTGAAA
 401 CAGTTAAGATGTCACCGTAGCTTGCTTTCTATTCAACATCTTTCTAAGATTACCTTACTATTTCTTTTGTTCCAAGTTTG
 481 TATTTCCTCAGAGTTCTCACATATGGAAAGGATACACACTTTGTAGAAACAAGAACTTTATGTTATCCAAGTTCTGGGAT
 561 AGCCATGAGCTCCAATTACCTCAGAGCTCCGAGTCCTCTACTCAGTACCCGTTGAGATTTATGTGTTCTGAGGCTTTTGT
 641 CTTCTAGCTACTTACTTCATTCTCCATGGGTAACGTCATTCATCCACATTAACTAATTTCCTCACTCCAAGCTCTTTTCT
 721 GGAGATAATCTCCAGTCCCTGTGCAGACACTGTCATTGCACTTTCTGCTGAAATGGTAGTTTCTTGCCAGCAAGGTGAGA
 801 TTATGGAATCCAGAATCTTTTTTCAGGGGCCACATGCCCATTTCCCCACTTGCATGAATGTCGACACTGTAGCCACAGTT
 881 TTGGCCGTAAATGTGAATTTGGCAAGTAACCACTGTTCCCAAATTGGGAAATGTCCCAGTCAGAAGAAGATTATCTGGGA
 961 CACTGATACTGACAGGGAGATGGGACATTCTGAGGGACCCGGAGGCAGGGAGCCACCTCCTCAGCTTCCCTGAGGGCTGC
1041 CTAGAATCTCTCTTGTTTCCTCTCACTCTGAATTATTCTTCCTCTCATGACTGACCAAACACATGGAACCTCACAAAGTC
1121 CATTTTAAGAGCTTTATCTTGTGAAGTGAAGAACATGAAGATAGTTTGAATCAAAGTTATTGAGTGGACACTTAATGTCT
1201 TTATAACATTTTTTACATATGTGTTTGTGTTTTTTGGGGAGCATAATTTGCAAATGGAATATCTGTTATTTTACTAAGAT
1281 GCTTCATGGATACAAGAGTTAAAACTTCCTGTCCCATTTAGTGAAACAAAAGGTTAAGAAATGTGGATAAAGCTTGTAAG
1361 TTAGAAATGGCAAGATAATCAGCTATATGAAGAATCTCAGCTGGGTGTTTTGGCTCAGGCCTGTAATCCCAGCACTTTGG
1441 GAGGCTGAGGTGGGTGGCTTACAAGGTCAGGAGTTCAAGACCACCCTGGACAATATGGTGAAACCCTGTCTCTACTAAAA
1521 ATACAAAAATTACCCAAGCATAGTGGTGGGTGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATTCGTTAAA
1601 CCTGGGAGGCATAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGTGACAGAGCGAGACTCCGTCTCAAA
1681 AAAAAAAAAAAAAAAAAAAAAAAATCTCAATCCCTAAATGTTACCTTTTATAACAGCAGGTTATATGGGCTTAGATATTA
1761 TCCCTAAATTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGAAGTGCAATGGCATGGTCTC
1841 GGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGCCTATAGGTTCCC
1921 TCCACCACGCCCACCTAATTTTTGTATTTTTAGTAGAGATGGGCTTTCACTACGTTAGCCAGGCTGGTCTCAAACTTGTG
2001 ACCTCATGATCCACCCCCCTCAGCCTCCTAAAGTGCTGGGATTACAGGCATCTGCCACGGCACTCGGCTTATCCCTAGAA
2081 ATCCTATGATAGCATGATGTATAGGCACCTAAAGGCATGGCACTTGAGAAATGTGAATAAGATTGTAAGTTACAAATAGC
2161 AAGGTACAGTCAGATGTTAACAGTCTCAGCCCCTAAATGTCACCTTGTATTACAGCATGTTATATAAGCACATACAGGCA
2241 CATACATGAAATAGTGATACTTCATTCTCAGTAATATTTTTCATCCTTCTCACTGGAAAGATCTTTGATGATTTTTAATC
2321 AACATAGGAGTTTCAATGATATCTAGAAGTTTAAAAGGGCTCGTTCAAACAAATTATGACCATACACCCTGAAGAGTATG
2401 TGTCTGTCTCTTGTGGTGTAAATTTTTATTTTATTACACCCAATTATGTTCCCACAAAACCTTTATAATTGGGAAATTAA
2481 GGAGCCTTCCTCGGAAATGGAGGTTGCAATCAGCTGAGATGGTACCACTGCACTCTAGCCTGGGCAAAAGAGCAAGGCCC
2561 TGCCTCAAAAAAAACAAAACTTTTTTCTTCATAAACTACAGTTTATATAGGCAAAACTTTCAGTACTAAGCAATTTTAGT
2641 CTCTGCAGGCTCTTGTCTTGAATTAATACAACTTTTGTTAATTCTCTTATGAAGTTAAATCTTCCTGCTTGTATGCAACT
2721 TATATGTTGAAATTTTTTTGTACAAAAGATTCATACATCTTTCCTGTTTGAAATTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
 164 - 186 157.00 -19.40
2 
miRNA  3' ucGGUCGGU-UGAGUGUCACGUcu 5'
            :|| ||| :|| | ||||||  
Target 5' tgTCACCCAGGCTGA-AGTGCAat 3'
 1807 - 1829 140.00 -14.50
3 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|||||  || | ||||| | 
Target 5' ccTCAGCCTCCT-AAAGTGCTGg 3'
 2018 - 2039 132.00 -19.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26668717 12 COSMIC
COSN30455188 21 COSMIC
COSN30485290 37 COSMIC
COSN31503019 38 COSMIC
COSN165997 44 COSMIC
COSN30530017 53 COSMIC
COSN31585181 54 COSMIC
COSN28576733 77 COSMIC
COSN19666390 88 COSMIC
COSN30459572 115 COSMIC
COSN30153315 122 COSMIC
COSN31961608 122 COSMIC
COSN30461190 141 COSMIC
COSN30144912 155 COSMIC
COSN13839983 193 COSMIC
COSN30177858 202 COSMIC
COSN4623421 642 COSMIC
COSN28705663 738 COSMIC
COSN20116167 813 COSMIC
COSN31557209 829 COSMIC
COSN31521405 884 COSMIC
COSN1219400 920 COSMIC
COSN30716822 936 COSMIC
COSN24387581 976 COSMIC
COSN30733616 1001 COSMIC
COSN22302482 1022 COSMIC
COSN1219399 1052 COSMIC
COSN30170756 1068 COSMIC
COSN31608210 1078 COSMIC
COSN6553066 1203 COSMIC
COSN6553065 1205 COSMIC
COSN21024082 1483 COSMIC
COSN31961607 1506 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs371120747 1 dbSNP
rs777504466 3 dbSNP
rs574942063 5 dbSNP
rs377561890 6 dbSNP
rs1416459022 8 dbSNP
rs1488922289 12 dbSNP
rs1193040082 15 dbSNP
rs752496955 21 dbSNP
rs199772848 22 dbSNP
rs750524820 25 dbSNP
rs544920225 32 dbSNP
rs1264769819 33 dbSNP
rs1193721093 34 dbSNP
rs575846989 38 dbSNP
rs373416762 39 dbSNP
rs981112407 41 dbSNP
rs1211992132 43 dbSNP
rs10415951 44 dbSNP
rs763338679 47 dbSNP
rs775802784 48 dbSNP
rs770253934 50 dbSNP
rs971745089 53 dbSNP
rs961681721 56 dbSNP
rs372259519 57 dbSNP
rs1268620055 64 dbSNP
rs1019111461 66 dbSNP
rs1227026970 68 dbSNP
rs1008623207 72 dbSNP
rs10414704 77 dbSNP
rs553473360 78 dbSNP
rs1204005048 80 dbSNP
rs1439185687 82 dbSNP
rs1000751349 85 dbSNP
rs533990856 87 dbSNP
rs1442887950 90 dbSNP
rs568277098 98 dbSNP
rs548059639 102 dbSNP
rs1041982809 103 dbSNP
rs1180795555 107 dbSNP
rs946039665 110 dbSNP
rs1469748551 113 dbSNP
rs1156882738 115 dbSNP
rs895782306 119 dbSNP
rs377026254 120 dbSNP
rs372092250 125 dbSNP
rs1450157276 127 dbSNP
rs927357247 135 dbSNP
rs980654279 139 dbSNP
rs182277496 141 dbSNP
rs1347788772 142 dbSNP
rs1263035200 143 dbSNP
rs1460288575 144 dbSNP
rs1200905916 148 dbSNP
rs1251583606 149 dbSNP
rs1252230843 151 dbSNP
rs1179759004 152 dbSNP
rs930476342 156 dbSNP
rs920547334 159 dbSNP
rs1428477096 160 dbSNP
rs1468099427 167 dbSNP
rs531955000 170 dbSNP
rs559832973 176 dbSNP
rs961705333 182 dbSNP
rs1326305370 186 dbSNP
rs768433550 193 dbSNP
rs1404993209 202 dbSNP
rs539974143 203 dbSNP
rs953177439 204 dbSNP
rs1220866843 207 dbSNP
rs746607985 209 dbSNP
rs1029156888 214 dbSNP
rs779927702 217 dbSNP
rs1305915550 230 dbSNP
rs529733009 246 dbSNP
rs968839062 252 dbSNP
rs1198786909 254 dbSNP
rs12459655 260 dbSNP
rs561577896 265 dbSNP
rs1020552114 269 dbSNP
rs113103514 270 dbSNP
rs895818775 276 dbSNP
rs1057162287 277 dbSNP
rs1461275423 282 dbSNP
rs1165828605 283 dbSNP
rs1392423088 285 dbSNP
rs1445053283 288 dbSNP
rs1001924668 289 dbSNP
rs748374040 290 dbSNP
rs905988731 303 dbSNP
rs1408888320 304 dbSNP
rs1048951519 309 dbSNP
rs1326266204 311 dbSNP
rs755422680 312 dbSNP
rs1225660996 324 dbSNP
rs1267527557 327 dbSNP
rs930487734 332 dbSNP
rs745651990 335 dbSNP
rs1175137104 337 dbSNP
rs559408937 343 dbSNP
rs1489845567 344 dbSNP
rs1394297842 345 dbSNP
rs1179141863 353 dbSNP
rs1427768529 354 dbSNP
rs1190736689 355 dbSNP
rs117347446 356 dbSNP
rs1444799014 357 dbSNP
rs1162414567 359 dbSNP
rs763301685 361 dbSNP
rs1363115714 363 dbSNP
rs911777267 374 dbSNP
rs987193200 377 dbSNP
rs953153410 378 dbSNP
rs921709645 384 dbSNP
rs1315209181 388 dbSNP
rs978468842 391 dbSNP
rs559245620 395 dbSNP
rs1020436006 403 dbSNP
rs1355996777 416 dbSNP
rs62126273 421 dbSNP
rs1282734316 427 dbSNP
rs1010397175 431 dbSNP
rs1209068581 434 dbSNP
rs545437915 443 dbSNP
rs1287240633 446 dbSNP
rs1461510116 446 dbSNP
rs573236940 460 dbSNP
rs1225866382 482 dbSNP
rs1382977628 484 dbSNP
rs1371751545 487 dbSNP
rs960345839 492 dbSNP
rs368521498 496 dbSNP
rs1452183769 504 dbSNP
rs1339129255 507 dbSNP
rs149546271 513 dbSNP
rs1452333674 517 dbSNP
rs536771310 538 dbSNP
rs573309795 545 dbSNP
rs1355620187 546 dbSNP
rs574045816 549 dbSNP
rs1306294401 551 dbSNP
rs554787760 556 dbSNP
rs117176080 559 dbSNP
rs569156308 560 dbSNP
rs1036174859 564 dbSNP
rs1158970555 565 dbSNP
rs940526135 570 dbSNP
rs1052081501 572 dbSNP
rs931667480 573 dbSNP
rs1177281703 574 dbSNP
rs552019146 575 dbSNP
rs777780771 576 dbSNP
rs538530557 583 dbSNP
rs1430604417 585 dbSNP
rs1473164856 586 dbSNP
rs1259749582 587 dbSNP
rs190767175 590 dbSNP
rs978521191 591 dbSNP
rs1485438668 593 dbSNP
rs947149210 605 dbSNP
rs752900288 610 dbSNP
rs553158641 611 dbSNP
rs989020785 615 dbSNP
rs1346054163 616 dbSNP
rs529839699 625 dbSNP
rs1229457214 627 dbSNP
rs767754919 630 dbSNP
rs1308926873 634 dbSNP
rs1204834904 648 dbSNP
rs560782281 650 dbSNP
rs1294545028 655 dbSNP
rs1200936395 658 dbSNP
rs980723642 659 dbSNP
rs1354361114 664 dbSNP
rs549489741 666 dbSNP
rs1422036805 670 dbSNP
rs970094635 674 dbSNP
rs138076574 675 dbSNP
rs1352974933 678 dbSNP
rs150198165 689 dbSNP
rs565591162 700 dbSNP
rs545748238 703 dbSNP
rs573552710 706 dbSNP
rs1346079317 710 dbSNP
rs1419965228 714 dbSNP
rs186207168 715 dbSNP
rs1272976770 718 dbSNP
rs1363859092 719 dbSNP
rs1162829034 721 dbSNP
rs897282012 724 dbSNP
rs142322872 725 dbSNP
rs1224074890 729 dbSNP
rs73068597 738 dbSNP
rs1490335544 748 dbSNP
rs1220966916 765 dbSNP
rs1244305568 767 dbSNP
rs1485092585 786 dbSNP
rs1241952453 787 dbSNP
rs890246102 789 dbSNP
rs776305801 797 dbSNP
rs1446603629 801 dbSNP
rs1470192269 814 dbSNP
rs1364987788 815 dbSNP
rs1271834609 816 dbSNP
rs1422785130 817 dbSNP
rs143399338 818 dbSNP
rs1333596141 824 dbSNP
rs1431217692 827 dbSNP
rs931863913 830 dbSNP
rs760539158 835 dbSNP
rs900407734 839 dbSNP
rs1359577210 840 dbSNP
rs147695534 846 dbSNP
rs1315285480 847 dbSNP
rs538061022 848 dbSNP
rs947036125 848 dbSNP
rs575131205 849 dbSNP
rs1287028270 850 dbSNP
rs1396508552 853 dbSNP
rs182228455 862 dbSNP
rs1240684546 863 dbSNP
rs1462845446 866 dbSNP
rs191834501 870 dbSNP
rs1384837451 878 dbSNP
rs1442915354 879 dbSNP
rs1160311479 881 dbSNP
rs1460971732 884 dbSNP
rs1401178106 886 dbSNP
rs117379656 887 dbSNP
rs1386244839 891 dbSNP
rs1454350411 896 dbSNP
rs1172757089 910 dbSNP
rs1337062752 913 dbSNP
rs938867600 918 dbSNP
rs1419119657 922 dbSNP
rs1280725140 926 dbSNP
rs775055401 939 dbSNP
rs771744199 949 dbSNP
rs970737354 951 dbSNP
rs1326179052 956 dbSNP
rs1204694038 962 dbSNP
rs1027189054 966 dbSNP
rs974079190 968 dbSNP
rs1184115635 970 dbSNP
rs147049511 977 dbSNP
rs1469670279 979 dbSNP
rs1213695638 988 dbSNP
rs1467614658 989 dbSNP
rs1015634011 990 dbSNP
rs750075781 996 dbSNP
rs1008704149 1000 dbSNP
rs1176817052 1001 dbSNP
rs1206037979 1005 dbSNP
rs890309318 1007 dbSNP
rs1412364623 1009 dbSNP
rs535828218 1014 dbSNP
rs1330336582 1023 dbSNP
rs1335887019 1028 dbSNP
rs1030609596 1033 dbSNP
rs1287067062 1047 dbSNP
rs1347871742 1049 dbSNP
rs567379015 1050 dbSNP
rs767167392 1051 dbSNP
rs1197826188 1052 dbSNP
rs879113482 1054 dbSNP
rs745358725 1055 dbSNP
rs1437385857 1062 dbSNP
rs1180091037 1065 dbSNP
rs755845873 1069 dbSNP
rs1249547915 1080 dbSNP
rs1481339217 1082 dbSNP
rs756717480 1086 dbSNP
rs1366538368 1087 dbSNP
rs1199927335 1094 dbSNP
rs1428285217 1095 dbSNP
rs1476908087 1097 dbSNP
rs34513698 1100 dbSNP
rs1301149056 1104 dbSNP
rs774073808 1109 dbSNP
rs1011257687 1116 dbSNP
rs186946231 1118 dbSNP
rs1052893275 1129 dbSNP
rs1460535335 1140 dbSNP
rs1283178755 1141 dbSNP
rs1354100700 1151 dbSNP
rs1174564702 1152 dbSNP
rs1230067788 1162 dbSNP
rs1271052591 1166 dbSNP
rs770482792 1174 dbSNP
rs938456874 1187 dbSNP
rs1203118455 1191 dbSNP
rs1293996974 1194 dbSNP
rs1490827853 1196 dbSNP
rs1223202686 1197 dbSNP
rs1266553053 1200 dbSNP
rs1044995848 1210 dbSNP
rs1194988599 1215 dbSNP
rs563793978 1220 dbSNP
rs1474852202 1224 dbSNP
rs1166197053 1225 dbSNP
rs770876718 1226 dbSNP
rs1424706636 1230 dbSNP
rs920186190 1238 dbSNP
rs974255788 1241 dbSNP
rs749183067 1242 dbSNP
rs908522512 1243 dbSNP
rs986805922 1244 dbSNP
rs1479378755 1252 dbSNP
rs777654255 1263 dbSNP
rs955666703 1265 dbSNP
rs1360312265 1266 dbSNP
rs780211587 1267 dbSNP
rs1264804648 1270 dbSNP
rs1487425209 1278 dbSNP
rs1206699672 1279 dbSNP
rs1028405463 1287 dbSNP
rs1464255658 1298 dbSNP
rs756233375 1306 dbSNP
rs964508696 1310 dbSNP
rs1444778875 1316 dbSNP
rs1021557160 1337 dbSNP
rs181130510 1338 dbSNP
rs1455770116 1356 dbSNP
rs1233337859 1364 dbSNP
rs1011477867 1382 dbSNP
rs151310425 1386 dbSNP
rs10401403 1396 dbSNP
rs188684845 1399 dbSNP
rs1002538655 1400 dbSNP
rs906977730 1404 dbSNP
rs1452009569 1412 dbSNP
rs1044116995 1414 dbSNP
rs1313681751 1414 dbSNP
rs560046584 1416 dbSNP
rs543010055 1430 dbSNP
rs1319874666 1434 dbSNP
rs1241157091 1435 dbSNP
rs947183127 1436 dbSNP
rs1261205571 1438 dbSNP
rs142395490 1445 dbSNP
rs1206573546 1449 dbSNP
rs1244611292 1453 dbSNP
rs948891623 1462 dbSNP
rs920069910 1465 dbSNP
rs1253403381 1471 dbSNP
rs781333122 1476 dbSNP
rs940307662 1477 dbSNP
rs879041807 1479 dbSNP
rs1411872071 1481 dbSNP
rs1456036015 1498 dbSNP
rs148804577 1501 dbSNP
rs908777034 1504 dbSNP
rs1301291493 1505 dbSNP
rs578152356 1508 dbSNP
rs1365998292 1518 dbSNP
rs955394539 1530 dbSNP
rs921359067 1534 dbSNP
rs1416782595 1537 dbSNP
rs577713197 1540 dbSNP
rs867198240 1543 dbSNP
rs1226352455 1546 dbSNP
rs1188190168 1548 dbSNP
rs748601111 1549 dbSNP
rs112327797 1551 dbSNP
rs1021440864 1558 dbSNP
rs1253857168 1574 dbSNP
rs1481368331 1576 dbSNP
rs1199610176 1594 dbSNP
rs544766971 1595 dbSNP
rs543977517 1607 dbSNP
rs1471872241 1612 dbSNP
rs11883359 1614 dbSNP
rs1202064893 1623 dbSNP
rs1351209292 1625 dbSNP
rs572806019 1628 dbSNP
rs1174303952 1630 dbSNP
rs955978001 1635 dbSNP
rs1462573859 1640 dbSNP
rs1307426886 1643 dbSNP
rs1236843679 1645 dbSNP
rs1316390090 1650 dbSNP
rs1285092899 1652 dbSNP
rs1293934223 1655 dbSNP
rs1416734541 1660 dbSNP
rs1345960817 1662 dbSNP
rs1218428708 1664 dbSNP
rs1298815815 1665 dbSNP
rs1308838696 1670 dbSNP
rs1353724773 1672 dbSNP
rs1312509955 1673 dbSNP
rs1383113280 1675 dbSNP
rs1387674328 1676 dbSNP
rs1260168283 1677 dbSNP
rs1453731422 1678 dbSNP
rs1270225847 1679 dbSNP
rs1419231696 1684 dbSNP
rs1189781801 1693 dbSNP
rs1421922893 1697 dbSNP
rs1164929806 1698 dbSNP
rs1475912391 1702 dbSNP
rs1168064598 1703 dbSNP
rs1002958772 1705 dbSNP
rs1031576730 1705 dbSNP
rs1219866202 1705 dbSNP
rs1228745646 1705 dbSNP
rs1244146754 1705 dbSNP
rs1247514142 1705 dbSNP
rs1293156778 1705 dbSNP
rs1304955578 1705 dbSNP
rs1321571768 1705 dbSNP
rs1339539453 1705 dbSNP
rs1350389732 1705 dbSNP
rs1363660288 1705 dbSNP
rs1388454047 1705 dbSNP
rs1423023376 1705 dbSNP
rs1426598345 1705 dbSNP
rs1486386004 1705 dbSNP
rs767973198 1705 dbSNP
rs1415194877 1706 dbSNP
rs1446583814 1706 dbSNP
rs1164236617 1709 dbSNP
rs1186487675 1712 dbSNP
rs552966412 1715 dbSNP
rs1404643752 1723 dbSNP
rs1162568035 1725 dbSNP
rs1346785461 1727 dbSNP
rs530645407 1731 dbSNP
rs1435535079 1734 dbSNP
rs1319541534 1737 dbSNP
rs1362506118 1739 dbSNP
rs1454123224 1739 dbSNP
rs1284232483 1757 dbSNP
rs1356287282 1760 dbSNP
rs906829033 1762 dbSNP
rs1286921522 1766 dbSNP
rs1203186859 1768 dbSNP
rs1464356701 1776 dbSNP
rs1462774616 1781 dbSNP
rs1180110149 1790 dbSNP
rs1184310211 1790 dbSNP
rs1237022885 1790 dbSNP
rs1410050712 1790 dbSNP
rs1471832244 1790 dbSNP
rs1482625258 1790 dbSNP
rs868157889 1790 dbSNP
rs1172869723 1791 dbSNP
rs1481278719 1791 dbSNP
rs1273742876 1792 dbSNP
rs1401039139 1792 dbSNP
rs1438454440 1793 dbSNP
rs1235151482 1794 dbSNP
rs1332839942 1804 dbSNP
rs1371752253 1810 dbSNP
rs1409797222 1818 dbSNP
rs1292899815 1820 dbSNP
rs536257396 1821 dbSNP
rs1228476413 1827 dbSNP
rs879026085 1828 dbSNP
rs183682023 1833 dbSNP
rs1382018749 1836 dbSNP
rs1395787806 1840 dbSNP
rs1328590110 1841 dbSNP
rs1343052008 1845 dbSNP
rs1216435045 1846 dbSNP
rs1275379706 1847 dbSNP
rs1482757606 1853 dbSNP
rs1204398026 1854 dbSNP
rs1249527495 1857 dbSNP
rs567182912 1858 dbSNP
rs1224414010 1860 dbSNP
rs1391702970 1863 dbSNP
rs1476816684 1864 dbSNP
rs1169170057 1865 dbSNP
rs1012590710 1867 dbSNP
rs1428529106 1873 dbSNP
rs1162260911 1879 dbSNP
rs556891378 1885 dbSNP
rs1475509828 1891 dbSNP
rs1387712417 1895 dbSNP
rs1374468857 1896 dbSNP
rs112500341 1897 dbSNP
rs1448658726 1908 dbSNP
rs1433213177 1909 dbSNP
rs750693682 1913 dbSNP
rs1226260065 1914 dbSNP
rs1358303049 1923 dbSNP
rs940190731 1925 dbSNP
rs1449620470 1928 dbSNP
rs1190181565 1929 dbSNP
rs1248241724 1932 dbSNP
rs1215555572 1934 dbSNP
rs1166100885 1945 dbSNP
rs1387667013 1953 dbSNP
rs887390779 1960 dbSNP
rs143993973 1969 dbSNP
rs1389075458 1972 dbSNP
rs755518533 1973 dbSNP
rs867838874 1974 dbSNP
rs1321538360 1978 dbSNP
rs1364658243 1984 dbSNP
rs1432999506 1989 dbSNP
rs865877695 1997 dbSNP
rs1341682011 1998 dbSNP
rs1268654276 2006 dbSNP
rs1228113119 2011 dbSNP
rs921253302 2013 dbSNP
rs552013174 2014 dbSNP
rs1306233174 2015 dbSNP
rs1464128427 2016 dbSNP
rs528648366 2018 dbSNP
rs111616082 2019 dbSNP
rs915324791 2020 dbSNP
rs549446972 2022 dbSNP
rs1367223593 2024 dbSNP
rs1459170105 2024 dbSNP
rs955862919 2025 dbSNP
rs529569870 2027 dbSNP
rs1455800299 2030 dbSNP
rs1398114761 2031 dbSNP
rs1165850353 2033 dbSNP
rs1428861072 2036 dbSNP
rs981358315 2040 dbSNP
rs1338558077 2045 dbSNP
rs1230034566 2048 dbSNP
rs146182111 2058 dbSNP
rs759007883 2059 dbSNP
rs1257391135 2060 dbSNP
rs141684994 2065 dbSNP
rs1246082114 2066 dbSNP
rs1254693955 2070 dbSNP
rs1016631304 2074 dbSNP
rs1183385852 2084 dbSNP
rs1182550037 2094 dbSNP
rs1471799415 2107 dbSNP
rs1004346521 2108 dbSNP
rs1271144808 2114 dbSNP
rs887245829 2116 dbSNP
rs1051804722 2131 dbSNP
rs934233221 2132 dbSNP
rs1411639122 2133 dbSNP
rs1308527182 2139 dbSNP
rs879183990 2141 dbSNP
rs1204758674 2143 dbSNP
rs900071794 2146 dbSNP
rs1302974371 2168 dbSNP
rs543790928 2173 dbSNP
rs1231933451 2181 dbSNP
rs1253697216 2186 dbSNP
rs1282855442 2189 dbSNP
rs1206557350 2190 dbSNP
rs1251703980 2196 dbSNP
rs1482284285 2198 dbSNP
rs946690679 2205 dbSNP
rs1232594716 2206 dbSNP
rs915334502 2207 dbSNP
rs988182881 2209 dbSNP
rs1432768865 2213 dbSNP
rs376758600 2215 dbSNP
rs373490662 2224 dbSNP
rs180928016 2229 dbSNP
rs1169206932 2232 dbSNP
rs1305761884 2235 dbSNP
rs1439762759 2237 dbSNP
rs1295031250 2246 dbSNP
rs1367896934 2247 dbSNP
rs1408889440 2248 dbSNP
rs1346669234 2251 dbSNP
rs1375700075 2259 dbSNP
rs924440199 2275 dbSNP
rs1175234228 2278 dbSNP
rs1298704624 2282 dbSNP
rs1343744916 2285 dbSNP
rs1228412737 2292 dbSNP
rs981668155 2303 dbSNP
rs971361335 2325 dbSNP
rs1247698753 2327 dbSNP
rs544827188 2336 dbSNP
rs1189755367 2337 dbSNP
rs1250130371 2338 dbSNP
rs1187939582 2342 dbSNP
rs1450173171 2342 dbSNP
rs572669106 2353 dbSNP
rs991150412 2356 dbSNP
rs1408100734 2361 dbSNP
rs10419802 2363 dbSNP
rs1350299879 2368 dbSNP
rs1457202987 2381 dbSNP
rs1323490691 2382 dbSNP
rs1366850366 2385 dbSNP
rs1016644272 2387 dbSNP
rs1296178253 2389 dbSNP
rs1359217916 2395 dbSNP
rs1230581239 2398 dbSNP
rs542581641 2403 dbSNP
rs1403490371 2414 dbSNP
rs1231304446 2416 dbSNP
rs573873115 2418 dbSNP
rs1486099649 2429 dbSNP
rs1259882200 2432 dbSNP
rs1465473403 2437 dbSNP
rs1188039397 2442 dbSNP
rs1246303570 2443 dbSNP
rs1209104705 2446 dbSNP
rs1312037902 2448 dbSNP
rs1285571898 2449 dbSNP
rs1414435605 2455 dbSNP
rs1423045753 2470 dbSNP
rs1226016771 2472 dbSNP
rs1162471696 2477 dbSNP
rs556722582 2486 dbSNP
rs6510112 2492 dbSNP
rs998756391 2493 dbSNP
rs1342987334 2496 dbSNP
rs1227276131 2500 dbSNP
rs1449579344 2502 dbSNP
rs78462426 2503 dbSNP
rs1379008384 2504 dbSNP
rs373410733 2509 dbSNP
rs1445540178 2512 dbSNP
rs1358407895 2519 dbSNP
rs1330202360 2523 dbSNP
rs1455418946 2524 dbSNP
rs1266455066 2527 dbSNP
rs534692153 2529 dbSNP
rs566172003 2530 dbSNP
rs866168927 2535 dbSNP
rs1158437809 2541 dbSNP
rs1185674161 2548 dbSNP
rs1413974042 2557 dbSNP
rs1475585411 2558 dbSNP
rs1158048811 2559 dbSNP
rs549552131 2560 dbSNP
rs1010912537 2562 dbSNP
rs1334191219 2574 dbSNP
rs1359124797 2575 dbSNP
rs397718288 2575 dbSNP
rs58495174 2575 dbSNP
rs1278004624 2576 dbSNP
rs893787367 2576 dbSNP
rs1219922206 2577 dbSNP
rs1483110688 2579 dbSNP
rs1278057851 2580 dbSNP
rs1345792192 2581 dbSNP
rs529600397 2587 dbSNP
rs570291432 2596 dbSNP
rs1208716202 2607 dbSNP
rs1052533888 2610 dbSNP
rs1243104158 2611 dbSNP
rs1483263340 2614 dbSNP
rs1181118372 2617 dbSNP
rs775062640 2623 dbSNP
rs1478783148 2628 dbSNP
rs1445732564 2633 dbSNP
rs928019426 2638 dbSNP
rs1268053307 2645 dbSNP
rs1432309386 2645 dbSNP
rs1171110484 2647 dbSNP
rs35069551 2649 dbSNP
rs1334994465 2650 dbSNP
rs533129934 2656 dbSNP
rs1437521591 2658 dbSNP
rs1226309844 2659 dbSNP
rs1345901222 2661 dbSNP
rs1230618570 2668 dbSNP
rs1342724442 2669 dbSNP
rs1378024570 2671 dbSNP
rs1270670120 2672 dbSNP
rs1453091510 2673 dbSNP
rs1199197039 2685 dbSNP
rs563839866 2687 dbSNP
rs1251980973 2689 dbSNP
rs991327237 2690 dbSNP
rs1189868069 2692 dbSNP
rs1391363488 2696 dbSNP
rs866797403 2697 dbSNP
rs1166643711 2700 dbSNP
rs774161494 2708 dbSNP
rs564258339 2713 dbSNP
rs1323148687 2717 dbSNP
rs909526049 2719 dbSNP
rs982844150 2720 dbSNP
rs1432643610 2722 dbSNP
rs770751915 2723 dbSNP
rs749057705 2730 dbSNP
rs1268330850 2732 dbSNP
rs1358280998 2738 dbSNP
rs951187415 2740 dbSNP
rs1029816032 2746 dbSNP
rs773188559 2748 dbSNP
rs964167075 2749 dbSNP
rs1018554391 2751 dbSNP
rs769761992 2754 dbSNP
rs1427398519 2757 dbSNP
rs1191755509 2759 dbSNP
rs1370638761 2769 dbSNP
rs1162920317 2774 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucggucgguUGAGUGUCACGUcu 5'
                   |||  || ||||  
Target 5' -------acACUGUCAUUGCAcu 3'
 		1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 147687.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 147687.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202479. RNA binding protein: AGO2. Condition:S4_LV_29yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_152475 | 3UTR | CCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_152475 | 3UTR | UCAUUCUGUCACCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000312026.5 | 3UTR | CAGACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000312026.5 | 3UTR | ACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000312026.5 | 3UTR | CAGACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000312026.5 | 3UTR | ACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000312026.5 | 3UTR | CAGACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000312026.5 | 3UTR | CAGACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000312026.5 | 3UTR | CAGACACUGUCAUUGCACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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