pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol STMN1   
Synonyms C1orf215, LAP18, Lag, OP18, PP17, PP19, PR22, SMN
Description stathmin 1
Transcript NM_001145454   
Other Transcripts NM_005563 , NM_203399 , NM_203401   
Expression
Putative miRNA Targets on STMN1
3'UTR of STMN1
(miRNA target sites are highlighted)
>STMN1|NM_001145454|3'UTR
   1 GTACTTAATAAATATTTGCTGTTGATGATAGCAATGACCTTGAGACTGATGAACAGTCTGGCCAAGAGGATCCTTGATGT
  81 GGAAGATAGAAAAAGCCTTTGGGGTCAGGCAGACTTGGATTCTAATACCAGCCAGTTCTGCTTGCTGTGTCTGAGCCTCA
 161 GTTTACTCATCTGTGAAGAGGAGGTAGCAAGAATGAAAATGCCTGCCTTGTGGTTTGTTGTAAGGACAGACACTGCCAAC
 241 GTAGAGGGCCCAGCAGCTCACAGACCAGTTGCTCTGAGAGCAGACCACTCTTGCCTTGATGGTAGGGAACTATTTTTGTG
 321 CGTGGCAAGTGGGACCTTAGGAAGGAAGGCAACTGTGAGGCTTCTGAGAAGGACCCTACACAAGGGAGTTTCCTCCCAGG
 401 GCAGGTGAATGGAGAGGGTGGCAGAAGCCTACGGGAAGGGGTCACAGGGATCAGCTAGAGAGTGCCACCACCCTTCCTGG
 481 GGAATGCAGGGCAAGGTCCCTGGTGGGAGTTTTCCTGGGAAGCCAAAGAAGCGCCCAACAAAGACAGAATCAACATTTGG
 561 GTACCTTTGGTACCCAGAGGCAGCAATGCCAACTACAACCACACTGGAAGAAGAAGACCTTCTCCGCATAGATTCTCTGA
 641 TCTCTTCCTCCTTCATGGCACCAGCCCTGGGGAACCAGCATGGTGGGGAAATAATGAAGCTGGAATACAACCACTTACAG
 721 ACTTCACAACCTCCTCCTGTAGATACCAAAGGGATTTTAGGATCACATTTTATTTCTCACCTGAGCAAGAAAAGCTACAG
 801 GAGCATCTCAAGCAGAGGGCAGGAGTCTCCAGAGGAGTTCAAGGGGCTCTGGCAAGAAAAATCAAGGGGCTGTGTTCAAG
 881 AACTGGCTCCCTTGGTGATTGTATTACGAAGCCCATGTGTGCTGGATGCTGATGAAATTGCTGCCAAATGCCTGTGCAGC
 961 CTTGGCAAGGCCCTTTATTTCTCTGGGTCTCCATTTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTGAGGCAGAGTCTC
1041 ACTCTGTCGCCCAGGCTGGAGGGCAGTGGCGTGATCTCGGCTCACTGCAAGCCCCACCTTCTGAGTTCACGCCATTCTAC
1121 TGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTTATTTTTTGTATTTTTAGTAGAGACG
1201 GGGTTTCACCGCATTAGCCAAGATGGTCTCGATCTCCTGACCTCGTGATTCACCCACCTCAGCCTCCCAAAGTGCTGGGA
1281 TTACAGGCATGAGCCACTGCGCCCGGCCTGGGTCTCCGTTTCTCTAGCTGTGAAATGACTGTTCTAAAAGAGCCCTGCCG
1361 GACTTTGGCAGTCTGTAAGAAGACCTGAGTTCTTCTCTCAGTTCCAAGCAGGAAAATTGAACATACCCTGAGCCCAGAGC
1441 CTGCAACAAACTCTGGGCAGCCTCAGGAAGTCAGGCAGTGAAGTCGGAAAAATGATCTCTTCTGTATAGGGAGAAAATAA
1521 AAGTTTAAAAATTTGTAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacagggugggGGUGAGGACa 5'
                     ||||||:|| 
Target 5' ctgagagcagaCCACTCTTGc 3'
274 - 294 134.00 -15.10
2
miRNA  3' uaCAGGGUGGGGGUGAGGACa 5'
            || ||||| || :||||| 
Target 5' gaGTGCCACCACCCTTCCTGg 3'
460 - 480 131.00 -25.70
3
miRNA  3' uacAG-GGUGGGGGUGAGGACa 5'
             || | |||:|  |||||| 
Target 5' actTCACAACCTC--CTCCTGt 3'
721 - 740 129.00 -19.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19765927 14 COSMIC
COSN8455185 35 COSMIC
COSN32058182 105 COSMIC
COSN31605246 178 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1414834263 14 dbSNP
rs1424138960 18 dbSNP
rs1170473813 21 dbSNP
rs746932572 25 dbSNP
rs1263331395 27 dbSNP
rs1192280346 29 dbSNP
rs1487630524 33 dbSNP
rs779831395 36 dbSNP
rs1211369918 37 dbSNP
rs34023241 40 dbSNP
rs1167082171 44 dbSNP
rs897505947 46 dbSNP
rs1215084954 51 dbSNP
rs1034896350 55 dbSNP
rs1003480063 56 dbSNP
rs1332049209 63 dbSNP
rs1157805211 64 dbSNP
rs147016836 69 dbSNP
rs1252181990 76 dbSNP
rs1022934956 78 dbSNP
rs990574137 79 dbSNP
rs1044893920 87 dbSNP
rs764156593 92 dbSNP
rs554638336 112 dbSNP
rs1352104048 115 dbSNP
rs1285984684 131 dbSNP
rs1434789589 147 dbSNP
rs1032200160 159 dbSNP
rs998969523 161 dbSNP
rs1319135008 163 dbSNP
rs1328496637 184 dbSNP
rs1386414928 195 dbSNP
rs1368661029 204 dbSNP
rs1305004264 217 dbSNP
rs1398282867 220 dbSNP
rs141405796 240 dbSNP
rs568486391 241 dbSNP
rs922621700 242 dbSNP
rs976943073 250 dbSNP
rs1365336637 253 dbSNP
rs1463740481 259 dbSNP
rs1007733525 268 dbSNP
rs752533532 280 dbSNP
rs1166525218 305 dbSNP
rs911487817 308 dbSNP
rs1487033692 313 dbSNP
rs984303913 321 dbSNP
rs953027338 322 dbSNP
rs200744009 327 dbSNP
rs1254628995 346 dbSNP
rs1027372638 353 dbSNP
rs971811976 369 dbSNP
rs781095853 378 dbSNP
rs1195852293 384 dbSNP
rs1481435470 390 dbSNP
rs1272042757 393 dbSNP
rs994935451 399 dbSNP
rs897560098 405 dbSNP
rs1036556596 416 dbSNP
rs1349058962 417 dbSNP
rs1305995209 419 dbSNP
rs367891400 429 dbSNP
rs551771988 432 dbSNP
rs905106831 433 dbSNP
rs866003052 438 dbSNP
rs927746764 440 dbSNP
rs159528 441 dbSNP
rs370605285 452 dbSNP
rs1394690723 454 dbSNP
rs1010704339 455 dbSNP
rs1422275716 466 dbSNP
rs1307672659 471 dbSNP
rs775961642 472 dbSNP
rs1193839439 474 dbSNP
rs893631045 477 dbSNP
rs1052506212 478 dbSNP
rs1200189424 482 dbSNP
rs1483802072 494 dbSNP
rs1395493355 497 dbSNP
rs1175231041 500 dbSNP
rs935430244 501 dbSNP
rs776779167 502 dbSNP
rs1317579257 503 dbSNP
rs1278915519 511 dbSNP
rs1376970455 512 dbSNP
rs990151529 514 dbSNP
rs746212910 523 dbSNP
rs771048837 530 dbSNP
rs555112512 532 dbSNP
rs535281915 533 dbSNP
rs1399149942 536 dbSNP
rs1167971854 539 dbSNP
rs1463090032 545 dbSNP
rs184849908 554 dbSNP
rs1367196387 563 dbSNP
rs984788181 585 dbSNP
rs1187469055 587 dbSNP
rs138847891 595 dbSNP
rs1245340980 597 dbSNP
rs918771604 599 dbSNP
rs971780717 600 dbSNP
rs961778822 605 dbSNP
rs527879272 615 dbSNP
rs1259002701 616 dbSNP
rs1280643793 618 dbSNP
rs373044911 618 dbSNP
rs1354365395 624 dbSNP
rs927723650 625 dbSNP
rs113611897 626 dbSNP
rs548639716 635 dbSNP
rs1007702520 640 dbSNP
rs772684222 647 dbSNP
rs1316855638 656 dbSNP
rs550050316 668 dbSNP
rs748555274 675 dbSNP
rs1329165852 683 dbSNP
rs1287763213 684 dbSNP
rs1387968070 699 dbSNP
rs1415652193 702 dbSNP
rs1162193220 704 dbSNP
rs1023510654 715 dbSNP
rs376346682 729 dbSNP
rs17163344 739 dbSNP
rs994506058 743 dbSNP
rs1412543732 744 dbSNP
rs546229168 749 dbSNP
rs1233623621 752 dbSNP
rs1184250420 762 dbSNP
rs376435467 763 dbSNP
rs1401485211 771 dbSNP
rs1008201104 783 dbSNP
rs369138008 788 dbSNP
rs1266759224 795 dbSNP
rs1210556264 798 dbSNP
rs1360044378 799 dbSNP
rs192838008 814 dbSNP
rs1237641599 817 dbSNP
rs1409165475 818 dbSNP
rs1180763939 819 dbSNP
rs7533480 822 dbSNP
rs540198762 823 dbSNP
rs756852067 833 dbSNP
rs1006812472 841 dbSNP
rs746567395 846 dbSNP
rs1322271002 851 dbSNP
rs1185952040 859 dbSNP
rs1405079687 869 dbSNP
rs1442192811 877 dbSNP
rs369066585 878 dbSNP
rs1419406473 886 dbSNP
rs1048618922 892 dbSNP
rs372263447 899 dbSNP
rs796308328 900 dbSNP
rs931572720 905 dbSNP
rs918876894 907 dbSNP
rs368383660 910 dbSNP
rs376725420 922 dbSNP
rs935263619 925 dbSNP
rs1446419382 927 dbSNP
rs938863407 934 dbSNP
rs1233945127 948 dbSNP
rs554490225 951 dbSNP
rs924574564 968 dbSNP
rs1273901460 972 dbSNP
rs1357678511 973 dbSNP
rs1282633926 977 dbSNP
rs1399914240 978 dbSNP
rs537913116 981 dbSNP
rs977406725 983 dbSNP
rs1320671518 987 dbSNP
rs1413148098 989 dbSNP
rs966078945 991 dbSNP
rs1177425042 993 dbSNP
rs1481426582 994 dbSNP
rs927663186 1004 dbSNP
rs1421558928 1005 dbSNP
rs1193127135 1007 dbSNP
rs159529 1007 dbSNP
rs879021747 1007 dbSNP
rs34261806 1008 dbSNP
rs1202920264 1009 dbSNP
rs1440517096 1009 dbSNP
rs1262045198 1010 dbSNP
rs1203913980 1014 dbSNP
rs1325312547 1018 dbSNP
rs1339655593 1022 dbSNP
rs986249952 1023 dbSNP
rs1217537575 1024 dbSNP
rs11337126 1028 dbSNP
rs1230915588 1028 dbSNP
rs1272463425 1028 dbSNP
rs1363213109 1028 dbSNP
rs1410622815 1028 dbSNP
rs1446188554 1028 dbSNP
rs1491108242 1028 dbSNP
rs369866124 1028 dbSNP
rs748445291 1028 dbSNP
rs755417518 1028 dbSNP
rs763738450 1028 dbSNP
rs796584925 1028 dbSNP
rs1318676184 1029 dbSNP
rs869207937 1029 dbSNP
rs1471654800 1030 dbSNP
rs1242284815 1031 dbSNP
rs953708158 1041 dbSNP
rs558086904 1043 dbSNP
rs538246959 1048 dbSNP
rs981858742 1049 dbSNP
rs1203161342 1057 dbSNP
rs1020328509 1060 dbSNP
rs1307573437 1061 dbSNP
rs566173599 1070 dbSNP
rs1227095254 1078 dbSNP
rs974025034 1079 dbSNP
rs1316136049 1096 dbSNP
rs1461503429 1098 dbSNP
rs1489166662 1110 dbSNP
rs547159983 1111 dbSNP
rs1356367524 1125 dbSNP
rs1162838129 1130 dbSNP
rs916245186 1134 dbSNP
rs140779832 1135 dbSNP
rs1446258084 1150 dbSNP
rs534251820 1152 dbSNP
rs1030915081 1154 dbSNP
rs1480790331 1155 dbSNP
rs1234115087 1158 dbSNP
rs1218797343 1163 dbSNP
rs1243079338 1165 dbSNP
rs999308833 1166 dbSNP
rs965193643 1167 dbSNP
rs568609174 1170 dbSNP
rs182360015 1171 dbSNP
rs1224528154 1172 dbSNP
rs1007404050 1177 dbSNP
rs1375884529 1186 dbSNP
rs1012076317 1191 dbSNP
rs893590088 1194 dbSNP
rs189684734 1199 dbSNP
rs1048865371 1200 dbSNP
rs867308487 1202 dbSNP
rs1426254223 1209 dbSNP
rs569376960 1211 dbSNP
rs935218834 1213 dbSNP
rs902458953 1217 dbSNP
rs1409776061 1224 dbSNP
rs995546455 1225 dbSNP
rs1479840554 1230 dbSNP
rs150970482 1231 dbSNP
rs944740812 1233 dbSNP
rs1487627547 1234 dbSNP
rs1436965821 1237 dbSNP
rs1260500396 1239 dbSNP
rs1037293834 1242 dbSNP
rs938791866 1244 dbSNP
rs1363027942 1245 dbSNP
rs1319792516 1250 dbSNP
rs1441474712 1251 dbSNP
rs1351147877 1252 dbSNP
rs1320959941 1255 dbSNP
rs1404449833 1256 dbSNP
rs1222911892 1268 dbSNP
rs765033691 1270 dbSNP
rs1046149105 1276 dbSNP
rs1448034431 1284 dbSNP
rs932089267 1285 dbSNP
rs113665316 1289 dbSNP
rs916356290 1296 dbSNP
rs1470186905 1300 dbSNP
rs747046111 1301 dbSNP
rs936383126 1305 dbSNP
rs1477109917 1306 dbSNP
rs1261698254 1308 dbSNP
rs923826721 1317 dbSNP
rs532541419 1318 dbSNP
rs977982064 1323 dbSNP
rs965160950 1340 dbSNP
rs778737010 1342 dbSNP
rs1324629613 1344 dbSNP
rs1265052358 1347 dbSNP
rs1019421824 1349 dbSNP
rs1023306781 1359 dbSNP
rs985341626 1360 dbSNP
rs954253903 1366 dbSNP
rs1339820042 1368 dbSNP
rs1027111505 1375 dbSNP
rs995878494 1378 dbSNP
rs766665698 1392 dbSNP
rs1015828443 1397 dbSNP
rs1468963028 1397 dbSNP
rs1003137605 1399 dbSNP
rs907482335 1407 dbSNP
rs1044938795 1408 dbSNP
rs760788878 1417 dbSNP
rs1296513425 1422 dbSNP
rs159530 1423 dbSNP
rs1372943972 1426 dbSNP
rs1171750605 1433 dbSNP
rs1430868269 1437 dbSNP
rs1254507033 1441 dbSNP
rs1183412003 1447 dbSNP
rs894879188 1451 dbSNP
rs1245227087 1458 dbSNP
rs142558650 1464 dbSNP
rs1338827323 1474 dbSNP
rs867500506 1475 dbSNP
rs1228043463 1477 dbSNP
rs1309251151 1480 dbSNP
rs373647338 1485 dbSNP
rs923627723 1486 dbSNP
rs1338301899 1490 dbSNP
rs1389119930 1493 dbSNP
rs112431787 1494 dbSNP
rs1395128614 1499 dbSNP
rs1168059501 1501 dbSNP
rs977950746 1508 dbSNP
rs529961216 1534 dbSNP
rs890417369 1539 dbSNP
rs1354815516 1542 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaggguggggguGAGGaca 5'
                        ||||   
Target 5' auuuuauuuuuuccCUCC--- 3'
1 - 18
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3925.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaggguggggguGAGGACa 5'
                        |||||| 
Target 5' auuuuauuuuuuccCUCCUG- 3'
3 - 22
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000455785.2 | 3UTR | AUUUUAUUUUUUCCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000455785.2 | 3UTR | UCAUUUUAUUUUUUCCCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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