pre-miRNA Information
pre-miRNA hsa-mir-367   
Genomic Coordinates chr4: 112647874 - 112647941
Synonyms MIRN367, hsa-mir-367, MIR367
Description Homo sapiens miR-367 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-367-3p
Sequence 44| AAUUGCACUUUAGCAAUGGUGA |65
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN24411246 17 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs535597757 1 dbSNP
rs1013348949 11 dbSNP
rs896333735 12 dbSNP
rs751269136 14 dbSNP
rs1163501507 16 dbSNP
rs757092597 21 dbSNP
Putative Targets

Gene Information
Gene Symbol FAM129A   
Synonyms C1orf24, GIG39, NIBAN
Description family with sequence similarity 129 member A
Transcript NM_052966   
Expression
Putative miRNA Targets on FAM129A
3'UTR of FAM129A
(miRNA target sites are highlighted)
>FAM129A|NM_052966|3'UTR
   1 AAGGGACAATTTGGCTGAAGTCTTTCTCTGAAAAAAGCCAAAGGGTTATAGGGGTACACTTAGGGGTTGCATGCAAGCTG
  81 TTACCAAAAAATTTTTAAGTATTTTCTTAATTTGAATAATAAAACCAGAGGAAATGCATACAGGGCATGAGCAACTGAGG
 161 CAAACCTTTGTGGACATGAATTGTTCTACGATGAATTTTTGCTTTAGTATTTTAATAAGAATTACAAAGACAATGGCATA
 241 CTTGGGGTGAGAGGGAGCTGAGGATGTCTGAGGAGGGAATAGTATTGCAGGGAAGACTGAGAAAACAGTAGGATGACAGT
 321 TTTGAGTATACTCTGCACTTTTCAATTGTGCAATCTTCTTGTGCACTTTAAGGCTTTTTAATTTTGTTTGAGAATGCAAA
 401 TGTATACTGTAAGTCTACCTTTACTATCTACTATGCCTACTTCACCATCTCTTAAGGACTCGGCATTTGTCCACAGTCAG
 481 ACTGCAAGAGAGGGTAGGTCATGAACAGTCACCCGTGCTGGCTGTAGCCCCCACAGAGGCAATCATGCCCAATAGATTCA
 561 AGAGAAGCTAAGCGGAAATGGAGGGTGGAAGGTGTGATCTGTGGGACTGTCTGGGCCTGTTACTCATCCTGCTATCAATT
 641 TCTTATTAATTAATCTTGATGATTCTTATTAATTAATCACATTTGCAGGAAATTCAGATGAGGCAAGAAAATTTTATTGG
 721 CCTGGGTAAGACTGAAAGCATTCCAAATTAGGCTTAGACTGTGCAAAGGGCTTAGCTAAGTTATCGAGCTTAAAACCCGT
 801 CAATTAAACAAACATTATTTGAACAGTTACTGCATGCCACGCACTGTGTTGGGCTTAGTAATAAAAAAAAGAAAAGATAA
 881 GTGCTTGTTCTAGCATAAATTAAAAGGTCCAAGGGAATTTAATCTGGAAGAGAACATATGCCAATTTTTAAACTATGACA
 961 GCTTTTTTTTTTCTCTTTCCATTCAAATAGTCCTGGTTCATTCCCAGAAGGGCACAAAATGAATGAATAAATAAATAAAT
1041 GAATAAAGACAAAAGCCAAGGTGTATGCTCTCAAGTTCCAAAGATGTTATCAAAAGCTGAAATCATTTGTTTGGTCATTC
1121 AGCAAGCTAATTGAGTCTCTGTTATATACCAAGCACTGGGGATACCATGGCGAAAAACAACTTTGTTCCTTCCTCCTAGA
1201 ACTTACATTTTAATGGAAATAGACAAAACACATCTTCTTAACGGATGGTGACCTATAACCATTAATGTTGAAAATGGAAG
1281 AGACTTGCTTCCAAAAGATTAAAAGGAGTTGTTCTTTTCTCCTTCAGAAAAATACCAGATCATTTCCTAAAATCTCCAGT
1361 CCCAAGTATTACATCGTGGTTTCCCTCCCCGACTTTTTATTTTATTTTATTCTATTTTTTTGAGATGGAGTCTCACTCTG
1441 TCGCCAAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAGGAGATTCTCCTCTGTC
1521 AGCGTCCCAAGTAGCTGGAATTACAGCCATGCGGCACCATTCCCGGCTAATTTTTGTATTTTTGGTAGAGATGGGTTTTC
1601 ACCATGTTGGCCAGGCTGGTCTCAAACTCCTGATTTCAAGCGATCCACCCACCTCGACTTCCCAAAGTGCTGGGATTACA
1681 GCGTGAGCTACCTGGCCCCTCCCCAAATTTTAACATCAGATCTCAACATATTTGTTGAGAACTTGTTTAGATCATCACTA
1761 TCGAGTAAATTTATGTCAGTTCTTTAGAGCATTTGCTTCACACACAGTTCAACCATTTAACCAGAAATTAAAATATCACC
1841 CTTTTCAGCCCTCCCATGAAGAATTTCTAGGTCATAAACATGAATAATACTCAGTATATGTATAATATCATATTTAATTG
1921 TTGCAACTTTTCTTGGCGTGTTTAAATCCTCATGTCTTTGAGGGATCCCACCACAGGTGAAGGAAGTAAAGACCACTTCT
2001 CCCCCAGTCTCTGCTTTCTGCAGTGCTCACTCATATCCTGGCATTTAGCATGGTGTGTTGAAATTAGGTTTACTTCTTGT
2081 CTCTCCAAGTGGCTCCTCTCTTAAAAGACAGAAACTAGGGTTTAGTCATCATTTGTGCTTCCTGCTAGAAACCCACAGCC
2161 TTGAATAATGGCTTCCTGCCTCCTTGAGTCACTTTAATATCCCTGGTGCATAGGACCTGGCATGCGTCAGGCTGCTCGGG
2241 AAATGTGGGAACTGGACACCCAGAACACTGCTGTGCTGGGGCTATTTGGGGCCTGCTGTCAGGCAGAAAGACGTTTTGAA
2321 TTGGGCTTTCTGCCCTTGTTGAGTTTTCTCTTAAGTAAAGTCCAAAGTCCAAGGGGCAGATGGCCAGATGCACTGCCCAG
2401 TAAGGCAGGAAGCCAAAGAGGCAGTGCCCAGCCCCACAAAGGCTGCCCGACTCCCTGGGACAGTAGTGTGGAGTCCCAGC
2481 CCAGGCTGACCTCACACCGGAGCTTCCTAGCTTCCTTTCTTTGCTCAATGCAGGGCTTCTTGCACCCCCTGGAAAGCTAA
2561 GAGATTTTTTTCAACCCTAAAAGAGAGTACCTTTCACTGCATTGGATGGATGAACATCAGTGCCCTAACTTTATCCATCA
2641 TGTAGGTCAGGGAGGACTGGGCACTATTTGGCAGGATGTACTCCAGAATATAATCAAAGAATTTTCTGTACATATTTCAC
2721 TAAAGACAAGTTTTTGGGCTGGATGTGGTAGCTTACACCTATAATCCCAGCACTTTGGGAGGCTGAGGTGAGAGGGTCAC
2801 TTGAGCCCAGGAGTTCTAGACAAGCCTGGGAAACATAGCAAGATCTCATCCTTACAAAAAATAATAATGGTGTGTGCCTG
2881 CAGTCCTAGCTACTTGGGTGGTTGAGGCAGGAGGATTGTTTGAGCGAGGGAAGTTGAGGCTGCAGTGAACTATGATTTTA
2961 CCACTGCACTCCAGCTTGGGCAACAAAATGAGACCCTGTCTCAAAAAAAAAAAAAAAGTTTTCTAGAATAAGCAGGATGA
3041 TTGTTTAATTTGAAGATGGAACAGGAAACTAGAGTGCATTTAAAATACTCTGTCTTCATTTTAACATGTTGAATGGAATA
3121 ACTGCATATCACCATGAGTTTGTTTTGCTTTTCATACAGACTTGTATGTGTCATTTGAGTGGTTTCCAGATTGGAGCGAG
3201 GTTATTCTGATCTAAATGAACAGCATTTTTTTCCTTAGCCTCTGTTTGCCACTCTGGGTATCTCTCCTATGGGCAAAGCC
3281 ATTAGAAATGCATAAAACCTCGAGACATGGTTTTTGGCAAAAACTCCATGACTTTAAACTAGCTCTTTTACTACTGACCT
3361 TTCACAGAGAAAAAATATTTCCCTTGAAAAAAACTGGGCTTGTCATTTTTTCCCTTGTAGCTTTAAGCAGAGACATAAGT
3441 GCCTTGCATTACACATAGTAAACTTTCTTTAAAAAAAAAAAAAAAAGATTTTGGAGACTACCAGGGTAAGATTCCAACTT
3521 GTCCAAAAGCTTTCTGGCCTTACATATTTTATTATAAAAATTCTCAAGTCTGGTAATCTTCTATGTCAGAGCTAGTGATT
3601 TCAAAAGGTTTCACAATTCCCCAAGACAAAAGTGATTTTCGTTCATTATAATAAGGTTAAGTGATATGTGATTCATAGCA
3681 ATTTTGATGTGAAGAAGGGAAGGACATCATTGACTTAATAATAGTATCAGTCGGTGCAACAGTTGGCAACATGTGCCTTC
3761 ACACTTTACCATAAAGAGACGGGTTTGAGGGTTTGCCTTCTAAAGTCTGCAACTTCAAGAAAAAAAATCGACACTGTGGA
3841 TTGACTTTCCCGGTCACTATATAAAGCAAATAAACTTAAAACACTTTGTAACCATGTATTTACTCTGCCAGGTGCCTATA
3921 TTCCAATAAAATGTTCATCCTTGAAGAGCTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agUGGUAACGAUUUCACGUUAa 5'
            :|||  |||::||||||:| 
Target 5' tcGCCAAGGCTGGAGTGCAGTg 3'
1441 - 1462 156.00 -25.70
2
miRNA  3' agugGUAACGAUUU--CACGUUAa 5'
              || | :| ||  ||||||| 
Target 5' tctgCACTTTTCAATTGTGCAATc 3'
332 - 355 152.00 -10.03
3
miRNA  3' aguggUAA--CG-AUUU--CACGUUaa 5'
               |||  || ||:|  ||||||  
Target 5' tccaaATTAGGCTTAGACTGTGCAAag 3'
742 - 768 133.00 -8.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30724904 9 COSMIC
COSN30493830 11 COSMIC
COSN30189539 13 COSMIC
COSN31509171 14 COSMIC
COSN30449382 15 COSMIC
COSN30105265 20 COSMIC
COSN30177628 22 COSMIC
COSN26975670 30 COSMIC
COSN6432035 44 COSMIC
COSN30178324 48 COSMIC
COSN30184840 56 COSMIC
COSN30170233 77 COSMIC
COSN30479622 85 COSMIC
COSN31556253 85 COSMIC
COSN18724106 92 COSMIC
COSN31599637 93 COSMIC
COSN31502525 101 COSMIC
COSN31508957 119 COSMIC
COSN24386558 191 COSMIC
COSN8410545 193 COSMIC
COSN20963652 210 COSMIC
COSN23856229 331 COSMIC
COSN20728959 395 COSMIC
COSN6432034 586 COSMIC
COSN23559713 743 COSMIC
COSN29007882 962 COSMIC
COSN7188492 1029 COSMIC
COSN6011780 1061 COSMIC
COSN19094579 1133 COSMIC
COSN31959487 1424 COSMIC
COSN6432033 1508 COSMIC
COSN17038070 1600 COSMIC
COSN22108177 1621 COSMIC
COSN21885834 1742 COSMIC
COSN16486472 2180 COSMIC
COSN8410544 2198 COSMIC
COSN26710942 2330 COSMIC
COSN30169945 2341 COSMIC
COSN26583496 2395 COSMIC
COSN21318217 2418 COSMIC
COSN23455972 2464 COSMIC
COSN16653662 2476 COSMIC
COSN31513306 2498 COSMIC
COSN31482156 2567 COSMIC
COSN23700213 2610 COSMIC
COSN6432032 2746 COSMIC
COSN6432031 2925 COSMIC
COSN20095677 3003 COSMIC
COSN20095678 3003 COSMIC
COSN1093993 3226 COSMIC
COSN25753231 3458 COSMIC
COSN20095671 3471 COSMIC
COSN20095676 3471 COSMIC
COSN6432030 3678 COSMIC
COSN1093992 3732 COSMIC
COSN7188491 3806 COSMIC
COSN13499902 3829 COSMIC
COSN31549708 3829 COSMIC
COSN30161515 3843 COSMIC
COSN31479560 3875 COSMIC
rs682331 2746 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171248838 3 dbSNP
rs964715783 4 dbSNP
rs745504120 8 dbSNP
rs1300608502 13 dbSNP
rs1387283607 16 dbSNP
rs1414497232 18 dbSNP
rs780813890 20 dbSNP
rs1296182042 21 dbSNP
rs1335487439 24 dbSNP
rs1399144788 29 dbSNP
rs998422325 31 dbSNP
rs533572766 33 dbSNP
rs1290294343 34 dbSNP
rs1297305637 37 dbSNP
rs764346728 37 dbSNP
rs1016289160 40 dbSNP
rs746463405 42 dbSNP
rs1031835914 43 dbSNP
rs581100 44 dbSNP
rs114166873 45 dbSNP
rs1201066643 46 dbSNP
rs760875025 46 dbSNP
rs752533391 47 dbSNP
rs778644455 53 dbSNP
rs1187758743 58 dbSNP
rs756391161 58 dbSNP
rs1233273488 59 dbSNP
rs750594262 61 dbSNP
rs1207135057 64 dbSNP
rs187207918 71 dbSNP
rs1255558220 72 dbSNP
rs761801566 74 dbSNP
rs1325647859 80 dbSNP
rs562093000 81 dbSNP
rs183355726 84 dbSNP
rs1340917693 99 dbSNP
rs947728094 100 dbSNP
rs1022918456 111 dbSNP
rs79046430 112 dbSNP
rs776065720 125 dbSNP
rs1401046632 128 dbSNP
rs770271251 130 dbSNP
rs1470657015 131 dbSNP
rs1437662928 136 dbSNP
rs759889645 138 dbSNP
rs776155351 139 dbSNP
rs1330672283 141 dbSNP
rs770581321 144 dbSNP
rs201127933 155 dbSNP
rs1276672692 156 dbSNP
rs140082685 160 dbSNP
rs192359107 165 dbSNP
rs918456617 166 dbSNP
rs1350692739 171 dbSNP
rs1289684452 176 dbSNP
rs1054186154 178 dbSNP
rs1344457895 179 dbSNP
rs934373927 180 dbSNP
rs902947984 185 dbSNP
rs1437590044 186 dbSNP
rs1361525596 188 dbSNP
rs146104555 189 dbSNP
rs1157487924 190 dbSNP
rs552614050 191 dbSNP
rs985541070 193 dbSNP
rs954211117 197 dbSNP
rs749256787 199 dbSNP
rs1413435782 205 dbSNP
rs975052278 224 dbSNP
rs1325672603 229 dbSNP
rs1334082817 233 dbSNP
rs1227823071 243 dbSNP
rs1161446393 247 dbSNP
rs762714369 265 dbSNP
rs1331061313 267 dbSNP
rs1231287624 268 dbSNP
rs943356120 273 dbSNP
rs1029658096 280 dbSNP
rs1488626906 281 dbSNP
rs909194427 282 dbSNP
rs1479526407 283 dbSNP
rs1211240147 284 dbSNP
rs80157762 285 dbSNP
rs1200459540 294 dbSNP
rs950770514 299 dbSNP
rs956273612 306 dbSNP
rs1026404248 310 dbSNP
rs1182184616 319 dbSNP
rs1253177547 326 dbSNP
rs1031889766 327 dbSNP
rs981681598 329 dbSNP
rs1368235625 330 dbSNP
rs949116775 333 dbSNP
rs1240155981 336 dbSNP
rs1165255659 340 dbSNP
rs1368880286 343 dbSNP
rs1409302843 343 dbSNP
rs971287350 345 dbSNP
rs1352335873 352 dbSNP
rs1023289309 353 dbSNP
rs1011984670 354 dbSNP
rs1269998466 355 dbSNP
rs894848584 361 dbSNP
rs188713765 362 dbSNP
rs1246664603 363 dbSNP
rs768737282 374 dbSNP
rs1032648985 395 dbSNP
rs1205318979 396 dbSNP
rs1036879608 401 dbSNP
rs1484344420 405 dbSNP
rs1180651910 411 dbSNP
rs1256024483 414 dbSNP
rs1424767398 421 dbSNP
rs941210665 430 dbSNP
rs1189986530 449 dbSNP
rs554689854 451 dbSNP
rs113866673 461 dbSNP
rs190747649 462 dbSNP
rs1372461971 467 dbSNP
rs1464565195 469 dbSNP
rs144084841 473 dbSNP
rs998080632 474 dbSNP
rs1397575871 481 dbSNP
rs1295106996 490 dbSNP
rs902034006 492 dbSNP
rs1228640827 493 dbSNP
rs1430536649 498 dbSNP
rs531217222 502 dbSNP
rs551812079 506 dbSNP
rs943596566 512 dbSNP
rs1255938984 513 dbSNP
rs1323189155 514 dbSNP
rs14023 515 dbSNP
rs1202620183 521 dbSNP
rs1049013925 524 dbSNP
rs1405466518 527 dbSNP
rs1449148134 528 dbSNP
rs1189478419 531 dbSNP
rs1392212819 536 dbSNP
rs1431515169 541 dbSNP
rs924874214 542 dbSNP
rs760806595 547 dbSNP
rs1467515716 549 dbSNP
rs773367822 552 dbSNP
rs559971257 553 dbSNP
rs1387605409 559 dbSNP
rs1435497069 561 dbSNP
rs981576377 566 dbSNP
rs542123021 574 dbSNP
rs14426 586 dbSNP
rs529403871 587 dbSNP
rs1313339072 590 dbSNP
rs1034695358 592 dbSNP
rs1185697016 601 dbSNP
rs562083391 603 dbSNP
rs186600786 604 dbSNP
rs991332958 609 dbSNP
rs957240252 610 dbSNP
rs1263226830 616 dbSNP
rs576360604 622 dbSNP
rs1032931848 629 dbSNP
rs1305393965 632 dbSNP
rs1425917785 634 dbSNP
rs559363968 639 dbSNP
rs1049582218 640 dbSNP
rs967099436 642 dbSNP
rs182792042 652 dbSNP
rs1457588837 654 dbSNP
rs922691420 663 dbSNP
rs1041124119 664 dbSNP
rs1300385697 685 dbSNP
rs190729106 695 dbSNP
rs934670927 698 dbSNP
rs924591699 700 dbSNP
rs774812381 703 dbSNP
rs544916806 705 dbSNP
rs1287007825 714 dbSNP
rs1303494520 716 dbSNP
rs1229458691 723 dbSNP
rs916109611 725 dbSNP
rs899595448 726 dbSNP
rs1221078674 740 dbSNP
rs1247458441 750 dbSNP
rs1489510279 757 dbSNP
rs59757318 759 dbSNP
rs541126247 763 dbSNP
rs1472877403 774 dbSNP
rs888029079 777 dbSNP
rs1411332012 779 dbSNP
rs1034749208 782 dbSNP
rs1165081056 784 dbSNP
rs1404499266 784 dbSNP
rs552724775 785 dbSNP
rs929293426 786 dbSNP
rs780851460 793 dbSNP
rs1306858251 798 dbSNP
rs1350486628 814 dbSNP
rs1181609932 815 dbSNP
rs919285685 817 dbSNP
rs1003229983 827 dbSNP
rs1228065032 830 dbSNP
rs1290879217 836 dbSNP
rs1361849691 840 dbSNP
rs1046164424 841 dbSNP
rs1273971547 842 dbSNP
rs1483370040 848 dbSNP
rs1183934149 850 dbSNP
rs756892285 852 dbSNP
rs540871225 854 dbSNP
rs1472344667 863 dbSNP
rs961057782 868 dbSNP
rs1015251926 871 dbSNP
rs1005920999 878 dbSNP
rs1167455323 881 dbSNP
rs1370609868 887 dbSNP
rs1431050650 895 dbSNP
rs576955544 906 dbSNP
rs888375151 907 dbSNP
rs1339168273 908 dbSNP
rs573643259 909 dbSNP
rs555174554 914 dbSNP
rs915988513 916 dbSNP
rs996697427 919 dbSNP
rs900986719 920 dbSNP
rs1041177834 930 dbSNP
rs991280730 932 dbSNP
rs1197563616 933 dbSNP
rs957230419 937 dbSNP
rs537025200 941 dbSNP
rs925852510 951 dbSNP
rs569568665 954 dbSNP
rs1244319075 963 dbSNP
rs1441754378 972 dbSNP
rs1244713037 973 dbSNP
rs1447331838 973 dbSNP
rs934723255 973 dbSNP
rs903220092 974 dbSNP
rs1382679039 975 dbSNP
rs1314122492 979 dbSNP
rs1397824885 980 dbSNP
rs977360204 981 dbSNP
rs1043065187 992 dbSNP
rs1297771898 993 dbSNP
rs1400784638 995 dbSNP
rs1410674677 1013 dbSNP
rs947341723 1015 dbSNP
rs967718607 1017 dbSNP
rs1029303564 1029 dbSNP
rs1320150480 1032 dbSNP
rs557770072 1050 dbSNP
rs1423829746 1057 dbSNP
rs1368954655 1060 dbSNP
rs1229776553 1061 dbSNP
rs976833461 1070 dbSNP
rs746514198 1078 dbSNP
rs1477083226 1093 dbSNP
rs1416742247 1096 dbSNP
rs916177858 1101 dbSNP
rs1264872753 1105 dbSNP
rs1018020183 1109 dbSNP
rs1207806565 1114 dbSNP
rs1007676239 1117 dbSNP
rs754699139 1118 dbSNP
rs1248323386 1120 dbSNP
rs540116196 1125 dbSNP
rs993739496 1127 dbSNP
rs566424007 1131 dbSNP
rs1376552762 1134 dbSNP
rs548001991 1135 dbSNP
rs1266401851 1144 dbSNP
rs1177831508 1145 dbSNP
rs1432002505 1149 dbSNP
rs1455989466 1153 dbSNP
rs938877284 1157 dbSNP
rs1220689176 1166 dbSNP
rs1384101702 1167 dbSNP
rs538889784 1171 dbSNP
rs1266504642 1178 dbSNP
rs1247650390 1179 dbSNP
rs1285118382 1186 dbSNP
rs950096733 1189 dbSNP
rs1227634474 1190 dbSNP
rs1268494339 1203 dbSNP
rs1306383935 1207 dbSNP
rs981861627 1214 dbSNP
rs894560472 1232 dbSNP
rs1266183649 1240 dbSNP
rs1055922356 1242 dbSNP
rs935801952 1243 dbSNP
rs1301568061 1249 dbSNP
rs1471892493 1251 dbSNP
rs1158939851 1252 dbSNP
rs925753278 1253 dbSNP
rs1455625782 1255 dbSNP
rs1161710874 1259 dbSNP
rs1390202836 1261 dbSNP
rs983814640 1261 dbSNP
rs977266970 1266 dbSNP
rs1305029908 1269 dbSNP
rs1348602169 1275 dbSNP
rs1391219929 1278 dbSNP
rs1288856462 1280 dbSNP
rs139340090 1284 dbSNP
rs1242255649 1291 dbSNP
rs1264509828 1293 dbSNP
rs1356600801 1306 dbSNP
rs1451547670 1308 dbSNP
rs1028260069 1315 dbSNP
rs922515773 1324 dbSNP
rs1271818354 1357 dbSNP
rs996751530 1375 dbSNP
rs758037475 1376 dbSNP
rs964086245 1384 dbSNP
rs1421253734 1387 dbSNP
rs1017968412 1388 dbSNP
rs1368170734 1390 dbSNP
rs756820069 1391 dbSNP
rs983856549 1391 dbSNP
rs752456990 1393 dbSNP
rs1426733087 1399 dbSNP
rs752031254 1399 dbSNP
rs1198277528 1404 dbSNP
rs568492784 1404 dbSNP
rs1298687786 1407 dbSNP
rs550028218 1414 dbSNP
rs1394134826 1415 dbSNP
rs764954849 1418 dbSNP
rs1311736124 1419 dbSNP
rs1247684864 1422 dbSNP
rs1383121181 1422 dbSNP
rs371671165 1422 dbSNP
rs754916294 1427 dbSNP
rs1268509393 1430 dbSNP
rs753841709 1434 dbSNP
rs1025016522 1442 dbSNP
rs1014248329 1443 dbSNP
rs894508180 1444 dbSNP
rs1252418734 1447 dbSNP
rs1481897928 1453 dbSNP
rs531695647 1455 dbSNP
rs564304636 1463 dbSNP
rs998647838 1472 dbSNP
rs376957871 1477 dbSNP
rs1055821882 1484 dbSNP
rs533053490 1489 dbSNP
rs1445565868 1496 dbSNP
rs146262055 1500 dbSNP
rs1043505569 1505 dbSNP
rs540782969 1507 dbSNP
rs526024 1508 dbSNP
rs1331406548 1511 dbSNP
rs1406568460 1514 dbSNP
rs181552578 1520 dbSNP
rs112258670 1524 dbSNP
rs1363935519 1527 dbSNP
rs138354498 1533 dbSNP
rs1309836710 1545 dbSNP
rs1041392066 1548 dbSNP
rs928846946 1550 dbSNP
rs557783687 1552 dbSNP
rs539481629 1553 dbSNP
rs910862493 1557 dbSNP
rs1177671807 1564 dbSNP
rs777507841 1565 dbSNP
rs1175309103 1566 dbSNP
rs758792261 1577 dbSNP
rs952432322 1578 dbSNP
rs918340223 1579 dbSNP
rs1478153299 1584 dbSNP
rs940823216 1587 dbSNP
rs1379069310 1593 dbSNP
rs908301536 1595 dbSNP
rs1430985998 1599 dbSNP
rs1290220519 1600 dbSNP
rs111950921 1610 dbSNP
rs1385668722 1615 dbSNP
rs1427150960 1620 dbSNP
rs952440279 1632 dbSNP
rs1225812793 1637 dbSNP
rs1266595555 1639 dbSNP
rs375016468 1640 dbSNP
rs1024548153 1641 dbSNP
rs7520163 1642 dbSNP
rs1269591536 1653 dbSNP
rs752259132 1656 dbSNP
rs1179796528 1657 dbSNP
rs1410989214 1667 dbSNP
rs373875766 1682 dbSNP
rs998700467 1683 dbSNP
rs191159515 1685 dbSNP
rs1345957479 1687 dbSNP
rs1457025234 1689 dbSNP
rs1276877566 1699 dbSNP
rs1224922286 1703 dbSNP
rs1364231087 1706 dbSNP
rs75309930 1716 dbSNP
rs1042225819 1718 dbSNP
rs1286945993 1728 dbSNP
rs1012062143 1733 dbSNP
rs1379853996 1734 dbSNP
rs1286626344 1739 dbSNP
rs1010055905 1742 dbSNP
rs141649888 1746 dbSNP
rs1414593615 1749 dbSNP
rs1403866077 1751 dbSNP
rs570968962 1762 dbSNP
rs552141179 1763 dbSNP
rs527684891 1768 dbSNP
rs576206873 1775 dbSNP
rs1189703546 1782 dbSNP
rs1470398085 1782 dbSNP
rs1411271867 1789 dbSNP
rs1451878545 1790 dbSNP
rs558596034 1792 dbSNP
rs1241892334 1793 dbSNP
rs1422850513 1795 dbSNP
rs1186900909 1810 dbSNP
rs1436927706 1812 dbSNP
rs1036546342 1821 dbSNP
rs1443112997 1829 dbSNP
rs1366918508 1830 dbSNP
rs35199645 1834 dbSNP
rs1280946137 1837 dbSNP
rs757703704 1839 dbSNP
rs147470474 1846 dbSNP
rs1048011998 1849 dbSNP
rs1443456428 1853 dbSNP
rs1281634742 1854 dbSNP
rs931020365 1856 dbSNP
rs1377293081 1878 dbSNP
rs1245489213 1883 dbSNP
rs918335916 1889 dbSNP
rs1315949402 1890 dbSNP
rs138007089 1892 dbSNP
rs1357164284 1894 dbSNP
rs909355328 1898 dbSNP
rs1438324972 1904 dbSNP
rs1206419330 1908 dbSNP
rs1048175178 1914 dbSNP
rs1448075310 1917 dbSNP
rs931051816 1919 dbSNP
rs540946386 1923 dbSNP
rs1447140096 1925 dbSNP
rs962218624 1930 dbSNP
rs1167399593 1932 dbSNP
rs764058572 1937 dbSNP
rs16823470 1938 dbSNP
rs565669182 1940 dbSNP
rs1224698716 1948 dbSNP
rs1347906708 1960 dbSNP
rs958904186 1966 dbSNP
rs1432065642 1971 dbSNP
rs1034638836 1979 dbSNP
rs1000188227 1981 dbSNP
rs1337654184 1993 dbSNP
rs1385248655 1998 dbSNP
rs538016506 2006 dbSNP
rs968732992 2006 dbSNP
rs866247423 2017 dbSNP
rs1383891103 2022 dbSNP
rs561711548 2024 dbSNP
rs1020348149 2026 dbSNP
rs1021870688 2031 dbSNP
rs1276366441 2032 dbSNP
rs1163218243 2039 dbSNP
rs543648963 2043 dbSNP
rs1244653354 2050 dbSNP
rs901273152 2051 dbSNP
rs1191899803 2052 dbSNP
rs959046577 2057 dbSNP
rs766168429 2060 dbSNP
rs1006683178 2067 dbSNP
rs1002845393 2068 dbSNP
rs746540062 2083 dbSNP
rs187161681 2094 dbSNP
rs1179838404 2102 dbSNP
rs889698640 2103 dbSNP
rs907191476 2107 dbSNP
rs1433144883 2115 dbSNP
rs1317846756 2117 dbSNP
rs1327136763 2120 dbSNP
rs564181373 2126 dbSNP
rs1273018208 2130 dbSNP
rs1005536331 2138 dbSNP
rs1223960915 2143 dbSNP
rs1264736506 2145 dbSNP
rs758000283 2153 dbSNP
rs1204208160 2161 dbSNP
rs887989984 2165 dbSNP
rs1284438265 2166 dbSNP
rs1448237393 2167 dbSNP
rs146965249 2171 dbSNP
rs1267464641 2175 dbSNP
rs572092479 2175 dbSNP
rs1480380149 2180 dbSNP
rs932132856 2183 dbSNP
rs1288997592 2190 dbSNP
rs747770892 2196 dbSNP
rs1228837131 2223 dbSNP
rs1441926601 2225 dbSNP
rs1357773551 2226 dbSNP
rs1277265148 2237 dbSNP
rs896837968 2238 dbSNP
rs1402580938 2248 dbSNP
rs1036712921 2252 dbSNP
rs949121035 2262 dbSNP
rs921028234 2281 dbSNP
rs1309511730 2285 dbSNP
rs917676350 2291 dbSNP
rs1412016465 2293 dbSNP
rs992992650 2295 dbSNP
rs1352391063 2298 dbSNP
rs1323409967 2307 dbSNP
rs1207594968 2310 dbSNP
rs112105935 2312 dbSNP
rs1416671185 2313 dbSNP
rs927515843 2333 dbSNP
rs751303637 2334 dbSNP
rs1472329316 2346 dbSNP
rs919876946 2350 dbSNP
rs943707553 2357 dbSNP
rs1184641270 2360 dbSNP
rs547461740 2375 dbSNP
rs969013180 2379 dbSNP
rs977400849 2381 dbSNP
rs1471261997 2383 dbSNP
rs1161804808 2384 dbSNP
rs1020678305 2386 dbSNP
rs538713409 2409 dbSNP
rs1304895203 2415 dbSNP
rs575101892 2418 dbSNP
rs958505805 2421 dbSNP
rs1282121169 2424 dbSNP
rs1337215058 2433 dbSNP
rs1207516649 2446 dbSNP
rs1329270953 2448 dbSNP
rs965805994 2449 dbSNP
rs116051722 2451 dbSNP
rs1006671831 2453 dbSNP
rs889646207 2456 dbSNP
rs1479940338 2459 dbSNP
rs1195625000 2462 dbSNP
rs1251661567 2471 dbSNP
rs1002896250 2482 dbSNP
rs1274624621 2484 dbSNP
rs971401637 2485 dbSNP
rs1165543836 2489 dbSNP
rs538470418 2497 dbSNP
rs1026840925 2498 dbSNP
rs138488908 2499 dbSNP
rs897078490 2500 dbSNP
rs1319171007 2505 dbSNP
rs1398408804 2508 dbSNP
rs1456729799 2511 dbSNP
rs762676618 2514 dbSNP
rs1037065079 2528 dbSNP
rs1389486955 2531 dbSNP
rs949119067 2535 dbSNP
rs181040495 2536 dbSNP
rs1294725345 2539 dbSNP
rs996767219 2547 dbSNP
rs896216193 2548 dbSNP
rs1039500669 2549 dbSNP
rs1054908903 2559 dbSNP
rs1424798996 2561 dbSNP
rs1242837661 2563 dbSNP
rs1191536397 2564 dbSNP
rs1185553144 2570 dbSNP
rs146235632 2572 dbSNP
rs879205009 2575 dbSNP
rs1427954758 2578 dbSNP
rs552276228 2582 dbSNP
rs189001807 2583 dbSNP
rs1171070477 2586 dbSNP
rs116508827 2594 dbSNP
rs1468087348 2606 dbSNP
rs753611554 2610 dbSNP
rs1406408268 2616 dbSNP
rs1454223451 2620 dbSNP
rs143804759 2627 dbSNP
rs945698114 2640 dbSNP
rs1269483758 2655 dbSNP
rs1201302401 2656 dbSNP
rs1311235316 2658 dbSNP
rs914487422 2661 dbSNP
rs1278952370 2663 dbSNP
rs927420131 2672 dbSNP
rs1220139541 2677 dbSNP
rs1222110121 2682 dbSNP
rs1262886936 2683 dbSNP
rs1324656288 2699 dbSNP
rs990061552 2709 dbSNP
rs978936860 2711 dbSNP
rs947595629 2714 dbSNP
rs913490001 2720 dbSNP
rs1485594444 2726 dbSNP
rs1295971532 2728 dbSNP
rs1187175297 2730 dbSNP
rs529170823 2734 dbSNP
rs1263846087 2736 dbSNP
rs1479395726 2740 dbSNP
rs562056428 2740 dbSNP
rs1429762227 2741 dbSNP
rs1470809904 2745 dbSNP
rs682331 2746 dbSNP
rs531537611 2747 dbSNP
rs985533776 2752 dbSNP
rs530963382 2753 dbSNP
rs954146849 2754 dbSNP
rs1177090448 2759 dbSNP
rs1283162939 2761 dbSNP
rs1026740677 2766 dbSNP
rs995302637 2771 dbSNP
rs897059517 2773 dbSNP
rs564140105 2775 dbSNP
rs1139068 2791 dbSNP
rs1139069 2799 dbSNP
rs981529269 2801 dbSNP
rs370954516 2808 dbSNP
rs1221697026 2811 dbSNP
rs1269426748 2816 dbSNP
rs1014973626 2817 dbSNP
rs1175253676 2821 dbSNP
rs983868514 2823 dbSNP
rs1015544446 2830 dbSNP
rs1139070 2837 dbSNP
rs952054890 2838 dbSNP
rs1363205540 2848 dbSNP
rs545929681 2859 dbSNP
rs1303097242 2863 dbSNP
rs149007931 2869 dbSNP
rs896175087 2872 dbSNP
rs1296775567 2873 dbSNP
rs572204639 2874 dbSNP
rs1224561648 2881 dbSNP
rs112320565 2882 dbSNP
rs996416227 2883 dbSNP
rs1482662190 2885 dbSNP
rs1245263409 2886 dbSNP
rs1292481369 2888 dbSNP
rs1453222750 2894 dbSNP
rs756043735 2896 dbSNP
rs1232114613 2900 dbSNP
rs1019122052 2909 dbSNP
rs1054812193 2911 dbSNP
rs3180402 2923 dbSNP
rs492126 2925 dbSNP
rs1139072 2932 dbSNP
rs184889610 2943 dbSNP
rs1386448841 2945 dbSNP
rs3187911 2949 dbSNP
rs1314242271 2951 dbSNP
rs1043209500 2959 dbSNP
rs1168888161 2976 dbSNP
rs376890841 2977 dbSNP
rs1272933723 2984 dbSNP
rs1139074 2986 dbSNP
rs1380837996 2988 dbSNP
rs376989781 2994 dbSNP
rs1358500727 2995 dbSNP
rs1212768969 3002 dbSNP
rs1272125016 3003 dbSNP
rs1307875559 3003 dbSNP
rs1200294924 3004 dbSNP
rs913468355 3004 dbSNP
rs1460579430 3009 dbSNP
rs763434573 3009 dbSNP
rs1183716832 3014 dbSNP
rs1238722488 3015 dbSNP
rs1053402600 3018 dbSNP
rs11338849 3018 dbSNP
rs1173266726 3018 dbSNP
rs145066089 3018 dbSNP
rs555687511 3018 dbSNP
rs772041682 3018 dbSNP
rs776829698 3018 dbSNP
rs778508375 3018 dbSNP
rs869026227 3018 dbSNP
rs869287222 3018 dbSNP
rs1041438519 3019 dbSNP
rs1469503466 3019 dbSNP
rs944018795 3021 dbSNP
rs1300502149 3023 dbSNP
rs912539991 3032 dbSNP
rs1337591938 3038 dbSNP
rs1342350882 3042 dbSNP
rs985439111 3043 dbSNP
rs945723040 3050 dbSNP
rs892787745 3064 dbSNP
rs1269587023 3069 dbSNP
rs954089387 3075 dbSNP
rs1378559570 3077 dbSNP
rs145686869 3082 dbSNP
rs1450466223 3086 dbSNP
rs1369017880 3087 dbSNP
rs974304416 3098 dbSNP
rs74132038 3102 dbSNP
rs1430220815 3106 dbSNP
rs1015907235 3110 dbSNP
rs1242112338 3114 dbSNP
rs1478417540 3122 dbSNP
rs1196409354 3126 dbSNP
rs1427676539 3128 dbSNP
rs1480275308 3135 dbSNP
rs1173389646 3138 dbSNP
rs181090379 3149 dbSNP
rs1399095372 3151 dbSNP
rs1391914042 3155 dbSNP
rs1345761359 3170 dbSNP
rs577041862 3174 dbSNP
rs1401797180 3195 dbSNP
rs779458288 3196 dbSNP
rs558762772 3197 dbSNP
rs55815111 3198 dbSNP
rs981247413 3204 dbSNP
rs1422672147 3205 dbSNP
rs1276310536 3212 dbSNP
rs149769722 3218 dbSNP
rs764397058 3221 dbSNP
rs1284371239 3224 dbSNP
rs1488961669 3225 dbSNP
rs1219436406 3230 dbSNP
rs1267311764 3233 dbSNP
rs1490304784 3233 dbSNP
rs1481863222 3239 dbSNP
rs1250683356 3243 dbSNP
rs903604999 3244 dbSNP
rs763458995 3247 dbSNP
rs1204852407 3251 dbSNP
rs548282789 3254 dbSNP
rs1200017842 3269 dbSNP
rs1379626725 3270 dbSNP
rs1043530487 3271 dbSNP
rs1253544117 3272 dbSNP
rs1012147452 3274 dbSNP
rs1381039480 3279 dbSNP
rs983537059 3284 dbSNP
rs775965706 3285 dbSNP
rs1027647136 3289 dbSNP
rs1405403504 3292 dbSNP
rs1333672015 3301 dbSNP
rs3737954 3302 dbSNP
rs146572455 3303 dbSNP
rs1243117959 3306 dbSNP
rs1326363463 3327 dbSNP
rs1290299603 3343 dbSNP
rs1490319858 3345 dbSNP
rs1210859149 3354 dbSNP
rs912817262 3358 dbSNP
rs1269935371 3359 dbSNP
rs1313525184 3370 dbSNP
rs1181372489 3378 dbSNP
rs1049714966 3389 dbSNP
rs932688006 3392 dbSNP
rs1441689048 3393 dbSNP
rs1230155981 3394 dbSNP
rs1384578061 3394 dbSNP
rs1348832206 3399 dbSNP
rs919997923 3411 dbSNP
rs1458327680 3417 dbSNP
rs1394074773 3435 dbSNP
rs1390546107 3439 dbSNP
rs550070351 3442 dbSNP
rs1223660323 3446 dbSNP
rs1307700202 3456 dbSNP
rs1410153268 3463 dbSNP
rs776249148 3465 dbSNP
rs1378646248 3470 dbSNP
rs1449880556 3471 dbSNP
rs974207357 3471 dbSNP
rs866486140 3474 dbSNP
rs1246214099 3478 dbSNP
rs1372194232 3485 dbSNP
rs1291646650 3486 dbSNP
rs1337873447 3487 dbSNP
rs1424403985 3487 dbSNP
rs35493382 3487 dbSNP
rs398049850 3487 dbSNP
rs398074480 3487 dbSNP
rs531498784 3487 dbSNP
rs567677746 3487 dbSNP
rs1189551410 3489 dbSNP
rs1457341653 3494 dbSNP
rs966880581 3505 dbSNP
rs201953522 3517 dbSNP
rs1171084909 3522 dbSNP
rs1020478858 3524 dbSNP
rs1467923051 3530 dbSNP
rs111987635 3555 dbSNP
rs1397213738 3560 dbSNP
rs560327304 3565 dbSNP
rs745719115 3583 dbSNP
rs1471348461 3594 dbSNP
rs1325197805 3606 dbSNP
rs1227209291 3607 dbSNP
rs1054126859 3608 dbSNP
rs960576000 3613 dbSNP
rs1033637607 3619 dbSNP
rs1001864233 3634 dbSNP
rs1202044684 3637 dbSNP
rs967736929 3640 dbSNP
rs541417874 3641 dbSNP
rs1202242508 3644 dbSNP
rs1473088528 3645 dbSNP
rs370126604 3650 dbSNP
rs1045598944 3664 dbSNP
rs949910042 3669 dbSNP
rs7360 3678 dbSNP
rs1031805597 3693 dbSNP
rs1175285910 3695 dbSNP
rs1359371033 3702 dbSNP
rs1467196360 3703 dbSNP
rs1488432503 3710 dbSNP
rs563007941 3712 dbSNP
rs1266595873 3724 dbSNP
rs1215601715 3725 dbSNP
rs1048311133 3732 dbSNP
rs559301695 3733 dbSNP
rs747645410 3734 dbSNP
rs1279345834 3755 dbSNP
rs1049994540 3765 dbSNP
rs778589156 3772 dbSNP
rs1300928564 3773 dbSNP
rs1047973 3776 dbSNP
rs74132037 3780 dbSNP
rs1373449339 3784 dbSNP
rs1485559291 3785 dbSNP
rs373708693 3796 dbSNP
rs1265177666 3798 dbSNP
rs570197022 3802 dbSNP
rs1198419448 3804 dbSNP
rs1425483565 3828 dbSNP
rs558725971 3829 dbSNP
rs912167028 3830 dbSNP
rs987705748 3834 dbSNP
rs1419704624 3837 dbSNP
rs908621298 3840 dbSNP
rs992004371 3846 dbSNP
rs540466697 3851 dbSNP
rs926515509 3852 dbSNP
rs1021117028 3853 dbSNP
rs1368684681 3855 dbSNP
rs1221182916 3859 dbSNP
rs980709296 3866 dbSNP
rs1305051624 3868 dbSNP
rs967976329 3876 dbSNP
rs746527483 3882 dbSNP
rs777247699 3883 dbSNP
rs139275274 3885 dbSNP
rs1162139494 3887 dbSNP
rs200718725 3895 dbSNP
rs1255713578 3897 dbSNP
rs1204435664 3898 dbSNP
rs1462738649 3900 dbSNP
rs1460890474 3902 dbSNP
rs1369016242 3905 dbSNP
rs1256181521 3907 dbSNP
rs1175126218 3912 dbSNP
rs748070205 3915 dbSNP
rs555050123 3931 dbSNP
rs1032693438 3933 dbSNP
rs1242321442 3937 dbSNP
rs754740853 3939 dbSNP
rs1312946428 3941 dbSNP
rs1382750918 3943 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agugGUAACGAUUU--CACGUUAa 5'
              || | :| ||  ||||||| 
Target 5' ucugCACUUUUCAAUUGUGCAAUc 3'
6 - 29
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 116496.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agugGUAACGAUUU--CACGUUAa 5'
              || | :| ||  ||||||| 
Target 5' ucugCACUUUUCAAUUGUGCAAUc 3'
6 - 29
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 116496.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000367511.3 | 3UTR | UAUACUCUGCACUUUUCAAUUGUGCAAUCUUCUUGUGCACUUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000367511.3 | 3UTR | UAUACUCUGCACUUUUCAAUUGUGCAAUCUUCUUGUGCACUUUAAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000367511.3 | 3UTR | UAUACUCUGCACUUUUCAAUUGUGCAAUCUUCUUGUGCACUUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE21849 B cell lymphoma -0.527 1.7e-3 -0.244 1.0e-1 29 Click to see details
GSE17498 Multiple myeloma -0.442 2.1e-3 -0.343 1.5e-2 40 Click to see details
GSE27834 Pluripotent stem cells 0.543 1.5e-2 0.665 2.5e-3 16 Click to see details
GSE28260 Renal cortex and medulla 0.584 1.8e-2 0.573 2.0e-2 13 Click to see details
GSE28544 Breast cancer -0.403 2.5e-2 -0.437 1.6e-2 24 Click to see details
GSE38226 Liver fibrosis 0.382 4.4e-2 0.329 7.3e-2 21 Click to see details
GSE19350 CNS germ cell tumors -0.469 6.2e-2 -0.371 1.2e-1 12 Click to see details
GSE42095 Differentiated embryonic stem cells -0.3 8.2e-2 -0.397 3.0e-2 23 Click to see details
GSE17306 Multiple myeloma -0.16 1.4e-1 0.318 1.3e-2 49 Click to see details
GSE21687 Ependynoma primary tumors -0.118 1.8e-1 -0.114 1.8e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.188 1.9e-1 -0.282 9.1e-2 24 Click to see details
GSE32688 Pancreatic cancer -0.147 2.1e-1 -0.101 2.9e-1 32 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.44 2.3e-1 -0.500 2.0e-1 5 Click to see details
GSE14794 Lymphoblastoid cells -0.073 2.5e-1 -0.096 1.8e-1 90 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.079 3.5e-1 -0.189 1.8e-1 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.024 4.6e-1 -0.469 1.8e-2 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.024 4.6e-1 -0.469 1.8e-2 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
255 hsa-miR-367-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055315 DUSP5 dual specificity phosphatase 5 2 8
MIRT055791 PLEKHA1 pleckstrin homology domain containing A1 2 12
MIRT057114 DDIT4 DNA damage inducible transcript 4 2 4
MIRT059663 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT059926 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT061610 BTG2 BTG anti-proliferation factor 2 2 6
MIRT066478 HMGA2 high mobility group AT-hook 2 2 2
MIRT069388 ZFYVE21 zinc finger FYVE-type containing 21 2 2
MIRT069972 GEMIN2 gem nuclear organelle associated protein 2 2 2
MIRT074764 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT076199 GID4 GID complex subunit 4 homolog 2 6
MIRT077512 UBE2Z ubiquitin conjugating enzyme E2 Z 2 4
MIRT077903 TOB1 transducer of ERBB2, 1 2 6
MIRT082250 MED29 mediator complex subunit 29 2 4
MIRT082434 CIC capicua transcriptional repressor 2 6
MIRT082474 PPP1R37 protein phosphatase 1 regulatory subunit 37 2 2
MIRT082778 ZNF264 zinc finger protein 264 2 2
MIRT084533 BCL2L11 BCL2 like 11 2 8
MIRT085309 UBXN4 UBX domain protein 4 2 8
MIRT086365 SSFA2 sperm specific antigen 2 2 8
MIRT087455 NF2 neurofibromin 2 2 2
MIRT088865 FOXN2 forkhead box N2 2 12
MIRT092185 ITPR1 inositol 1,4,5-trisphosphate receptor type 1 2 6
MIRT092326 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT093533 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096935 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 8
MIRT097026 MAP1B microtubule associated protein 1B 2 4
MIRT099137 MYLIP myosin regulatory light chain interacting protein 2 6
MIRT099905 SOX4 SRY-box 4 2 12
MIRT102289 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT102507 KLHDC10 kelch domain containing 10 2 2
MIRT102891 INSIG1 insulin induced gene 1 2 2
MIRT109188 VMA21 VMA21, vacuolar ATPase assembly factor 2 4
MIRT124567 PRRC2B proline rich coiled-coil 2B 2 2
MIRT135568 SPRYD4 SPRY domain containing 4 2 2
MIRT161135 SLC25A36 solute carrier family 25 member 36 2 6
MIRT163995 KIAA1109 KIAA1109 2 4
MIRT164689 RNF4 ring finger protein 4 2 2
MIRT167705 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 2 8
MIRT178956 USP28 ubiquitin specific peptidase 28 2 2
MIRT185717 ARNTL2 aryl hydrocarbon receptor nuclear translocator like 2 2 2
MIRT186264 TCEB3 elongin A 2 2
MIRT186537 TWF1 twinfilin actin binding protein 1 2 4
MIRT186628 COX20 COX20, cytochrome c oxidase assembly factor 2 8
MIRT189373 TXLNA taxilin alpha 2 4
MIRT197013 EIF1 eukaryotic translation initiation factor 1 2 10
MIRT206437 YIPF4 Yip1 domain family member 4 2 2
MIRT211228 FGF2 fibroblast growth factor 2 2 10
MIRT214529 C5ORF24 chromosome 5 open reading frame 24 2 2
MIRT216034 IL6ST interleukin 6 signal transducer 2 10
MIRT218084 TULP4 tubby like protein 4 2 2
MIRT242418 CCDC113 coiled-coil domain containing 113 2 2
MIRT243162 SOX11 SRY-box 11 2 2
MIRT250943 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT253350 ZNF417 zinc finger protein 417 2 2
MIRT271968 ARF1 ADP ribosylation factor 1 2 2
MIRT273214 ZNF695 zinc finger protein 695 2 4
MIRT296114 SLC12A5 solute carrier family 12 member 5 2 2
MIRT301711 TEF TEF, PAR bZIP transcription factor 2 2
MIRT316477 ARID1B AT-rich interaction domain 1B 2 6
MIRT322174 CLN8 CLN8, transmembrane ER and ERGIC protein 2 4
MIRT341538 CNIH1 cornichon family AMPA receptor auxiliary protein 1 2 6
MIRT356062 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT443579 PPIC peptidylprolyl isomerase C 2 2
MIRT448825 FKBP1A FK506 binding protein 1A 2 4
MIRT451494 FOPNL FGFR1OP N-terminal like 2 2
MIRT452694 MDM2 MDM2 proto-oncogene 2 2
MIRT453167 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT454588 SLC33A1 solute carrier family 33 member 1 2 4
MIRT455794 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT456010 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456044 KIAA1586 KIAA1586 2 2
MIRT456763 TMEM239 transmembrane protein 239 2 4
MIRT458068 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT459230 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT459534 MFF mitochondrial fission factor 2 6
MIRT459759 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT460236 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT461104 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462924 ZNRF3 zinc and ring finger 3 2 2
MIRT463476 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463516 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT465503 TOR1B torsin family 1 member B 2 2
MIRT469525 RBFOX2 RNA binding protein, fox-1 homolog 2 2 8
MIRT470079 PTGES2 prostaglandin E synthase 2 2 2
MIRT471581 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT473451 MCOLN2 mucolipin 2 2 8
MIRT475882 H3F3C H3 histone family member 3C 2 10
MIRT475915 H3F3B H3 histone family member 3B 2 8
MIRT476195 GOLGA8A golgin A8 family member A 2 10
MIRT476318 GM2A GM2 ganglioside activator 2 2
MIRT476676 FUT11 fucosyltransferase 11 2 10
MIRT478368 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT479545 CDC5L cell division cycle 5 like 2 2
MIRT481024 BAZ2B bromodomain adjacent to zinc finger domain 2B 2 2
MIRT491009 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT493168 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT494345 CASKIN1 CASK interacting protein 1 2 2
MIRT499087 ZDHHC21 zinc finger DHHC-type containing 21 2 6
MIRT500029 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501298 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 4
MIRT503124 BCL11B B-cell CLL/lymphoma 11B 2 8
MIRT503301 GTF2A1 general transcription factor IIA subunit 1 2 6
MIRT504328 ASGR2 asialoglycoprotein receptor 2 2 6
MIRT504471 EID2B EP300 interacting inhibitor of differentiation 2B 2 2
MIRT504655 RPL9 ribosomal protein L9 2 6
MIRT505331 TMF1 TATA element modulatory factor 1 2 8
MIRT505732 SERTAD3 SERTA domain containing 3 2 4
MIRT505827 RSBN1 round spermatid basic protein 1 2 8
MIRT506004 PURG purine rich element binding protein G 2 8
MIRT506308 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 6
MIRT506806 KLHL15 kelch like family member 15 2 6
MIRT507119 GOLGA8B golgin A8 family member B 2 6
MIRT507353 FAM129A family with sequence similarity 129 member A 2 6
MIRT507591 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT507674 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 4
MIRT507703 CNOT2 CCR4-NOT transcription complex subunit 2 2 8
MIRT508012 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT510439 ZIC5 Zic family member 5 2 6
MIRT510539 XKR7 XK related 7 2 4
MIRT510600 TPPP tubulin polymerization promoting protein 2 6
MIRT511060 NRAS NRAS proto-oncogene, GTPase 2 4
MIRT511855 GOLGA8J golgin A8 family member J 2 6
MIRT511865 GOLGA8I golgin A8 family member I, pseudogene 1 3
MIRT512570 CTDSPL CTD small phosphatase like 2 2
MIRT512708 ZNF134 zinc finger protein 134 2 6
MIRT513177 MOAP1 modulator of apoptosis 1 2 6
MIRT513783 PAWR pro-apoptotic WT1 regulator 2 6
MIRT515099 IRGQ immunity related GTPase Q 2 2
MIRT515481 INCENP inner centromere protein 2 4
MIRT517416 BMP8A bone morphogenetic protein 8a 2 2
MIRT518754 C1orf35 chromosome 1 open reading frame 35 2 2
MIRT519780 ZNF354B zinc finger protein 354B 2 4
MIRT519865 ZFP62 ZFP62 zinc finger protein 2 6
MIRT520510 TRAM2 translocation associated membrane protein 2 2 6
MIRT521068 SLC25A32 solute carrier family 25 member 32 2 6
MIRT526912 ZNF772 zinc finger protein 772 2 6
MIRT527134 GULP1 GULP, engulfment adaptor PTB domain containing 1 2 2
MIRT527867 SLC39A14 solute carrier family 39 member 14 2 2
MIRT528404 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT532956 ZNF24 zinc finger protein 24 2 4
MIRT533021 ZFC3H1 zinc finger C3H1-type containing 2 4
MIRT533191 WASL Wiskott-Aldrich syndrome like 2 6
MIRT534191 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534961 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 4
MIRT536396 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT537046 GRAMD4 GRAM domain containing 4 2 2
MIRT537125 GOLGA3 golgin A3 2 4
MIRT537183 GFPT2 glutamine-fructose-6-phosphate transaminase 2 2 4
MIRT537652 ERGIC2 ERGIC and golgi 2 2 4
MIRT538632 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT539231 ANP32E acidic nuclear phosphoprotein 32 family member E 2 6
MIRT540099 NPY4R neuropeptide Y receptor Y4 2 2
MIRT540998 ZNF460 zinc finger protein 460 2 4
MIRT541468 AURKA aurora kinase A 2 2
MIRT542680 SESN3 sestrin 3 2 2
MIRT542757 PRRG4 proline rich and Gla domain 4 2 2
MIRT542863 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT542925 HOXC8 homeobox C8 2 2
MIRT543747 SZRD1 SUZ RNA binding domain containing 1 2 2
MIRT544404 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT544583 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 4
MIRT544662 MED19 mediator complex subunit 19 2 2
MIRT545251 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT545261 TRIM36 tripartite motif containing 36 2 4
MIRT545744 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT545999 WDR81 WD repeat domain 81 2 2
MIRT546038 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT547170 PDZD8 PDZ domain containing 8 2 2
MIRT547273 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT547729 KIF5B kinesin family member 5B 2 2
MIRT548127 GATA6 GATA binding protein 6 2 2
MIRT548203 FNIP1 folliculin interacting protein 1 2 2
MIRT548756 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT549641 ZNF75A zinc finger protein 75a 2 2
MIRT549684 ZNF598 zinc finger protein 598 2 2
MIRT550197 MRO maestro 2 2
MIRT550340 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT550536 MYZAP myocardial zonula adherens protein 2 2
MIRT550975 TOR4A torsin family 4 member A 2 2
MIRT551221 CIDEC cell death inducing DFFA like effector c 2 2
MIRT551355 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT551571 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT552277 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552661 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT553081 UCK2 uridine-cytidine kinase 2 2 2
MIRT553753 TBC1D8 TBC1 domain family member 8 2 2
MIRT554030 SPCS3 signal peptidase complex subunit 3 2 2
MIRT554099 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT554155 SLX4 SLX4 structure-specific endonuclease subunit 2 2
MIRT554815 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT555522 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555597 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT555632 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 4
MIRT555679 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT555827 PAX9 paired box 9 2 2
MIRT555868 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT555939 NUP43 nucleoporin 43 2 2
MIRT555994 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT556340 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556432 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT556585 LHFPL2 LHFPL tetraspan subfamily member 2 2 4
MIRT556801 KIAA1958 KIAA1958 2 2
MIRT558047 EXOC5 exocyst complex component 5 2 2
MIRT558697 CLTA clathrin light chain A 2 2
MIRT559191 BMPR1A bone morphogenetic protein receptor type 1A 2 4
MIRT559639 AKAP10 A-kinase anchoring protein 10 2 2
MIRT559707 AEN apoptosis enhancing nuclease 2 2
MIRT560673 SRFBP1 serum response factor binding protein 1 2 2
MIRT560990 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT562170 HOXA13 homeobox A13 2 2
MIRT562275 GNAQ G protein subunit alpha q 2 2
MIRT563624 ZNF277 zinc finger protein 277 2 2
MIRT563815 FMN1 formin 1 2 2
MIRT564096 TLR3 toll like receptor 3 2 2
MIRT565320 TMEM41A transmembrane protein 41A 2 2
MIRT565986 RNF44 ring finger protein 44 2 2
MIRT566047 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT568236 C11orf24 chromosome 11 open reading frame 24 2 2
MIRT568310 BAK1 BCL2 antagonist/killer 1 2 2
MIRT572376 ATOX1 antioxidant 1 copper chaperone 2 2
MIRT574822 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT609212 PELP1 proline, glutamate and leucine rich protein 1 2 2
MIRT616217 RBM27 RNA binding motif protein 27 2 2
MIRT629087 FASLG Fas ligand 2 2
MIRT632124 FKBP9 FK506 binding protein 9 2 2
MIRT632576 POLQ DNA polymerase theta 2 2
MIRT634799 ENTHD1 ENTH domain containing 1 2 2
MIRT636553 ESRP1 epithelial splicing regulatory protein 1 2 2
MIRT640977 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT653875 SH2B3 SH2B adaptor protein 3 2 2
MIRT655598 OTUD7B OTU deubiquitinase 7B 2 2
MIRT659764 CCDC171 coiled-coil domain containing 171 2 2
MIRT660744 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT681037 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT682305 RBM28 RNA binding motif protein 28 2 2
MIRT682573 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT686217 ZNF267 zinc finger protein 267 2 2
MIRT687209 PLXNA3 plexin A3 2 2
MIRT690630 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT692419 AGMAT agmatinase 2 2
MIRT694437 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT700725 PNO1 partner of NOB1 homolog 2 2
MIRT701549 NARF nuclear prelamin A recognition factor 2 2
MIRT704379 DAND5 DAN domain BMP antagonist family member 5 2 2
MIRT707935 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT709939 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT711371 MED7 mediator complex subunit 7 2 2
MIRT712327 PER2 period circadian clock 2 2 2
MIRT714515 SHE Src homology 2 domain containing E 2 2
MIRT715520 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT724294 OSMR oncostatin M receptor 2 2
MIRT725358 MUC21 mucin 21, cell surface associated 2 2
MIRT732242 KLF4 Kruppel like factor 4 3 1
MIRT735384 SPAG5 sperm associated antigen 5 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-367 Medpor NULL NULL Microarray osteoblast-like cells line (MG-63) 18408260 2008 up-regulated
miR-367 Activin A NULL 229455 Quantitative real-time PCR Human embryonic stem (hES) cells 19885849 2010 up-regulated
miR-367 Mistletoe lectin-I NULL NULL Microarray colorectal cancer cells CLY cells 20955366 2011 down-regulated
miR-367 Doxorubicin approved 31703 Quantitative real-time PCR heart 22859947 2012 up-regulated
miR-367 Paclitaxel approved 36314 Microarray Ovarian cancer cell lines 24220856 2014 up-regulated
miR-367 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-367 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-367-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-367-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-367-3p Siop Treatment Protocol sensitive High Nephroblastoma tissue
hsa-miR-367-3p Paclitaxel 36314 NSC125973 approved resistant High Pan-Cancer cell line (NCI-H460, NCI-H522, NCI-H322M, HOP62, A549, EKVX, MALME-3M, NCI-H226, HT-29, HCT-116, SE-620, HCT-15, HCC2998, COLO205, HS-578T, NCI/ADR-RES, OVCAR8, OVCAR4, ACHN, SN-12C, 786-O, CAKI-1, UO-31, TK-10, A498, SK-MEL-28, UACC-257, M14, UACC-62, SK
hsa-miR-367-3p Doxorubicin 31703 NSC123127 approved sensitive High Hepatocellular Carcinoma tissue and cell line (HepG2)
hsa-miR-367-3p Mitoxantrone 4212 NSC279836 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-367-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (SKhep1, HA22T)
hsa-miR-367-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-367-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-367-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-367-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-367-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-367-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-367-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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