pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol MAT2A   
Synonyms MATA2, MATII, SAMS2
Description methionine adenosyltransferase 2A
Transcript NM_005911   
Expression
Putative miRNA Targets on MAT2A
3'UTR of MAT2A
(miRNA target sites are highlighted)
>MAT2A|NM_005911|3'UTR
   1 AAGTGTTAGCCTTTTTTCCCCAGACTTGTTGGCGTAGGCTACAGAGAAGCCTTCAAGCTCTGAGGGAAAGGGCCCTCCTT
  81 CCTAAATTTTCCTGTCCTCTTTCAGCTCCTGACCAGTTGCAGTCACTCTAGTCAATGACATGAATTTTAGCTTTTGTGGG
 161 GGACTGTAAGTTGGGCTTGCTATTCTGTCCCTAGGTGTTTTGTTCACCATTATAATGAATTTAGTGAGCATAGGTGATCC
 241 ATGTAACTGCCTAGAAACAACACTGTAGTAAATAATGCTTTGAAATTGAACCTTTGTGCCCTATCACCCAACGCTCCAAA
 321 GTCATAATTGCATTGACTTTCCCCACCAGATGCTGAAAATGTCCTTGTGATGTGCACGTAAAGTACTTGTAGTTCCACTT
 401 ATAGCCTCTGTCTGGCAATGCCACAGCCCTGTCAGCATGAATTTGTAATGTCTTGAGCTCTATTATGAATGTGAAGCCTT
 481 CCCCTTATCCTCCCTGTAACTTGATCCATTTCTAATTATGTAGCTCTTTGTCAGGGAGTGTTCCCTATCCAATCAATCTT
 561 GCATGTAACGCAAGTTCCCAGTTGGAGCTCCAGCCTGACATCAAAAAAGGCAGTTACCATTAAACCATCTCCCTGGTGCT
 641 TATGCTCTTAATTGCCACCTCTAACAGCACCAAATCAAAATCTCTCCACTTTCAGCTGTCTTTTGGAGGACGTACGTAAT
 721 AAGGTTTTAATTTAGTAAACCAATCCTATGCATGGTTTCAGCACTAGCCAAACCTCACCAACTCCTAGTTCTAGAAAAAC
 801 AGGCACTTGGCAGCCTTGTGATGTCATACAGAGAAGTCACAGGGCAGTACCTGAGGGTCTGTAGGTTGCACACTTTGGTA
 881 CCAGATAACTTTTTTTTTTCTTTATAAGAAAGCCTGAGTACTCCACACTGCACAATAACTCCTCCCAGGGTTTTAACTTT
 961 GTTTTATTTTCAAAACCAGGTCCAATGAGCTTTCTGAACAGCTGGTGTAGCTACAGAGAAACCAGCTTCCTTCAGAGAGC
1041 AGTGCTTTTGGCGGGGAGGAGGAAATCCCTTCATACTTGAACGTTTTCTAATTGCTTATTTATTGTATTCTGGGGTATGG
1121 CGTAAGTACAGAGAAGCCATCACCTCAGATGGCAGCTTTTAAAAGATTTTTTTTTTTTCTCTCAACACCATGATTCCTTT
1201 AACAACATGTTTCCAGCATTCCCAGGTAGGCCAAGGTGTCCTACAGAAAAACCTTGGGTTAGACCTACAGGGGGTCTGGC
1281 TGGTGTTAACAGAAGGGAGGGCAGAGCTGGTGCGGCTGGCCATGGAGAAAGCTGACTTGGCTGGTGTGGTACAGAGAAGC
1361 CAGCTTGTTTACATGCTTATTCCATGACTGCTTGCCCTAAGCAGAAAGTGCCTTTCAGGATCTATTTTTGGAGGTTTATT
1441 ACGTATGTCTGGTTCTCAATTCCAACAGTTTAATGAAGATCTAAATAAAATGCTAGGTTCTACCTTAAAAAAAAAAAAAA
1521 AAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacGUUUUCAUUAACACCAAAAa 5'
               |: | |||| |  |||||| 
Target 5' gaggaCGTACGTAA-TAAGGTTTTa 3'
706 - 729 127.00 -7.60
2
miRNA  3' acCACGU---UUUCAUUAACACCAAaaa 5'
            |||||   |||||| |||| |||   
Target 5' atGTGCACGTAAAGTACTTGTAGTTcca 3'
370 - 397 123.00 -12.12
3
miRNA  3' acCACGU-UUUCAUUAACACCAAAAa 5'
            || :|  | |||  | ||||| | 
Target 5' agGTTTATTACGTATGTCTGGTTCTc 3'
1432 - 1457 123.00 -6.92
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
337171 1166 ClinVar
337172 1167 ClinVar
337173 1268 ClinVar
898899 1315 ClinVar
898900 1323 ClinVar
898901 1365 ClinVar
337174 1419 ClinVar
337175 1437 ClinVar
895937 1443 ClinVar
895938 1482 ClinVar
COSN31491713 2 COSMIC
COSN30569488 8 COSMIC
COSN31518289 17 COSMIC
COSN31482386 30 COSMIC
COSN14532144 93 COSMIC
COSN9391534 100 COSMIC
COSN20288801 186 COSMIC
COSN26556738 250 COSMIC
COSN20090570 279 COSMIC
COSN31601278 302 COSMIC
COSN26670157 313 COSMIC
COSN5865552 336 COSMIC
COSN31588545 347 COSMIC
COSN31559515 535 COSMIC
COSN31545991 562 COSMIC
COSN26601554 580 COSMIC
COSN6559526 605 COSMIC
COSN31563363 643 COSMIC
COSN31489295 662 COSMIC
COSN31518105 716 COSMIC
COSN22229193 749 COSMIC
COSN31959778 769 COSMIC
COSN16524245 775 COSMIC
COSN28669283 869 COSMIC
COSN28250198 914 COSMIC
COSN20090571 1017 COSMIC
COSN27886919 1152 COSMIC
COSN31529730 1180 COSMIC
COSN28249874 1182 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171039097 1 dbSNP
rs776431969 8 dbSNP
rs1359092024 10 dbSNP
rs1412686279 11 dbSNP
rs1332323028 12 dbSNP
rs372099842 13 dbSNP
rs1448793530 17 dbSNP
rs1315047771 19 dbSNP
rs1338624920 21 dbSNP
rs749458057 23 dbSNP
rs769156900 30 dbSNP
rs774638304 31 dbSNP
rs1342163005 34 dbSNP
rs762233743 37 dbSNP
rs1277360846 39 dbSNP
rs1312288358 50 dbSNP
rs952350922 58 dbSNP
rs1180192001 70 dbSNP
rs1483002521 76 dbSNP
rs1236811167 86 dbSNP
rs1204174398 92 dbSNP
rs1233656160 98 dbSNP
rs1486508152 104 dbSNP
rs984413834 106 dbSNP
rs1484269551 109 dbSNP
rs148739699 112 dbSNP
rs1342436786 114 dbSNP
rs1297358338 120 dbSNP
rs1417541111 123 dbSNP
rs940192158 125 dbSNP
rs1417193735 126 dbSNP
rs1369041877 129 dbSNP
rs1475832951 136 dbSNP
rs1430875852 141 dbSNP
rs1165445622 143 dbSNP
rs530472867 149 dbSNP
rs1163012698 153 dbSNP
rs1423286919 155 dbSNP
rs1407707065 158 dbSNP
rs1414665222 163 dbSNP
rs1188510143 164 dbSNP
rs1476155208 165 dbSNP
rs1249259783 166 dbSNP
rs1480869596 167 dbSNP
rs992982477 167 dbSNP
rs1252678305 168 dbSNP
rs1218975506 174 dbSNP
rs1320547079 177 dbSNP
rs549048191 179 dbSNP
rs917340680 183 dbSNP
rs1235611950 184 dbSNP
rs1349174972 186 dbSNP
rs948859314 192 dbSNP
rs1376036100 195 dbSNP
rs1291961810 201 dbSNP
rs1457616314 206 dbSNP
rs1044866892 220 dbSNP
rs1411469041 222 dbSNP
rs904570942 223 dbSNP
rs1354525598 233 dbSNP
rs1455769270 234 dbSNP
rs1409644134 236 dbSNP
rs1181427467 237 dbSNP
rs1419417499 239 dbSNP
rs1245439519 240 dbSNP
rs935963530 242 dbSNP
rs1337599363 243 dbSNP
rs1053637181 246 dbSNP
rs1487960386 251 dbSNP
rs1273503817 264 dbSNP
rs1215007075 266 dbSNP
rs142372744 277 dbSNP
rs15351 278 dbSNP
rs1268023991 288 dbSNP
rs1009830797 292 dbSNP
rs1319055395 295 dbSNP
rs1299662967 302 dbSNP
rs1386364304 304 dbSNP
rs371796804 305 dbSNP
rs1328239893 308 dbSNP
rs1432962922 311 dbSNP
rs1344621433 312 dbSNP
rs868266117 313 dbSNP
rs562646394 314 dbSNP
rs990394448 317 dbSNP
rs1486164948 320 dbSNP
rs796159921 322 dbSNP
rs534733325 325 dbSNP
rs996646224 332 dbSNP
rs1253219143 341 dbSNP
rs1195159153 343 dbSNP
rs1028075771 354 dbSNP
rs1246905898 357 dbSNP
rs952362235 361 dbSNP
rs983754653 364 dbSNP
rs1254828628 372 dbSNP
rs1166772986 378 dbSNP
rs1232969237 378 dbSNP
rs1390206551 379 dbSNP
rs1226499473 381 dbSNP
rs1431271658 382 dbSNP
rs1015867868 387 dbSNP
rs961626588 388 dbSNP
rs1382644226 390 dbSNP
rs546694561 392 dbSNP
rs571712952 396 dbSNP
rs539230166 398 dbSNP
rs867903069 399 dbSNP
rs1175075474 401 dbSNP
rs1447298989 401 dbSNP
rs6711750 403 dbSNP
rs1193273739 404 dbSNP
rs542611069 406 dbSNP
rs1254658584 407 dbSNP
rs926003757 410 dbSNP
rs936014197 419 dbSNP
rs1282935879 427 dbSNP
rs1429890230 430 dbSNP
rs1203210023 431 dbSNP
rs1298450528 432 dbSNP
rs1367371874 437 dbSNP
rs1271054365 438 dbSNP
rs1229679322 458 dbSNP
rs1053024782 464 dbSNP
rs1232376902 465 dbSNP
rs536237196 467 dbSNP
rs1279873920 471 dbSNP
rs866919338 473 dbSNP
rs1375773820 478 dbSNP
rs1314498025 479 dbSNP
rs1427660599 482 dbSNP
rs1346217852 485 dbSNP
rs1168185796 489 dbSNP
rs1476090835 490 dbSNP
rs1202519257 493 dbSNP
rs1282815268 494 dbSNP
rs913204821 506 dbSNP
rs184837848 508 dbSNP
rs1187391928 509 dbSNP
rs945343846 513 dbSNP
rs1259962509 515 dbSNP
rs572981137 516 dbSNP
rs1446960833 519 dbSNP
rs1482963105 520 dbSNP
rs1041354002 531 dbSNP
rs1197813121 540 dbSNP
rs1354284705 542 dbSNP
rs540302323 544 dbSNP
rs1264952628 549 dbSNP
rs901047641 550 dbSNP
rs144911618 553 dbSNP
rs189711755 557 dbSNP
rs1407740658 563 dbSNP
rs1329069013 564 dbSNP
rs1411323189 566 dbSNP
rs888167879 569 dbSNP
rs545194929 570 dbSNP
rs1394079550 571 dbSNP
rs1180702708 574 dbSNP
rs1466395839 575 dbSNP
rs1233843420 581 dbSNP
rs1174140129 582 dbSNP
rs1382451569 588 dbSNP
rs1267022322 589 dbSNP
rs1214387799 590 dbSNP
rs1400054167 590 dbSNP
rs1337103806 591 dbSNP
rs1321062296 592 dbSNP
rs1226528403 593 dbSNP
rs1391009441 593 dbSNP
rs1438785764 595 dbSNP
rs1279932835 600 dbSNP
rs1302500481 604 dbSNP
rs1328990250 607 dbSNP
rs748649521 610 dbSNP
rs1331864210 614 dbSNP
rs1396076361 617 dbSNP
rs758737664 618 dbSNP
rs560991019 620 dbSNP
rs1278165339 625 dbSNP
rs1014546284 632 dbSNP
rs1024938276 641 dbSNP
rs1477278722 645 dbSNP
rs1377263991 647 dbSNP
rs1194545491 650 dbSNP
rs1469847286 654 dbSNP
rs1350329421 656 dbSNP
rs1206678255 662 dbSNP
rs535170379 672 dbSNP
rs771181010 679 dbSNP
rs1342668115 682 dbSNP
rs1302190722 683 dbSNP
rs970259542 685 dbSNP
rs1465902185 690 dbSNP
rs1867880 693 dbSNP
rs1211243117 694 dbSNP
rs1429503543 697 dbSNP
rs1346298077 701 dbSNP
rs980209264 712 dbSNP
rs1433435376 713 dbSNP
rs1394885634 715 dbSNP
rs1174440135 717 dbSNP
rs1455753618 725 dbSNP
rs528550929 726 dbSNP
rs1185999529 729 dbSNP
rs926054748 742 dbSNP
rs1242607591 744 dbSNP
rs957473607 753 dbSNP
rs1440434587 764 dbSNP
rs1472139632 773 dbSNP
rs191347244 775 dbSNP
rs1211074871 778 dbSNP
rs1349598237 782 dbSNP
rs1390710350 790 dbSNP
rs988841637 792 dbSNP
rs913267650 793 dbSNP
rs1362093910 794 dbSNP
rs1459975102 798 dbSNP
rs1446487539 802 dbSNP
rs1375156011 803 dbSNP
rs1313871355 805 dbSNP
rs1437043321 807 dbSNP
rs1325336696 809 dbSNP
rs1368931892 813 dbSNP
rs1170067959 814 dbSNP
rs944702983 816 dbSNP
rs1388750477 821 dbSNP
rs1474188092 825 dbSNP
rs1188379943 828 dbSNP
rs1256810184 828 dbSNP
rs1486559712 831 dbSNP
rs1249232250 838 dbSNP
rs1050108 845 dbSNP
rs1040972738 847 dbSNP
rs1189695949 848 dbSNP
rs1307513466 857 dbSNP
rs1274512537 858 dbSNP
rs563435482 866 dbSNP
rs922479891 874 dbSNP
rs1229375817 877 dbSNP
rs1290796235 879 dbSNP
rs1294499613 879 dbSNP
rs1333378698 882 dbSNP
rs1233158991 886 dbSNP
rs932486523 887 dbSNP
rs1005336170 890 dbSNP
rs1461045183 890 dbSNP
rs550275542 890 dbSNP
rs888264150 890 dbSNP
rs1417054644 892 dbSNP
rs11537669 901 dbSNP
rs1165619589 903 dbSNP
rs1488483037 905 dbSNP
rs1248174300 914 dbSNP
rs1176207786 915 dbSNP
rs1037185525 918 dbSNP
rs1211335116 922 dbSNP
rs1234315806 924 dbSNP
rs1211262858 926 dbSNP
rs778027496 927 dbSNP
rs1482634166 928 dbSNP
rs745453983 936 dbSNP
rs1024572825 937 dbSNP
rs1327454679 940 dbSNP
rs1306742962 945 dbSNP
rs1474196562 949 dbSNP
rs970689927 950 dbSNP
rs1001721327 958 dbSNP
rs1375788347 958 dbSNP
rs1440227577 969 dbSNP
rs1369199015 975 dbSNP
rs1395355837 978 dbSNP
rs1459501859 979 dbSNP
rs780961774 979 dbSNP
rs1033168197 981 dbSNP
rs1166426235 984 dbSNP
rs957528509 995 dbSNP
rs1361776737 1001 dbSNP
rs1410624452 1022 dbSNP
rs530858793 1031 dbSNP
rs1310265555 1033 dbSNP
rs193153527 1034 dbSNP
rs1409676015 1045 dbSNP
rs1353893910 1046 dbSNP
rs1191402246 1053 dbSNP
rs1414711596 1054 dbSNP
rs1253100585 1058 dbSNP
rs1020750494 1062 dbSNP
rs377450065 1063 dbSNP
rs1260713803 1066 dbSNP
rs1240186938 1068 dbSNP
rs769445498 1069 dbSNP
rs1246324876 1074 dbSNP
rs1301478989 1081 dbSNP
rs528107494 1083 dbSNP
rs371101314 1084 dbSNP
rs1371743567 1087 dbSNP
rs1205363146 1091 dbSNP
rs1382671421 1096 dbSNP
rs976460747 1096 dbSNP
rs922563709 1108 dbSNP
rs1484566600 1115 dbSNP
rs1454093295 1117 dbSNP
rs1346775237 1122 dbSNP
rs1171306013 1123 dbSNP
rs1453427925 1123 dbSNP
rs932581248 1141 dbSNP
rs1194943870 1144 dbSNP
rs985362499 1155 dbSNP
rs370014861 1166 dbSNP
rs909754447 1166 dbSNP
rs1036790776 1167 dbSNP
rs1348859473 1167 dbSNP
rs886056355 1167 dbSNP
rs1305968246 1169 dbSNP
rs896867660 1170 dbSNP
rs1325970199 1172 dbSNP
rs1382731073 1178 dbSNP
rs571321000 1178 dbSNP
rs1363731984 1179 dbSNP
rs1181271111 1180 dbSNP
rs1256752195 1182 dbSNP
rs1425680790 1184 dbSNP
rs1168466588 1185 dbSNP
rs1459993932 1190 dbSNP
rs1372026232 1191 dbSNP
rs1194450449 1192 dbSNP
rs1430810005 1200 dbSNP
rs749255803 1201 dbSNP
rs1437425988 1207 dbSNP
rs1430661455 1210 dbSNP
rs1486229480 1213 dbSNP
rs538854890 1218 dbSNP
rs1282699198 1233 dbSNP
rs1194325563 1234 dbSNP
rs905521973 1235 dbSNP
rs15352 1248 dbSNP
rs1001773700 1252 dbSNP
rs1033223988 1253 dbSNP
rs759788569 1268 dbSNP
rs1465842371 1270 dbSNP
rs1303982107 1275 dbSNP
rs1010329050 1283 dbSNP
rs1020382748 1290 dbSNP
rs1355892117 1295 dbSNP
rs1335730437 1302 dbSNP
rs1063503 1304 dbSNP
rs1389337847 1308 dbSNP
rs551196531 1314 dbSNP
rs867667606 1315 dbSNP
rs149495444 1323 dbSNP
rs1164880630 1327 dbSNP
rs1260077362 1345 dbSNP
rs976174967 1345 dbSNP
rs914377375 1346 dbSNP
rs1179848329 1350 dbSNP
rs1029437962 1351 dbSNP
rs3209936 1357 dbSNP
rs953351844 1365 dbSNP
rs3209940 1367 dbSNP
rs1332821220 1373 dbSNP
rs1276321340 1384 dbSNP
rs985377047 1386 dbSNP
rs909765667 1389 dbSNP
rs1335176210 1393 dbSNP
rs1285740639 1395 dbSNP
rs1236696498 1402 dbSNP
rs1334790056 1418 dbSNP
rs886056356 1419 dbSNP
rs1345531861 1420 dbSNP
rs1448306589 1425 dbSNP
rs1391688425 1430 dbSNP
rs377381751 1437 dbSNP
rs972954833 1440 dbSNP
rs1484208583 1443 dbSNP
rs1157180478 1444 dbSNP
rs1469993083 1452 dbSNP
rs1364569447 1466 dbSNP
rs554866641 1474 dbSNP
rs949866556 1482 dbSNP
rs1252467856 1497 dbSNP
rs1450161562 1499 dbSNP
rs1190813876 1503 dbSNP
rs1468853701 1507 dbSNP
rs1292008040 1509 dbSNP
rs1203132381 1510 dbSNP
rs772325888 1510 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4144.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000306434.3 | 3UTR | AUAACUUUUUUUUUUCUUUAUAAGAAAGCCUGAGUACUCCACACUGCACAAUAACUCCUCCCAGGGUUUUAACUUUGUUUUAUUUUCAAAACCAGGUCCAAUGAGCUUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000306434.3 | 3UTR | UACUCCACACUGCACAAUAACUCCUCCCAGGGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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