pre-miRNA Information
pre-miRNA hsa-mir-4280   
Genomic Coordinates chr5: 87114879 - 87114954
Description Homo sapiens miR-4280 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4280
Sequence 11| GAGUGUAGUUCUGAGCAGAGC |31
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1267452683 6 dbSNP
rs921418201 13 dbSNP
rs975577876 15 dbSNP
rs562687273 20 dbSNP
rs968639930 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SP4   
Synonyms HF1B, SPR-1
Description Sp4 transcription factor
Transcript NM_003112   
Expression
Putative miRNA Targets on SP4
3'UTR of SP4
(miRNA target sites are highlighted)
>SP4|NM_003112|3'UTR
   1 AAAGTTATTTATAACAGAGACCTCTAGTGCTGCACTTGTTTACACACCTTTGAAAATCTGGAAATGGGCTGGTCAAGTGG
  81 ATTACAGAGTAGGAAATTATGTTTTCATTCTTGGCTTCTTTAAGTATTCCAGGGTTTGGGGTCAACACGTGAAGTGTTGA
 161 ATTTTAAAAAATACAAAAAGCAGACTGATGTACTGGAAACAGAAAAGTATTTCCTCCATACTATAAGTTGTAGTTGTTTG
 241 GAAATATATCACATAACCTTTATACAGAATCTTCCCATCTCTTAATATCATGTGTTAACATGTTTAAAAAGACCTTAGTA
 321 GTTTGCAGGCTGGACCTTAATTGGACTTATTTTCTTTGAAAGTACTTTGTTATAAATTCAGTCAGTAATAATTTACGTGT
 401 ATTCTTTTTCTCTATAGCACAGAAAACAGATAGTTAACTGATGATAGGGATAATACTGTATTTCCTTAGCTTGATTTTTG
 481 GAAAATCAACCGAAAATAGTTTGGCCGTCTTTTCTAAATGTTAGAAATTCTTCAACAGTTGAATTAGGTAAGTTCCAAAA
 561 CAGTAATCTGAGATGCATCTCAGATCTTTATTACCACTACATTATAGTAGTGTGTATGCAGACAATCAGTGAAGTCCAAT
 641 TACTTTCTCCATTTGGAGACACAAGAGGAACATAGAGTTAAATCTTAGGTTAAATTTTAGGTTGACACCTTAGGAAAATG
 721 CTGGGAAAAAAATGGTTAAAACAAAACTCATCATAGCTTCAGAAAAATAAAATGAGGCATCTTAACATGCAATGTTCTAA
 801 AGTTAGGATTGATTATATTCCTAACCCTAGGTTGAACCACAAAATTTCATTTAAAATGTTTATATTTGGAAATATTTGCA
 881 TAGAGTGTAAATTGTTCTGTAGTTTCATATTTTGTAAATATGAGTTATGTTGACAATGTGCAGAATTCTTTATGCTTTGA
 961 TGTGGTAGCCAAAGAAAGAATTACACTTTTTTCCAAGGCCAGCAGAAAATTCTCTTTTAACTACATTGTAATTCTTGTTT
1041 TCCTCTACTAAAAATTGGCCAGTCCCATTTTATTTCTAGTGCTATGTAAGAAGGTAATTAGGAATTATAACACAGTAATG
1121 TTTTTATGTTACATCAATAACTGAATTTTCCCTAAAAATTAGCCTAATATATAATAGATATATTATGAAGCAAAACTTTT
1201 ATTTTTGAAAAGGCAGAATAATTTTCAGTGAAGTAAGTGACTAAAGAAAAAAACTATATTATTGTTTATGCAAGGGTCTT
1281 ACAGGAAAGGGTCTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTCTTGCCCAGGCTGGAGTGCAATGGCACGATCT
1361 CAGCTTACTGCAACCGCCGCCTCCCAGGTTCAAGCGATTCTCCTGTCTTAGCCTCCTGAGTAGCTGGGATTAACAGGCGC
1441 CTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTTTCAAACTCC
1521 TGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGGCTAGGAAAG
1601 GGTCTTACTAGGAAAGATGGCCAAAAGTTTCATATGAAAAAAATTGGATTATAAACCAGTAACTTAAATATTAATAAGGA
1681 TATTTTATGTTTTAAAAAAGTATTTACACAGAATCATAATCAGTGAAATTGACCATTTGAAAACTAAAAGTTTTTACCTA
1761 CCTGCTCAATTTATTAACATCATTGCTTTGGGGACTGTTTGAATATAGGTACGTGTTTTCTTGTGCATTCTCTATAATTT
1841 CAGGAAAAGTACTAATGCGAATTCTCTTCCAAAATTGTGATGTTTCTTGTATTTTTGATGAAGGAGAAATACTGTAATGA
1921 TCACTGTTTACACTATGTACACTTTAGGCCAGCCCTTTGTAGCGTTATATAAAACTGAAGGTCTTTTGTGCTTTCAGTTT
2001 GTATAAAAAAGCTTTGAGATTAAAGGAAAAAAAAAATTTTTACACTGTGGTTATAAATTTCAAGTTTCTTAAAGCTTTTG
2081 TAGACTTGTAACAGAGTCTTTAAATTTAAGTTGGATTTTGTAAATTGTTTTGTATATTTTATTTAATGTACTCTTAACAA
2161 CTGATGTATCTGGCTTTAAAACATCAGAATTGGTTTGTTGTTTTGTTTGGTACAGAGGAGCATTTGGTAGTGTTCATTTT
2241 AATTTTATTATATAGGAGCTGAAACATCAAATATATATTTTATCTATCATTATGCTACACAATCAGTGCTATAAATTTTT
2321 TTATGCAAAGAAACTTTCTTAATGTTTTAATCATGTTTCCTCAGAGTGACACTTTTTGTTGTTGTTAATACCAAGTATGA
2401 ACACTCTGCATCATTATTCCATGAACCAGTTCTAATGCAAACCTATGTATGTCCATTAGAAATGGAAGTTATTTTTTAAT
2481 CAACAATGAGGCCTATTATAAATTTATCAGATGAATCTAGATAGCTTTATAGCATATAAAATATGTTAATTTGTGTTAGC
2561 AGGTGCACATTTCACCACTGAAATTAGAAATATTTTGACAGTCTGTTCTGCATACCATTCTGAGTCTACTTTTCTGTCTT
2641 TAGAAGAATCGTAAATTTCAGTGTCCTTTATTTGACTCAGTGGGATATAGCTGTTATAAGTAATAGGGCACAGATGTGCA
2721 GTAGAGTCTTGTTTAATGGCATTTCACTGTTCATTCCCTTTACCACCGTTATAAAACTTTTCTTTATTGTAATTATCAGT
2801 GCAAAGCTATGTATTTATCATGGTAAAACTCCAGTGTTAGAATAGTTTTTTCTTACAGTATACTTTCTTTGGTTAGGTTT
2881 GTGTATGTGTTGCTGATTACATTAGAACTTGATGTTAAGTCATTTATCACACTCTCATGAGAGCAGTAATAAAAGTGTGT
2961 AATCTAGGAGAAAAAGTTAATTTGTCAAACTTAGATAAGCATGATGTTTAGGTCCTATTTTTCAATTTTATAACTGTTTT
3041 ATTGCAACAATATTTGTATTTAAGTCTCCATTTTAATGCCTTGTGGTGTTTTTTTATGCATGTCACTAAGTTGTCATCCC
3121 ACATAAATTGATGTGCAGCATAGGGTATTAAATCTACATAATGATTTTAAAACAGAAATAGTTGATGGTAAAATGTAAAT
3201 GTTTTGCAAAAATTCCTTATAAAAAGTTTTGTAGTAACATTTCACTTGTAAATTTTTTTTGTAAAAAAAAAAAAATGAAA
3281 AAAAAAGATGAATCCAGAAAAAAACCTGTTTCCCATATTCTAGAATTTAGACAATTATTCTGCCAGCAAAGCCTCTGGGG
3361 CTGTAATTGACATTTTTACAGTGCTGATTTGTATAAAATTTGTTTTTTGTGGATTTGGAAATAAAATCATGTACAAGTTG
3441 TTGCCTGCAATAACAATTGCAAGTAACCTATTAAAAATTCCCTTGAGTTTAACATGTTTCATTTAATTATGTATACTATA
3521 AAGCAGCAATAAATTATTTGAACTATCAACCTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgAGACGAGUCUUGAUGUGAg 5'
            ||| ||:  |||||||:| 
Target 5' atTCT-CTTTTAACTACATTg 3'
1009 - 1028 146.00 -13.10
2
miRNA  3' cgagacgagUCUUGAUGUGAg 5'
                   ||||:|||||| 
Target 5' gccaaagaaAGAATTACACTt 3'
968 - 988 144.00 -13.40
3
miRNA  3' cgagacGAG-UCUUGAUGUGAg 5'
                ||| || :||:|||| 
Target 5' agagacCTCTAGTGCTGCACTt 3'
16 - 37 139.00 -13.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30463442 20 COSMIC
COSN30477539 59 COSMIC
COSN26996407 71 COSMIC
COSN30102658 111 COSMIC
COSN30514816 140 COSMIC
COSN30501401 142 COSMIC
COSN6875638 160 COSMIC
COSN9939566 165 COSMIC
COSN9939567 168 COSMIC
COSN2216018 197 COSMIC
COSN2216019 275 COSMIC
COSN31555397 382 COSMIC
COSN31515972 405 COSMIC
COSN32200273 413 COSMIC
COSN8516244 418 COSMIC
COSN31483198 434 COSMIC
COSN20960070 481 COSMIC
COSN8299113 493 COSMIC
COSN17183229 508 COSMIC
COSN30175992 590 COSMIC
COSN28738247 703 COSMIC
COSN31538110 733 COSMIC
COSN31570225 740 COSMIC
COSN31533528 823 COSMIC
COSN31579258 828 COSMIC
COSN31481841 923 COSMIC
COSN31515110 949 COSMIC
COSN31517607 949 COSMIC
COSN31484203 960 COSMIC
COSN22447544 1226 COSMIC
COSN28019516 1247 COSMIC
COSN31532625 1492 COSMIC
COSN30543224 1536 COSMIC
COSN25467940 1584 COSMIC
COSN26507796 1585 COSMIC
COSN26506083 1586 COSMIC
COSN26506065 1590 COSMIC
COSN26001399 1591 COSMIC
COSN31530873 1670 COSMIC
COSN21130619 1674 COSMIC
COSN31484443 1842 COSMIC
COSN26566787 1850 COSMIC
COSN31607224 1865 COSMIC
COSN8299114 1876 COSMIC
COSN32056780 1886 COSMIC
COSN30169041 1978 COSMIC
COSN31547501 2010 COSMIC
COSN28923780 2027 COSMIC
COSN31556558 2038 COSMIC
COSN31528221 2068 COSMIC
COSN31528367 2096 COSMIC
COSN30543238 2154 COSMIC
COSN30542661 2257 COSMIC
COSN31591307 2289 COSMIC
COSN30539309 2326 COSMIC
COSN5654349 2464 COSMIC
COSN14891434 2532 COSMIC
COSN31962748 2768 COSMIC
COSN31480422 3162 COSMIC
COSN19033100 3198 COSMIC
COSN19032942 3200 COSMIC
COSN19033003 3234 COSMIC
COSN20103912 3262 COSMIC
COSN19656351 3263 COSMIC
COSN20103913 3276 COSMIC
COSN28250114 3277 COSMIC
COSN23735927 3370 COSMIC
COSN28150640 3410 COSMIC
rs7798894 2109 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs967364121 3 dbSNP
rs759959465 8 dbSNP
rs765455982 12 dbSNP
rs775242597 20 dbSNP
rs762467671 21 dbSNP
rs1355099498 26 dbSNP
rs763820731 27 dbSNP
rs1348054704 31 dbSNP
rs1458055399 32 dbSNP
rs1291504452 36 dbSNP
rs916421866 41 dbSNP
rs1369477123 42 dbSNP
rs1223690822 50 dbSNP
rs548589125 53 dbSNP
rs1487945598 77 dbSNP
rs1265564403 84 dbSNP
rs568598351 97 dbSNP
rs948782805 99 dbSNP
rs1045830434 101 dbSNP
rs1239978276 109 dbSNP
rs748534375 111 dbSNP
rs1413635411 114 dbSNP
rs1309590244 117 dbSNP
rs907191370 130 dbSNP
rs746648420 134 dbSNP
rs1407977212 135 dbSNP
rs942743669 142 dbSNP
rs1426647932 149 dbSNP
rs537566582 150 dbSNP
rs1037026387 154 dbSNP
rs1440231122 157 dbSNP
rs898746141 168 dbSNP
rs768352249 173 dbSNP
rs1432272086 174 dbSNP
rs1028875820 176 dbSNP
rs889974459 177 dbSNP
rs922798789 181 dbSNP
rs3735440 184 dbSNP
rs1284684879 189 dbSNP
rs552855016 190 dbSNP
rs571032070 195 dbSNP
rs1231571612 196 dbSNP
rs1330835281 199 dbSNP
rs887329763 200 dbSNP
rs1218965562 205 dbSNP
rs1284179930 206 dbSNP
rs376529085 208 dbSNP
rs977745865 215 dbSNP
rs1486927368 218 dbSNP
rs1297640419 219 dbSNP
rs1032051317 224 dbSNP
rs1170695847 227 dbSNP
rs1465373785 234 dbSNP
rs1377923716 237 dbSNP
rs138272201 245 dbSNP
rs149282756 254 dbSNP
rs544184877 270 dbSNP
rs904950564 279 dbSNP
rs573447131 285 dbSNP
rs564168103 288 dbSNP
rs1264508932 290 dbSNP
rs1034774067 294 dbSNP
rs1396058457 297 dbSNP
rs1199185857 300 dbSNP
rs1483391167 305 dbSNP
rs896338261 307 dbSNP
rs183606184 309 dbSNP
rs1245165036 312 dbSNP
rs77041788 315 dbSNP
rs1172928171 331 dbSNP
rs967899229 334 dbSNP
rs1328223114 337 dbSNP
rs978737656 343 dbSNP
rs940146142 351 dbSNP
rs1406623485 358 dbSNP
rs1167944938 374 dbSNP
rs1178300475 376 dbSNP
rs1371099107 379 dbSNP
rs1036951439 382 dbSNP
rs1170888183 384 dbSNP
rs1366135065 390 dbSNP
rs898509240 397 dbSNP
rs773420262 398 dbSNP
rs1050027046 402 dbSNP
rs574067337 404 dbSNP
rs964073805 405 dbSNP
rs1321044451 410 dbSNP
rs1257686458 412 dbSNP
rs1215320441 413 dbSNP
rs1330098600 415 dbSNP
rs188144611 417 dbSNP
rs975924146 426 dbSNP
rs866053420 447 dbSNP
rs1244040130 463 dbSNP
rs1008384122 470 dbSNP
rs563190339 472 dbSNP
rs1274467237 475 dbSNP
rs1444337186 483 dbSNP
rs1399205462 487 dbSNP
rs1343542724 490 dbSNP
rs372513858 491 dbSNP
rs934168722 492 dbSNP
rs1265423481 493 dbSNP
rs1472778993 506 dbSNP
rs902262123 507 dbSNP
rs771606160 510 dbSNP
rs564548067 514 dbSNP
rs908798896 519 dbSNP
rs1205564667 523 dbSNP
rs1031979467 531 dbSNP
rs1254629988 532 dbSNP
rs760070361 534 dbSNP
rs144500879 536 dbSNP
rs1360195584 544 dbSNP
rs1038626035 546 dbSNP
rs1431574812 549 dbSNP
rs1375960807 564 dbSNP
rs926321221 564 dbSNP
rs937674605 569 dbSNP
rs545671767 577 dbSNP
rs1443986274 582 dbSNP
rs1347720760 591 dbSNP
rs1322416092 594 dbSNP
rs1056628833 602 dbSNP
rs896212830 605 dbSNP
rs1009357533 606 dbSNP
rs559636709 608 dbSNP
rs1389437831 610 dbSNP
rs1405581556 611 dbSNP
rs1418396437 613 dbSNP
rs1407782989 626 dbSNP
rs961406842 632 dbSNP
rs533160749 637 dbSNP
rs1471339265 638 dbSNP
rs972804624 640 dbSNP
rs1042168184 644 dbSNP
rs919902997 646 dbSNP
rs528374601 650 dbSNP
rs1198358055 663 dbSNP
rs931310738 663 dbSNP
rs1294033832 671 dbSNP
rs1362589973 672 dbSNP
rs1050217956 673 dbSNP
rs903686329 674 dbSNP
rs1000776222 676 dbSNP
rs1433299492 685 dbSNP
rs1284742412 722 dbSNP
rs770891360 724 dbSNP
rs1365159224 726 dbSNP
rs1273891088 727 dbSNP
rs1405103531 739 dbSNP
rs147995314 745 dbSNP
rs964417958 747 dbSNP
rs1418455969 748 dbSNP
rs143442504 751 dbSNP
rs1030181101 759 dbSNP
rs57898832 767 dbSNP
rs1355797676 768 dbSNP
rs1210522059 770 dbSNP
rs760870640 775 dbSNP
rs1275205845 777 dbSNP
rs765795493 778 dbSNP
rs908745043 782 dbSNP
rs1271202145 787 dbSNP
rs902692959 788 dbSNP
rs147135782 793 dbSNP
rs1430204561 796 dbSNP
rs570851935 800 dbSNP
rs1367832677 803 dbSNP
rs1217783789 804 dbSNP
rs533613577 808 dbSNP
rs1277642684 821 dbSNP
rs893572153 826 dbSNP
rs546861600 831 dbSNP
rs1472803409 834 dbSNP
rs1325210462 835 dbSNP
rs566850261 843 dbSNP
rs1385931361 846 dbSNP
rs937692924 876 dbSNP
rs1289974383 877 dbSNP
rs1433501418 879 dbSNP
rs1357843944 881 dbSNP
rs1056092612 885 dbSNP
rs1470448477 887 dbSNP
rs192908793 892 dbSNP
rs1023759123 910 dbSNP
rs917665576 910 dbSNP
rs1456425664 922 dbSNP
rs1420229833 923 dbSNP
rs1188275763 925 dbSNP
rs1482225116 926 dbSNP
rs555604881 927 dbSNP
rs945160323 928 dbSNP
rs567721542 929 dbSNP
rs1255775223 934 dbSNP
rs1217567031 937 dbSNP
rs1320274562 949 dbSNP
rs1307643323 950 dbSNP
rs1003421328 955 dbSNP
rs1014681870 964 dbSNP
rs1377581357 966 dbSNP
rs1384401794 968 dbSNP
rs1336600202 973 dbSNP
rs1453860325 975 dbSNP
rs1408677814 981 dbSNP
rs1329562956 984 dbSNP
rs903717502 985 dbSNP
rs961870781 986 dbSNP
rs1000639157 988 dbSNP
rs1422094710 1001 dbSNP
rs1384561771 1014 dbSNP
rs1184066178 1022 dbSNP
rs1446231983 1024 dbSNP
rs1311129184 1025 dbSNP
rs919996655 1029 dbSNP
rs866141986 1030 dbSNP
rs1245559163 1035 dbSNP
rs952941947 1056 dbSNP
rs1295222412 1060 dbSNP
rs184366177 1061 dbSNP
rs753909966 1063 dbSNP
rs1247262907 1079 dbSNP
rs1385515778 1080 dbSNP
rs1268522380 1088 dbSNP
rs1391081776 1090 dbSNP
rs111643522 1093 dbSNP
rs1041334565 1104 dbSNP
rs924084930 1106 dbSNP
rs1364967304 1109 dbSNP
rs1228987067 1114 dbSNP
rs1164210039 1118 dbSNP
rs1426461516 1131 dbSNP
rs764618001 1133 dbSNP
rs1442959318 1142 dbSNP
rs935469993 1144 dbSNP
rs149786651 1146 dbSNP
rs78977220 1151 dbSNP
rs1189035584 1152 dbSNP
rs1490044087 1156 dbSNP
rs1291861304 1159 dbSNP
rs1012410805 1161 dbSNP
rs1159513834 1163 dbSNP
rs955352013 1167 dbSNP
rs1455605190 1170 dbSNP
rs1238814171 1171 dbSNP
rs1044699403 1172 dbSNP
rs1309428475 1174 dbSNP
rs1385305372 1176 dbSNP
rs1303816704 1179 dbSNP
rs1301489046 1182 dbSNP
rs546009936 1185 dbSNP
rs1402057804 1187 dbSNP
rs1004340563 1191 dbSNP
rs1015669587 1207 dbSNP
rs571065126 1214 dbSNP
rs573043493 1217 dbSNP
rs1365255029 1218 dbSNP
rs974214969 1219 dbSNP
rs1348778984 1222 dbSNP
rs185019882 1227 dbSNP
rs1173596314 1240 dbSNP
rs1269032145 1247 dbSNP
rs539202276 1247 dbSNP
rs1289148827 1250 dbSNP
rs551771029 1257 dbSNP
rs561914558 1258 dbSNP
rs1486995949 1260 dbSNP
rs1260282034 1261 dbSNP
rs530970803 1266 dbSNP
rs926870907 1275 dbSNP
rs959615091 1277 dbSNP
rs1204995421 1283 dbSNP
rs1318988965 1292 dbSNP
rs1351934193 1292 dbSNP
rs760997341 1293 dbSNP
rs1317559990 1294 dbSNP
rs1382703423 1294 dbSNP
rs541943749 1294 dbSNP
rs776947346 1294 dbSNP
rs796301654 1294 dbSNP
rs1386936587 1301 dbSNP
rs1003390476 1303 dbSNP
rs79579640 1310 dbSNP
rs1469066452 1311 dbSNP
rs76797282 1312 dbSNP
rs1268921240 1313 dbSNP
rs1345595978 1315 dbSNP
rs1476559960 1320 dbSNP
rs1193168524 1321 dbSNP
rs758268627 1324 dbSNP
rs1264347745 1325 dbSNP
rs544269224 1326 dbSNP
rs992811512 1327 dbSNP
rs1014775172 1329 dbSNP
rs917628800 1333 dbSNP
rs189398913 1335 dbSNP
rs945024013 1338 dbSNP
rs994622017 1345 dbSNP
rs1174367848 1347 dbSNP
rs1027941386 1349 dbSNP
rs1328094948 1350 dbSNP
rs1312772642 1356 dbSNP
rs977836999 1357 dbSNP
rs533246224 1365 dbSNP
rs925002333 1367 dbSNP
rs936529118 1374 dbSNP
rs1038829690 1376 dbSNP
rs1476087506 1377 dbSNP
rs1375305615 1379 dbSNP
rs900427151 1380 dbSNP
rs1444402304 1384 dbSNP
rs1176143126 1388 dbSNP
rs1244122302 1396 dbSNP
rs547041880 1397 dbSNP
rs766897326 1404 dbSNP
rs1052114485 1405 dbSNP
rs113365175 1407 dbSNP
rs1385352479 1408 dbSNP
rs1245147965 1413 dbSNP
rs144513191 1420 dbSNP
rs1316869471 1422 dbSNP
rs1439627327 1429 dbSNP
rs1015704268 1432 dbSNP
rs1334838383 1435 dbSNP
rs1329054999 1436 dbSNP
rs1312621491 1437 dbSNP
rs1236243330 1439 dbSNP
rs898542355 1440 dbSNP
rs996086040 1441 dbSNP
rs1341402606 1444 dbSNP
rs368054689 1456 dbSNP
rs1185776997 1458 dbSNP
rs915401432 1461 dbSNP
rs947799571 1463 dbSNP
rs1182719039 1472 dbSNP
rs959801519 1482 dbSNP
rs181723908 1491 dbSNP
rs1487282132 1492 dbSNP
rs906304912 1500 dbSNP
rs1267091827 1505 dbSNP
rs76921536 1510 dbSNP
rs75225826 1512 dbSNP
rs939007812 1514 dbSNP
rs1025632561 1515 dbSNP
rs1293809072 1517 dbSNP
rs1221883675 1518 dbSNP
rs55672935 1519 dbSNP
rs1279771219 1520 dbSNP
rs1171190367 1521 dbSNP
rs1443913780 1526 dbSNP
rs897744196 1528 dbSNP
rs977706037 1530 dbSNP
rs1356423770 1533 dbSNP
rs1456574558 1546 dbSNP
rs186945589 1547 dbSNP
rs749293683 1548 dbSNP
rs556663510 1556 dbSNP
rs1442773285 1569 dbSNP
rs74894957 1574 dbSNP
rs374731605 1575 dbSNP
rs921827965 1576 dbSNP
rs965484605 1584 dbSNP
rs1229102490 1585 dbSNP
rs1490520905 1585 dbSNP
rs76064123 1586 dbSNP
rs1319461234 1587 dbSNP
rs1213471906 1589 dbSNP
rs75572502 1590 dbSNP
rs376094534 1591 dbSNP
rs1339333504 1594 dbSNP
rs1216356416 1595 dbSNP
rs1284838212 1596 dbSNP
rs886328450 1597 dbSNP
rs1265624444 1598 dbSNP
rs990150984 1603 dbSNP
rs1282198860 1607 dbSNP
rs940004913 1608 dbSNP
rs948200779 1609 dbSNP
rs1295872738 1611 dbSNP
rs980991281 1616 dbSNP
rs1345021698 1619 dbSNP
rs1469553835 1621 dbSNP
rs1215918623 1623 dbSNP
rs1036999370 1624 dbSNP
rs927695486 1633 dbSNP
rs939143600 1634 dbSNP
rs1449393876 1635 dbSNP
rs1187678365 1637 dbSNP
rs1427346315 1645 dbSNP
rs75207875 1648 dbSNP
rs897503959 1652 dbSNP
rs930533692 1653 dbSNP
rs778726365 1672 dbSNP
rs1459773491 1676 dbSNP
rs1049470941 1680 dbSNP
rs1203901692 1688 dbSNP
rs995643156 1700 dbSNP
rs1213373265 1701 dbSNP
rs1463253803 1706 dbSNP
rs1318257709 1710 dbSNP
rs1271238523 1711 dbSNP
rs1437745080 1717 dbSNP
rs1404278111 1721 dbSNP
rs747165358 1722 dbSNP
rs1431371350 1727 dbSNP
rs1361013292 1736 dbSNP
rs1018815729 1740 dbSNP
rs1290500652 1741 dbSNP
rs895343121 1744 dbSNP
rs1420166188 1745 dbSNP
rs1014140877 1749 dbSNP
rs189573603 1753 dbSNP
rs1442622047 1758 dbSNP
rs1376925767 1763 dbSNP
rs536612844 1767 dbSNP
rs1323910193 1770 dbSNP
rs1227199224 1778 dbSNP
rs1025197356 1780 dbSNP
rs573076005 1781 dbSNP
rs1484011620 1806 dbSNP
rs1293428020 1807 dbSNP
rs1336454849 1808 dbSNP
rs966896333 1813 dbSNP
rs74792704 1814 dbSNP
rs1032005075 1821 dbSNP
rs1216956596 1830 dbSNP
rs555738358 1833 dbSNP
rs776520328 1835 dbSNP
rs1314763875 1843 dbSNP
rs1482577412 1847 dbSNP
rs181112423 1853 dbSNP
rs957942463 1854 dbSNP
rs1296617792 1859 dbSNP
rs376788899 1860 dbSNP
rs1355182613 1862 dbSNP
rs1418719479 1871 dbSNP
rs564345110 1876 dbSNP
rs1422644253 1886 dbSNP
rs1023167534 1887 dbSNP
rs1030977030 1910 dbSNP
rs921665304 1911 dbSNP
rs1401007918 1913 dbSNP
rs1010930201 1915 dbSNP
rs1320071255 1919 dbSNP
rs1357335916 1921 dbSNP
rs1253324397 1934 dbSNP
rs369494515 1942 dbSNP
rs1207976819 1946 dbSNP
rs954582085 1950 dbSNP
rs1447249568 1955 dbSNP
rs1357880129 1964 dbSNP
rs1291638795 1965 dbSNP
rs987670485 1968 dbSNP
rs1022955496 1988 dbSNP
rs1323818014 1989 dbSNP
rs1305137193 1990 dbSNP
rs907799772 1993 dbSNP
rs775262990 1995 dbSNP
rs940621984 1997 dbSNP
rs1309899841 2015 dbSNP
rs754638505 2022 dbSNP
rs1037619871 2025 dbSNP
rs1403138518 2025 dbSNP
rs112390579 2026 dbSNP
rs140715082 2027 dbSNP
rs566979904 2027 dbSNP
rs919946789 2028 dbSNP
rs969700708 2033 dbSNP
rs981344563 2035 dbSNP
rs1413578615 2037 dbSNP
rs533323657 2037 dbSNP
rs1055228053 2038 dbSNP
rs971802261 2039 dbSNP
rs918900470 2051 dbSNP
rs930296126 2052 dbSNP
rs1048750364 2056 dbSNP
rs910455528 2064 dbSNP
rs1238653199 2074 dbSNP
rs1287244003 2093 dbSNP
rs1221782046 2097 dbSNP
rs1344893598 2104 dbSNP
rs943341806 2107 dbSNP
rs1040575725 2108 dbSNP
rs7798894 2109 dbSNP
rs1286847839 2111 dbSNP
rs998245679 2121 dbSNP
rs1052499389 2132 dbSNP
rs892583058 2133 dbSNP
rs1479825822 2137 dbSNP
rs1013758541 2139 dbSNP
rs552797931 2149 dbSNP
rs1200259975 2151 dbSNP
rs1435395865 2159 dbSNP
rs1011316197 2165 dbSNP
rs1204941563 2166 dbSNP
rs1210118433 2169 dbSNP
rs1270260974 2171 dbSNP
rs879641628 2172 dbSNP
rs1046516857 2179 dbSNP
rs1275487532 2180 dbSNP
rs149917928 2187 dbSNP
rs1324646579 2192 dbSNP
rs999774163 2197 dbSNP
rs186029474 2209 dbSNP
rs1390479601 2210 dbSNP
rs957755760 2221 dbSNP
rs1406226819 2230 dbSNP
rs772790085 2234 dbSNP
rs1173850472 2236 dbSNP
rs960880805 2243 dbSNP
rs1371867101 2251 dbSNP
rs972230951 2252 dbSNP
rs996217654 2253 dbSNP
rs1182028606 2260 dbSNP
rs984863359 2267 dbSNP
rs910224665 2269 dbSNP
rs10677507 2271 dbSNP
rs1422880886 2276 dbSNP
rs549150840 2278 dbSNP
rs1337464990 2280 dbSNP
rs1250695403 2281 dbSNP
rs1413825124 2283 dbSNP
rs562872945 2287 dbSNP
rs1040332255 2289 dbSNP
rs1174118458 2289 dbSNP
rs1451594224 2293 dbSNP
rs923206132 2297 dbSNP
rs1335718450 2299 dbSNP
rs1389186235 2303 dbSNP
rs1395142018 2310 dbSNP
rs1168580595 2316 dbSNP
rs1377197555 2318 dbSNP
rs1427214032 2325 dbSNP
rs1392458586 2327 dbSNP
rs1162094316 2331 dbSNP
rs1444335318 2335 dbSNP
rs954576334 2338 dbSNP
rs1238279049 2344 dbSNP
rs1189798472 2350 dbSNP
rs1436218407 2353 dbSNP
rs1249892855 2354 dbSNP
rs1306901825 2363 dbSNP
rs1289446970 2373 dbSNP
rs1344269063 2373 dbSNP
rs1244993548 2375 dbSNP
rs1356706935 2376 dbSNP
rs1335963384 2380 dbSNP
rs1236420170 2381 dbSNP
rs1334714132 2381 dbSNP
rs987209919 2391 dbSNP
rs907748931 2395 dbSNP
rs961854095 2398 dbSNP
rs934466969 2402 dbSNP
rs1052973108 2408 dbSNP
rs145259794 2409 dbSNP
rs920476587 2417 dbSNP
rs552018573 2420 dbSNP
rs879390229 2422 dbSNP
rs1363399084 2429 dbSNP
rs1183015581 2441 dbSNP
rs1484045402 2444 dbSNP
rs1266690215 2447 dbSNP
rs1221652696 2454 dbSNP
rs1452026832 2466 dbSNP
rs1291738035 2467 dbSNP
rs1383660673 2472 dbSNP
rs1055494798 2473 dbSNP
rs1044084284 2478 dbSNP
rs905205796 2480 dbSNP
rs1229707650 2485 dbSNP
rs189615228 2487 dbSNP
rs1203083334 2492 dbSNP
rs1272427666 2498 dbSNP
rs1002847406 2499 dbSNP
rs916680193 2502 dbSNP
rs1325906209 2506 dbSNP
rs763611620 2510 dbSNP
rs1035216824 2511 dbSNP
rs539375576 2518 dbSNP
rs1160098358 2521 dbSNP
rs1046463902 2522 dbSNP
rs1427278110 2526 dbSNP
rs902715095 2526 dbSNP
rs1478299586 2541 dbSNP
rs549505108 2541 dbSNP
rs951849313 2543 dbSNP
rs546762094 2544 dbSNP
rs999636097 2545 dbSNP
rs1320869747 2546 dbSNP
rs1053979913 2554 dbSNP
rs1219198423 2558 dbSNP
rs1368944910 2560 dbSNP
rs1277061680 2566 dbSNP
rs894026581 2572 dbSNP
rs764524135 2578 dbSNP
rs1321541309 2580 dbSNP
rs995863550 2586 dbSNP
rs1427800583 2587 dbSNP
rs1404056534 2604 dbSNP
rs1029109366 2609 dbSNP
rs1415059640 2610 dbSNP
rs1427191982 2613 dbSNP
rs1184638067 2615 dbSNP
rs964389346 2616 dbSNP
rs1248393191 2618 dbSNP
rs890124927 2629 dbSNP
rs1190161322 2642 dbSNP
rs1167386006 2644 dbSNP
rs1396679268 2646 dbSNP
rs1459675518 2650 dbSNP
rs774888339 2651 dbSNP
rs566560967 2652 dbSNP
rs961883505 2657 dbSNP
rs1210224309 2667 dbSNP
rs1348948434 2670 dbSNP
rs1440578191 2673 dbSNP
rs1281435172 2677 dbSNP
rs973208456 2681 dbSNP
rs1341960451 2686 dbSNP
rs1430254979 2688 dbSNP
rs1380879134 2698 dbSNP
rs761323353 2698 dbSNP
rs958839965 2705 dbSNP
rs535680001 2709 dbSNP
rs555577529 2713 dbSNP
rs1429000976 2722 dbSNP
rs916610344 2728 dbSNP
rs1390602006 2731 dbSNP
rs914419651 2732 dbSNP
rs2285941 2735 dbSNP
rs1043835581 2738 dbSNP
rs905299832 2740 dbSNP
rs938001106 2741 dbSNP
rs1230659629 2749 dbSNP
rs1203689554 2750 dbSNP
rs1483035734 2753 dbSNP
rs1174386631 2754 dbSNP
rs1056426579 2768 dbSNP
rs767417923 2769 dbSNP
rs1357650905 2773 dbSNP
rs36028676 2778 dbSNP
rs749840876 2778 dbSNP
rs1406380752 2786 dbSNP
rs1229087171 2810 dbSNP
rs1214073590 2827 dbSNP
rs923999266 2843 dbSNP
rs935521618 2848 dbSNP
rs182135386 2851 dbSNP
rs186411597 2863 dbSNP
rs1192456717 2864 dbSNP
rs1371112603 2864 dbSNP
rs141278918 2867 dbSNP
rs190860187 2868 dbSNP
rs1476071482 2874 dbSNP
rs1165104824 2890 dbSNP
rs1026410068 2905 dbSNP
rs1160983990 2917 dbSNP
rs1412560495 2927 dbSNP
rs577988071 2932 dbSNP
rs1326990893 2937 dbSNP
rs1454740147 2938 dbSNP
rs893965692 2941 dbSNP
rs1253167328 2945 dbSNP
rs1207910707 2948 dbSNP
rs1397217351 2950 dbSNP
rs760231295 2952 dbSNP
rs1433366471 2955 dbSNP
rs1006823020 2956 dbSNP
rs1050680686 2960 dbSNP
rs1017340492 2962 dbSNP
rs114618482 2963 dbSNP
rs1008537488 2966 dbSNP
rs964851433 2974 dbSNP
rs1014698601 2976 dbSNP
rs1030005410 2979 dbSNP
rs1293930213 2991 dbSNP
rs183630057 2996 dbSNP
rs988741099 3002 dbSNP
rs994678774 3031 dbSNP
rs1413512365 3032 dbSNP
rs1282544795 3035 dbSNP
rs1431911824 3045 dbSNP
rs143629275 3051 dbSNP
rs914367674 3067 dbSNP
rs1489637814 3083 dbSNP
rs200714156 3083 dbSNP
rs1208332601 3086 dbSNP
rs1329983416 3087 dbSNP
rs1231112578 3089 dbSNP
rs980373281 3089 dbSNP
rs765933884 3090 dbSNP
rs938138552 3112 dbSNP
rs866788810 3114 dbSNP
rs1359593667 3129 dbSNP
rs958564474 3139 dbSNP
rs1319539899 3141 dbSNP
rs1457420733 3159 dbSNP
rs1463335079 3161 dbSNP
rs1204337223 3165 dbSNP
rs201884333 3174 dbSNP
rs929533969 3176 dbSNP
rs1465064960 3180 dbSNP
rs1448685495 3185 dbSNP
rs1047955815 3190 dbSNP
rs562760299 3199 dbSNP
rs1184740625 3203 dbSNP
rs991841363 3208 dbSNP
rs1188214147 3210 dbSNP
rs1465540918 3215 dbSNP
rs1250083955 3231 dbSNP
rs1416613988 3233 dbSNP
rs1198817743 3235 dbSNP
rs1344322581 3236 dbSNP
rs1256583568 3239 dbSNP
rs888052927 3244 dbSNP
rs1339859993 3247 dbSNP
rs1024214607 3249 dbSNP
rs1006380127 3253 dbSNP
rs201595143 3253 dbSNP
rs1409314425 3257 dbSNP
rs748986022 3258 dbSNP
rs1158371722 3259 dbSNP
rs1402279560 3260 dbSNP
rs1491516278 3260 dbSNP
rs1384463805 3261 dbSNP
rs1468002460 3261 dbSNP
rs551916142 3261 dbSNP
rs1392265953 3262 dbSNP
rs1441970986 3262 dbSNP
rs55765820 3262 dbSNP
rs1335661190 3263 dbSNP
rs56412068 3263 dbSNP
rs67639352 3263 dbSNP
rs1407403979 3266 dbSNP
rs1332273854 3273 dbSNP
rs1354967696 3275 dbSNP
rs762558189 3275 dbSNP
rs1161724902 3276 dbSNP
rs55762826 3276 dbSNP
rs1364967532 3277 dbSNP
rs1039648829 3278 dbSNP
rs1369227949 3278 dbSNP
rs1471618604 3278 dbSNP
rs900210079 3278 dbSNP
rs1295281767 3279 dbSNP
rs1327385225 3282 dbSNP
rs970716792 3282 dbSNP
rs997274788 3283 dbSNP
rs982054934 3286 dbSNP
rs1287430904 3288 dbSNP
rs1208975980 3289 dbSNP
rs924031895 3296 dbSNP
rs1237996819 3297 dbSNP
rs1285528164 3298 dbSNP
rs935451263 3301 dbSNP
rs955709598 3308 dbSNP
rs1410955917 3312 dbSNP
rs1352743740 3323 dbSNP
rs1322026082 3324 dbSNP
rs989577011 3329 dbSNP
rs531895781 3334 dbSNP
rs1198717724 3342 dbSNP
rs1391741507 3345 dbSNP
rs1167284577 3356 dbSNP
rs932155754 3359 dbSNP
rs753749826 3362 dbSNP
rs1485673501 3370 dbSNP
rs1182859406 3373 dbSNP
rs551793529 3377 dbSNP
rs1473549356 3380 dbSNP
rs565567369 3382 dbSNP
rs1244858687 3392 dbSNP
rs754945665 3398 dbSNP
rs1451896816 3405 dbSNP
rs1291659941 3410 dbSNP
rs1009930573 3414 dbSNP
rs144278898 3419 dbSNP
rs188477424 3431 dbSNP
rs969075884 3432 dbSNP
rs979958807 3434 dbSNP
rs1273529383 3445 dbSNP
rs1436215581 3457 dbSNP
rs1181491456 3460 dbSNP
rs1332038090 3464 dbSNP
rs927124747 3465 dbSNP
rs959417220 3468 dbSNP
rs944355964 3472 dbSNP
rs778636132 3478 dbSNP
rs1388130967 3483 dbSNP
rs1160028690 3494 dbSNP
rs992218567 3495 dbSNP
rs918023015 3509 dbSNP
rs929293536 3514 dbSNP
rs1035994502 3519 dbSNP
rs1254620415 3524 dbSNP
rs1186328943 3530 dbSNP
rs1464187144 3532 dbSNP
rs76463285 3544 dbSNP
rs1435377861 3546 dbSNP
rs1309864759 3547 dbSNP
rs994629690 3548 dbSNP
rs1039168736 3552 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgagacgagucuuGAUGUGAg 5'
                       :|||||| 
Target 5' ------------uUUACACUa 3'
1 - 9
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6671.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6671.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_003112 | 3UTR | CUUCCAAAAUUGUGAUGUUUCUUGUAUUUUUGAUGAAGGAGAAAUACUGUAAUGAUCACUGUUUACACUAUGUACACUUUAGGCCAGCCCUUUGUAGCGUUAUAUAAAACUGAAGGUCUUUUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_003112 | 3UTR | CACUGUUUACACUAUGUACACUUUAGGCCAGCCCUUUGUAGCGUUAUAUAAAACUGAAGGUCUUUUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_003112 | 3UTR | GAUCACUGUUUACACUAUGUACACUUUAGGCCAGCCCUUUGUAGCGUUAUAUAAAACUGAAGGUCUUUUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_003112 | 3UTR | UUUACACUAUGUACACUUUAGGCCAGCCCUUUGUAGCGUUAUAUAAAACUGAAGGUCUUUUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_003112 | 3UTR | UUGUGAUGUUUCUUGUAUUUUUGAUGAAGGAGAAAUACUGUAAUGAUCACUGUUUACACUAUGUACACUUUAGGCCAGCCCUUUGUAGCGUUAUAUAAAACUGAAGGUCUUUUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000222584.3 | 3UTR | UUUACACUAUGUACACUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000222584.3 | 3UTR | UUUACACUAUGUACACUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000222584.3 | 3UTR | UUUACACUAUGUACACUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000222584.3 | 3UTR | UUUACACUAUGUACACUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-4280 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065612 DAZAP2 DAZ associated protein 2 2 10
MIRT084985 BACH1 BTB domain and CNC homolog 1 2 2
MIRT088053 UBXN2A UBX domain protein 2A 2 4
MIRT097327 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT099148 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT127042 FAM208B family with sequence similarity 208 member B 2 4
MIRT140479 BNIP2 BCL2 interacting protein 2 2 6
MIRT154889 GNAS GNAS complex locus 2 4
MIRT187983 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT190440 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT240673 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT295049 EVI5L ecotropic viral integration site 5 like 2 2
MIRT324749 ACER2 alkaline ceramidase 2 2 2
MIRT366075 FAM127A retrotransposon Gag like 8C 2 4
MIRT442625 LOX lysyl oxidase 2 2
MIRT445224 TYRP1 tyrosinase related protein 1 2 2
MIRT448967 CCNT2 cyclin T2 2 4
MIRT450137 PFN4 profilin family member 4 2 2
MIRT464350 USP46 ubiquitin specific peptidase 46 2 2
MIRT470460 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT473691 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT480188 CALM2 calmodulin 2 2 6
MIRT486355 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT486708 TROVE2 TROVE domain family member 2 2 4
MIRT488337 SCD stearoyl-CoA desaturase 2 2
MIRT489322 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT491791 ZNF24 zinc finger protein 24 2 2
MIRT491970 USP37 ubiquitin specific peptidase 37 2 2
MIRT492029 TWF1 twinfilin actin binding protein 1 2 4
MIRT492063 TMEM245 transmembrane protein 245 2 2
MIRT492247 SLC39A9 solute carrier family 39 member 9 2 2
MIRT492254 SLC35F5 solute carrier family 35 member F5 2 2
MIRT492592 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493436 KAT7 lysine acetyltransferase 7 2 2
MIRT493470 IPMK inositol polyphosphate multikinase 2 2
MIRT493639 HECTD1 HECT domain E3 ubiquitin protein ligase 1 2 2
MIRT493919 FAM127B retrotransposon Gag like 8A 2 4
MIRT494639 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT500032 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT504589 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2 4
MIRT505535 SP4 Sp4 transcription factor 2 6
MIRT507539 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 6
MIRT508846 TMCO1 transmembrane and coiled-coil domains 1 2 4
MIRT510488 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT511402 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT523252 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT525939 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT531453 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT533317 UNKL unkempt family like zinc finger 2 2
MIRT541034 STRBP spermatid perinuclear RNA binding protein 2 8
MIRT546734 RNF217 ring finger protein 217 2 2
MIRT555125 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT556105 MOAP1 modulator of apoptosis 1 2 2
MIRT560205 AK4 adenylate kinase 4 2 2
MIRT561087 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT566967 LBR lamin B receptor 2 2
MIRT567344 H3F3B H3 histone family member 3B 2 2
MIRT567863 DCAF12 DDB1 and CUL4 associated factor 12 2 2
MIRT574449 SCML2 Scm polycomb group protein like 2 2 2
MIRT575700 Map1b microtubule-associated protein 1B 2 2
MIRT651432 YIPF6 Yip1 domain family member 6 2 2
MIRT659728 CCDC93 coiled-coil domain containing 93 2 2
MIRT686937 SFT2D3 SFT2 domain containing 3 2 2
MIRT699385 SLC30A6 solute carrier family 30 member 6 2 2
MIRT710287 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT715123 PANK3 pantothenate kinase 3 2 2
MIRT721847 VLDLR very low density lipoprotein receptor 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4280 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4280 Platinum 23939 resistant tissue
hsa-miR-4280 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4280 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4280 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

Error report submission