pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol PPP6C   
Synonyms PP6, PP6C
Description protein phosphatase 6 catalytic subunit
Transcript NM_001123355   
Other Transcripts NM_001123369 , NM_002721   
Expression
Putative miRNA Targets on PPP6C
3'UTR of PPP6C
(miRNA target sites are highlighted)
>PPP6C|NM_001123355|3'UTR
   1 GGCCTTCGCCCATCCTGCTGACCCATTTTTCTGCCCTCTTCTTACCCCAATTTTCTTGTATTACCCTCTACAATATACTT
  81 TTTATTGAGCACTTTGCTGCTGAAATGCTGCCTCTTGCCTTTTTTTTTTTAAATTTTAAATTATCTAAATTTATTGTTTG
 161 TTGTGGTGTCTATAGCAAAGTTTTTCTATCAATTTTCCCCCATCCCATCCCCACCCTGGACTCATTTGAGAAGACTTGAG
 241 AAATGTCTTAATACTCACACTGCTGCATGTAGCTCTTGCTTATTTACTGGTCTGGGAAACAGGATGTGTTTCCTTTTTTT
 321 AAAAGCCAATTGACAGATTACACCTAAATACTCCTCCTTTTGTATCATTCAGCCTTTTGTTTTAGTTTGGTAAGTTTTAA
 401 GAAATTTCAGCAGCAAAGTTGTTATTCAGTGGGCACGATGGACTCCAAATGCCTCAAGTTATGTATACCTGTCCCAGATG
 481 TAAACTTCATTGTCCTTTGTTGGATGATATTTTAAATGGATATAAAATAAATTGGTCTAAAGGGCTGCCCTCCTTGTTGT
 561 GTTTTTAAATTTTAGTTAAAAACTGCTACAGCTTATGACTTTGTACTTTAAGATAATTGTATTGATCTTTTTTCAGATTC
 641 CTTGTATTTTTTAATAAAGTAATCTTAAATAAAACTCAGATAGGTTAAGTGTTAGAAATTTTAAACAGCTTACATTGTTA
 721 GCGTAAAGTTATCTTTTCTTTTTTCCTAATCAGAGTTCTTGACCCTTTGGTTATTGAGTTTAAAACTTCAATTGAAATTC
 801 AATAGTATTTATTTTTGAAAAAAATCACTAAACTGTGCCTAAAGAACATAACTGCCATATTAATGTTTTGGTTTATATCC
 881 TCTATAGTAATAGAAAAACATTTAATACTTGTAATGCTGATGTGTTAATTTGATACCAGTTGAGTAGAATGTGATCAATC
 961 CAGTTTACAATCTATCATGAGTATTATTAACTAAAATCTATGTGCTTTTCAATAGGAATCATTCTTCTCTTGCTGTAACA
1041 CTTGACCTTAACTTTTAGAAAGTGTTCATTTTTAAACTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGA
1121 ACTGTAATCTGAAGCAGATTATTTAAAGTGTAGAAAAAGAAACAAGTTCTTCTTTTTTGCAAAGGTCTGTGATACCATAT
1201 TTCAGCTTTGTGTAAGTAATTTGAATATCCAAAGGGTTGTGATGATCAGTTCTGAATATGCAACTGTCCACTTAATAAGG
1281 ACAAGTATTCCAGTATCTCTTATGACTGTAGTCATAAATGATGTTGGAATGTACATTTTGTGAAATAGTTGGTATCCCTT
1361 TACTATGATTAATTTTTGTTATTCCAGGAAATACTTGTGAAGCCAGCCAATTAATAAAGCACTTTAGCATCTGTTCAGGT
1441 AGTTTTGAAAACCCACTTTTCCCCTTCAGGATAAGAACTTCCAGGTTACCTAAAAATGCAATAAAAATCTTTATAGTCTA
1521 AGCTTCTTGGCATATAATTTTTCATCAGGGTTTTCTTTTATTAATTGAGCACAATACTGTTTTGATTTAATTTTTTTCCC
1601 TCAAACCACCCAGCTCCTTACATAGTTTTTAATTATATAGCTATATGAAAGAGGTGGCTAAGACATTTGCTGCACACACT
1681 TGAACTAATGTTGGGTCAGTAGCTTCGTGTTACTGCCCTGATCCCAGTGTAATTCAGGTGGAAAGGTATTTTTATCTCAC
1761 AGGGATATGTAGCTATGTATTTTACTAATTGTGAAACACTGGAAATTAATGATGCAGACAACTTGGTGTGGTCTTTGAAC
1841 AGCTCTCTGCAGTATTTTTTTTTTTCCTGTTACCATAAATTGTATTTAAGTGCTTGCTTTCCACTTAAGTTGTACTAATA
1921 GAACCGGTAACTCCCAGCCCTCCCTGTTTGACACTCCTTAGCTTAGATTGATGTAGTTGTTTTTGTTATCCCTATAATGT
2001 GACTTTTATTTTTAAGTCATTGTGTACTGCATTTGTTTGTCACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCT
2081 TATCTGCCATCTCTGTTTTGCCTGATTTCTCTTCAACTGAATAATGGCTTTTTGCATGGAAAAAATAGTTTTTACTATTA
2161 GACGTGTAAAGGGAAGAGAGAGCTAATGTATTGGACTTTGTGAGCCTACAAGGAATATTTTGGATCCCTCCAATAAATAA
2241 GGGCTATGTACTATATGTACTATATAGAGTTATCATGTGGTGGAAGATACTTGCAAGTCATAGATTTATGGGCAGGAGGA
2321 TTTGTTACTCCCTATATCTAGGCTGAATGTAAAATCCCTTATGTTGTATCAATGGGGGTAAAAACTATTTTTATTTGCCT
2401 ATGATATACTTGGTTTCTAATAAAGTGCCCTAGGCTCTAGTGAGAACTGTCTACTTTGAATTGCCATTTACTCCCTTTCC
2481 TCCTTTGGCCGATATGCTCTTGGCTAGCTTTTTATAAGTTAATGTGTTTCCCCAAAAAGTTTCACTACTTTATATTCATT
2561 TGAGTGTGATCCTAAAACACCTGGATCAACAGTACATCTCATATGCAATCTGCATCAGCTCCTATTCTGTCTGGATGTCT
2641 AGAACTGTTGGAAGATTTTGACGTCTTAAGCCCTAGGTTTTGCTTTGGGAAATAAGGTTTGAAATATTGTTCATTGCATT
2721 AAGATTTGTGTGTGTGTGCTTTGTAAGCCCAGAACCAGGTTTTGGAAAATGCCTGTACTGTGAAAGCAAATTAGGACTCT
2801 TTCTGAGCCTCTTTCATTGTCAGAAATAGAATCACTTTCCATCAGCTTCCAGGAAATTGTGTATCTGGAGTCGAAGAGAT
2881 TTGACATCAAGAATCCAGATTTTTAAATGTAATTGTTTTTTAAATGCTAATGTTTGTAAAGCACCTTCAGTTCTTCGGAT
2961 GAAAGGTGCTATATTCCCTCAGTGTAAATTAATAAAAAGATTACAGGAAGTTTGTCAAAAAATTCAATGCATAGTCTGTA
3041 GTATGTCCTGACAAGAAGTTAGCATTTTATATAAGAAATTAAAAAATGCTTATTCCTCCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auUUCAUUG--AAG---G-UGAACCGa 5'
            || |||:  | |   | ||||||: 
Target 5' gaAATTAATGATGCAGACAACTTGGTg 3'
1802 - 1828 129.00 -7.00
2
miRNA  3' auuucAUUGAAGGUGAACCGa 5'
               ||   | :||||||: 
Target 5' ttgccTATGATATACTTGGTt 3'
2395 - 2415 128.00 -9.90
3
miRNA  3' auuUCA---UUGAAGGUGAACCGa 5'
             |||   |:|||   |||||| 
Target 5' tatAGTCTAAGCTT---CTTGGCa 3'
1512 - 1532 126.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19691964 8 COSMIC
COSN30117545 33 COSMIC
COSN26990223 37 COSMIC
COSN30500825 59 COSMIC
COSN7556489 70 COSMIC
COSN30146044 87 COSMIC
COSN30124193 89 COSMIC
COSN20121313 120 COSMIC
COSN30170971 152 COSMIC
COSN28486626 172 COSMIC
COSN19662107 312 COSMIC
COSN32063340 616 COSMIC
COSN20106603 647 COSMIC
COSN9277597 791 COSMIC
COSN20106598 1167 COSMIC
COSN20765008 1254 COSMIC
COSN30145977 1584 COSMIC
COSN30503614 1590 COSMIC
COSN26990224 1591 COSMIC
COSN7556488 1647 COSMIC
COSN15588046 1697 COSMIC
COSN15661421 1851 COSMIC
COSN20106588 1855 COSMIC
COSN15663162 1866 COSMIC
COSN21450051 2833 COSMIC
COSN2310513 2862 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs147263024 1 dbSNP
rs1447513890 2 dbSNP
rs781348145 3 dbSNP
rs757269769 4 dbSNP
rs190146201 5 dbSNP
rs533127204 7 dbSNP
rs1234775494 8 dbSNP
rs1353140205 12 dbSNP
rs752440685 17 dbSNP
rs764782144 19 dbSNP
rs1207218466 22 dbSNP
rs367965390 23 dbSNP
rs1481780067 24 dbSNP
rs1347309215 31 dbSNP
rs762907343 32 dbSNP
rs753349665 36 dbSNP
rs1395380176 37 dbSNP
rs775809686 38 dbSNP
rs762330462 39 dbSNP
rs774681081 41 dbSNP
rs1181077929 45 dbSNP
rs769106660 46 dbSNP
rs1243628320 47 dbSNP
rs1206788147 49 dbSNP
rs200925753 50 dbSNP
rs113746132 57 dbSNP
rs957989550 63 dbSNP
rs1388306400 65 dbSNP
rs760217451 67 dbSNP
rs764407596 68 dbSNP
rs1313560215 70 dbSNP
rs761037227 72 dbSNP
rs908142194 73 dbSNP
rs527353206 77 dbSNP
rs1209560022 102 dbSNP
rs571381160 108 dbSNP
rs982386309 112 dbSNP
rs1466457125 113 dbSNP
rs1282444239 117 dbSNP
rs201970714 118 dbSNP
rs1216758260 123 dbSNP
rs185115771 130 dbSNP
rs368232084 131 dbSNP
rs531310652 131 dbSNP
rs541313197 131 dbSNP
rs1236608652 132 dbSNP
rs1357143740 133 dbSNP
rs1486066371 135 dbSNP
rs1024840057 136 dbSNP
rs1388169394 138 dbSNP
rs1285871818 141 dbSNP
rs1243776231 143 dbSNP
rs1013478562 151 dbSNP
rs1174283947 165 dbSNP
rs757507699 169 dbSNP
rs992579665 183 dbSNP
rs958732833 188 dbSNP
rs1381735945 192 dbSNP
rs1034182460 196 dbSNP
rs1000436635 197 dbSNP
rs374674316 202 dbSNP
rs554151776 202 dbSNP
rs1442258594 205 dbSNP
rs1306328141 212 dbSNP
rs1288981052 222 dbSNP
rs1437038778 224 dbSNP
rs1343032066 225 dbSNP
rs1020226267 229 dbSNP
rs1010216846 235 dbSNP
rs1405383344 239 dbSNP
rs1245982869 249 dbSNP
rs890442198 253 dbSNP
rs775869951 258 dbSNP
rs1464311646 267 dbSNP
rs1194151267 268 dbSNP
rs1415402148 269 dbSNP
rs1166011218 287 dbSNP
rs1254884917 289 dbSNP
rs544082783 290 dbSNP
rs530334806 302 dbSNP
rs1408939003 308 dbSNP
rs1006228075 314 dbSNP
rs1157279999 318 dbSNP
rs1388328520 321 dbSNP
rs1462359041 324 dbSNP
rs766005391 329 dbSNP
rs1273762825 330 dbSNP
rs1373544787 331 dbSNP
rs1229824137 341 dbSNP
rs1265895935 348 dbSNP
rs1189554223 349 dbSNP
rs1476609736 350 dbSNP
rs867981924 351 dbSNP
rs1291865247 352 dbSNP
rs1220870835 359 dbSNP
rs777570457 359 dbSNP
rs1233505018 362 dbSNP
rs1050466418 364 dbSNP
rs996239779 370 dbSNP
rs1475708958 373 dbSNP
rs908114013 378 dbSNP
rs1389150405 385 dbSNP
rs1405312248 411 dbSNP
rs528027875 429 dbSNP
rs1040533225 434 dbSNP
rs1354579638 435 dbSNP
rs946268802 436 dbSNP
rs1349509716 437 dbSNP
rs1233633792 439 dbSNP
rs1285756734 442 dbSNP
rs1354057774 442 dbSNP
rs913488478 448 dbSNP
rs949668286 455 dbSNP
rs1273712974 458 dbSNP
rs1052498453 461 dbSNP
rs936345229 463 dbSNP
rs924982135 469 dbSNP
rs1486137275 470 dbSNP
rs541245878 470 dbSNP
rs916912185 485 dbSNP
rs572341664 495 dbSNP
rs767430739 507 dbSNP
rs1472696265 514 dbSNP
rs969137632 522 dbSNP
rs1422342697 537 dbSNP
rs1431042806 539 dbSNP
rs1305644190 541 dbSNP
rs1369504819 548 dbSNP
rs992940933 549 dbSNP
rs1230260806 572 dbSNP
rs958440475 578 dbSNP
rs1034520262 582 dbSNP
rs1270640972 588 dbSNP
rs917730748 596 dbSNP
rs992005983 597 dbSNP
rs1269213790 599 dbSNP
rs1226219448 606 dbSNP
rs1436836140 613 dbSNP
rs1348748085 619 dbSNP
rs1202360477 621 dbSNP
rs962234660 623 dbSNP
rs978561973 626 dbSNP
rs968556797 627 dbSNP
rs1020153166 632 dbSNP
rs375592694 633 dbSNP
rs1423474492 634 dbSNP
rs1168566663 648 dbSNP
rs147332108 653 dbSNP
rs193098146 654 dbSNP
rs1173957642 659 dbSNP
rs148917246 661 dbSNP
rs1395175657 663 dbSNP
rs1318766111 665 dbSNP
rs1367206595 668 dbSNP
rs765137880 674 dbSNP
rs1296832949 675 dbSNP
rs996589173 676 dbSNP
rs1216610757 678 dbSNP
rs900556928 683 dbSNP
rs1344584836 684 dbSNP
rs1186120007 692 dbSNP
rs1028979420 719 dbSNP
rs556294784 722 dbSNP
rs901954648 723 dbSNP
rs775527123 727 dbSNP
rs1200381541 728 dbSNP
rs1375534505 728 dbSNP
rs886598984 736 dbSNP
rs1159503024 739 dbSNP
rs1275198742 743 dbSNP
rs1047919106 745 dbSNP
rs536501705 745 dbSNP
rs1455502416 746 dbSNP
rs891995121 750 dbSNP
rs1319792372 754 dbSNP
rs1054713037 755 dbSNP
rs1206612176 760 dbSNP
rs1388523958 774 dbSNP
rs1299320114 780 dbSNP
rs1305546776 786 dbSNP
rs918163390 789 dbSNP
rs868607869 791 dbSNP
rs73579970 793 dbSNP
rs1327511883 797 dbSNP
rs1208515387 802 dbSNP
rs1044768686 808 dbSNP
rs4838250 817 dbSNP
rs533960148 818 dbSNP
rs1281007670 825 dbSNP
rs1264622868 830 dbSNP
rs1432129613 833 dbSNP
rs571493893 839 dbSNP
rs1182442660 841 dbSNP
rs927038468 857 dbSNP
rs1403717340 859 dbSNP
rs992351272 859 dbSNP
rs764465492 862 dbSNP
rs907723996 875 dbSNP
rs984718058 881 dbSNP
rs913067340 884 dbSNP
rs1390103069 892 dbSNP
rs1410578917 896 dbSNP
rs1290387237 897 dbSNP
rs951972062 898 dbSNP
rs1348870622 904 dbSNP
rs1228128475 910 dbSNP
rs1353102617 919 dbSNP
rs4838249 921 dbSNP
rs954617659 924 dbSNP
rs1431636646 927 dbSNP
rs1030676943 930 dbSNP
rs1487864161 931 dbSNP
rs1205268124 935 dbSNP
rs1174564533 939 dbSNP
rs1253440151 944 dbSNP
rs1481886227 950 dbSNP
rs1181127675 958 dbSNP
rs1414213535 963 dbSNP
rs1425407753 968 dbSNP
rs531474056 969 dbSNP
rs568793366 974 dbSNP
rs996169973 984 dbSNP
rs1367835662 986 dbSNP
rs1430415508 989 dbSNP
rs965055198 990 dbSNP
rs548702967 1005 dbSNP
rs1479645469 1012 dbSNP
rs966070614 1013 dbSNP
rs1409420940 1017 dbSNP
rs1303680240 1021 dbSNP
rs1381786447 1022 dbSNP
rs1006256646 1024 dbSNP
rs754505944 1029 dbSNP
rs1019013854 1032 dbSNP
rs1343502920 1042 dbSNP
rs1228440089 1045 dbSNP
rs1232255730 1048 dbSNP
rs1210507296 1049 dbSNP
rs1339515728 1051 dbSNP
rs1010758231 1054 dbSNP
rs1203996002 1056 dbSNP
rs891958348 1058 dbSNP
rs530388468 1059 dbSNP
rs1179907145 1104 dbSNP
rs1325425254 1106 dbSNP
rs1260796410 1108 dbSNP
rs776030433 1121 dbSNP
rs1222583128 1124 dbSNP
rs1388363436 1129 dbSNP
rs1013713458 1162 dbSNP
rs1033626980 1164 dbSNP
rs201627925 1169 dbSNP
rs1302664465 1170 dbSNP
rs1366494244 1170 dbSNP
rs1446185460 1170 dbSNP
rs1437872706 1172 dbSNP
rs142322437 1175 dbSNP
rs367580942 1175 dbSNP
rs34039450 1179 dbSNP
rs1362385509 1187 dbSNP
rs1213493330 1189 dbSNP
rs1278807209 1195 dbSNP
rs1313622121 1196 dbSNP
rs938298581 1197 dbSNP
rs1000416380 1203 dbSNP
rs1389206136 1209 dbSNP
rs576722847 1210 dbSNP
rs947081898 1215 dbSNP
rs779758107 1216 dbSNP
rs1191849184 1223 dbSNP
rs188937655 1228 dbSNP
rs745435539 1229 dbSNP
rs562226862 1230 dbSNP
rs988614956 1232 dbSNP
rs1408836009 1234 dbSNP
rs1175682136 1235 dbSNP
rs1363586677 1236 dbSNP
rs1334966029 1239 dbSNP
rs1469517161 1240 dbSNP
rs896178055 1245 dbSNP
rs1319062704 1248 dbSNP
rs1388556882 1261 dbSNP
rs1412767503 1263 dbSNP
rs1274953962 1266 dbSNP
rs1161317128 1270 dbSNP
rs1417437176 1271 dbSNP
rs1407071620 1290 dbSNP
rs1056214472 1292 dbSNP
rs940470108 1303 dbSNP
rs907666400 1308 dbSNP
rs1266093347 1316 dbSNP
rs975053766 1335 dbSNP
rs985033011 1340 dbSNP
rs1241087133 1349 dbSNP
rs930538326 1356 dbSNP
rs547715691 1358 dbSNP
rs182340144 1366 dbSNP
rs1202620904 1372 dbSNP
rs1412992502 1381 dbSNP
rs565180918 1386 dbSNP
rs1157445789 1391 dbSNP
rs1388488949 1393 dbSNP
rs1006178160 1394 dbSNP
rs1465033301 1397 dbSNP
rs1351107774 1407 dbSNP
rs1165551484 1409 dbSNP
rs1433755190 1415 dbSNP
rs1302082780 1419 dbSNP
rs760396686 1422 dbSNP
rs921864705 1422 dbSNP
rs1286253157 1425 dbSNP
rs1349751420 1432 dbSNP
rs146787265 1436 dbSNP
rs1236171480 1439 dbSNP
rs974659262 1441 dbSNP
rs1026369133 1445 dbSNP
rs1048251 1454 dbSNP
rs1019401299 1455 dbSNP
rs1252758819 1463 dbSNP
rs1313435775 1481 dbSNP
rs1484170864 1483 dbSNP
rs988901726 1489 dbSNP
rs1180348967 1493 dbSNP
rs562874404 1501 dbSNP
rs542673016 1504 dbSNP
rs534057389 1507 dbSNP
rs1165499046 1511 dbSNP
rs1412285172 1513 dbSNP
rs1452397103 1521 dbSNP
rs1403034240 1528 dbSNP
rs956324982 1534 dbSNP
rs574013428 1538 dbSNP
rs757334755 1542 dbSNP
rs10986583 1548 dbSNP
rs1370739775 1550 dbSNP
rs1411254476 1557 dbSNP
rs764589279 1558 dbSNP
rs1334944163 1567 dbSNP
rs1002860766 1569 dbSNP
rs554086842 1574 dbSNP
rs904108423 1589 dbSNP
rs753673159 1590 dbSNP
rs1165388005 1598 dbSNP
rs1344456333 1598 dbSNP
rs1203274247 1600 dbSNP
rs1250145060 1608 dbSNP
rs970243918 1613 dbSNP
rs1446425121 1614 dbSNP
rs947050807 1615 dbSNP
rs1383333779 1616 dbSNP
rs534128231 1623 dbSNP
rs1014555231 1626 dbSNP
rs933114481 1634 dbSNP
rs923092823 1635 dbSNP
rs974644989 1638 dbSNP
rs577902481 1643 dbSNP
rs896145823 1644 dbSNP
rs1549314 1645 dbSNP
rs909138761 1653 dbSNP
rs1338532616 1656 dbSNP
rs1451784354 1657 dbSNP
rs554916546 1665 dbSNP
rs1367421281 1669 dbSNP
rs1226299110 1670 dbSNP
rs886206110 1672 dbSNP
rs950736738 1676 dbSNP
rs1048857956 1678 dbSNP
rs1265561497 1681 dbSNP
rs771282786 1687 dbSNP
rs992638093 1698 dbSNP
rs1461178081 1699 dbSNP
rs930464714 1703 dbSNP
rs1189771480 1706 dbSNP
rs752820682 1716 dbSNP
rs34071040 1719 dbSNP
rs960855744 1721 dbSNP
rs1038923546 1723 dbSNP
rs944657653 1724 dbSNP
rs1190436719 1733 dbSNP
rs1372092011 1737 dbSNP
rs1478137707 1746 dbSNP
rs1313592245 1752 dbSNP
rs1034260116 1753 dbSNP
rs1403625068 1757 dbSNP
rs1469150637 1759 dbSNP
rs1321071895 1765 dbSNP
rs1390759226 1767 dbSNP
rs1327399257 1769 dbSNP
rs1297974219 1775 dbSNP
rs767801980 1779 dbSNP
rs1361336671 1795 dbSNP
rs1002384945 1797 dbSNP
rs1303788949 1799 dbSNP
rs1426662970 1805 dbSNP
rs904077261 1817 dbSNP
rs1323260447 1844 dbSNP
rs1209763990 1845 dbSNP
rs1270532799 1847 dbSNP
rs79203881 1854 dbSNP
rs200370050 1855 dbSNP
rs78023985 1855 dbSNP
rs1463952561 1856 dbSNP
rs989239331 1861 dbSNP
rs1205108947 1866 dbSNP
rs1451740946 1866 dbSNP
rs5900644 1866 dbSNP
rs1200529919 1869 dbSNP
rs1426781747 1882 dbSNP
rs568879801 1884 dbSNP
rs1162866964 1895 dbSNP
rs926019006 1896 dbSNP
rs1374650600 1899 dbSNP
rs1190542164 1900 dbSNP
rs1427606578 1901 dbSNP
rs1159675645 1903 dbSNP
rs1267637082 1903 dbSNP
rs978866243 1904 dbSNP
rs1022573032 1909 dbSNP
rs1451517089 1914 dbSNP
rs1288258878 1916 dbSNP
rs1200908702 1923 dbSNP
rs1391542595 1924 dbSNP
rs1009847968 1925 dbSNP
rs548926360 1926 dbSNP
rs1301463070 1928 dbSNP
rs747194394 1930 dbSNP
rs1489640761 1934 dbSNP
rs891456440 1936 dbSNP
rs1222471860 1937 dbSNP
rs970212616 1938 dbSNP
rs1229340315 1941 dbSNP
rs537615647 1946 dbSNP
rs933064916 1946 dbSNP
rs1238951392 1947 dbSNP
rs535085570 1949 dbSNP
rs1014481521 1953 dbSNP
rs943227389 1956 dbSNP
rs1266282247 1965 dbSNP
rs751701287 1967 dbSNP
rs1182515959 1968 dbSNP
rs960572045 1969 dbSNP
rs766787741 1975 dbSNP
rs566510978 1979 dbSNP
rs1034667850 1984 dbSNP
rs547677016 1995 dbSNP
rs1158273270 1997 dbSNP
rs1369000968 2002 dbSNP
rs1307099264 2004 dbSNP
rs1459448893 2007 dbSNP
rs909109109 2013 dbSNP
rs1004968946 2016 dbSNP
rs886134753 2017 dbSNP
rs1310157113 2018 dbSNP
rs984653048 2019 dbSNP
rs527990051 2024 dbSNP
rs1324057572 2027 dbSNP
rs994583108 2031 dbSNP
rs143635521 2037 dbSNP
rs1343782799 2039 dbSNP
rs1288936354 2042 dbSNP
rs1358160548 2045 dbSNP
rs1205425515 2046 dbSNP
rs763505641 2053 dbSNP
rs141099408 2054 dbSNP
rs992211387 2060 dbSNP
rs900334855 2061 dbSNP
rs1033782097 2067 dbSNP
rs1398339560 2069 dbSNP
rs1181719875 2088 dbSNP
rs1199084012 2094 dbSNP
rs981326228 2101 dbSNP
rs968191023 2109 dbSNP
rs770328053 2115 dbSNP
rs1038848383 2117 dbSNP
rs944618917 2118 dbSNP
rs1009816163 2120 dbSNP
rs1381864922 2121 dbSNP
rs911813242 2122 dbSNP
rs1315050821 2124 dbSNP
rs1461320712 2129 dbSNP
rs1053073414 2131 dbSNP
rs1031716578 2134 dbSNP
rs1228518551 2136 dbSNP
rs1274595913 2146 dbSNP
rs773718594 2156 dbSNP
rs934640911 2163 dbSNP
rs531796876 2164 dbSNP
rs1201673031 2171 dbSNP
rs146525360 2186 dbSNP
rs1038798805 2192 dbSNP
rs1007285414 2194 dbSNP
rs1267634381 2196 dbSNP
rs978833696 2197 dbSNP
rs1417570768 2199 dbSNP
rs1428124211 2208 dbSNP
rs543134898 2212 dbSNP
rs1199286851 2214 dbSNP
rs573948368 2225 dbSNP
rs762191058 2227 dbSNP
rs1438946794 2228 dbSNP
rs1177112891 2231 dbSNP
rs1361257108 2235 dbSNP
rs916042884 2237 dbSNP
rs1048915972 2239 dbSNP
rs1490010902 2243 dbSNP
rs993014043 2246 dbSNP
rs560510457 2248 dbSNP
rs1339158486 2253 dbSNP
rs929221634 2256 dbSNP
rs1271408216 2259 dbSNP
rs3841411 2266 dbSNP
rs1056838993 2277 dbSNP
rs1271604460 2277 dbSNP
rs1224094363 2284 dbSNP
rs1301612018 2289 dbSNP
rs1356424405 2294 dbSNP
rs1321462636 2297 dbSNP
rs1221466507 2312 dbSNP
rs1282783620 2320 dbSNP
rs2535 2330 dbSNP
rs1210573485 2332 dbSNP
rs980867232 2334 dbSNP
rs1485623776 2336 dbSNP
rs1191983014 2338 dbSNP
rs968159997 2341 dbSNP
rs771801472 2345 dbSNP
rs983077323 2359 dbSNP
rs988312336 2366 dbSNP
rs956910643 2372 dbSNP
rs950430178 2378 dbSNP
rs997565757 2379 dbSNP
rs1338285420 2387 dbSNP
rs745369778 2387 dbSNP
rs1293682116 2389 dbSNP
rs1429428335 2389 dbSNP
rs965720681 2418 dbSNP
rs1027308648 2420 dbSNP
rs1017714932 2429 dbSNP
rs1282369153 2430 dbSNP
rs994510746 2432 dbSNP
rs1427959577 2439 dbSNP
rs1282142118 2440 dbSNP
rs1222410178 2441 dbSNP
rs1007254339 2444 dbSNP
rs577999777 2449 dbSNP
rs13289387 2450 dbSNP
rs1489927682 2457 dbSNP
rs1199021245 2463 dbSNP
rs1158601979 2464 dbSNP
rs900261636 2467 dbSNP
rs1157280978 2468 dbSNP
rs887567129 2469 dbSNP
rs1399568340 2475 dbSNP
rs1048841603 2476 dbSNP
rs1366003402 2476 dbSNP
rs1402689516 2480 dbSNP
rs993305023 2485 dbSNP
rs1350875712 2490 dbSNP
rs1180363745 2491 dbSNP
rs191551822 2495 dbSNP
rs1444132149 2496 dbSNP
rs1017365085 2499 dbSNP
rs1277633136 2505 dbSNP
rs1372563799 2517 dbSNP
rs1228916582 2520 dbSNP
rs1244175887 2522 dbSNP
rs1205785010 2524 dbSNP
rs1357458032 2534 dbSNP
rs897714043 2535 dbSNP
rs1009135934 2539 dbSNP
rs1275636246 2546 dbSNP
rs1439852572 2552 dbSNP
rs186719586 2555 dbSNP
rs1460112648 2557 dbSNP
rs1473398000 2562 dbSNP
rs1186005520 2569 dbSNP
rs1056365846 2570 dbSNP
rs1422278382 2573 dbSNP
rs1162474816 2579 dbSNP
rs1262785105 2580 dbSNP
rs1205720964 2589 dbSNP
rs1352951199 2595 dbSNP
rs1277688196 2600 dbSNP
rs1238321618 2604 dbSNP
rs1383216138 2605 dbSNP
rs1353759875 2607 dbSNP
rs1316957707 2608 dbSNP
rs778543430 2621 dbSNP
rs939294808 2624 dbSNP
rs1380600594 2634 dbSNP
rs1245343044 2638 dbSNP
rs1298552909 2644 dbSNP
rs1341758756 2662 dbSNP
rs117859968 2663 dbSNP
rs1053444202 2668 dbSNP
rs1443423607 2670 dbSNP
rs934630904 2671 dbSNP
rs555170242 2685 dbSNP
rs535580091 2692 dbSNP
rs1241852364 2698 dbSNP
rs904490614 2708 dbSNP
rs1442172804 2712 dbSNP
rs866471793 2717 dbSNP
rs1236396278 2724 dbSNP
rs1182479998 2733 dbSNP
rs182851316 2734 dbSNP
rs915339444 2738 dbSNP
rs988278090 2739 dbSNP
rs1395486272 2740 dbSNP
rs1414835765 2743 dbSNP
rs1338545721 2750 dbSNP
rs1403855334 2757 dbSNP
rs948760504 2765 dbSNP
rs546193143 2770 dbSNP
rs1318555785 2787 dbSNP
rs916010367 2792 dbSNP
rs534194936 2793 dbSNP
rs1225506120 2805 dbSNP
rs374347202 2806 dbSNP
rs368833047 2807 dbSNP
rs1346084483 2808 dbSNP
rs908747873 2813 dbSNP
rs1261775087 2817 dbSNP
rs983429285 2818 dbSNP
rs977017484 2821 dbSNP
rs964679511 2824 dbSNP
rs1261779545 2826 dbSNP
rs952998142 2828 dbSNP
rs551692087 2833 dbSNP
rs190215396 2835 dbSNP
rs1190502603 2836 dbSNP
rs1372150110 2838 dbSNP
rs1017268323 2855 dbSNP
rs1178345288 2856 dbSNP
rs1426996871 2860 dbSNP
rs74944000 2863 dbSNP
rs973058884 2869 dbSNP
rs1237058801 2871 dbSNP
rs1387221868 2872 dbSNP
rs1380620353 2873 dbSNP
rs557532662 2874 dbSNP
rs6744 2883 dbSNP
rs752584212 2886 dbSNP
rs374993925 2918 dbSNP
rs1027379769 2921 dbSNP
rs1323328326 2944 dbSNP
rs1008688476 2956 dbSNP
rs1263029851 2957 dbSNP
rs77279271 2964 dbSNP
rs1202887071 2971 dbSNP
rs560478497 2998 dbSNP
rs1490404164 2999 dbSNP
rs76161131 3000 dbSNP
rs1266500464 3012 dbSNP
rs999139201 3014 dbSNP
rs1159674739 3023 dbSNP
rs1035299833 3025 dbSNP
rs904459404 3026 dbSNP
rs1360003259 3031 dbSNP
rs1043050064 3033 dbSNP
rs948688064 3037 dbSNP
rs1293865430 3059 dbSNP
rs894502996 3063 dbSNP
rs1366327067 3069 dbSNP
rs1426752528 3073 dbSNP
rs1381842776 3081 dbSNP
rs1057461940 3082 dbSNP
rs533227764 3087 dbSNP
rs1003461106 3089 dbSNP
rs755294697 3090 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5537.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5537.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000373547.4 | 3UTR | CAUAUAAUUUUUCAUCAGGGUUUUCUUUUAUUAAUUGAGCACAAUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000373547.4 | 3UTR | CAUAUAAUUUUUCAUCAGGGUUUUCUUUUAUUAAUUGAGCACAAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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