miRTarBase - #MIRT505192


—
pre-miRNA Information
pre-miRNA hsa-mir-3622b   
Genomic Coordinates chr8: 27701673 - 27701767
Description Homo sapiens miR-3622b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622b-3p
Sequence 58| UCACCUGAGCUCCCGUGCCUG |78
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1232922758 2 dbSNP
rs530939348 5 dbSNP
rs1439657384 10 dbSNP
rs1157333896 12 dbSNP
rs66683138 14 dbSNP
rs1044808718 15 dbSNP
rs946438979 19 dbSNP
rs551845360 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol USP46   
Synonyms -
Description ubiquitin specific peptidase 46
Transcript NM_001134223   
Other Transcripts NM_022832   
Expression
Putative miRNA Targets on USP46
3'UTR of USP46
(miRNA target sites are highlighted)		 
>USP46|NM_001134223|3'UTR
   1 CTGAAAGACCTGCGGGACTGATTCACGTGGGGAGAATGTTCACAGCACTGTCACCCGGCTTCTCCGCAGGCTTTCCTCTT
  81 CCCCAGTGGCCCACTAATGGTATCACTCCGAGTCTCAATGGTCTGGCTGTGTTAGACTCTCTCCTTTTGTGTTTTTACAT
 161 GCAGCACTACTCTTGGTTTTATTTCAGTCTGACATAGAGTTAACTGCAATCAGATTGTAGTCTGATTTATATGAATAACG
 241 GTTGCTAATTTTAGGACTGGGTGAAAGCTATGCCATTCATTATGTCTGGCTGTATTAGAATGACATTTCCTATGAATGTC
 321 TACGGTCTGTTTTAGGTGTTTGCTAAACTTCTATGGCTTCCAGGGTCTTCTTACAATGCATTCCTTTAACTTGTCCCTGG
 401 AAGCATTGCTACCCATTTTCAGCTTCTCTGCCTCTCTTCTGATACAAGGACAGAAGAATTGGGTAGATATTCACCTTTTA
 481 GGGGTGCAAGTATAGCTTTAAGTTTGTGCAAGTGAAAATGTTGAAAAGTGAGTAACCTCGATATTAAAATCATCCTTGAC
 561 ATGAAACAGGGTGAAGAGAAGCTGTCCGTGGCGGCTGGTGTTGGCTGGCATTGGCACTGGGCTGTGCTGACCTAGCCATT
 641 ACAATTCCAGGGGCTAAGAAGGCTCAGGGCAGACAAAGTCAAGAGGAGGAAGTTTTTGTGGACAATGAAAAGTTATTTTC
 721 GTACCTTTCTACCAAAACCAAGTTTCAGGAAAATAACTCTATGTTGTTTATTTTCAGTGACACTTATGTAAGGCCCTGTG
 801 AGTTGTATTTATCCTGTATCCGGCACTGCTAAGCTTTTCAAGGTATCTTTCCAATCCTGCTGATGTGGCAGTCAATGGCT
 881 GCAGGGCTGGCAAACCTCCCCTTAGCCAGTCAGCACGGCATTGTTCCTTATCAGGAATAACAAAGGTACTACATCTTTCC
 961 AGCCATCAGCACGTTGTACAACTTAACTTTTTAACATAGTCCGTCTGTTTACTGAGGCACTGGCGAGTCCCAGGGCTGAT
1041 ACAGAACCTTCCCTAGAGGGAATACCAGAGTTAGCTGGGTATAGAGGTGGCTCAAAGGAAGTGTCCGTGGGCAGGGGGAG
1121 GAATGAACAAAATGGCGCTGTTTCTTTGGCTCAGACTCCTAGAATGCTTGACAAGACAGAATTTTTTTGGAAGAACCTCA
1201 TCTCACTATAGTTACTTTTTTCACTTTTGTTATATATGTATTTATTAGAGCATTTGAATATTGGTACCTTTAAAAGGGTC
1281 ATTTGGTGTTTTGCTGTTGAGCTGGTTTTTGAGTCATAGATCTTGGCTTCCTTTAGAAGCCACTTAACTTCCATACACTA
1361 TAATAAACTGTGAACATATTTTTGTTACCTAATGCATCCACTGATGAACATGCAAACTTTGGGCATAATGTGAACTAAAA
1441 TTGAAATGGAAAATGTTAGTGGCCATTTTGCAACAATGAAGAGGATAGCACTTTATCTAGATGAAAACTGGATTTCTTAT
1521 CTTTGAAATATCTTGAACTGTTTATTGCTCAGAACTTAAGTAAGCATGCCAACATTTCGTTTGTTTATGCTTGAAGTGAA
1601 ATGTTTTACTTTTCACTGGAGAAGACAAAACAGGGTGATCTTCATGTTATTGTTTTATACAAGTGATGGAAATGTACCTT
1681 GCCTTGTTTAGAGGCAATTTCACATTTATAAATATTTTTTTTTCCTCCATGAAACTTACGCAGTAATCACTACCTGGAAG
1761 GTGAGTTTTGATCTCTTTTTAAGGAGAGGCACTTTCCAACTGAAGGTGATTGATGTAGGGAAATGTTTGTACTATATAGA
1841 ATCCATATATTTGACTGCAAGTTACAAAGTTTTAAGAACATGATGGTTGGTCTCTAATATATTTGGAACTGATTCATAAG
1921 AAAAGTTATTAAAATTATCTTTGAAACACCTCTTGAAGCTAATTTATTAGAAAAAATATTTCAGTTGGAAGGCTGTAGAA
2001 GTAATGTTTAAATGCTAAGTCATAAGTTCAGGATATTTCTTTTCTATTTGGTTGTGCAAAATGTTTTTCCCAGTTATTTA
2081 ATCGAAGTAATTCCTTTTAATAGAAAGAGTCAGTTAAAATTCAGCATTCATGGATAGATTTTTGGAACGAAAAAGGGTAA
2161 GTATAAGAAAATATTGCAAACACATTAAAACAGTTGTATGGTGCAGGAAAAGAAGATTGGAAAAAGACCAAAACACACTT
2241 CTCCAGCAACACTCCATCAGCTTTTTAAAATTTAGAGCTATCTGCTAATTTTTTCCCTCTTCCTTCTCAATAAATGAAAC
2321 AAACACTGGGCAGCTGCAGGTTTCTCCCAATCATGTCTCTTTATGTAAAGACAGTAACATGCAAACACTTTTAGTTTACA
2401 TCCCTCATTCACAGTGTAAAGCAGGAAATGGTGTGGGAGATGTGAGACCATTCTGAGGTCAGCGATAGCCCAAAGGCTCT
2481 GCAGTATTCCCTCCAATGGCCAAGGATTCCGTGTGTCATCTGCAGGAGTGAGTAGGCCTGCTGTATTTCTTGTAACTGCT
2561 GGGTGTTACAAAATAAGTTACAATGTTTTACACTTTAAAAAAAAAACAGAAGGAACATTTGCTTTATTGGTTACTTACTA
2641 GTTTAGCCTCTAGGTTATGGCACAGCATGCTAAAAAATCATGTGTTTAAAAGTAAATGTTGGTAAAATGCTGGCATCTGG
2721 TCCTATTGTGTTGATGCATTTTCACTTCTGTGGTCATAGGAAATGGACTGGTCTAAAGAGAGTGAGGCACAACACAAGCA
2801 GGGCATTAGTTTGAATAGGAAGTCAATCATATTTGGTTTTATGGCCTGGTGTATTTTGGGTTTAAGATAAAATAGGGAAA
2881 AATGTCAGAAATGATCCCTATGCATTTATTTTCATGGATACCCTTAATTTCATGGGCATGCCTAATAATGATCTATGTTC
2961 TAACTGGAGCTTAGGGCTTATTTTAGATATTGGAGTGTAGCTTTATTACAGATGGATTTTATCTTTCAACATTGCATTTT
3041 GATCAACTTTGTATATTCACGTGTATTAAAATATTGTGCACTAAATGTTTTGCCCTTGTTTGCTATTATATGGTCAAGGC
3121 ATTTATCAGCACTATTGTAATGAACTCATGTAAGTGGCATGGGTCAGGGAAAATTATTTCCTACTTTTCTGCCTAATTAA
3201 ATTTCTGTTTTCCAGTATTACATTAATTTATTTTTGGCTTCCATTTCTGTATAACCAAAATAGTTACTGTATTTGTGTGG
3281 CATTCCTATTATTTTGTTGCTAAAAATATTGTAGTTTTTATTTAAAATAATCTGTACCTTAATTTTTTAAAATGTAACCA
3361 ATTCAAGCACTTTAAGCAATAATGTCAATCTTGTGAAATTTTAATCAGTTTAACACCCTGCCTCTAAAATTGTTTGCAAA
3441 AAATAAATAAATGAATAAAATGGGAATTCTCTTTCTAGAGAATTATATCCGGGTAATGCTACACACATGGACTTAAAATC
3521 CTTTTTATAAAGTGTGAGTCAGTGGCAGGTCTTATGTCCAAGTAATTATTACAAACAATTTTGAAGCAGTGGAAATGTAC
3601 AGAACATTCTGATCATTATAATATATAAAGGCAGTATTACTCTCAAGGTTGATAAAAATCAATGTTCTGGAGATAACTCA
3681 TCACTTTTTTTGAGTGAAAAAGATCAACAGAATTTAATTCAGGAAATGGTATCTGGAGAATAGCAAATTGAGAATATCAG
3761 TGAAAAGAATTTAGGGATAGTTAACTAGGCATCACAGTGAATTTATTTTTGGGGACTTTGCATATAAAATCCTTTTAACC
3841 AGTTATGAAATGAAAGATCCATTCCCCAAATAAGAAGGCAGCTTCCAGTATCTGGTTTCTAGGAAGGAGTAGGACTGTGA
3921 TTGGTCCCTGGTGCCCTGACTTCTGGGCCTGTTTCTGAGCCATGGGGGACCCCCCAGCTTCAGAAATACTCACGTGGGTT
4001 CACACCACTCCCTGCCCCAGAAGGAGGGCAGGCACAGGTCCATGCCATGTGGCCTCAGTGAAGCCTACAGTAACTATGGG
4081 TAGGGCTGCTTTTCCCTGTCAATCACCCAGGGCACCTGTGGGTGGACAGAAGATTGTCATCGGAATACATGCTTGGGCCC
4161 AATTATGGGAATAAAACCTCATAGACCAAGAGCAGGGAATGTGCCAGTAAGTGTTGAGTCTCCCAGCTGCTGTCCATCTT
4241 CTCGGGGCAGTGCAGTTGAACCTGACTGAGCTGGAACAGAGACTGTTGGGAAGGTCACTTCTGTCTGCCACGAAGGCCAA
4321 AGGCAGAGAAGACCTTCTTGGGACTGTGTTTTTCTTTCCTAGGCCTCACTTTGTCCTGGGATTTATAGGACAGGCCTGTC
4401 ACTACCAAGGTGACACAAATTCTAGAGAATGTATTTTCCCATTTCTTCAAATTTCCTTTCCTCTCTTTTTATTGATACTT
4481 AAAATACCTTTACTAAAAAAATGAAGCCTTCCATTTCCATTCCCTTATATTTACATGAAGATAAAAATACTTACTAAGTC
4561 GTTGTATTTGTCCATTCTGGCAGTGCTATAAAGACATACCTGAGCGTGGGTCATTTCTGAAGAAAAGAGGTTTAATTGGC
4641 TCATGGTTTTATGGGCTGTACAGGCTTCTGTTCTGGGGGAGGCCTCAGGAAACTTACAATCAGCAGAAGGCAAAGGGAAA
4721 GCAAGCCCATCTTACATGGCAGGAGCAAGAGGAAGAGAGCAAAGGGGGAGGGGTTACACACTTTTCTTTCCTTTTTTTTT
4801 TTTAAGATGGAGTCTCACTGTCACCCAGGCTGGAGTGCAGTGATGAGATCTCAGCTCACTGCAACCTCTGCCTCCCGAGT
4881 TCAAGCGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGTGCCACTATACCCGGGTAATTTTTGTATT
4961 TTCAGTAGATACAAAGTTTTCTCATATTGGCCAAGCTGGTCTGGAACTCCTGACTTCAGGTGCCTCAGCCTCCCAAAGTG
5041 CTGGGATTACAGGCAAGAGCCACCTTGCTCGGCTGGGGTTACACACTTTTAAACAACCAGATCTCGTGAGAACTCAGTCA
5121 TGAGGCAGTACTAGGGGGATGGTGCTTAACCACCTATGATGCAATCACCTCCCACCAGGCCCCACCTCCAACACTGGGGA
5201 TTACAATTCAACATGGGATTTGGGTGGAGACACAGAGCCAAACCGTATCAGTCATTTTTCTTTTACTGAAGGAAAATTTT
5281 GGTTGTGGGGTTAGTACTAAAGATAGCCCATGTAGACTTTTTCTGAAGATACCCCAAGTGGAGAGATTTTTAATTAGGCA
5361 TTTATTTGGCACCTATTGCATTCTAGGCATTGTGATAGGAGCTGGGGGATAAAAAGGTGACACAGATTGGGTCCCTCTTA
5441 TGGACTCGTTTTTTGTCTCAGAAGACAAGTCTGGGTGAGAAAGAAATTTAAAATTTAAGTTGTGGAAATAACACGTGTGG
5521 GGGAAACTCCTTGCAATTCAGCACAGTTTGGTATTCAGCCCCAGCCTCAACATGCAGATGGCACTGTTGGATGAAGCCAC
5601 ACCATCTTTTTTCCTGGGAGCCCCACACTCTTCCCAGCCTGCCTTCTAGCTCAGGGACAACACATTTTGAAAAACAAAGT
5681 ATAAATCGATTATGTTGCAACAATGAACTTCACGTTTTGCCTCTTCTCATGTTAAAAGAGCCAGTATCATGAAAGCCTCA
5761 ACAGTGAGCTTTATGAATCAAATATCTGTTATTTCTAAACAATCTGTTTACATTATGACCAAATAATTAGAGCCTATCTA
5841 GACTTACCAAAATAAGATAGGGCATAAGCGATTTATTGGTGCATCAGCCTTTGTTTGCTTTTTAAGGTTCCTTTATGTTT
5921 TAAAGGGATTTGAACAAAAGACATCAGGAGCTTACAAAGGAAAAATAGCTTCATTTTGGTTATGAGATACCAGAGTCAGA
6001 AATGACATTAGATTGTATAGAAAAGACTTCTAATTGTGTGCTTACTTCCCACATGATTATAATAAACTATATATTAACAA
6081 CCTTGGGATCGTACTCAGGTTGTCAATTACACGGATGCATCTTTCACTTTTTTCTTTCCCAAGAGTGAGAGAAAGAGTGA
6161 GGTTGTGCTTAAGGCAGTGTGGAATTCTACAGAAGCTCTTCTTGGAAAAGGAGTTCAGGCACTTGTGTTGTAGACTGCAG
6241 TCTGATTCTGTTCTTACTTCCTCTCAGCATAAGGGAGCTTTGAAAAGAAAACTCAGACTTGTATCCGACTTGACCAGAAG
6321 CAAAATAACTTGATCATTGAAGCCACTATTTCTGTGTATTTGATCAAGTCCTCCTCTGGAATCCAATGCAGCCATATTCA
6401 TATTTCGGTCTCTCTTAATGGACCTTGCTGGAAAGAACATTCTGTGCTAAGAAAATGGAAAATAAACGTGAGAAAACTTT
6481 AAGAATGAGCCTTCACACCTCCTGCAGCAGGTGATAGCTCTGTACTTCAGAGCTTGTCTCCAGGTTGAGAATTACCTGTT
6561 TTCCACTCTGAGGGGATTAGAAAGATACTGTTTTAATGGGTTATAAAACTTGTGTGAAGAAGATTGGCCTTCTCCACCTC
6641 TCCTGTGAAATAAATTGTTTGAAAACTCTTTGAAGAGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              | |  || :||||||| 
Target 5' ggaaCTCCTGACTTCAGGTGc 3'
 5003 - 5023 149.00 -13.30
2 
miRNA  3' guCCGUGCCCUCGAGUCCAcu 5'
            || |: | | |||||||  
Target 5' ttGGGATCGTA-CTCAGGTtg 3'
 6083 - 6102 134.00 -15.40
3 
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              ||:|||| :|::|||| 
Target 5' tcaaCATGGGA-TTTGGGTGg 3'
 5208 - 5227 132.00 -21.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19661306 3 COSMIC
COSN28813828 7 COSMIC
COSN22662431 13 COSMIC
COSN30110727 26 COSMIC
COSN31583471 32 COSMIC
COSN20074965 38 COSMIC
COSN30481214 39 COSMIC
COSN20345307 43 COSMIC
COSN32077650 78 COSMIC
COSN19694589 82 COSMIC
COSN31595749 106 COSMIC
COSN30116939 242 COSMIC
COSN31543637 286 COSMIC
COSN31579745 325 COSMIC
COSN23724346 343 COSMIC
COSN25842084 551 COSMIC
COSN8615510 593 COSMIC
COSN1298180 632 COSMIC
COSN28699173 642 COSMIC
COSN28782448 697 COSMIC
COSN30164474 729 COSMIC
COSN31557690 953 COSMIC
COSN32181937 959 COSMIC
COSN31582986 1256 COSMIC
COSN31563488 1446 COSMIC
COSN31542986 1625 COSMIC
COSN15742561 2084 COSMIC
COSN32057331 2149 COSMIC
COSN29339493 2159 COSMIC
COSN31595502 2288 COSMIC
COSN8491103 2380 COSMIC
COSN8491102 2381 COSMIC
COSN31479903 2455 COSMIC
COSN31521658 2536 COSMIC
COSN31516540 2549 COSMIC
COSN26575691 2596 COSMIC
COSN27306510 2596 COSMIC
COSN15429185 2675 COSMIC
COSN9792068 2678 COSMIC
COSN5061429 2866 COSMIC
COSN24138922 3256 COSMIC
COSN27679527 3681 COSMIC
COSN25327688 3810 COSMIC
COSN25754733 3936 COSMIC
COSN22433564 4826 COSMIC
COSN32105772 4857 COSMIC
COSN9792067 4998 COSMIC
COSN2033276 5897 COSMIC
COSN14682110 6203 COSMIC
COSN1298179 6322 COSMIC
COSN7640236 6542 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs912052702 2 dbSNP
rs10010306 3 dbSNP
rs1194089042 5 dbSNP
rs1294045025 11 dbSNP
rs1478922707 13 dbSNP
rs143394949 14 dbSNP
rs1196987332 15 dbSNP
rs1418845866 22 dbSNP
rs116739012 24 dbSNP
rs1028984842 26 dbSNP
rs372133776 27 dbSNP
rs1292355862 31 dbSNP
rs761135486 34 dbSNP
rs750885309 38 dbSNP
rs768141638 39 dbSNP
rs7676586 43 dbSNP
rs149210559 47 dbSNP
rs1303889787 56 dbSNP
rs1419297624 57 dbSNP
rs1000650818 58 dbSNP
rs568207825 63 dbSNP
rs1358900862 65 dbSNP
rs116144418 66 dbSNP
rs1291177970 71 dbSNP
rs10001370 76 dbSNP
rs1207318127 77 dbSNP
rs1252348300 82 dbSNP
rs28482298 82 dbSNP
rs1175810152 83 dbSNP
rs1244620165 86 dbSNP
rs894918629 93 dbSNP
rs545803420 95 dbSNP
rs1382914099 100 dbSNP
rs1001171772 105 dbSNP
rs1171063434 106 dbSNP
rs532270842 109 dbSNP
rs560009191 111 dbSNP
rs902197000 112 dbSNP
rs1037457229 118 dbSNP
rs1041961302 119 dbSNP
rs940471948 121 dbSNP
rs867056014 127 dbSNP
rs1199562419 136 dbSNP
rs907607409 148 dbSNP
rs1377092638 151 dbSNP
rs190500234 153 dbSNP
rs778366743 161 dbSNP
rs1197279334 162 dbSNP
rs781576298 163 dbSNP
rs1260617619 166 dbSNP
rs1202652582 167 dbSNP
rs575986178 170 dbSNP
rs932071212 172 dbSNP
rs114145054 178 dbSNP
rs555880812 179 dbSNP
rs1426698757 183 dbSNP
rs1178499637 185 dbSNP
rs1231681879 186 dbSNP
rs542204579 189 dbSNP
rs576319053 193 dbSNP
rs556172834 194 dbSNP
rs964082036 196 dbSNP
rs1399503254 197 dbSNP
rs1433008515 204 dbSNP
rs1338639987 209 dbSNP
rs749819579 214 dbSNP
rs1014881463 215 dbSNP
rs1289571191 217 dbSNP
rs1361323151 227 dbSNP
rs1217398874 231 dbSNP
rs115010433 239 dbSNP
rs17051586 240 dbSNP
rs1385388322 241 dbSNP
rs184600045 242 dbSNP
rs1276090829 250 dbSNP
rs756502526 253 dbSNP
rs192154967 267 dbSNP
rs187230227 270 dbSNP
rs1431391832 279 dbSNP
rs1269431550 287 dbSNP
rs1480006924 297 dbSNP
rs80252753 301 dbSNP
rs1173929161 304 dbSNP
rs894999501 320 dbSNP
rs1409860984 322 dbSNP
rs182533779 323 dbSNP
rs372763780 324 dbSNP
rs867936551 325 dbSNP
rs571268091 327 dbSNP
rs1042113859 335 dbSNP
rs946270418 337 dbSNP
rs374798923 340 dbSNP
rs569383620 342 dbSNP
rs890729741 343 dbSNP
rs751728966 344 dbSNP
rs1273479965 349 dbSNP
rs766543522 351 dbSNP
rs932120266 352 dbSNP
rs763076709 353 dbSNP
rs1323497555 360 dbSNP
rs1283054047 361 dbSNP
rs1199128290 362 dbSNP
rs1037716782 367 dbSNP
rs1224023783 380 dbSNP
rs899410208 397 dbSNP
rs1490180778 405 dbSNP
rs1016374981 406 dbSNP
rs1234462504 409 dbSNP
rs1218021530 419 dbSNP
rs942158628 428 dbSNP
rs1407477983 437 dbSNP
rs1316145088 449 dbSNP
rs1417961803 451 dbSNP
rs907872566 454 dbSNP
rs1366235788 459 dbSNP
rs1424655667 470 dbSNP
rs552469619 484 dbSNP
rs145360570 486 dbSNP
rs1337918181 490 dbSNP
rs753833017 492 dbSNP
rs1340135261 508 dbSNP
rs1333212757 511 dbSNP
rs1394090887 513 dbSNP
rs886211110 520 dbSNP
rs529122007 531 dbSNP
rs1291921574 537 dbSNP
rs917801495 539 dbSNP
rs539953903 540 dbSNP
rs1274945772 555 dbSNP
rs1051486401 575 dbSNP
rs933152858 578 dbSNP
rs900298394 587 dbSNP
rs529792351 592 dbSNP
rs760576761 593 dbSNP
rs775143282 594 dbSNP
rs1472477764 595 dbSNP
rs771936382 599 dbSNP
rs1475515308 610 dbSNP
rs1367555552 614 dbSNP
rs1410904632 616 dbSNP
rs1000617291 620 dbSNP
rs966486332 621 dbSNP
rs1185798377 627 dbSNP
rs1425932971 631 dbSNP
rs1281901496 632 dbSNP
rs7675404 642 dbSNP
rs1007922432 644 dbSNP
rs1198560107 653 dbSNP
rs946047147 654 dbSNP
rs1260035773 657 dbSNP
rs1381407979 659 dbSNP
rs913335000 661 dbSNP
rs192796391 668 dbSNP
rs1340043941 669 dbSNP
rs1213885700 672 dbSNP
rs1451752012 673 dbSNP
rs890816619 688 dbSNP
rs576201764 696 dbSNP
rs556454564 709 dbSNP
rs774147893 710 dbSNP
rs114225503 720 dbSNP
rs878938333 721 dbSNP
rs1374845510 723 dbSNP
rs562343400 725 dbSNP
rs1445916177 734 dbSNP
rs577172574 738 dbSNP
rs1471121700 739 dbSNP
rs1337017534 743 dbSNP
rs1016497804 747 dbSNP
rs1374614114 754 dbSNP
rs1188219890 758 dbSNP
rs1319758823 760 dbSNP
rs145869228 764 dbSNP
rs1226669955 769 dbSNP
rs1410057188 773 dbSNP
rs1325432813 780 dbSNP
rs7697961 787 dbSNP
rs1047819159 793 dbSNP
rs1264016095 797 dbSNP
rs775113201 806 dbSNP
rs1161093963 811 dbSNP
rs765249700 814 dbSNP
rs879686243 816 dbSNP
rs1248589550 821 dbSNP
rs917929966 822 dbSNP
rs971599313 826 dbSNP
rs1193592578 844 dbSNP
rs1038915731 845 dbSNP
rs991102783 852 dbSNP
rs111712221 863 dbSNP
rs1177659941 870 dbSNP
rs188219192 875 dbSNP
rs979290427 883 dbSNP
rs966433868 901 dbSNP
rs1438336430 908 dbSNP
rs1020694240 909 dbSNP
rs868008240 913 dbSNP
rs1385063335 916 dbSNP
rs146469625 917 dbSNP
rs1296304973 918 dbSNP
rs1451113747 925 dbSNP
rs1405462569 928 dbSNP
rs1282443219 929 dbSNP
rs569036611 936 dbSNP
rs1329133958 937 dbSNP
rs1231411722 940 dbSNP
rs1262654287 947 dbSNP
rs1215922542 951 dbSNP
rs946048582 951 dbSNP
rs549143322 953 dbSNP
rs1287898110 969 dbSNP
rs1027991739 972 dbSNP
rs996823088 973 dbSNP
rs1200771576 975 dbSNP
rs913194277 981 dbSNP
rs552508240 998 dbSNP
rs182701186 1005 dbSNP
rs1363981466 1010 dbSNP
rs561660192 1018 dbSNP
rs938801082 1020 dbSNP
rs900781295 1024 dbSNP
rs1366864110 1025 dbSNP
rs1281219335 1031 dbSNP
rs1425297788 1032 dbSNP
rs1365241554 1042 dbSNP
rs374907185 1043 dbSNP
rs1392850235 1048 dbSNP
rs1442924816 1051 dbSNP
rs1377989865 1053 dbSNP
rs566390892 1054 dbSNP
rs1329991414 1056 dbSNP
rs1307255978 1058 dbSNP
rs1361661419 1063 dbSNP
rs980700612 1066 dbSNP
rs1006320498 1069 dbSNP
rs1406365352 1073 dbSNP
rs909468412 1079 dbSNP
rs1365837495 1081 dbSNP
rs886620478 1089 dbSNP
rs1047768708 1095 dbSNP
rs1418265449 1100 dbSNP
rs546565410 1107 dbSNP
rs1444652120 1113 dbSNP
rs950942885 1114 dbSNP
rs1347999884 1117 dbSNP
rs1478020695 1118 dbSNP
rs1245032128 1119 dbSNP
rs1030036646 1136 dbSNP
rs144035666 1137 dbSNP
rs1446390883 1158 dbSNP
rs1490561131 1172 dbSNP
rs1228920209 1174 dbSNP
rs1262759764 1176 dbSNP
rs1312666526 1177 dbSNP
rs1230226416 1181 dbSNP
rs964481354 1181 dbSNP
rs563204894 1199 dbSNP
rs748609229 1202 dbSNP
rs1457589626 1203 dbSNP
rs550227482 1204 dbSNP
rs1244527565 1208 dbSNP
rs903654309 1211 dbSNP
rs1180823232 1220 dbSNP
rs925216158 1221 dbSNP
rs1410948319 1233 dbSNP
rs1042701837 1234 dbSNP
rs979362610 1235 dbSNP
rs1224254985 1236 dbSNP
rs1344277823 1241 dbSNP
rs551268886 1242 dbSNP
rs1463801120 1248 dbSNP
rs1329594850 1249 dbSNP
rs913745712 1250 dbSNP
rs986916681 1260 dbSNP
rs1408506581 1265 dbSNP
rs549492277 1268 dbSNP
rs1449007529 1275 dbSNP
rs955189877 1281 dbSNP
rs1057086868 1300 dbSNP
rs1384482066 1301 dbSNP
rs938664801 1312 dbSNP
rs1317691680 1313 dbSNP
rs1028393051 1327 dbSNP
rs1265360386 1330 dbSNP
rs1347304408 1331 dbSNP
rs1044457444 1351 dbSNP
rs1451041982 1357 dbSNP
rs1486526399 1362 dbSNP
rs1187038942 1364 dbSNP
rs1262337393 1366 dbSNP
rs1476729519 1367 dbSNP
rs1178390569 1368 dbSNP
rs942200714 1370 dbSNP
rs1415330079 1371 dbSNP
rs1175614948 1373 dbSNP
rs532324112 1376 dbSNP
rs975129195 1377 dbSNP
rs984017411 1380 dbSNP
rs1340401320 1381 dbSNP
rs1398659187 1384 dbSNP
rs1285657443 1389 dbSNP
rs546137733 1392 dbSNP
rs1218291377 1399 dbSNP
rs755298648 1404 dbSNP
rs139100880 1408 dbSNP
rs1318226401 1409 dbSNP
rs1216636159 1412 dbSNP
rs150712081 1427 dbSNP
rs1487292921 1431 dbSNP
rs1423093237 1435 dbSNP
rs1201500362 1447 dbSNP
rs975766438 1449 dbSNP
rs1247132300 1459 dbSNP
rs1477541339 1460 dbSNP
rs1190833419 1462 dbSNP
rs964346907 1476 dbSNP
rs1006434908 1491 dbSNP
rs1402548695 1514 dbSNP
rs747255703 1520 dbSNP
rs1243606082 1537 dbSNP
rs1359972475 1541 dbSNP
rs1418470453 1545 dbSNP
rs867978307 1550 dbSNP
rs1026520449 1555 dbSNP
rs1441719265 1565 dbSNP
rs1350835246 1572 dbSNP
rs1436151956 1574 dbSNP
rs780381323 1578 dbSNP
rs540603172 1579 dbSNP
rs1055519349 1583 dbSNP
rs574711826 1589 dbSNP
rs1224739726 1591 dbSNP
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rs538299668 1610 dbSNP
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rs781501075 1625 dbSNP
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rs1415093094 1701 dbSNP
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rs1043631391 1704 dbSNP
rs1289099912 1709 dbSNP
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rs535664307 1736 dbSNP
rs758568096 1739 dbSNP
rs1002840756 1740 dbSNP
rs913734310 1741 dbSNP
rs905830195 1752 dbSNP
rs1274923605 1753 dbSNP
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rs1339265962 1760 dbSNP
rs1470623458 1761 dbSNP
rs1237751268 1763 dbSNP
rs986680475 1764 dbSNP
rs1189762853 1772 dbSNP
rs575511977 1777 dbSNP
rs1168675970 1784 dbSNP
rs942162482 1789 dbSNP
rs933717094 1795 dbSNP
rs1426256354 1799 dbSNP
rs1466410923 1805 dbSNP
rs1047918047 1822 dbSNP
rs1053437 1826 dbSNP
rs1334292252 1835 dbSNP
rs923531985 1836 dbSNP
rs975580419 1838 dbSNP
rs962317460 1839 dbSNP
rs1217732866 1845 dbSNP
rs1318373643 1845 dbSNP
rs1255890619 1855 dbSNP
rs1186827083 1856 dbSNP
rs1316335219 1860 dbSNP
rs1202388705 1867 dbSNP
rs1016556078 1883 dbSNP
rs1441859385 1885 dbSNP
rs1186059657 1893 dbSNP
rs538595204 1897 dbSNP
rs753611214 1897 dbSNP
rs1241116753 1902 dbSNP
rs1478366178 1902 dbSNP
rs1193460460 1910 dbSNP
rs1421898763 1915 dbSNP
rs950999481 1916 dbSNP
rs979497568 1918 dbSNP
rs868854209 1919 dbSNP
rs148700144 1922 dbSNP
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rs1033742497 1936 dbSNP
rs987951074 1943 dbSNP
rs1308835174 1948 dbSNP
rs1273275741 1959 dbSNP
rs1227453408 1970 dbSNP
rs1347149373 1979 dbSNP
rs1235720203 1980 dbSNP
rs1256746677 1992 dbSNP
rs1344443869 2002 dbSNP
rs867853985 2017 dbSNP
rs1034906734 2030 dbSNP
rs1002037016 2041 dbSNP
rs1216517561 2043 dbSNP
rs1261493450 2053 dbSNP
rs1435206342 2061 dbSNP
rs1317667252 2066 dbSNP
rs1376666979 2069 dbSNP
rs1476822205 2074 dbSNP
rs1453956395 2081 dbSNP
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rs755974873 2084 dbSNP
rs1329337040 2088 dbSNP
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rs1302278631 2102 dbSNP
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rs755249128 2109 dbSNP
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rs577504874 5316 dbSNP
rs1187350418 5329 dbSNP
rs1388298415 5332 dbSNP
rs193074536 5334 dbSNP
rs10033528 5337 dbSNP
rs1271443139 5366 dbSNP
rs921029026 5375 dbSNP
rs374447336 5389 dbSNP
rs560233334 5408 dbSNP
rs1332392795 5416 dbSNP
rs1328396899 5417 dbSNP
rs1431638677 5420 dbSNP
rs1296953013 5421 dbSNP
rs1363730479 5423 dbSNP
rs924483292 5440 dbSNP
rs1344692959 5445 dbSNP
rs954323117 5447 dbSNP
rs1285958897 5448 dbSNP
rs188079832 5450 dbSNP
rs1207617825 5454 dbSNP
rs1245657480 5455 dbSNP
rs971313107 5456 dbSNP
rs1194135009 5457 dbSNP
rs1329919205 5460 dbSNP
rs1027091487 5469 dbSNP
rs1476943209 5470 dbSNP
rs1221883117 5474 dbSNP
rs374498469 5477 dbSNP
rs777037069 5487 dbSNP
rs146834025 5491 dbSNP
rs1319978124 5493 dbSNP
rs555186384 5503 dbSNP
rs961854722 5514 dbSNP
rs535503211 5515 dbSNP
rs1304756773 5517 dbSNP
rs28692181 5524 dbSNP
rs1003373707 5531 dbSNP
rs1287033987 5545 dbSNP
rs1231592535 5550 dbSNP
rs540512038 5560 dbSNP
rs1388686530 5562 dbSNP
rs1351027331 5572 dbSNP
rs1175122063 5577 dbSNP
rs1044452545 5581 dbSNP
rs1012829198 5582 dbSNP
rs577819163 5586 dbSNP
rs1213741351 5592 dbSNP
rs574331516 5603 dbSNP
rs1430996877 5607 dbSNP
rs893083358 5614 dbSNP
rs1364092715 5622 dbSNP
rs1054392214 5623 dbSNP
rs1428291241 5633 dbSNP
rs1158643041 5637 dbSNP
rs934483681 5638 dbSNP
rs764011159 5642 dbSNP
rs144057159 5643 dbSNP
rs1040119504 5650 dbSNP
rs1294165857 5653 dbSNP
rs944486869 5654 dbSNP
rs545654287 5660 dbSNP
rs1331291328 5663 dbSNP
rs1188779355 5670 dbSNP
rs1351420556 5679 dbSNP
rs183150533 5687 dbSNP
rs1465779417 5688 dbSNP
rs932340119 5693 dbSNP
rs537774756 5700 dbSNP
rs985782656 5701 dbSNP
rs951731059 5702 dbSNP
rs1336468687 5703 dbSNP
rs1262544311 5704 dbSNP
rs754902024 5713 dbSNP
rs974735939 5714 dbSNP
rs1325842693 5719 dbSNP
rs1256804727 5730 dbSNP
rs961527430 5735 dbSNP
rs1227040517 5748 dbSNP
rs1264347451 5755 dbSNP
rs1354174678 5757 dbSNP
rs1197425471 5759 dbSNP
rs571824403 5764 dbSNP
rs1482582568 5765 dbSNP
rs1179711252 5769 dbSNP
rs148842079 5773 dbSNP
rs1437137743 5777 dbSNP
rs1476301660 5779 dbSNP
rs971502767 5780 dbSNP
rs1165651443 5784 dbSNP
rs1367896322 5787 dbSNP
rs924347652 5788 dbSNP
rs1170095699 5800 dbSNP
rs977244642 5802 dbSNP
rs751391806 5809 dbSNP
rs762786641 5810 dbSNP
rs572179783 5830 dbSNP
rs1396184457 5832 dbSNP
rs1449844971 5833 dbSNP
rs1403812622 5837 dbSNP
rs1012899176 5838 dbSNP
rs73152438 5847 dbSNP
rs1054347221 5848 dbSNP
rs991854350 5850 dbSNP
rs1229559837 5854 dbSNP
rs999181807 5856 dbSNP
rs1034124256 5857 dbSNP
rs903008144 5858 dbSNP
rs1486776946 5861 dbSNP
rs544591373 5869 dbSNP
rs145505334 5882 dbSNP
rs1195390432 5886 dbSNP
rs1391391365 5897 dbSNP
rs1182358945 5899 dbSNP
rs575823945 5907 dbSNP
rs888841616 5908 dbSNP
rs1377593628 5910 dbSNP
rs1015656700 5921 dbSNP
rs111527389 5925 dbSNP
rs1050144504 5933 dbSNP
rs149674317 5934 dbSNP
rs1383463237 5939 dbSNP
rs1257010762 5947 dbSNP
rs1297677623 5948 dbSNP
rs891247152 5961 dbSNP
rs1051272634 5966 dbSNP
rs1312504093 5968 dbSNP
rs997544320 5968 dbSNP
rs900071080 5975 dbSNP
rs1054075536 5979 dbSNP
rs1207043640 5984 dbSNP
rs920261621 5988 dbSNP
rs924378812 5990 dbSNP
rs974351291 5991 dbSNP
rs1230357501 5992 dbSNP
rs1397308600 5998 dbSNP
rs940303122 6001 dbSNP
rs1361214307 6019 dbSNP
rs1175767068 6022 dbSNP
rs1357126642 6030 dbSNP
rs1455019288 6031 dbSNP
rs1320641267 6040 dbSNP
rs1387198318 6047 dbSNP
rs1432836037 6051 dbSNP
rs529347164 6053 dbSNP
rs1368191571 6066 dbSNP
rs982043135 6071 dbSNP
rs917103303 6090 dbSNP
rs1310673572 6091 dbSNP
rs971574662 6094 dbSNP
rs1314293994 6096 dbSNP
rs368542731 6102 dbSNP
rs1268874006 6110 dbSNP
rs758162141 6112 dbSNP
rs750073280 6113 dbSNP
rs1249017056 6114 dbSNP
rs1033460153 6128 dbSNP
rs974081637 6138 dbSNP
rs962668126 6142 dbSNP
rs563186689 6177 dbSNP
rs764874751 6184 dbSNP
rs1420512113 6195 dbSNP
rs761290158 6202 dbSNP
rs1410623168 6210 dbSNP
rs7690812 6212 dbSNP
rs1327319824 6220 dbSNP
rs1008654425 6222 dbSNP
rs1390423607 6227 dbSNP
rs1435596720 6238 dbSNP
rs982906644 6244 dbSNP
rs955479895 6248 dbSNP
rs1411937208 6269 dbSNP
rs1289266145 6273 dbSNP
rs1393910564 6277 dbSNP
rs1328725539 6289 dbSNP
rs888954625 6301 dbSNP
rs764738699 6306 dbSNP
rs540990441 6311 dbSNP
rs376208713 6313 dbSNP
rs930432241 6316 dbSNP
rs1322855489 6322 dbSNP
rs1221398476 6335 dbSNP
rs898825658 6341 dbSNP
rs997008379 6348 dbSNP
rs1036468610 6352 dbSNP
rs1250694505 6356 dbSNP
rs1166478453 6365 dbSNP
rs1471404826 6365 dbSNP
rs533287574 6369 dbSNP
rs1413817466 6376 dbSNP
rs1404718074 6377 dbSNP
rs1162552753 6379 dbSNP
rs1356176786 6383 dbSNP
rs2270827 6386 dbSNP
rs117164613 6389 dbSNP
rs1369088025 6393 dbSNP
rs555391558 6394 dbSNP
rs949868148 6400 dbSNP
rs561720519 6406 dbSNP
rs192369561 6407 dbSNP
rs937159494 6408 dbSNP
rs991569771 6422 dbSNP
rs1206223619 6425 dbSNP
rs920518194 6431 dbSNP
rs1290830568 6433 dbSNP
rs1237582222 6438 dbSNP
rs1472202264 6446 dbSNP
rs541986807 6450 dbSNP
rs973274619 6454 dbSNP
rs940584267 6456 dbSNP
rs1430325551 6457 dbSNP
rs908580081 6458 dbSNP
rs957469784 6467 dbSNP
rs1032995305 6468 dbSNP
rs1029725441 6469 dbSNP
rs1447451845 6471 dbSNP
rs1282499480 6480 dbSNP
rs1229721137 6481 dbSNP
rs1367984873 6481 dbSNP
rs976000729 6495 dbSNP
rs576188835 6501 dbSNP
rs1033227299 6520 dbSNP
rs1278955641 6524 dbSNP
rs1441473742 6549 dbSNP
rs977801232 6555 dbSNP
rs557615695 6562 dbSNP
rs1207492262 6563 dbSNP
rs1249272187 6564 dbSNP
rs544050396 6566 dbSNP
rs867928222 6568 dbSNP
rs1187798687 6570 dbSNP
rs1000443652 6582 dbSNP
rs1478907377 6590 dbSNP
rs796141198 6593 dbSNP
rs1172922110 6603 dbSNP
rs903431748 6614 dbSNP
rs1414057003 6626 dbSNP
rs762958427 6635 dbSNP
rs1019931879 6662 dbSNP
rs112692633 6666 dbSNP
rs888944734 6672 dbSNP
rs895567339 6672 dbSNP
rs537053313 6675 dbSNP
rs1237724384 6681 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 64854.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guccgugcccucgaGUCCACu 5'
                        |||||| 
Target 5' -----------cagCAGGUGa 3'
 		1 - 10
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 64854.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903828
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_9124
Location of target site NM_022832 | 3UTR | GCAGCAGGUGAUAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000441222.3 | 3UTR | CAGCAGGUGAUAGCUCUGUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000441222.3 | 3UTR | CAGCAGGUGAUAGCUCUGUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000441222.3 | 3UTR | GCAGCAGGUGAUAGCUCUGUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.278 0.27 0.143 0.38 7 Click to see details
THCA 0.278 0.27 0.143 0.38 7 Click to see details
THCA 0.278 0.27 0.143 0.38 7 Click to see details
THCA 0.278 0.27 0.143 0.38 7 Click to see details
THCA 0.278 0.27 0.143 0.38 7 Click to see details
THCA 0.278 0.27 0.143 0.38 7 Click to see details
102 hsa-miR-3622b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076713 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080212 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081398 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107158 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254071 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409790 FOXO3 forkhead box O3 2 2
MIRT448679 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450206 ABHD15 abhydrolase domain containing 15 2 2
MIRT486621 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489267 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493117 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494570 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497395 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504900 CCDC86 coiled-coil domain containing 86 2 2
MIRT505192 USP46 ubiquitin specific peptidase 46 2 4
MIRT506522 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508162 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508545 PARVG parvin gamma 2 4
MIRT509850 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510088 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512094 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515381 RPL7 ribosomal protein L7 2 2
MIRT519176 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519964 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522292 NKAP NFKB activating protein 2 2
MIRT523160 HMGB2 high mobility group box 2 2 4
MIRT525314 FANCA Fanconi anemia complementation group A 2 2
MIRT528194 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532885 ZNF451 zinc finger protein 451 2 2
MIRT538209 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539497 ACTN4 actinin alpha 4 2 2
MIRT554600 RRAGC Ras related GTP binding C 2 2
MIRT562444 DCTN6 dynactin subunit 6 2 2
MIRT562748 AOC3 amine oxidase, copper containing 3 2 2
MIRT565798 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565838 SCML2 Scm polycomb group protein like 2 2 2
MIRT566072 RCC2 regulator of chromosome condensation 2 2 2
MIRT566104 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572407 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576198 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576313 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576651 Mill2 MHC I like leukocyte 2 1 1
MIRT576859 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606819 BICD2 BICD cargo adaptor 2 2 2
MIRT610738 NUDT16 nudix hydrolase 16 2 4
MIRT614798 RORA RAR related orphan receptor A 2 2
MIRT619006 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619420 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620405 MYO1H myosin IH 2 2
MIRT624869 ABHD13 abhydrolase domain containing 13 2 2
MIRT633527 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633927 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636611 CLIC5 chloride intracellular channel 5 2 2
MIRT640616 MIOX myo-inositol oxygenase 2 2
MIRT642605 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644624 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655113 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658976 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661495 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662996 TMEM59 transmembrane protein 59 2 2
MIRT663075 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665405 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666106 SSR1 signal sequence receptor subunit 1 2 2
MIRT669562 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670070 ZNF783 zinc finger family member 783 2 2
MIRT671192 ZNF891 zinc finger protein 891 2 2
MIRT675361 KLHL26 kelch like family member 26 2 2
MIRT678857 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679443 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684163 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684543 ZNF460 zinc finger protein 460 2 2
MIRT684674 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684971 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686006 NEK4 NIMA related kinase 4 2 2
MIRT687758 KIAA1328 KIAA1328 2 2
MIRT688961 ATXN3 ataxin 3 2 2
MIRT689409 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690001 MMP17 matrix metallopeptidase 17 2 2
MIRT690165 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690202 C5orf45 MRN complex interacting protein 2 2
MIRT690477 ZNF33A zinc finger protein 33A 2 2
MIRT690566 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692160 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693430 PLGLB2 plasminogen-like B2 2 2
MIRT693547 ZNF708 zinc finger protein 708 2 2
MIRT693697 PLGLB1 plasminogen-like B1 2 2
MIRT695006 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698525 TFRC transferrin receptor 2 2
MIRT699574 SIKE1 suppressor of IKBKE 1 2 2
MIRT703446 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704397 CTSS cathepsin S 2 2
MIRT704485 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709822 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710859 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711893 INSIG2 insulin induced gene 2 2 2
MIRT713796 CPLX2 complexin 2 2 2
MIRT718800 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719501 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719722 PDE6B phosphodiesterase 6B 2 2
MIRT722204 URM1 ubiquitin related modifier 1 2 2
MIRT723523 CLPTM1L CLPTM1 like 2 2
MIRT725471 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3622b-3p Platinum 23939 sensitive tissue
hsa-miR-3622b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622b-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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