miRTarBase - #MIRT507106


—
pre-miRNA Information
pre-miRNA hsa-mir-3136   
Genomic Coordinates chr3: 69048958 - 69049035
Description Homo sapiens miR-3136 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3136-5p
Sequence 10| CUGACUGAAUAGGUAGGGUCAUU |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1478587998 4 dbSNP
rs912074637 12 dbSNP
rs1465866748 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GOLGA8B   
Synonyms GOLGA5
Description golgin A8 family member B
Transcript NM_001023567   
Expression
Putative miRNA Targets on GOLGA8B
3'UTR of GOLGA8B
(miRNA target sites are highlighted)		 
>GOLGA8B|NM_001023567|3'UTR
   1 ACACCACCATCATCAAAGAGCTGCTCAAGAAATTTTTAAAAACGAAACAAAGTTATGGGGTTAATCTCCTACACAATTCA
  81 TTTACTTCATTTGAATGTTAGAGCTACTCATGATTATTTGTGTTTCTAATTTATAGTTTAAGTTTATTTGTAAAAAGTTA
 161 AAAGAGAGTGGGTCTCTGTGCCTCTCACTGATGTTCACTCTGGCATCCTTTAGCATTTTTCTTTTTTCATTTCATAATTG
 241 TAGGTCATTAGCATGCATATCGAGTTTGCCCTTACGTGGTGGGAGTTCAAACACACAAAGACCCACTCTTTGCACAAAAC
 321 TGTTCTCGCTGGTTTGGAATAGGCTCCCGTGCTTTTTTAATGTTATTGCAGCATGGATGTTCATTACAGAATTCAGATAA
 401 AATTTGCTAATGTTCTGCTATGATGTTTGATCTCATCTTAATCACAGTGAGCTCTTCCATAGCTCAATATGCGGTTTGCC
 481 CTCAAGTGTGCACTGTTTATTACTTTGTAATATGCCACTATGAGTACTGACACTTAGAGCTGTTTAAAGGCCGAGAACTG
 561 GAAACAGCCTTTCCTCCATTTTCTGTGTATTGGTGATGGGAGTGATAACCTTTTGGGGGAGCTTTCTAAATCTCGCAGAA
 641 GAGGAAAGTGGCCTGCTCTGGCAGGTATGTGCAGGATACAGTGTGTTTCATCTGTTCCGGTGCCAAGAATGAGCACTGTA
 721 CTGTGGCAGTTCCCTTTGGATTTGTATGTGCTCTGGGCTCATGAAGATATTGCATCGTGAGCTGCAGCAGTTGCACTCTT
 801 TTTCAGTGACCTAAAAATGGCTTATTTCCGAGGAATGAAAGGCTGCCATCGTTGGCTGTGGATGTGGAAAACCTTTCCTA
 881 GCTTAGAGCATTTGTATCTACAATACATTTTAAAGTCAGAGTTCGTGTTCCCTGTTTTAATCACATGACTACCTGTCCCA
 961 GTACACGAAAGGGCGCTGGTTGGCATTCTTCTTAATGTATTTAGTAAAGATCATAAGACATCCTTTAAGAGTTTAAATGT
1041 CTCTGAAACAGGCATACAGGCTCTAGTCAAGAATGAATTAGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTCTG
1121 TTCATGGAGCTTCTTTGAGGCTTGAAGTTTGATTTTACTATCTAGACCTCTCTGGCTAATACCTATTCTTCAACCACCTC
1201 GGTTACTCTGACATAGGAATTTACTTCTTTTCCTTGAGTGGAAAACACTTTAGAAAATAATAACAAACATTATTATAAAC
1281 TAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAATTTTAGTAGACAGTATTATATTATCTTTGAAAATCAAGGAGA
1361 AGTTTATGCAACTGAAAATGTTTACACACTGTGCTGCAATCTACTGTTTGTGAATGTCAATGTATTATCAGGAAACATGT
1441 CTATACGATCGCAGAGTTGTATTTCCTCACAAACTTCTTTACGAAGAGTGAAATATGTTTTTGTACCTCTCAGTTTCAGT
1521 CAGGGACATATTTTGTGCAATATTTCTGTGATTGTGCCTATGCGTGATGAGTGAATGCATTTCAATCATACATTGCCTAA
1601 ATCATAACTTGATGATGCTTGGGAAAGAATCAACAGTTAAAACTTCATGAAGTTCTAATGTCTGTGTTCCAAAACACATC
1681 ACATTATTAGGTTGTAGGGAGATATGTATGTGTGCTCCCTGGGGTGGGGAGTTTTCTAGTTACTAGACCATCTCCATTTT
1761 TAGCACTTGGCAGCCTCATGATCCTTTTATAAATAGGAGATTAACAGGAGAGCAGCAATACGATTTTGCCAATGGAATAA
1841 CAGATTTGCCGGCATTCACTGAAAGAGGGCAGATATTGGGTCCTTGTGACTTCAACTGACTCTTCCGAATTGTATGAATT
1921 TATCAATGTATTAGATAAACCCAGTTTCAGAATAATAAAGAAAAAATATTAGACCAAATAATGTGGCTAATAGTGGTATG
2001 ATTTCTAGCCCGTGGGTTTAAAACTGTATCCTAAAGAGTCATTTTAAAATAATATAAATATTTAAAAGTGTAACTGCTAT
2081 CTTTATGTTCTGAAATAAGTTAAAACATTTTAAAATATGAATACTGTAGTTTAAAAGAAAGAAATGGTGGGAAGGAAAAG
2161 TAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTGTTTGCCAAGTTTTCTTAGAATGAATTTTACCAATGTATGGGTTC
2241 TTGTTAACAGAATGTGTAACAGAAATACTGAAAGACTTTTGCCTAAAGTGGCATTATTGACTGCTGGTGTGATGCTACTG
2321 TAATGTGATAAATTATTAAATTGTTGCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuACUGGGAUGGAU-AAGUCAGUc 5'
            ||  ||| :| : |||||||| 
Target 5' ttTGTACCTCTCAGTTTCAGTCAg 3'
 1500 - 1523 157.00 -17.60
2 
miRNA  3' uuACUGGGAUGGAUAAGUCAGUc 5'
            | :| || |:| |||||| | 
Target 5' agTTGCACT-CTTTTTCAGTGAc 3'
 789 - 810 128.00 -8.50
3 
miRNA  3' uuacuGGGAUG-GAUAAGUCAGUc 5'
               :||||| | ||||| |:| 
Target 5' taatcTCCTACACAATTCATTTAc 3'
 62 - 85 122.00 -9.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30105335 24 COSMIC
COSN31491055 26 COSMIC
COSN30113413 32 COSMIC
COSN26465934 56 COSMIC
COSN30167240 61 COSMIC
COSN30493124 79 COSMIC
COSN26465933 105 COSMIC
COSN19363808 146 COSMIC
COSN30165123 166 COSMIC
COSN30172385 190 COSMIC
COSN26580961 308 COSMIC
COSN26580263 310 COSMIC
COSN26581988 322 COSMIC
COSN26581487 327 COSMIC
COSN26648791 346 COSMIC
COSN24294729 376 COSMIC
COSN26558473 379 COSMIC
COSN31546855 472 COSMIC
COSN31556750 484 COSMIC
COSN26745287 533 COSMIC
COSN26560115 553 COSMIC
COSN31556802 589 COSMIC
COSN26560114 604 COSMIC
COSN26581722 626 COSMIC
COSN1175959 635 COSMIC
COSN7051284 681 COSMIC
COSN32057967 770 COSMIC
COSN32055852 925 COSMIC
COSN5396382 1265 COSMIC
COSN28703323 1374 COSMIC
COSN28648739 1420 COSMIC
COSN31479888 1432 COSMIC
COSN26577960 1447 COSMIC
COSN28645136 1474 COSMIC
COSN31594994 1482 COSMIC
COSN28648651 1496 COSMIC
COSN31522447 1512 COSMIC
COSN25077526 1540 COSMIC
COSN19658665 1563 COSMIC
COSN26465461 1564 COSMIC
COSN19658664 1571 COSMIC
COSN26507740 1629 COSMIC
COSN26466237 1637 COSMIC
COSN5173591 1777 COSMIC
COSN26559684 1783 COSMIC
COSN9623958 1789 COSMIC
COSN26582183 1799 COSMIC
COSN26668671 1818 COSMIC
COSN26647741 1822 COSMIC
COSN26579051 1872 COSMIC
COSN26667844 1878 COSMIC
COSN26554825 1900 COSMIC
COSN20611347 1906 COSMIC
COSN19655571 1989 COSMIC
COSN32063994 2068 COSMIC
COSN31549314 2165 COSMIC
COSN28652397 2326 COSMIC
COSN26506931 2327 COSMIC
COSN26582182 2394 COSMIC
COSN30288642 2421 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs558906988 3 dbSNP
rs1432260380 4 dbSNP
rs745822399 5 dbSNP
rs1326013315 8 dbSNP
rs1460534150 10 dbSNP
rs778700464 14 dbSNP
rs1404212969 16 dbSNP
rs534702670 17 dbSNP
rs1346170292 19 dbSNP
rs1475646247 20 dbSNP
rs756995127 24 dbSNP
rs533862125 27 dbSNP
rs1469865427 28 dbSNP
rs777265006 29 dbSNP
rs1213142877 34 dbSNP
rs1450038733 37 dbSNP
rs1275446164 43 dbSNP
rs755871019 44 dbSNP
rs1490012316 45 dbSNP
rs1339217590 47 dbSNP
rs752214878 50 dbSNP
rs899746375 56 dbSNP
rs566477685 64 dbSNP
rs548197020 65 dbSNP
rs1372192164 71 dbSNP
rs1475518571 74 dbSNP
rs1000601849 83 dbSNP
rs536297061 88 dbSNP
rs568882474 89 dbSNP
rs1423949934 95 dbSNP
rs903150613 103 dbSNP
rs1042196439 104 dbSNP
rs1406907834 105 dbSNP
rs950140716 105 dbSNP
rs896001238 128 dbSNP
rs1272301264 133 dbSNP
rs1357655568 134 dbSNP
rs1399746426 136 dbSNP
rs1055961587 140 dbSNP
rs1490976429 141 dbSNP
rs1160669971 146 dbSNP
rs773937208 147 dbSNP
rs1447240263 164 dbSNP
rs1194808705 166 dbSNP
rs1241048337 166 dbSNP
rs1377350501 168 dbSNP
rs1163971378 170 dbSNP
rs550862118 174 dbSNP
rs190112464 176 dbSNP
rs200453978 181 dbSNP
rs920847097 182 dbSNP
rs565070904 186 dbSNP
rs973801631 190 dbSNP
rs1237451306 196 dbSNP
rs546513830 211 dbSNP
rs1259328768 214 dbSNP
rs1206380032 228 dbSNP
rs567501959 236 dbSNP
rs1485986175 240 dbSNP
rs1255112460 243 dbSNP
rs941029056 246 dbSNP
rs1244705691 252 dbSNP
rs1417265845 253 dbSNP
rs560260566 261 dbSNP
rs982955584 262 dbSNP
rs1454425494 266 dbSNP
rs955121234 274 dbSNP
rs541924444 275 dbSNP
rs574451752 279 dbSNP
rs1469444377 286 dbSNP
rs1218503719 290 dbSNP
rs1339098397 294 dbSNP
rs1320691045 301 dbSNP
rs185685651 306 dbSNP
rs1390175369 312 dbSNP
rs4144689 314 dbSNP
rs1401745740 319 dbSNP
rs1301360832 321 dbSNP
rs1260671446 327 dbSNP
rs544860558 328 dbSNP
rs1264786239 329 dbSNP
rs1471098515 332 dbSNP
rs1479573363 336 dbSNP
rs963969281 339 dbSNP
rs1430019791 345 dbSNP
rs1170072533 348 dbSNP
rs757479859 349 dbSNP
rs1000079509 351 dbSNP
rs71205220 357 dbSNP
rs1226198369 366 dbSNP
rs1014784584 368 dbSNP
rs1297946247 376 dbSNP
rs895886806 377 dbSNP
rs866363456 378 dbSNP
rs2655336 381 dbSNP
rs1428951036 383 dbSNP
rs1280838303 385 dbSNP
rs1344263083 399 dbSNP
rs1223586585 403 dbSNP
rs1303029200 405 dbSNP
rs1203609470 412 dbSNP
rs1305378159 412 dbSNP
rs1251629620 415 dbSNP
rs577493521 447 dbSNP
rs751530122 457 dbSNP
rs2655335 458 dbSNP
rs1001698933 459 dbSNP
rs113580125 463 dbSNP
rs1427592155 467 dbSNP
rs572888394 470 dbSNP
rs1038359902 472 dbSNP
rs192374245 473 dbSNP
rs536370838 481 dbSNP
rs908216880 487 dbSNP
rs1365491674 488 dbSNP
rs1405079577 489 dbSNP
rs1294742171 496 dbSNP
rs1359468865 503 dbSNP
rs1213571536 513 dbSNP
rs1296038780 514 dbSNP
rs1046712756 515 dbSNP
rs568845473 518 dbSNP
rs1228579682 520 dbSNP
rs1360044397 522 dbSNP
rs1222460659 531 dbSNP
rs4041351 533 dbSNP
rs1311060884 534 dbSNP
rs1186091073 541 dbSNP
rs1454726472 550 dbSNP
rs1451781758 552 dbSNP
rs1407115261 553 dbSNP
rs1330752596 558 dbSNP
rs1385200018 561 dbSNP
rs933765207 568 dbSNP
rs763881386 571 dbSNP
rs1166314638 573 dbSNP
rs1429592635 574 dbSNP
rs1289152124 576 dbSNP
rs922352083 586 dbSNP
rs762410209 592 dbSNP
rs963852903 594 dbSNP
rs925765114 596 dbSNP
rs979101073 604 dbSNP
rs967308715 613 dbSNP
rs1315136673 634 dbSNP
rs4041350 635 dbSNP
rs1269061866 637 dbSNP
rs1181531699 644 dbSNP
rs1446078754 647 dbSNP
rs1243437823 652 dbSNP
rs533124482 654 dbSNP
rs1435617214 655 dbSNP
rs1014254971 664 dbSNP
rs960147267 665 dbSNP
rs1196840477 668 dbSNP
rs1034444333 669 dbSNP
rs1399670564 679 dbSNP
rs1159170158 681 dbSNP
rs182159642 685 dbSNP
rs1467870144 687 dbSNP
rs538910414 692 dbSNP
rs1001578140 693 dbSNP
rs1383180327 695 dbSNP
rs1248707737 697 dbSNP
rs1277774474 698 dbSNP
rs1383778016 699 dbSNP
rs899347635 706 dbSNP
rs760586513 710 dbSNP
rs571493137 716 dbSNP
rs1289023079 721 dbSNP
rs1444616577 727 dbSNP
rs1331508737 729 dbSNP
rs1201942898 751 dbSNP
rs191481674 752 dbSNP
rs1005573834 755 dbSNP
rs1212666660 760 dbSNP
rs1231724811 761 dbSNP
rs886674758 767 dbSNP
rs141780192 770 dbSNP
rs1413469093 772 dbSNP
rs1479262041 773 dbSNP
rs1175187615 775 dbSNP
rs1410404920 776 dbSNP
rs544128186 777 dbSNP
rs1326568783 781 dbSNP
rs1390011466 788 dbSNP
rs1161428849 790 dbSNP
rs1047206147 793 dbSNP
rs1385441911 798 dbSNP
rs1352341378 804 dbSNP
rs560758512 805 dbSNP
rs16954442 806 dbSNP
rs1345948236 808 dbSNP
rs1221335888 809 dbSNP
rs3179274 818 dbSNP
rs922237261 829 dbSNP
rs1039446703 830 dbSNP
rs530155736 832 dbSNP
rs1253354976 843 dbSNP
rs1489678350 844 dbSNP
rs1198053018 845 dbSNP
rs1377881515 850 dbSNP
rs16954481 851 dbSNP
rs544312271 855 dbSNP
rs577455839 856 dbSNP
rs772747390 856 dbSNP
rs1059872 862 dbSNP
rs1363621572 864 dbSNP
rs16954482 867 dbSNP
rs1360667017 881 dbSNP
rs942425147 890 dbSNP
rs1427195299 896 dbSNP
rs565484767 902 dbSNP
rs1438818365 919 dbSNP
rs1268801586 920 dbSNP
rs925808840 922 dbSNP
rs978600833 924 dbSNP
rs72486688 925 dbSNP
rs1357899958 932 dbSNP
rs868185459 933 dbSNP
rs753363252 945 dbSNP
rs1267375862 946 dbSNP
rs1452984133 951 dbSNP
rs967741320 953 dbSNP
rs913141660 956 dbSNP
rs144233134 957 dbSNP
rs992712585 959 dbSNP
rs1383349753 961 dbSNP
rs960033404 964 dbSNP
rs1391469442 966 dbSNP
rs555226393 967 dbSNP
rs1301261881 971 dbSNP
rs1406734399 972 dbSNP
rs1316589722 974 dbSNP
rs1365916542 984 dbSNP
rs1001630397 988 dbSNP
rs1300218369 994 dbSNP
rs1059874 1006 dbSNP
rs1245804263 1009 dbSNP
rs1265513434 1010 dbSNP
rs1357932013 1011 dbSNP
rs112862014 1012 dbSNP
rs1465042389 1013 dbSNP
rs1190310637 1015 dbSNP
rs1240988308 1018 dbSNP
rs1059876 1019 dbSNP
rs963443130 1028 dbSNP
rs1459566385 1034 dbSNP
rs1156873700 1038 dbSNP
rs1158624521 1041 dbSNP
rs557406348 1043 dbSNP
rs1477434940 1052 dbSNP
rs1388235316 1063 dbSNP
rs1427773509 1065 dbSNP
rs1322980345 1066 dbSNP
rs1404277882 1073 dbSNP
rs1424284453 1075 dbSNP
rs1486128804 1081 dbSNP
rs1490662665 1081 dbSNP
rs1314136463 1087 dbSNP
rs1342759444 1093 dbSNP
rs575447628 1096 dbSNP
rs1278403348 1097 dbSNP
rs1262845163 1103 dbSNP
rs1210144109 1109 dbSNP
rs1261028932 1120 dbSNP
rs1005047992 1123 dbSNP
rs1200811182 1132 dbSNP
rs1448945205 1133 dbSNP
rs1417206540 1134 dbSNP
rs886724600 1142 dbSNP
rs1411254965 1147 dbSNP
rs1285279745 1151 dbSNP
rs1161731261 1162 dbSNP
rs1218690198 1172 dbSNP
rs775926558 1174 dbSNP
rs1285303801 1183 dbSNP
rs1390122095 1185 dbSNP
rs1225208140 1187 dbSNP
rs1346079342 1189 dbSNP
rs1306889099 1192 dbSNP
rs1350496281 1192 dbSNP
rs1288066327 1193 dbSNP
rs997684288 1200 dbSNP
rs183116767 1201 dbSNP
rs1233760292 1205 dbSNP
rs1318607573 1211 dbSNP
rs1257503331 1213 dbSNP
rs1479623483 1216 dbSNP
rs1039332759 1241 dbSNP
rs1252440130 1254 dbSNP
rs1059884 1257 dbSNP
rs7497657 1274 dbSNP
rs1177983305 1275 dbSNP
rs1432778410 1280 dbSNP
rs1481011449 1282 dbSNP
rs191828178 1289 dbSNP
rs1177273700 1290 dbSNP
rs1423621534 1291 dbSNP
rs942477718 1293 dbSNP
rs1168586995 1300 dbSNP
rs552951969 1308 dbSNP
rs1185121281 1328 dbSNP
rs1476617146 1332 dbSNP
rs534932665 1337 dbSNP
rs1043318076 1338 dbSNP
rs1243087188 1343 dbSNP
rs1303137759 1343 dbSNP
rs1305615117 1357 dbSNP
rs1227373872 1360 dbSNP
rs945911534 1369 dbSNP
rs567095243 1372 dbSNP
rs1059885 1374 dbSNP
rs1265014928 1387 dbSNP
rs1266800339 1392 dbSNP
rs1488287508 1394 dbSNP
rs913020369 1394 dbSNP
rs1324165953 1403 dbSNP
rs992759966 1409 dbSNP
rs772182533 1412 dbSNP
rs376278682 1415 dbSNP
rs36106641 1420 dbSNP
rs1161160008 1421 dbSNP
rs4041349 1421 dbSNP
rs188540036 1429 dbSNP
rs1380127288 1436 dbSNP
rs927305764 1438 dbSNP
rs1294979835 1439 dbSNP
rs57021600 1440 dbSNP
rs1298011291 1446 dbSNP
rs1367292863 1446 dbSNP
rs963835001 1447 dbSNP
rs182917448 1450 dbSNP
rs574800494 1451 dbSNP
rs1354433750 1470 dbSNP
rs1222381240 1472 dbSNP
rs1168905019 1473 dbSNP
rs190713605 1474 dbSNP
rs1420601119 1478 dbSNP
rs950916012 1482 dbSNP
rs1030887829 1483 dbSNP
rs1182358696 1492 dbSNP
rs1059887 1496 dbSNP
rs1423933956 1497 dbSNP
rs561453567 1503 dbSNP
rs1184260401 1504 dbSNP
rs1166250751 1506 dbSNP
rs1343104214 1509 dbSNP
rs774068049 1512 dbSNP
rs1059888 1513 dbSNP
rs1249719184 1518 dbSNP
rs1202294285 1521 dbSNP
rs1283583984 1524 dbSNP
rs1450180596 1524 dbSNP
rs1059890 1531 dbSNP
rs1229006544 1535 dbSNP
rs1309198027 1540 dbSNP
rs147067208 1546 dbSNP
rs1208287932 1548 dbSNP
rs1268999403 1557 dbSNP
rs773919222 1560 dbSNP
rs115263952 1563 dbSNP
rs1059892 1564 dbSNP
rs1059893 1571 dbSNP
rs1006505340 1573 dbSNP
rs1452956777 1574 dbSNP
rs1371924549 1577 dbSNP
rs1295963649 1584 dbSNP
rs1183119024 1585 dbSNP
rs904154618 1587 dbSNP
rs545098791 1600 dbSNP
rs1472062478 1604 dbSNP
rs1042816837 1606 dbSNP
rs945765508 1607 dbSNP
rs139226368 1614 dbSNP
rs1333225369 1618 dbSNP
rs1359708745 1621 dbSNP
rs1163331024 1622 dbSNP
rs1423182172 1623 dbSNP
rs1056971003 1627 dbSNP
rs1227844381 1633 dbSNP
rs1387277377 1634 dbSNP
rs938601641 1634 dbSNP
rs927191112 1635 dbSNP
rs1217864322 1636 dbSNP
rs1278299110 1643 dbSNP
rs980132084 1646 dbSNP
rs942048696 1657 dbSNP
rs909165807 1662 dbSNP
rs1182243574 1664 dbSNP
rs1253578388 1665 dbSNP
rs552955069 1669 dbSNP
rs1171808517 1675 dbSNP
rs1425541655 1677 dbSNP
rs1233443428 1679 dbSNP
rs950848915 1685 dbSNP
rs1369846465 1689 dbSNP
rs923465240 1699 dbSNP
rs34404542 1701 dbSNP
rs36006600 1705 dbSNP
rs1246188346 1706 dbSNP
rs1315974231 1708 dbSNP
rs1059895 1709 dbSNP
rs1221283707 1715 dbSNP
rs1273167858 1717 dbSNP
rs866644958 1718 dbSNP
rs1225032581 1726 dbSNP
rs1276096213 1729 dbSNP
rs1197642766 1739 dbSNP
rs976220365 1743 dbSNP
rs1374657984 1744 dbSNP
rs1186404622 1747 dbSNP
rs1303118825 1749 dbSNP
rs34852578 1752 dbSNP
rs58570864 1754 dbSNP
rs1430272571 1756 dbSNP
rs569834814 1764 dbSNP
rs1307022058 1765 dbSNP
rs1403671712 1766 dbSNP
rs576052364 1778 dbSNP
rs1017821909 1779 dbSNP
rs1304144457 1781 dbSNP
rs550754747 1794 dbSNP
rs1001487691 1795 dbSNP
rs968434648 1796 dbSNP
rs1229720857 1797 dbSNP
rs1299187492 1805 dbSNP
rs867637854 1821 dbSNP
rs1419789111 1822 dbSNP
rs1010014874 1832 dbSNP
rs1206612283 1837 dbSNP
rs11558446 1844 dbSNP
rs1198540687 1849 dbSNP
rs7173351 1850 dbSNP
rs547007735 1851 dbSNP
rs1391765936 1857 dbSNP
rs1057027234 1862 dbSNP
rs1318981824 1863 dbSNP
rs1223038471 1864 dbSNP
rs1002698661 1865 dbSNP
rs1300525543 1869 dbSNP
rs528787727 1870 dbSNP
rs1339192211 1872 dbSNP
rs1258642997 1873 dbSNP
rs1358042306 1876 dbSNP
rs1226117020 1886 dbSNP
rs1240521286 1888 dbSNP
rs905660059 1891 dbSNP
rs1044337690 1893 dbSNP
rs561616063 1896 dbSNP
rs941918436 1898 dbSNP
rs909243160 1899 dbSNP
rs1186963077 1903 dbSNP
rs369101372 1905 dbSNP
rs549703036 1907 dbSNP
rs1157306956 1909 dbSNP
rs1411496404 1912 dbSNP
rs531087270 1920 dbSNP
rs746293709 1922 dbSNP
rs1290954889 1925 dbSNP
rs1400716995 1932 dbSNP
rs929447553 1936 dbSNP
rs1334249438 1942 dbSNP
rs1356886939 1949 dbSNP
rs1407439239 1950 dbSNP
rs1284319107 1957 dbSNP
rs1329385792 1973 dbSNP
rs1253977988 1974 dbSNP
rs1344237793 1976 dbSNP
rs1382072254 1998 dbSNP
rs186362389 2009 dbSNP
rs544749407 2011 dbSNP
rs976105906 2012 dbSNP
rs1251396356 2031 dbSNP
rs1473011415 2035 dbSNP
rs879649262 2037 dbSNP
rs1376214191 2038 dbSNP
rs1465850775 2055 dbSNP
rs776269741 2055 dbSNP
rs1454523379 2062 dbSNP
rs1377774513 2063 dbSNP
rs577696003 2064 dbSNP
rs3200769 2068 dbSNP
rs1350753837 2074 dbSNP
rs979724263 2077 dbSNP
rs770420724 2081 dbSNP
rs1431437274 2099 dbSNP
rs1257743644 2102 dbSNP
rs760232507 2104 dbSNP
rs1339922503 2105 dbSNP
rs1021312047 2116 dbSNP
rs1273934500 2121 dbSNP
rs955806517 2124 dbSNP
rs1035446023 2138 dbSNP
rs1433016577 2154 dbSNP
rs1002584119 2159 dbSNP
rs1397462294 2163 dbSNP
rs1428328509 2165 dbSNP
rs1167430838 2167 dbSNP
rs1370565953 2168 dbSNP
rs1463066906 2171 dbSNP
rs540665900 2171 dbSNP
rs757829190 2181 dbSNP
rs1389543955 2182 dbSNP
rs1259433378 2185 dbSNP
rs1206474393 2203 dbSNP
rs1387180333 2221 dbSNP
rs1305289916 2223 dbSNP
rs1465076075 2229 dbSNP
rs1227485433 2230 dbSNP
rs1044594127 2231 dbSNP
rs180726199 2232 dbSNP
rs1201300814 2236 dbSNP
rs1263941704 2238 dbSNP
rs887689465 2245 dbSNP
rs752067224 2249 dbSNP
rs555194206 2254 dbSNP
rs1047757908 2255 dbSNP
rs113961560 2261 dbSNP
rs929307729 2273 dbSNP
rs757121967 2276 dbSNP
rs1040456718 2285 dbSNP
rs923237671 2285 dbSNP
rs943431190 2303 dbSNP
rs576120195 2307 dbSNP
rs1348961107 2316 dbSNP
rs1382926449 2317 dbSNP
rs1327671266 2318 dbSNP
rs1386267306 2320 dbSNP
rs3538 2326 dbSNP
rs1321193820 2327 dbSNP
rs139884939 2329 dbSNP
rs1440686336 2333 dbSNP
rs774897292 2334 dbSNP
rs1471027545 2337 dbSNP
rs1310604406 2342 dbSNP
rs1321366683 2344 dbSNP
rs1408173782 2346 dbSNP
rs1234060495 2347 dbSNP
rs1173045594 2354 dbSNP
rs1463869973 2368 dbSNP
rs377071928 2380 dbSNP
rs571754470 2381 dbSNP
rs965601716 2382 dbSNP
rs988374762 2382 dbSNP
rs79982878 2392 dbSNP
rs1449692582 2397 dbSNP
rs868179846 2407 dbSNP
rs1423881622 2408 dbSNP
rs1166715566 2409 dbSNP
rs1409282112 2410 dbSNP
rs1242208864 2416 dbSNP
rs190924286 2418 dbSNP
rs1346918070 2430 dbSNP
rs981201915 2433 dbSNP
rs534970822 2444 dbSNP
rs1301172963 2445 dbSNP
rs567674146 2449 dbSNP
rs1415464508 2455 dbSNP
rs1278739700 2457 dbSNP
rs969777190 2469 dbSNP
rs1022836819 2479 dbSNP
rs542551792 2480 dbSNP
rs1208720719 2484 dbSNP
rs1253445151 2486 dbSNP
rs1485739746 2504 dbSNP
rs370434808 2506 dbSNP
rs1249205340 2507 dbSNP
rs1358974610 2507 dbSNP
rs1313245951 2509 dbSNP
rs1472032365 2511 dbSNP
rs115895898 2512 dbSNP
rs1026653636 2514 dbSNP
rs1412542086 2515 dbSNP
rs1175349029 2517 dbSNP
rs1328284133 2519 dbSNP
rs1390679878 2521 dbSNP
rs1435466978 2521 dbSNP
rs901866489 2522 dbSNP
rs993354106 2522 dbSNP
rs1040342944 2525 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 440270.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000342314.5 | 3UTR | UCAGGGACAUAUUUUGUGCAAUAUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000342314.5 | 3UTR | UCAGGGACAUAUUUUGUGCAAUAUUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000342314.5 | 3UTR | UCAGGGACAUAUUUUGUGCAAUAUUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000342314.5 | 3UTR | UCAGGGACAUAUUUUGUGCAAUAUUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC 0.732 0.01 0.691 0.01 11 Click to see details
HNSC -0.289 0.1 -0.319 0.07 22 Click to see details
STAD 0.375 0.11 0.371 0.12 12 Click to see details
THCA -0.154 0.16 -0.209 0.09 43 Click to see details
LUSC -0.212 0.17 -0.174 0.22 22 Click to see details
BRCA -0.169 0.19 -0.211 0.13 30 Click to see details
LIHC 0.194 0.19 0.168 0.22 23 Click to see details
KICH -0.226 0.22 -0.218 0.23 14 Click to see details
CHOL 0.729 0.24 0.500 0.33 3 Click to see details
PAAD 0.723 0.24 0.500 0.33 3 Click to see details
UCEC -0.11 0.35 -0.160 0.29 14 Click to see details
PRAD 0.093 0.38 0.064 0.41 14 Click to see details
KIRP 0.075 0.39 0.094 0.36 16 Click to see details
ESCA 0.232 0.43 0.500 0.33 3 Click to see details
ESCA 0.232 0.43 0.500 0.33 3 Click to see details
ESCA 0.232 0.43 0.500 0.33 3 Click to see details
ESCA 0.232 0.43 0.500 0.33 3 Click to see details
BLCA -1 0.5 -1.000 0.5 3 Click to see details
84 hsa-miR-3136-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081899 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT185493 SRP9 signal recognition particle 9 2 2
MIRT207226 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT246179 TXNIP thioredoxin interacting protein 2 4
MIRT347685 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT444157 ZNF701 zinc finger protein 701 2 2
MIRT444505 ZNF525 zinc finger protein 525 2 2
MIRT444683 NDOR1 NADPH dependent diflavin oxidoreductase 1 2 2
MIRT445131 CMTM4 CKLF like MARVEL transmembrane domain containing 4 2 2
MIRT446184 FGF1 fibroblast growth factor 1 2 2
MIRT447946 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449366 ANTXR2 anthrax toxin receptor 2 2 2
MIRT449774 SULF2 sulfatase 2 2 2
MIRT450096 ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 2 2
MIRT450903 CADM2 cell adhesion molecule 2 2 4
MIRT455645 YARS tyrosyl-tRNA synthetase 2 2
MIRT465135 TSC22D2 TSC22 domain family member 2 2 2
MIRT476177 GOLGA8A golgin A8 family member A 2 8
MIRT483978 PANK1 pantothenate kinase 1 2 10
MIRT497016 INO80B INO80 complex subunit B 2 2
MIRT497450 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT497626 ZNF576 zinc finger protein 576 2 2
MIRT498187 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT504036 TOMM5 translocase of outer mitochondrial membrane 5 2 2
MIRT507106 GOLGA8B golgin A8 family member B 2 4
MIRT507900 CALM2 calmodulin 2 2 6
MIRT508802 MTPN myotrophin 2 6
MIRT510407 ZNF268 zinc finger protein 268 2 4
MIRT516297 F8A2 coagulation factor VIII associated 2 2 2
MIRT516323 F8A3 coagulation factor VIII associated 3 2 2
MIRT528028 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529396 ICK intestinal cell kinase 2 2
MIRT534463 SCD stearoyl-CoA desaturase 2 4
MIRT535438 PDE4D phosphodiesterase 4D 2 2
MIRT538187 DBN1 drebrin 1 2 2
MIRT547386 MOB1A MOB kinase activator 1A 2 2
MIRT548180 FOXC1 forkhead box C1 2 2
MIRT561585 SKI SKI proto-oncogene 2 2
MIRT569449 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT573314 RFC5 replication factor C subunit 5 2 2
MIRT574762 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT575975 Fem1a feminization 1 homolog a (C. elegans) 2 5
MIRT575999 Zfp106 zinc finger protein 106 1 1
MIRT576277 Cd59a CD59a antigen 1 1
MIRT606772 KIAA0040 KIAA0040 2 5
MIRT606833 FEM1A fem-1 homolog A 2 7
MIRT608302 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT609269 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT609405 SLC25A45 solute carrier family 25 member 45 2 2
MIRT609603 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT610105 IL17REL interleukin 17 receptor E like 2 3
MIRT610327 SSX5 SSX family member 5 2 2
MIRT610610 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT611066 ZNF621 zinc finger protein 621 2 2
MIRT611492 ZNF440 zinc finger protein 440 2 2
MIRT611931 ZNF106 zinc finger protein 106 2 3
MIRT612239 MICALL1 MICAL like 1 2 2
MIRT612451 SMOC1 SPARC related modular calcium binding 1 2 4
MIRT612567 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit 2 2
MIRT613111 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT614946 KAT6B lysine acetyltransferase 6B 2 2
MIRT615100 BNC2 basonuclin 2 2 2
MIRT616424 FAM126B family with sequence similarity 126 member B 2 2
MIRT617839 FMO4 flavin containing monooxygenase 4 2 2
MIRT618499 HSPD1 heat shock protein family D (Hsp60) member 1 2 2
MIRT619230 FBXL4 F-box and leucine rich repeat protein 4 2 2
MIRT624202 DCP2 decapping mRNA 2 2 4
MIRT630405 MTX3 metaxin 3 2 2
MIRT640327 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT642779 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT654363 RBM23 RNA binding motif protein 23 2 2
MIRT654482 RANBP2 RAN binding protein 2 2 2
MIRT656336 MED28 mediator complex subunit 28 2 2
MIRT662856 UPF3A UPF3A, regulator of nonsense mediated mRNA decay 2 2
MIRT666894 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT669526 AP5M1 adaptor related protein complex 5 mu 1 subunit 2 2
MIRT671561 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT707042 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT717063 MTMR6 myotubularin related protein 6 2 2
MIRT717223 SH2D5 SH2 domain containing 5 2 2
MIRT719867 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
MIRT719967 RBX1 ring-box 1 2 2
MIRT723594 FKRP fukutin related protein 2 2
MIRT725081 VCPIP1 valosin containing protein interacting protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3136-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3136-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3136-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM17)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM11)
hsa-miR-3136-5p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-3136-5p Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-3136-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3136-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)

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