pre-miRNA Information
pre-miRNA hsa-mir-3618   
Genomic Coordinates chr22: 20085746 - 20085833
Description Homo sapiens miR-3618 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3618
Sequence 52| UGUCUACAUUAAUGAAAAGAGC |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 11 22 + 20085807 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30730356 3 COSMIC
COSN30178222 4 COSMIC
COSN26973254 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs12159555 4 dbSNP
rs761877586 8 dbSNP
Putative Targets

Gene Information
Gene Symbol MRPL51   
Synonyms CDA09, HSPC241, MRP64, bMRP64
Description mitochondrial ribosomal protein L51
Transcript NM_016497   
Expression
Putative miRNA Targets on MRPL51
3'UTR of MRPL51
(miRNA target sites are highlighted)
>MRPL51|NM_016497|3'UTR
   1 AAGAGAAAGCTGAGAACTTCGGAAAAGGCTCATCTGTCACCCTGGAGAAGGGAAACTGTACTTTTCCCTGTGAGGAAACG
  81 GCTTTGTATTTTCTCTGTAATAAAATGGGGCTTCTTTGGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgaGAAAAGUAA---UUACAUcugu 5'
             |||| :|||     ||||    
Target 5' cggCTTTGTATTTTCTCTGTAataa 3'
79 - 103 95.00 -6.00
2
miRNA  3' cgaGAAAAGUAAUUACAUCUgu 5'
             ||||||  | :|| :||  
Target 5' gtaCTTTTCCCT-GTGAGGAaa 3'
58 - 78 94.00 -7.00
3
miRNA  3' cgaGAAAAGUAAUU---ACAUCUgu 5'
             ||  ||  | |   || |||  
Target 5' aggCTCATCTGTCACCCTGGAGAag 3'
26 - 50 91.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN29507446 14 COSMIC
COSN5718265 45 COSMIC
COSN509510 58 COSMIC
COSN31487097 71 COSMIC
COSN30104032 75 COSMIC
COSN30163260 79 COSMIC
COSN21742469 147 COSMIC
COSN29331271 242 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs202063773 13 dbSNP
rs747076308 14 dbSNP
rs1349508229 16 dbSNP
rs780173339 21 dbSNP
rs1339944454 28 dbSNP
rs1287151872 34 dbSNP
rs1341563155 35 dbSNP
rs558930437 36 dbSNP
rs746422940 38 dbSNP
rs779296628 50 dbSNP
rs1276853964 51 dbSNP
rs1218446019 59 dbSNP
rs545444196 68 dbSNP
rs1017125758 79 dbSNP
rs555793395 80 dbSNP
rs1006105633 83 dbSNP
rs923102481 86 dbSNP
rs1219861442 97 dbSNP
rs112821786 106 dbSNP
rs1173585907 114 dbSNP
rs148689307 118 dbSNP
rs1488465554 135 dbSNP
rs961969381 138 dbSNP
rs1015284943 147 dbSNP
rs1371202189 148 dbSNP
rs3948654 150 dbSNP
rs1200973272 155 dbSNP
rs544027647 161 dbSNP
rs1422938862 169 dbSNP
rs1300234475 170 dbSNP
rs1014292193 175 dbSNP
rs144091628 178 dbSNP
rs895856781 183 dbSNP
rs1316691302 187 dbSNP
rs1471296452 194 dbSNP
rs182821557 195 dbSNP
rs1284254604 196 dbSNP
rs1182046876 197 dbSNP
rs1481193290 199 dbSNP
rs2109429 202 dbSNP
rs1243166297 206 dbSNP
rs2109428 210 dbSNP
rs545515193 217 dbSNP
rs1208365594 219 dbSNP
rs1053518721 221 dbSNP
rs934621121 228 dbSNP
rs1259463853 236 dbSNP
rs1444042956 237 dbSNP
rs1025116956 243 dbSNP
rs1014191738 244 dbSNP
rs1442807639 245 dbSNP
rs892703780 255 dbSNP
rs904413134 256 dbSNP
rs1327117815 257 dbSNP
rs1048402 262 dbSNP
rs1157182877 273 dbSNP
rs1404869294 274 dbSNP
rs1397093851 275 dbSNP
rs943148009 276 dbSNP
rs1334040962 278 dbSNP
rs189909858 290 dbSNP
rs74056976 298 dbSNP
rs1050432180 299 dbSNP
rs539133668 313 dbSNP
rs1239041110 327 dbSNP
rs2159529 335 dbSNP
rs1258705414 342 dbSNP
rs764479094 344 dbSNP
rs1346810479 351 dbSNP
rs868836795 356 dbSNP
rs760957583 364 dbSNP
rs1277759841 366 dbSNP
rs1459930803 368 dbSNP
rs770421378 369 dbSNP
rs1238935024 370 dbSNP
rs1359403560 370 dbSNP
rs1178092490 371 dbSNP
rs1379623476 372 dbSNP
rs923377063 377 dbSNP
rs1172362893 381 dbSNP
rs1404527440 386 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51258.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgagaaAAGUAAUUACAUCUGu 5'
                | :| | |||||||| 
Target 5' gcugccUCUACUCAUGUAGACu 3'
14 - 35
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000229238.3 | 3UTR | UUUUCCUCUAGAUGCUGCCUCUACUCAUGUAGACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
29 hsa-miR-3618 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378435 SOX4 SRY-box 4 2 2
MIRT459627 GABARAP GABA type A receptor-associated protein 2 2
MIRT471295 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471369 PDZD8 PDZ domain containing 8 2 2
MIRT504886 MRPL51 mitochondrial ribosomal protein L51 2 2
MIRT505938 RBM33 RNA binding motif protein 33 2 8
MIRT525461 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT526767 ZNF527 zinc finger protein 527 2 2
MIRT526990 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528669 PDE4DIP phosphodiesterase 4D interacting protein 2 6
MIRT538462 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT542899 HSBP1 heat shock factor binding protein 1 2 2
MIRT550274 AHI1 Abelson helper integration site 1 2 2
MIRT551674 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT551689 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT551755 TRIM42 tripartite motif containing 42 2 2
MIRT555769 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556241 MARCH9 membrane associated ring-CH-type finger 9 2 2
MIRT556926 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT562638 ARID1A AT-rich interaction domain 1A 2 2
MIRT571348 RPL37 ribosomal protein L37 2 2
MIRT612818 KLHL3 kelch like family member 3 2 2
MIRT619329 TIPRL TOR signaling pathway regulator 2 4
MIRT653927 SERPINC1 serpin family C member 1 2 2
MIRT659150 DDHD1 DDHD domain containing 1 2 2
MIRT688334 FAM126B family with sequence similarity 126 member B 2 2
MIRT694760 FZD2 frizzled class receptor 2 2 2
MIRT700477 PUM1 pumilio RNA binding family member 1 2 2
MIRT702375 KLF10 Kruppel like factor 10 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3618 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-3618 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-3618 Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-3618 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-3618 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3618 Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-3618 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-3618 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3618 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-3618 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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