miRTarBase - #MIRT506582


—
pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol MIER3   
Synonyms -
Description MIER family member 3
Transcript NM_152622   
Expression
Putative miRNA Targets on MIER3
3'UTR of MIER3
(miRNA target sites are highlighted)		 
>MIER3|NM_152622|3'UTR
   1 CCTGAGTGAGGATCCCGGAACTGCGTGTGCAGCACCAGTAAACTTGAGGGGAGCTATCAGGTTTGCATAGTCTTTCACTG
  81 GAAGTTTGAACCTTTCTCACTATGACATCAGTGATGTCAGTATGTATAGAACTATATCTTGATTTATCAAGAGTATTTTC
 161 ATTTTTCAATCCATAAATGTGGAAATGAACTATGATCAGCAGAGTTGGGAACTAAGATTGAACTCTGTGGTGCAGCTTTA
 241 AGCTCTGCTTCTCTCTTCCTCATCTCCCAATACCTCTTCCCCACTCCCTTCTTTTTCTATTCTTTTGTGTTCCCCACTGC
 321 CCTCACTCCCAATTTTAAAACCTGTAGACAGAGGCCACCAGCTCAAAACCAGCACAGATGTTCTGAACTGAATGGTGTGG
 401 CCTCTTTTTGTGTAAATTCCTTTTGCCGTAATGGATGCAGTGGAATAACAATGTTTACAGGTACCGATCCCGATCCCTGC
 481 TCAATGTAGCATTTTTTTGGTTTTATTTTCTTAATAAAAGCAGGGGTAGGTTTCTTTAAACTGCACAAACATGCAAGGAT
 561 TTTTTAAAAATGGAAACTTCTCTCATGTTATTCAACTAGAGCACTTCAGTTTACAAAACAGCAAGTCCATCTTTATGGAA
 641 GCCAGCACAAGGAACTGTGTGCAAATAATGAAGACGCTTGCTTGGATCCTGTTTCAAAATTCTAGACCAGGGCTACCTTA
 721 CACAGAATTGGTCATGTTACTGCCAGGAGATTTCTGTGTAACTTCATTTATTGGCTACAGTTTTGGCATTTGAAGATGTG
 801 GTACTCAGATGGGGTTTTGTCCACCATTGTCAAGATTGTAATCTTAAAAATCATACCAGTCATTGATAATTTAGTTTATC
 881 CTGAGGCAGTCGACTTGCAGAGGCACAGTCTACAAAGCCTAGGATGTTGCCACTCAATGGTTTACATTTTGGGACATCTT
 961 TTAAGTTGTTTGTAGCACTGCAGTTCAAAGTGTTAATATTTAGAGGGACTTCTAGATTTTATACCTAATGCAGTAGAACC
1041 TTGAAGTATATTTAAGCTTTTTTGTTAAGCTTGAACAGTTGGCAAGAATAATGTGAGTTCCTATCTGAAATAGAATGGTA
1121 CATTACCACTTTTAAGTTTTAAAAATTGATAGATGTTCAGATGTATCTCAAACTCAGTTTTATTTTTATTCCAAATATTG
1201 TGAATGAGAAGCCATTGTCCTAAACTTTGGCCATTTTTGTGCTATAAACATGCATTTTTAAGTTATAAGGTGAATCAAAC
1281 AATATGTAATACAGTATTAGGATGTAATCTTTGCTTTTGTAGTACTGTTAAAATAGAGAATTATGTTGTTTGCACCGTCT
1361 TAATTAAAATTCTTGATTTTTACTAGTTGCTTTGCAAAAAACAAATGTTTGGCTGCATTGCTAATATTTGTAAGTATAAG
1441 TTGCTTCAAGGTTGTGCTGATGAGTAGATAGGATGTAGTGATCTTAGTAGTGATTGAAAGGGAGGGTATTTATTATACAA
1521 ACTGTGAACTGCAATGACATCCTTAGTTTTGGATGATGTGTATTCTTGTTTTTCTTTGCAGCATTTTAATGAAGATTGCT
1601 TTGAAGTGTTTACGCAGTAGCACATTAGTATAAAATTTAGTTTAGCACAGTGGACAAAAAGTAGTTAAATTAATAACTTA
1681 AAATCAGTCTCTAATTTATACATCTGAAGTATAGCATTCCTGTATGCACACAGTAAATAATGGGTAGCCTGGGCTCTGTG
1761 TTACTTTCTTGTATTTTTATCCAAGTTGTCAGCTTCTTATTGCTGTGTTGTTGTGCTAAACTTTGAACCTTATTTCTTTT
1841 ATTAAAAATCAGTACACTTTCTATAATTTAGTAAGATACTGGCCATAATCTTCCATTGTTATAACCTTAATTTTCACTCT
1921 GGGTTTACAGTGGCTGGTCTGTATAAATAATTTACACAAAGATGACTGAATGCTAATACCAGTTGCACTTAAATGAACAT
2001 GCCCATTCTCAGTAGCTGATGCAGTAATATATTCAGTTTATCTATGCATTGCTGGGGTCTTGATATAAGATGGAAACAGT
2081 GTTTCTTATCTAAAGTTTTGATTATCAGCAAGTTGAATGGACACTTTAGTTATTTAAATAAAGATTTTTGACCAAAATCC
2161 AGAAAATGGTATGAGAGAAAAATAAATTCCAGCTAGTTTAATAGATTTTTAAATGTCAATCTGATTTTAGCCTCTTAGAG
2241 AGTGCTAACTAGCTGGTAATGTTTACTTTTAATTCCTTGTTAAAATGAGGCAATAATTTGCAAGATTTTTGTATATAAGT
2321 GTAAATTCTTCATATCTTTTTAGATCTAATTCAATATTTTCTGACTACTTCTGCCATGTATAATACCATTTTTGTGCATG
2401 CTTGATGTGACATTCATAAATTGTACCACTATGACTTTATCCATGTAAAATAGCTATTTATTGAATTTTCTTTTAAAAGC
2481 TGGATTTACTGGGTTTTTTTTTTCTCTCAGTTTAAACATCTTAACAGAGAATTTGTTACTGTTTATTAAAAGAATTGCAT
2561 TTGGAAGCAAGAAAACAACCGGATTTGCAATCATGTGAAGAAACAATAATGCCTTTATTATCAAGTGTTAAGCACAATTC
2641 TTATAACAAACTGTGATAAATTCTTTTTGTTTTTTTTTCCTTTGCCCCATTATTTTCTTATGAACAAACCAAAAATTCAT
2721 GGTGAGCAGTTGCAGTGTTGGCTGATATATCTTTTATGTACAGGGAATTTGAAAAGGACAGTGGATTCATTTAGAAGTGT
2801 AACTGGTGCTGTGATTATAGCAATACATTTGTTAGTTGTACTTCATCTTTTTCATGCTAGCTTTTTAAATGTTTAGTTTT
2881 CCTCTTGTCATGGTCAGCTGCTGAATTTACTTGAAGGATGTAGAATACTGTTTAAAAAATACTAAAATTTGTACAATTAG
2961 ATCAAAGAATTGTGCAATCATTTCCTTTTTAATTTTTAAAATGTTGAGGCTCATAAATATTTGAGAACATCAGATCTAAT
3041 AGAGCATAGTGATACTATTTAATTTAACCAAAGTCTCTAGTGAATATTTCAACTTTGAATGTAAACTAACAAATAAACCT
3121 GACCACCAAGGAGATTGTTTGCCCAGAGTTTCAAAGCACATTGTCTACAAATGGAAATTGAAATAATTTATAAAATATTG
3201 ACGTTACTATGTTTTTTAAAAAGTTCCTAATTTTTTCACTAAATGGAGGAAACTATTAGTTTTATTGTTAAATATGGTAG
3281 ATATTAATATTCCTCTTAGATGACCAGTGATTCCAATTGTCCCAGTTTGAAATAAGTACCCTGTGAGTATGAGATAAATT
3361 AGTGACAATCAGAACAAGTTTCAGTATCAGATGTTCAAGAGGAAGTTGCTATTGCATTGATTTTAATATTTGTACATAAA
3441 CACTGATTTTTTTGAGCATTATTTTGTATTTGTTGTACTTTAATACCTGGTGTACAGTTCCAGAAATAAAAATCTGGGAA
3521 TCTTTTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' accACG-UUUUCAUU-----AACACCAAAAa 5'
             |||  || |||:     || ||||||| 
Target 5' cccTGCTCAATGTAGCATTTTTTTGGTTTTa 3'
 475 - 505 158.00 -6.40
2 
miRNA  3' acCACGUUUUCAU-------UAAC---ACCAAAAa 5'
            || |||:|| |       ||||   || |||| 
Target 5' atGTTCAAGAGGAAGTTGCTATTGCATTGATTTTa 3'
 3391 - 3425 131.00 -6.05
3 
miRNA  3' accACGUUUUCA-UUAACACCAAAAa 5'
             ||::: | | |: || |||||| 
Target 5' agaTGTGGTACTCAGATGGGGTTTTg 3'
 794 - 819 130.00 -8.56
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30173373 4 COSMIC
COSN26481522 10 COSMIC
COSN30140728 17 COSMIC
COSN31483190 46 COSMIC
COSN31561050 70 COSMIC
COSN30165702 146 COSMIC
COSN31577670 149 COSMIC
COSN26599925 214 COSMIC
COSN30543639 319 COSMIC
COSN30542574 354 COSMIC
COSN26638078 449 COSMIC
COSN31517614 534 COSMIC
COSN25211838 565 COSMIC
COSN31606534 567 COSMIC
COSN31483115 685 COSMIC
COSN31778449 851 COSMIC
COSN26648474 930 COSMIC
COSN28718083 1158 COSMIC
COSN31609170 1186 COSMIC
COSN31608906 1242 COSMIC
COSN31534121 1306 COSMIC
COSN31515266 1338 COSMIC
COSN26547941 1399 COSMIC
COSN8492916 1542 COSMIC
COSN9452357 1549 COSMIC
COSN31609741 1565 COSMIC
COSN26601771 1581 COSMIC
COSN25464050 1806 COSMIC
COSN31548655 1839 COSMIC
COSN31520969 1849 COSMIC
COSN26638077 2002 COSMIC
COSN31606535 2115 COSMIC
COSN31582622 2187 COSMIC
COSN24582220 2216 COSMIC
COSN31579443 2290 COSMIC
COSN8632409 2319 COSMIC
COSN32063671 2454 COSMIC
COSN28928807 2493 COSMIC
COSN30542641 2529 COSMIC
COSN28717905 2622 COSMIC
COSN31591278 2628 COSMIC
COSN31531513 2669 COSMIC
COSN31572426 2679 COSMIC
COSN28725992 2748 COSMIC
COSN31610773 2927 COSMIC
COSN30175074 2967 COSMIC
COSN31546644 2996 COSMIC
COSN28718746 3023 COSMIC
COSN26600237 3141 COSMIC
COSN28718473 3180 COSMIC
COSN28162839 3237 COSMIC
COSN7947687 3244 COSMIC
COSN30540905 3424 COSMIC
COSN31557608 3522 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752251400 2 dbSNP
rs764747917 6 dbSNP
rs1186852210 13 dbSNP
rs772259529 15 dbSNP
rs373549503 16 dbSNP
rs200243272 17 dbSNP
rs1339096334 18 dbSNP
rs1164476209 22 dbSNP
rs1470528384 22 dbSNP
rs534413816 24 dbSNP
rs541475962 25 dbSNP
rs900292759 27 dbSNP
rs774889097 50 dbSNP
rs779726499 50 dbSNP
rs1366879199 52 dbSNP
rs1412444468 56 dbSNP
rs551932633 71 dbSNP
rs1311731155 73 dbSNP
rs1319778437 75 dbSNP
rs930746475 78 dbSNP
rs1186891268 79 dbSNP
rs1484684198 81 dbSNP
rs1273756492 87 dbSNP
rs1464463438 88 dbSNP
rs1206933238 96 dbSNP
rs1259525853 97 dbSNP
rs899318506 106 dbSNP
rs1486302657 109 dbSNP
rs1181554844 115 dbSNP
rs1254503616 123 dbSNP
rs1039211597 129 dbSNP
rs1166034623 132 dbSNP
rs1411915516 132 dbSNP
rs748179415 150 dbSNP
rs1156290603 154 dbSNP
rs1282187502 162 dbSNP
rs943619660 171 dbSNP
rs912112646 172 dbSNP
rs533487516 180 dbSNP
rs569533394 195 dbSNP
rs1376629180 198 dbSNP
rs1397591173 217 dbSNP
rs933635599 218 dbSNP
rs1293784914 247 dbSNP
rs1328346041 254 dbSNP
rs1226545832 255 dbSNP
rs912912707 257 dbSNP
rs989682915 261 dbSNP
rs1231835262 266 dbSNP
rs988568076 268 dbSNP
rs1285278815 270 dbSNP
rs926721089 271 dbSNP
rs938065091 271 dbSNP
rs982213804 277 dbSNP
rs1471890053 286 dbSNP
rs1185060639 291 dbSNP
rs970690407 294 dbSNP
rs774353674 299 dbSNP
rs550603957 302 dbSNP
rs148014477 309 dbSNP
rs1315523233 315 dbSNP
rs1174862545 325 dbSNP
rs1015605110 327 dbSNP
rs983732715 330 dbSNP
rs950700626 331 dbSNP
rs957384542 332 dbSNP
rs1339929207 338 dbSNP
rs1032844838 341 dbSNP
rs994656439 345 dbSNP
rs979894086 356 dbSNP
rs561850246 363 dbSNP
rs1388903521 366 dbSNP
rs1374075551 377 dbSNP
rs1218742908 385 dbSNP
rs969885244 396 dbSNP
rs1164038800 398 dbSNP
rs863838 404 dbSNP
rs1420001741 405 dbSNP
rs1014196823 408 dbSNP
rs574212172 410 dbSNP
rs1182402980 426 dbSNP
rs1233992573 427 dbSNP
rs527497108 428 dbSNP
rs1190086854 450 dbSNP
rs1422501218 456 dbSNP
rs1455293264 464 dbSNP
rs1008613716 465 dbSNP
rs886421212 466 dbSNP
rs1026762855 472 dbSNP
rs994923555 473 dbSNP
rs1369904295 486 dbSNP
rs899284666 496 dbSNP
rs1272742455 499 dbSNP
rs555903580 516 dbSNP
rs1337431568 517 dbSNP
rs749622190 521 dbSNP
rs1290986536 523 dbSNP
rs1231108646 538 dbSNP
rs926793175 541 dbSNP
rs1214500875 542 dbSNP
rs1451519804 546 dbSNP
rs1360424961 559 dbSNP
rs1046485021 566 dbSNP
rs1267960275 572 dbSNP
rs1193815638 577 dbSNP
rs1389192530 578 dbSNP
rs1436640768 580 dbSNP
rs949497425 589 dbSNP
rs780446464 590 dbSNP
rs1169408457 592 dbSNP
rs1420034900 592 dbSNP
rs1404690170 593 dbSNP
rs1321510330 594 dbSNP
rs1365525734 603 dbSNP
rs1441759657 605 dbSNP
rs908533610 607 dbSNP
rs982835208 608 dbSNP
rs1437613905 614 dbSNP
rs144432702 616 dbSNP
rs1356175415 620 dbSNP
rs950676946 622 dbSNP
rs1459506995 623 dbSNP
rs890642993 628 dbSNP
rs920535768 629 dbSNP
rs1213807283 631 dbSNP
rs1246925051 634 dbSNP
rs1463258545 647 dbSNP
rs1194966741 648 dbSNP
rs973311820 649 dbSNP
rs545184862 650 dbSNP
rs1017397944 651 dbSNP
rs945648154 659 dbSNP
rs1158485566 662 dbSNP
rs543990409 662 dbSNP
rs1386625606 671 dbSNP
rs576995508 672 dbSNP
rs1319236719 675 dbSNP
rs577899137 675 dbSNP
rs556455118 676 dbSNP
rs1021026796 706 dbSNP
rs1009259779 718 dbSNP
rs544228800 720 dbSNP
rs925661862 722 dbSNP
rs979859694 724 dbSNP
rs893483759 746 dbSNP
rs1326464253 748 dbSNP
rs1284544907 749 dbSNP
rs774480491 750 dbSNP
rs1252400262 754 dbSNP
rs1192018167 756 dbSNP
rs1185098432 758 dbSNP
rs1259407997 762 dbSNP
rs1475489507 765 dbSNP
rs1469936498 777 dbSNP
rs1409767992 786 dbSNP
rs573649994 788 dbSNP
rs555514851 790 dbSNP
rs1159316844 803 dbSNP
rs560147377 804 dbSNP
rs905323382 810 dbSNP
rs1204254795 811 dbSNP
rs1376515488 825 dbSNP
rs533681881 831 dbSNP
rs1287016482 836 dbSNP
rs992730641 837 dbSNP
rs566537453 838 dbSNP
rs11951254 855 dbSNP
rs1240597757 862 dbSNP
rs1026310697 866 dbSNP
rs1230039811 868 dbSNP
rs1198427448 871 dbSNP
rs1282199288 873 dbSNP
rs1485881292 876 dbSNP
rs1204285314 886 dbSNP
rs1249560807 890 dbSNP
rs1420918414 891 dbSNP
rs1182582104 892 dbSNP
rs1047485709 898 dbSNP
rs1302018663 912 dbSNP
rs776614626 919 dbSNP
rs702681 926 dbSNP
rs1376383324 930 dbSNP
rs1429533957 937 dbSNP
rs919940776 959 dbSNP
rs181401896 962 dbSNP
rs868352118 963 dbSNP
rs746783893 971 dbSNP
rs1017621707 979 dbSNP
rs910378160 980 dbSNP
rs1441167279 990 dbSNP
rs987351645 991 dbSNP
rs1007622631 1007 dbSNP
rs1305197467 1016 dbSNP
rs890611326 1016 dbSNP
rs1170437959 1024 dbSNP
rs1249446958 1031 dbSNP
rs1051917878 1036 dbSNP
rs1009822145 1046 dbSNP
rs533885142 1049 dbSNP
rs1054051965 1064 dbSNP
rs1171777957 1070 dbSNP
rs550816708 1086 dbSNP
rs529272020 1091 dbSNP
rs925626624 1092 dbSNP
rs1395952524 1093 dbSNP
rs1449133427 1095 dbSNP
rs1177030946 1096 dbSNP
rs1009746321 1103 dbSNP
rs1479850138 1106 dbSNP
rs1044147948 1111 dbSNP
rs189453263 1113 dbSNP
rs1206546848 1115 dbSNP
rs750064281 1116 dbSNP
rs1327458981 1118 dbSNP
rs575632782 1119 dbSNP
rs950581809 1120 dbSNP
rs919133836 1122 dbSNP
rs1313626850 1128 dbSNP
rs1309110236 1154 dbSNP
rs905475524 1155 dbSNP
rs528607230 1156 dbSNP
rs1264814062 1157 dbSNP
rs1025132389 1160 dbSNP
rs1215599752 1163 dbSNP
rs973363236 1168 dbSNP
rs1309550009 1170 dbSNP
rs1410371293 1177 dbSNP
rs199504226 1188 dbSNP
rs1186977735 1196 dbSNP
rs1311213678 1200 dbSNP
rs1467621914 1205 dbSNP
rs1429500545 1214 dbSNP
rs1164635899 1219 dbSNP
rs963691838 1227 dbSNP
rs1378477861 1230 dbSNP
rs1367271447 1235 dbSNP
rs887292632 1237 dbSNP
rs1166442382 1239 dbSNP
rs1394657460 1258 dbSNP
rs1017587713 1266 dbSNP
rs754714760 1268 dbSNP
rs1363752802 1269 dbSNP
rs1158683520 1270 dbSNP
rs563501473 1277 dbSNP
rs1311789364 1289 dbSNP
rs1047112956 1292 dbSNP
rs1235118629 1293 dbSNP
rs1166550162 1303 dbSNP
rs1273880316 1306 dbSNP
rs1328581338 1308 dbSNP
rs553883795 1319 dbSNP
rs931396081 1323 dbSNP
rs535924990 1334 dbSNP
rs898461865 1341 dbSNP
rs1414665664 1346 dbSNP
rs954833525 1356 dbSNP
rs568584271 1357 dbSNP
rs1476466812 1368 dbSNP
rs115401457 1372 dbSNP
rs1189354729 1372 dbSNP
rs199541096 1373 dbSNP
rs1471990764 1374 dbSNP
rs550325947 1375 dbSNP
rs1346563972 1382 dbSNP
rs1208164152 1385 dbSNP
rs183794082 1387 dbSNP
rs1302029436 1392 dbSNP
rs1373465661 1394 dbSNP
rs1483957778 1402 dbSNP
rs892649906 1404 dbSNP
rs1032981454 1409 dbSNP
rs913735117 1414 dbSNP
rs1222172235 1424 dbSNP
rs16886496 1426 dbSNP
rs544481346 1430 dbSNP
rs372309819 1436 dbSNP
rs573964897 1443 dbSNP
rs1209754015 1448 dbSNP
rs1278627915 1449 dbSNP
rs1163897510 1462 dbSNP
rs192390936 1465 dbSNP
rs1486860869 1479 dbSNP
rs1044118130 1480 dbSNP
rs948449250 1485 dbSNP
rs760683372 1490 dbSNP
rs980460687 1492 dbSNP
rs540222752 1499 dbSNP
rs1419295835 1514 dbSNP
rs1291337810 1515 dbSNP
rs1174914324 1516 dbSNP
rs969607469 1518 dbSNP
rs1056889878 1521 dbSNP
rs138925017 1522 dbSNP
rs1288298769 1527 dbSNP
rs773215616 1534 dbSNP
rs1451917102 1537 dbSNP
rs973715795 1551 dbSNP
rs1026234905 1558 dbSNP
rs941986837 1559 dbSNP
rs910552006 1568 dbSNP
rs1160421062 1573 dbSNP
rs1350453232 1574 dbSNP
rs1235442872 1587 dbSNP
rs995600708 1590 dbSNP
rs898615457 1604 dbSNP
rs557794986 1613 dbSNP
rs10045390 1614 dbSNP
rs545423226 1615 dbSNP
rs988260530 1616 dbSNP
rs557248644 1619 dbSNP
rs1256259776 1626 dbSNP
rs1418600431 1646 dbSNP
rs1185416370 1650 dbSNP
rs1408137867 1663 dbSNP
rs1172454343 1666 dbSNP
rs1484726326 1674 dbSNP
rs1032538087 1687 dbSNP
rs1435888248 1689 dbSNP
rs1324013983 1692 dbSNP
rs1373440968 1695 dbSNP
rs933238046 1698 dbSNP
rs1337854554 1699 dbSNP
rs913733981 1700 dbSNP
rs1274346461 1702 dbSNP
rs988411638 1706 dbSNP
rs1001515288 1709 dbSNP
rs10054376 1710 dbSNP
rs1209176616 1714 dbSNP
rs1023895673 1715 dbSNP
rs1333916759 1723 dbSNP
rs1469525880 1733 dbSNP
rs1270996509 1741 dbSNP
rs1246910805 1743 dbSNP
rs1340935039 1747 dbSNP
rs925044535 1748 dbSNP
rs1295021847 1749 dbSNP
rs1380602448 1751 dbSNP
rs1012552999 1756 dbSNP
rs3756586 1759 dbSNP
rs1188150276 1762 dbSNP
rs969013565 1765 dbSNP
rs111845852 1766 dbSNP
rs150336086 1771 dbSNP
rs1392737893 1774 dbSNP
rs951756841 1790 dbSNP
rs929100834 1797 dbSNP
rs1462098451 1799 dbSNP
rs1317921085 1801 dbSNP
rs1324997247 1808 dbSNP
rs1165304474 1813 dbSNP
rs1433371470 1813 dbSNP
rs1025799048 1815 dbSNP
rs995655905 1828 dbSNP
rs897645495 1846 dbSNP
rs1232067262 1848 dbSNP
rs1169186394 1850 dbSNP
rs1270724602 1851 dbSNP
rs1336312661 1851 dbSNP
rs1037580198 1852 dbSNP
rs1283148898 1853 dbSNP
rs962869774 1855 dbSNP
rs1217649616 1856 dbSNP
rs1249292457 1860 dbSNP
rs73136963 1863 dbSNP
rs1006939897 1867 dbSNP
rs910438457 1876 dbSNP
rs1475588017 1890 dbSNP
rs1158167943 1895 dbSNP
rs768900189 1897 dbSNP
rs749568953 1900 dbSNP
rs1402711387 1902 dbSNP
rs1361382022 1917 dbSNP
rs986025755 1918 dbSNP
rs1375298333 1919 dbSNP
rs1211402318 1924 dbSNP
rs376643948 1938 dbSNP
rs1293288605 1939 dbSNP
rs763320405 1942 dbSNP
rs1295671661 1944 dbSNP
rs1250666646 1951 dbSNP
rs1051573126 1956 dbSNP
rs1225085477 1959 dbSNP
rs1348081933 1966 dbSNP
rs1344441559 1968 dbSNP
rs933301347 1971 dbSNP
rs997437160 1980 dbSNP
rs1485227247 1983 dbSNP
rs1440461839 1993 dbSNP
rs1259565452 1999 dbSNP
rs775825488 2012 dbSNP
rs1181150528 2014 dbSNP
rs193068314 2016 dbSNP
rs570858197 2022 dbSNP
rs1394796367 2024 dbSNP
rs1433274375 2029 dbSNP
rs1396476549 2034 dbSNP
rs925439626 2044 dbSNP
rs746241093 2054 dbSNP
rs868470589 2056 dbSNP
rs372019216 2062 dbSNP
rs781685940 2065 dbSNP
rs1333480352 2091 dbSNP
rs1240663001 2092 dbSNP
rs1309556117 2098 dbSNP
rs1346827840 2104 dbSNP
rs1231760930 2112 dbSNP
rs1282266177 2122 dbSNP
rs1348492463 2133 dbSNP
rs1195232326 2143 dbSNP
rs1248430371 2150 dbSNP
rs936462997 2152 dbSNP
rs36109141 2158 dbSNP
rs925119520 2168 dbSNP
rs1044802561 2169 dbSNP
rs188514411 2171 dbSNP
rs1453486859 2185 dbSNP
rs201344528 2188 dbSNP
rs1023864289 2191 dbSNP
rs1396133115 2204 dbSNP
rs532995455 2205 dbSNP
rs1013869969 2207 dbSNP
rs1166676415 2214 dbSNP
rs562705833 2219 dbSNP
rs1392654452 2230 dbSNP
rs1369763432 2243 dbSNP
rs746640815 2243 dbSNP
rs951644752 2264 dbSNP
rs1305356938 2265 dbSNP
rs1331481537 2266 dbSNP
rs757732150 2269 dbSNP
rs1226532143 2276 dbSNP
rs1202937316 2287 dbSNP
rs918810774 2291 dbSNP
rs959682553 2299 dbSNP
rs974309805 2300 dbSNP
rs1272684825 2301 dbSNP
rs962819488 2304 dbSNP
rs1483959818 2307 dbSNP
rs1035395552 2311 dbSNP
rs550770569 2313 dbSNP
rs183239287 2315 dbSNP
rs1428311426 2330 dbSNP
rs1018402012 2331 dbSNP
rs1375251371 2332 dbSNP
rs1462986503 2333 dbSNP
rs1170760826 2334 dbSNP
rs1037865553 2336 dbSNP
rs1005981942 2338 dbSNP
rs1346040207 2345 dbSNP
rs1276808181 2348 dbSNP
rs778338614 2349 dbSNP
rs1327521593 2350 dbSNP
rs888969225 2353 dbSNP
rs561956456 2354 dbSNP
rs1381471432 2356 dbSNP
rs73136961 2366 dbSNP
rs1327193698 2367 dbSNP
rs1029648665 2389 dbSNP
rs572753684 2391 dbSNP
rs1292675688 2396 dbSNP
rs564050431 2397 dbSNP
rs1010674573 2404 dbSNP
rs1215735036 2418 dbSNP
rs923254858 2430 dbSNP
rs1266290326 2439 dbSNP
rs1052482810 2443 dbSNP
rs891811251 2449 dbSNP
rs1264371583 2455 dbSNP
rs1429628058 2473 dbSNP
rs1187874958 2478 dbSNP
rs935331530 2484 dbSNP
rs1308183996 2489 dbSNP
rs545849347 2493 dbSNP
rs979524343 2494 dbSNP
rs1452668534 2498 dbSNP
rs1044958562 2504 dbSNP
rs1312222133 2504 dbSNP
rs796118176 2504 dbSNP
rs1173998088 2505 dbSNP
rs1478110742 2506 dbSNP
rs1363021488 2508 dbSNP
rs1179732118 2509 dbSNP
rs142127120 2518 dbSNP
rs1313589599 2523 dbSNP
rs754667620 2523 dbSNP
rs917683457 2524 dbSNP
rs560063777 2529 dbSNP
rs1252407246 2535 dbSNP
rs1210320264 2536 dbSNP
rs535650576 2539 dbSNP
rs1440794119 2563 dbSNP
rs753614540 2580 dbSNP
rs574801229 2581 dbSNP
rs1486964178 2590 dbSNP
rs375564193 2593 dbSNP
rs766136489 2600 dbSNP
rs1413965836 2605 dbSNP
rs1201252465 2606 dbSNP
rs541437222 2609 dbSNP
rs941657434 2611 dbSNP
rs993146317 2616 dbSNP
rs755916198 2620 dbSNP
rs955464281 2636 dbSNP
rs1373527397 2640 dbSNP
rs757910400 2643 dbSNP
rs1303499060 2644 dbSNP
rs1372710245 2649 dbSNP
rs529673297 2649 dbSNP
rs1309456405 2663 dbSNP
rs759927745 2666 dbSNP
rs553584491 2667 dbSNP
rs1233982391 2669 dbSNP
rs1278701164 2669 dbSNP
rs534728486 2670 dbSNP
rs767458641 2671 dbSNP
rs1237494316 2674 dbSNP
rs1175077187 2679 dbSNP
rs562225492 2679 dbSNP
rs570789569 2680 dbSNP
rs1000780506 2681 dbSNP
rs1414736568 2684 dbSNP
rs1383784491 2685 dbSNP
rs1393110290 2686 dbSNP
rs1156734508 2687 dbSNP
rs1176726228 2695 dbSNP
rs1458596319 2696 dbSNP
rs1353965968 2698 dbSNP
rs1300011517 2700 dbSNP
rs1412375652 2700 dbSNP
rs903806203 2701 dbSNP
rs901719989 2711 dbSNP
rs1023460311 2721 dbSNP
rs1220267106 2723 dbSNP
rs1052788638 2727 dbSNP
rs552271402 2734 dbSNP
rs1471732656 2735 dbSNP
rs1239300668 2742 dbSNP
rs761705224 2743 dbSNP
rs925293927 2745 dbSNP
rs1188321164 2747 dbSNP
rs1446710897 2748 dbSNP
rs1266444249 2757 dbSNP
rs1250846347 2760 dbSNP
rs751644320 2761 dbSNP
rs896333624 2780 dbSNP
rs191367711 2783 dbSNP
rs543952376 2786 dbSNP
rs1418673056 2790 dbSNP
rs1272865793 2793 dbSNP
rs948152197 2794 dbSNP
rs1381950349 2795 dbSNP
rs1285512871 2797 dbSNP
rs1448082765 2804 dbSNP
rs916748634 2816 dbSNP
rs576961154 2820 dbSNP
rs1397085051 2829 dbSNP
rs1437588307 2838 dbSNP
rs1270032687 2839 dbSNP
rs78961030 2846 dbSNP
rs1216897018 2847 dbSNP
rs750736982 2854 dbSNP
rs1038036928 2855 dbSNP
rs1279465868 2868 dbSNP
rs550837549 2881 dbSNP
rs1318021096 2886 dbSNP
rs939524848 2887 dbSNP
rs1270918477 2895 dbSNP
rs911496423 2916 dbSNP
rs1163871822 2921 dbSNP
rs1403593624 2924 dbSNP
rs918818339 2939 dbSNP
rs529062085 2953 dbSNP
rs973415999 2956 dbSNP
rs763022794 2963 dbSNP
rs775629041 2967 dbSNP
rs984495978 2972 dbSNP
rs370030538 2977 dbSNP
rs1407289947 2979 dbSNP
rs953170353 2984 dbSNP
rs934122913 3003 dbSNP
rs186469920 3004 dbSNP
rs770021939 3005 dbSNP
rs1406232228 3009 dbSNP
rs1028701162 3012 dbSNP
rs746290698 3013 dbSNP
rs1299368274 3020 dbSNP
rs1340554764 3025 dbSNP
rs1475115185 3042 dbSNP
rs138043046 3045 dbSNP
rs1246216052 3047 dbSNP
rs1190755047 3068 dbSNP
rs901685802 3069 dbSNP
rs1290963701 3078 dbSNP
rs75919367 3079 dbSNP
rs759850333 3084 dbSNP
rs1228602387 3091 dbSNP
rs1033003348 3092 dbSNP
rs978786092 3096 dbSNP
rs1324069727 3110 dbSNP
rs1263771797 3118 dbSNP
rs903846194 3120 dbSNP
rs1291188193 3122 dbSNP
rs1185882385 3128 dbSNP
rs1239353578 3134 dbSNP
rs1473209260 3134 dbSNP
rs1043787431 3146 dbSNP
rs1214444999 3148 dbSNP
rs1158223882 3149 dbSNP
rs1406179905 3152 dbSNP
rs1421938655 3153 dbSNP
rs1159672558 3154 dbSNP
rs1340880818 3159 dbSNP
rs1375350355 3160 dbSNP
rs1294682701 3161 dbSNP
rs948039462 3175 dbSNP
rs1331624422 3181 dbSNP
rs1341751245 3183 dbSNP
rs12654125 3202 dbSNP
rs944858450 3202 dbSNP
rs116563691 3210 dbSNP
rs1365458833 3221 dbSNP
rs1034900670 3223 dbSNP
rs1292798551 3237 dbSNP
rs994316992 3244 dbSNP
rs939512869 3249 dbSNP
rs1258280845 3255 dbSNP
rs1443096518 3257 dbSNP
rs1037984461 3259 dbSNP
rs778395189 3259 dbSNP
rs1441829081 3264 dbSNP
rs1179642706 3267 dbSNP
rs1351599748 3272 dbSNP
rs1423610277 3274 dbSNP
rs1433334656 3279 dbSNP
rs1174844074 3284 dbSNP
rs1403667288 3299 dbSNP
rs757401670 3300 dbSNP
rs941005492 3303 dbSNP
rs889460610 3315 dbSNP
rs1374178809 3316 dbSNP
rs747531163 3323 dbSNP
rs972998132 3327 dbSNP
rs1369992204 3336 dbSNP
rs1230910998 3338 dbSNP
rs1409229535 3339 dbSNP
rs751772460 3341 dbSNP
rs908877757 3343 dbSNP
rs922758101 3345 dbSNP
rs1345684068 3346 dbSNP
rs1195283777 3349 dbSNP
rs1271042977 3349 dbSNP
rs1459259295 3349 dbSNP
rs1199516283 3350 dbSNP
rs1252703322 3360 dbSNP
rs984380090 3372 dbSNP
rs1450393944 3384 dbSNP
rs953054841 3390 dbSNP
rs1394670288 3391 dbSNP
rs1475405870 3393 dbSNP
rs1028670141 3400 dbSNP
rs1166800703 3406 dbSNP
rs1397505333 3408 dbSNP
rs578019309 3409 dbSNP
rs150211980 3411 dbSNP
rs965887478 3416 dbSNP
rs1031286327 3422 dbSNP
rs978854820 3425 dbSNP
rs1303202872 3434 dbSNP
rs999447145 3436 dbSNP
rs1226690189 3438 dbSNP
rs1276316637 3441 dbSNP
rs182229062 3453 dbSNP
rs1467346234 3454 dbSNP
rs960692423 3454 dbSNP
rs991142169 3454 dbSNP
rs1022230430 3466 dbSNP
rs1211985961 3466 dbSNP
rs1446860957 3475 dbSNP
rs1012227275 3476 dbSNP
rs1191681054 3481 dbSNP
rs1420769759 3484 dbSNP
rs1478533838 3486 dbSNP
rs1206678738 3491 dbSNP
rs1416690405 3492 dbSNP
rs895168496 3498 dbSNP
rs1300144087 3501 dbSNP
rs1217071030 3509 dbSNP
rs1369507349 3513 dbSNP
rs1456120694 3515 dbSNP
rs1295066254 3516 dbSNP
rs1391198234 3519 dbSNP
rs574662521 3520 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 166968.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 166968.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000381226.3 | 3UTR | UUUUAUUUUCUUAAUAAAAGCAGGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000381226.3 | 3UTR | UUUUAUUUUCUUAAUAAAAGCAGGGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

Error report submission