pre-miRNA Information
pre-miRNA hsa-mir-4781   
Genomic Coordinates chr1: 54054079 - 54054154
Description Homo sapiens miR-4781 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4781-3p
Sequence 46| AAUGUUGGAAUCCUCGCUAGAG |67
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs968609764 2 dbSNP
rs899910686 3 dbSNP
rs74085143 4 dbSNP
rs550946107 8 dbSNP
rs747064911 10 dbSNP
rs1352517651 13 dbSNP
rs1436072914 22 dbSNP
Putative Targets

Gene Information
Gene Symbol GSG1   
Synonyms -
Description germ cell associated 1
Transcript NM_001080554   
Other Transcripts NM_001080555 , NM_031289 , NM_153823   
Expression
Putative miRNA Targets on GSG1
3'UTR of GSG1
(miRNA target sites are highlighted)
>GSG1|NM_001080554|3'UTR
   1 TAAGAGCTTCAAGGAAAACCCGAACTGCCTACCACATCACCATCAGTGTTTCCCTCGGCGGCTGTCAAGTGCAGCCCCCA
  81 CCGTGGGTCCTTTGACCAGCTACCACCAGTATCATAATCAGCCCATCCACTCTGTCTCTGAGGGAGTCGACTTCTACTCC
 161 GAGCTGCGGAACAAGGGATTTCAAAGAGGGGCCAGCCAGGAGCTGAAAGAAGCAGTTAGGTCATCTGTAGAGGAAGAGCA
 241 GTGTTAGGAGTTAAGCGGGTTTGGGGAGTAGGCTTGAGCCCTACCTTACACGTCTGCTGATTATCAACATGTGCTTAAGC
 321 CAACATCCGTCTCTTGAGCATGGTTTTTAGAGGCTACGAATAAGGCTATGAATAAGGGTTATCTTTAAGTCCTAAGGGAT
 401 TCCTGGGTGCCACTGCTCTCTTTTCCTCTACAGCTCCATCTTGTTTCACCCACCCCACATCTCACACATCCAGAATTCCC
 481 TTCTTTACTGATAGTTTCTGTGCCAGGTTCTGGGCTAAACCATGGAGATAAAAAGAAGAGTAAAATACACTTCCCGACCT
 561 TAAGGATCTGATACATCTAGTTATTGGTCTGGAAATTGGAGAAATGGAGGTGAGCAAATTAACGGTAGTGTGACTGTGGC
 641 TCAACTTTCCATGGTACGCGCGAATTGTTCTGGAAGTCACAGATGGGAAGACAGAAGCGCCCCTGAGTGCTTTGTCATAT
 721 AGCACAGAAGTCCTCCACACTGCCTGGGACAGTGTCCTGCATCCACACAGTAGGTACCCAGTAAAAGTGTTATTAAATAT
 801 TGTCCCAGGAGCCCTTAGGAGAGTGGTTTAACATGAGAAGGCGCCAACAGCACACAGGGTCAGGGTCACTTCTAGAAATA
 881 GCCCACCAAGGCTATTCAGATTGGACTGTGGTTCCCTTCTGGACAGTCACACCAGGGACTTCCCAGTGAACAAGGGGGCA
 961 TAGGCTCCTCTCTGGATCCCACCTTTTCATCCCTTCTGAGAAATGTACCCTATTATTTCCTTCATAAAGAATGCCACCCA
1041 TCTGATTCCTCAAGAATCTAGACCTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAGATACCCAAAGGATTAC
1121 AAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTACGGCACTATTTATAATAGCAAAGACTTGGAACCAACC
1201 CAAATGTCCATCAGTGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAGAAGG
1281 ATGAGTTTATGCCCTTTGTAGGGACATGGATGAAGCTGGAAACCATCATTCTGAGCAAACTATCGCAAGGATAGAAAACC
1361 AAACACTGCATATTCTCACTCACAGGTGGGAATTGAACAATAAAAACACTTGGACACAGGGTGGGGAACATCACACACCG
1441 GGCCTGTCATGGGGTGGGGGGAGGGGGGAGGGATAGCATTAGGAGATATACTAACGTAAATGACGAGTTAATGGGTGCAG
1521 CACACCAACATGGCACATGTATACATATGTAACAAATCTGCACGTTGTGCACATGTACCCTAGAACTTAAAAAAAAAAAA
1601 AAAAGAATGCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gagaUCGC-UCCUAAGGUUGUAa 5'
              :|:| || |  ||||||| 
Target 5' aatgGGTGCAGCACACCAACATg 3'
1510 - 1532 150.00 -10.30
2
miRNA  3' gagauCGCUCCUAAGGUUGUAa 5'
               |:|   |  ||||||| 
Target 5' aacatGTGCTTAAGCCAACATc 3'
306 - 327 141.00 -9.10
3
miRNA  3' gagauCGCUCCUAAGGUUGUaa 5'
               | || |:  ||||||  
Target 5' aacatGAGAAGGCGCCAACAgc 3'
830 - 851 129.00 -10.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM9369016 14 COSMIC
COSM1586306 21 COSMIC
COSM2228859 22 COSMIC
COSM3384155 46 COSMIC
COSM4512186 52 COSMIC
COSM6553048 55 COSMIC
COSM3458186 56 COSMIC
COSM9253229 59 COSMIC
COSM1605800 60 COSMIC
COSM8739426 66 COSMIC
COSM9059556 79 COSMIC
COSM6032650 83 COSMIC
COSM8629126 121 COSMIC
COSM7760352 123 COSMIC
COSM7760157 124 COSMIC
COSM5684033 127 COSMIC
COSM8593284 132 COSMIC
COSM5430988 137 COSMIC
COSM5349772 144 COSMIC
COSM4040199 149 COSMIC
COSM937106 181 COSMIC
COSM8444585 182 COSMIC
COSM9235397 191 COSMIC
COSM6583799 211 COSMIC
COSM9247398 222 COSMIC
COSM5631724 230 COSMIC
COSM5970598 237 COSMIC
COSM5951873 243 COSMIC
COSN30565321 290 COSMIC
COSN20054519 292 COSMIC
COSN28676701 341 COSMIC
COSN15668224 342 COSMIC
COSN31586249 357 COSMIC
COSN27307249 492 COSMIC
COSN20472380 715 COSMIC
COSN22986664 1327 COSMIC
COSN2460443 1458 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1192258616 8 dbSNP
rs1478005555 9 dbSNP
rs1265279596 12 dbSNP
rs752726381 19 dbSNP
rs1485299527 20 dbSNP
rs762192462 21 dbSNP
rs965546168 22 dbSNP
rs774559031 43 dbSNP
rs768663666 45 dbSNP
rs771719354 46 dbSNP
rs749214852 52 dbSNP
rs779885181 54 dbSNP
rs558298554 56 dbSNP
rs545591892 57 dbSNP
rs554709695 59 dbSNP
rs373360047 60 dbSNP
rs1416215803 61 dbSNP
rs1394649016 62 dbSNP
rs757887520 70 dbSNP
rs1256642782 73 dbSNP
rs1465947348 76 dbSNP
rs1006634239 77 dbSNP
rs1162510506 80 dbSNP
rs754331794 82 dbSNP
rs369212516 83 dbSNP
rs1016683599 84 dbSNP
rs1189054334 85 dbSNP
rs1435517069 87 dbSNP
rs1249397595 92 dbSNP
rs1198810886 94 dbSNP
rs1319551802 96 dbSNP
rs1260460844 97 dbSNP
rs1457225586 99 dbSNP
rs376055173 103 dbSNP
rs373369096 104 dbSNP
rs1285263934 108 dbSNP
rs1450329259 109 dbSNP
rs768051558 110 dbSNP
rs896796399 111 dbSNP
rs1006219679 113 dbSNP
rs1402694992 116 dbSNP
rs1394678934 119 dbSNP
rs886557483 122 dbSNP
rs1460690329 123 dbSNP
rs1414473883 124 dbSNP
rs1164865781 134 dbSNP
rs1382937453 136 dbSNP
rs1468159756 140 dbSNP
rs1228617679 142 dbSNP
rs1289732319 144 dbSNP
rs369027741 146 dbSNP
rs774751028 148 dbSNP
rs376830090 149 dbSNP
rs1250723933 153 dbSNP
rs1212247500 156 dbSNP
rs372526990 160 dbSNP
rs745875459 161 dbSNP
rs1256530586 163 dbSNP
rs1230595327 167 dbSNP
rs1054954692 168 dbSNP
rs1308679271 169 dbSNP
rs776401638 172 dbSNP
rs113320245 176 dbSNP
rs1409905114 182 dbSNP
rs1055264335 185 dbSNP
rs1324076788 186 dbSNP
rs1176822445 188 dbSNP
rs1479932398 189 dbSNP
rs938265140 191 dbSNP
rs1350185612 194 dbSNP
rs746633593 195 dbSNP
rs139963932 196 dbSNP
rs1371534465 197 dbSNP
rs556058400 202 dbSNP
rs1158769973 205 dbSNP
rs1359011824 209 dbSNP
rs1440960055 212 dbSNP
rs1309504641 215 dbSNP
rs913004737 220 dbSNP
rs747615000 222 dbSNP
rs1192557449 228 dbSNP
rs146166808 230 dbSNP
rs913218539 236 dbSNP
rs865779952 237 dbSNP
rs1445812701 243 dbSNP
rs756675582 248 dbSNP
rs570562453 256 dbSNP
rs965597289 257 dbSNP
rs751015690 261 dbSNP
rs923118178 264 dbSNP
rs1368558908 266 dbSNP
rs974565917 269 dbSNP
rs745551723 270 dbSNP
rs1222025710 274 dbSNP
rs1428350686 275 dbSNP
rs1359859987 284 dbSNP
rs757723608 291 dbSNP
rs1421005137 292 dbSNP
rs1373032253 297 dbSNP
rs1460625369 299 dbSNP
rs552299673 305 dbSNP
rs144390418 310 dbSNP
rs1480398369 321 dbSNP
rs112790824 324 dbSNP
rs189159052 328 dbSNP
rs1026296483 329 dbSNP
rs1191851816 329 dbSNP
rs1013683179 333 dbSNP
rs566167253 339 dbSNP
rs1034300854 340 dbSNP
rs7970258 341 dbSNP
rs375132927 348 dbSNP
rs1024631205 350 dbSNP
rs756967638 357 dbSNP
rs748866586 358 dbSNP
rs1385052498 364 dbSNP
rs1302624449 370 dbSNP
rs1365781223 375 dbSNP
rs891474651 378 dbSNP
rs1230357158 381 dbSNP
rs556613990 388 dbSNP
rs895070188 392 dbSNP
rs777398439 400 dbSNP
rs1222569985 402 dbSNP
rs1267345184 405 dbSNP
rs1052687071 406 dbSNP
rs933073981 415 dbSNP
rs748145208 419 dbSNP
rs1451802260 425 dbSNP
rs936518105 450 dbSNP
rs923043394 457 dbSNP
rs1334987451 458 dbSNP
rs756682852 465 dbSNP
rs1409057214 468 dbSNP
rs1165004847 473 dbSNP
rs903655934 476 dbSNP
rs1384075032 481 dbSNP
rs1459436040 483 dbSNP
rs1324573094 486 dbSNP
rs1389294917 492 dbSNP
rs1385807380 500 dbSNP
rs1360986592 503 dbSNP
rs1043562347 507 dbSNP
rs1315134584 508 dbSNP
rs1320080172 512 dbSNP
rs975019065 523 dbSNP
rs1288307530 527 dbSNP
rs1213146896 533 dbSNP
rs943206061 539 dbSNP
rs909147658 540 dbSNP
rs1451601544 542 dbSNP
rs984744555 550 dbSNP
rs562035471 555 dbSNP
rs781492814 556 dbSNP
rs753104519 563 dbSNP
rs950578329 564 dbSNP
rs1026319403 566 dbSNP
rs992155059 567 dbSNP
rs767945864 568 dbSNP
rs539828717 572 dbSNP
rs1183916927 574 dbSNP
rs1415530907 581 dbSNP
rs913274478 586 dbSNP
rs1163668379 587 dbSNP
rs1164044961 596 dbSNP
rs1041016328 599 dbSNP
rs1316170108 600 dbSNP
rs944007722 606 dbSNP
rs911477170 607 dbSNP
rs1304303783 609 dbSNP
rs543775915 623 dbSNP
rs190903880 624 dbSNP
rs1002808273 625 dbSNP
rs904039174 629 dbSNP
rs1226611442 631 dbSNP
rs1022855884 633 dbSNP
rs368019851 644 dbSNP
rs1485217785 652 dbSNP
rs1212693220 653 dbSNP
rs1294573810 655 dbSNP
rs531993303 657 dbSNP
rs116137568 658 dbSNP
rs1052759734 659 dbSNP
rs1473299500 660 dbSNP
rs546377441 661 dbSNP
rs571850996 662 dbSNP
rs1229912269 670 dbSNP
rs1373368566 681 dbSNP
rs1414432765 696 dbSNP
rs1327222724 698 dbSNP
rs1308896271 699 dbSNP
rs1317767557 700 dbSNP
rs1380597188 705 dbSNP
rs1440134834 710 dbSNP
rs1367434772 712 dbSNP
rs1038765178 717 dbSNP
rs1278699594 720 dbSNP
rs943091682 722 dbSNP
rs553438049 723 dbSNP
rs1347573707 733 dbSNP
rs909061730 739 dbSNP
rs961153346 741 dbSNP
rs1024693226 749 dbSNP
rs1179131223 750 dbSNP
rs1048885552 754 dbSNP
rs1231799289 756 dbSNP
rs1478342125 762 dbSNP
rs929245314 771 dbSNP
rs1393144866 773 dbSNP
rs1433895565 774 dbSNP
rs1168933856 780 dbSNP
rs1372651422 789 dbSNP
rs1013258645 797 dbSNP
rs1328342418 805 dbSNP
rs959001206 811 dbSNP
rs1439270453 821 dbSNP
rs1301924951 823 dbSNP
rs139655850 824 dbSNP
rs771802963 824 dbSNP
rs1229607058 825 dbSNP
rs919165801 827 dbSNP
rs1277203551 833 dbSNP
rs992186585 842 dbSNP
rs960678453 843 dbSNP
rs1271725086 846 dbSNP
rs1451703319 858 dbSNP
rs1372143165 869 dbSNP
rs1251081018 881 dbSNP
rs574108288 882 dbSNP
rs1453656552 890 dbSNP
rs926592903 891 dbSNP
rs1189054747 894 dbSNP
rs1391772468 897 dbSNP
rs903707332 900 dbSNP
rs1481141059 907 dbSNP
rs980891652 914 dbSNP
rs1042220461 916 dbSNP
rs766652120 923 dbSNP
rs1323892589 928 dbSNP
rs891889894 930 dbSNP
rs1223930325 932 dbSNP
rs1300321767 934 dbSNP
rs1325013138 935 dbSNP
rs1227097180 937 dbSNP
rs1041073991 944 dbSNP
rs1490316861 951 dbSNP
rs555696972 959 dbSNP
rs944054882 959 dbSNP
rs1288224783 961 dbSNP
rs911196620 964 dbSNP
rs1270728765 966 dbSNP
rs537750984 973 dbSNP
rs747953187 978 dbSNP
rs1468027283 983 dbSNP
rs1018712463 990 dbSNP
rs1209253858 996 dbSNP
rs1022464971 1001 dbSNP
rs35692581 1004 dbSNP
rs1009689594 1006 dbSNP
rs1050452912 1007 dbSNP
rs956986726 1021 dbSNP
rs1192142987 1023 dbSNP
rs931566953 1025 dbSNP
rs1340398757 1026 dbSNP
rs1473894246 1038 dbSNP
rs920120046 1042 dbSNP
rs1417222972 1044 dbSNP
rs12579533 1048 dbSNP
rs1225442911 1053 dbSNP
rs1347471774 1055 dbSNP
rs1283960107 1059 dbSNP
rs1404310188 1063 dbSNP
rs1458262764 1064 dbSNP
rs972920985 1067 dbSNP
rs570720007 1073 dbSNP
rs1383372187 1084 dbSNP
rs1343532817 1093 dbSNP
rs1029858887 1101 dbSNP
rs1335197659 1108 dbSNP
rs1340772194 1117 dbSNP
rs187549888 1118 dbSNP
rs757837235 1120 dbSNP
rs901528665 1131 dbSNP
rs1333488705 1142 dbSNP
rs1330725774 1143 dbSNP
rs1262446065 1145 dbSNP
rs1484813628 1146 dbSNP
rs1204402145 1147 dbSNP
rs1256579421 1148 dbSNP
rs1039082563 1150 dbSNP
rs375402960 1164 dbSNP
rs566205853 1165 dbSNP
rs1007311628 1172 dbSNP
rs763145946 1173 dbSNP
rs868000620 1174 dbSNP
rs887519338 1182 dbSNP
rs1048955904 1189 dbSNP
rs929109238 1190 dbSNP
rs146365180 1192 dbSNP
rs1480417624 1201 dbSNP
rs1056413087 1204 dbSNP
rs939235823 1214 dbSNP
rs570983673 1218 dbSNP
rs1362576085 1219 dbSNP
rs1001225470 1220 dbSNP
rs1173591098 1222 dbSNP
rs1404777189 1223 dbSNP
rs1416287688 1239 dbSNP
rs1310727635 1240 dbSNP
rs926651271 1243 dbSNP
rs1245477456 1252 dbSNP
rs967988632 1261 dbSNP
rs1308512071 1270 dbSNP
rs1315115346 1273 dbSNP
rs1184492530 1283 dbSNP
rs1438765800 1284 dbSNP
rs773323728 1288 dbSNP
rs1272657538 1290 dbSNP
rs968200092 1293 dbSNP
rs751863880 1316 dbSNP
rs1208393639 1318 dbSNP
rs1325868430 1325 dbSNP
rs988297851 1326 dbSNP
rs956853612 1329 dbSNP
rs150885449 1331 dbSNP
rs535918884 1333 dbSNP
rs1029763926 1344 dbSNP
rs1263877375 1345 dbSNP
rs1222980145 1353 dbSNP
rs1343627723 1354 dbSNP
rs976987345 1360 dbSNP
rs1419058253 1392 dbSNP
rs568474196 1393 dbSNP
rs901655178 1393 dbSNP
rs1173343256 1394 dbSNP
rs1281228480 1410 dbSNP
rs1017307956 1411 dbSNP
rs1007628037 1416 dbSNP
rs1374542253 1422 dbSNP
rs1429981879 1423 dbSNP
rs1299432464 1424 dbSNP
rs1334986331 1429 dbSNP
rs778236606 1430 dbSNP
rs182873121 1433 dbSNP
rs1406310604 1439 dbSNP
rs758021296 1440 dbSNP
rs1343215952 1445 dbSNP
rs1467759661 1451 dbSNP
rs372936745 1455 dbSNP
rs1160801694 1456 dbSNP
rs547907283 1458 dbSNP
rs1232686801 1462 dbSNP
rs1193464315 1463 dbSNP
rs889811739 1464 dbSNP
rs1172127688 1465 dbSNP
rs1462876385 1467 dbSNP
rs1243962512 1469 dbSNP
rs1461052853 1469 dbSNP
rs372446004 1470 dbSNP
rs752310549 1472 dbSNP
rs1302475878 1473 dbSNP
rs1203208628 1474 dbSNP
rs1310525341 1476 dbSNP
rs1365625997 1482 dbSNP
rs1286385880 1485 dbSNP
rs1049741372 1487 dbSNP
rs931594056 1489 dbSNP
rs1307079162 1493 dbSNP
rs775237168 1495 dbSNP
rs531961612 1496 dbSNP
rs564793921 1504 dbSNP
rs1247888968 1505 dbSNP
rs1037663252 1511 dbSNP
rs1383142319 1514 dbSNP
rs940191347 1515 dbSNP
rs1185081735 1532 dbSNP
rs1335685660 1534 dbSNP
rs1416950381 1543 dbSNP
rs1427548112 1544 dbSNP
rs1449931938 1553 dbSNP
rs1419366398 1557 dbSNP
rs1346487347 1560 dbSNP
rs1318352612 1567 dbSNP
rs1401846131 1570 dbSNP
rs552533649 1575 dbSNP
rs1157288442 1579 dbSNP
rs1446833437 1581 dbSNP
rs1386180025 1583 dbSNP
rs1183253920 1587 dbSNP
rs1229080003 1588 dbSNP
rs991938663 1596 dbSNP
rs11415280 1605 dbSNP
rs1232699103 1605 dbSNP
rs1269332060 1605 dbSNP
rs1332807118 1605 dbSNP
rs369350463 1605 dbSNP
rs398018494 1605 dbSNP
rs1485370112 1606 dbSNP
rs1188188521 1607 dbSNP
rs1259135220 1608 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 83445.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gagaucgcuccuaaGGUUGUAa 5'
                        ||||||| 
Target 5' ----------cacaCCAACAUg 3'
1 - 12
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001080555 | 3UTR | UUAAUGGGUGCAGCACACCAACAUGGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001080555 | 3UTR | AAUGGGUGCAGCACACCAACAUGGCACAUGUAUACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001080555 | 3UTR | AGUUAAUGGGUGCAGCACACCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001080555 | 3UTR | UUAAUGGGUGCAGCACACCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001080555 | 3UTR | AUGGGUGCAGCACACCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000396302.3 | 3UTR | CACACCAACAUGGCACAUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
204 hsa-miR-4781-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071728 CCNK cyclin K 2 2
MIRT184858 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT205881 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT218699 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2 2
MIRT223783 OXR1 oxidation resistance 1 2 2
MIRT242435 GAN gigaxonin 2 2
MIRT306825 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT334170 CCND1 cyclin D1 2 6
MIRT339617 TMPO thymopoietin 2 2
MIRT400371 C2ORF68 chromosome 2 open reading frame 68 2 2
MIRT445533 KIF1B kinesin family member 1B 2 4
MIRT450273 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450701 RORA RAR related orphan receptor A 2 2
MIRT451160 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT453775 NUCB1 nucleobindin 1 2 10
MIRT453884 IFRD1 interferon related developmental regulator 1 2 12
MIRT454238 OSBPL10 oxysterol binding protein like 10 2 9
MIRT458661 PAGR1 PAXIP1 associated glutamate rich protein 1 2 12
MIRT466948 STAU1 staufen double-stranded RNA binding protein 1 2 2
MIRT470278 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT471144 PHF19 PHD finger protein 19 2 2
MIRT471873 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT476739 FOXN2 forkhead box N2 2 2
MIRT480453 C16orf72 chromosome 16 open reading frame 72 2 6
MIRT482107 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483374 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT484063 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT496329 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT498659 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 4
MIRT498711 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499322 ZNF485 zinc finger protein 485 2 6
MIRT499711 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499767 CIRH1A UTP4, small subunit processome component 2 6
MIRT499912 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 8
MIRT504946 ZSWIM6 zinc finger SWIM-type containing 6 2 4
MIRT505377 TMEM154 transmembrane protein 154 2 4
MIRT508778 GSG1 germ cell associated 1 2 2
MIRT509793 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT512421 LAYN layilin 2 4
MIRT513321 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT513592 DCTN6 dynactin subunit 6 2 2
MIRT514785 RBM4B RNA binding motif protein 4B 2 2
MIRT514859 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515122 LMOD3 leiomodin 3 2 2
MIRT515271 CSNK1E casein kinase 1 epsilon 2 2
MIRT515594 FBXL13 F-box and leucine rich repeat protein 13 2 2
MIRT515880 PLXDC2 plexin domain containing 2 2 2
MIRT515908 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT515960 C9orf156 tRNA methyltransferase O 2 2
MIRT517210 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517330 ZNF347 zinc finger protein 347 2 2
MIRT517480 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517594 ZNF579 zinc finger protein 579 2 4
MIRT517676 TRIM72 tripartite motif containing 72 2 2
MIRT518215 TRMT10B tRNA methyltransferase 10B 2 2
MIRT518583 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT518777 ZFP14 ZFP14 zinc finger protein 2 2
MIRT519094 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 4
MIRT519112 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT519400 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519446 GLA galactosidase alpha 2 2
MIRT519476 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT519711 ZNF584 zinc finger protein 584 2 4
MIRT521409 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT521522 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT522652 MANEAL mannosidase endo-alpha like 2 2
MIRT523505 GMPS guanine monophosphate synthase 2 4
MIRT523795 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT524062 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524136 DMXL1 Dmx like 1 2 2
MIRT524192 DENND4C DENN domain containing 4C 2 4
MIRT525925 KIAA0391 KIAA0391 2 2
MIRT528021 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT528685 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT528769 CD1D CD1d molecule 2 2
MIRT529373 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529469 ZNF546 zinc finger protein 546 2 2
MIRT529641 ZNF621 zinc finger protein 621 2 2
MIRT530681 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT530752 GPR82 G protein-coupled receptor 82 2 2
MIRT531628 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT531649 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT532179 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT532219 CCDC117 coiled-coil domain containing 117 2 2
MIRT534238 SLC25A16 solute carrier family 25 member 16 2 4
MIRT539952 SLC30A5 solute carrier family 30 member 5 2 2
MIRT540179 MB21D1 Mab-21 domain containing 1 2 2
MIRT540466 ZNF71 zinc finger protein 71 2 2
MIRT540560 PPIC peptidylprolyl isomerase C 2 2
MIRT543265 ZNF662 zinc finger protein 662 2 2
MIRT543596 KIAA1549 KIAA1549 2 2
MIRT543971 RNF20 ring finger protein 20 2 2
MIRT544053 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544605 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT544679 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT547627 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT550668 TRAF1 TNF receptor associated factor 1 2 2
MIRT551533 EMB embigin 2 2
MIRT552443 ZNF449 zinc finger protein 449 2 2
MIRT559265 BAG4 BCL2 associated athanogene 4 2 4
MIRT562479 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT564211 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT565973 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT570524 SHH sonic hedgehog 2 2
MIRT575307 Osbpl10 oxysterol binding protein-like 10 2 6
MIRT618212 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT620115 HARBI1 harbinger transposase derived 1 2 2
MIRT624062 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT626083 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT629868 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630750 COG6 component of oligomeric golgi complex 6 2 2
MIRT631002 ZNF573 zinc finger protein 573 2 2
MIRT631100 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631290 SGSM1 small G protein signaling modulator 1 2 2
MIRT631337 CD300E CD300e molecule 2 2
MIRT631532 MYO6 myosin VI 2 2
MIRT631644 WDR91 WD repeat domain 91 2 4
MIRT632788 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633282 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633593 ABRACL ABRA C-terminal like 2 2
MIRT634074 PLIN3 perilipin 3 2 2
MIRT634163 YME1L1 YME1 like 1 ATPase 2 2
MIRT634257 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634679 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT638384 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638687 GCLM glutamate-cysteine ligase modifier subunit 2 2
MIRT640311 PRR13 proline rich 13 2 2
MIRT641132 NPHP3 nephrocystin 3 2 2
MIRT642315 FPR1 formyl peptide receptor 1 2 2
MIRT643703 KIAA0586 KIAA0586 2 2
MIRT644322 NFKBID NFKB inhibitor delta 2 2
MIRT645741 POLR3A RNA polymerase III subunit A 2 2
MIRT646975 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 2
MIRT648064 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648536 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT649294 NEK8 NIMA related kinase 8 2 2
MIRT650014 KLB klotho beta 2 2
MIRT650551 YIPF4 Yip1 domain family member 4 2 2
MIRT651796 UTP6 UTP6, small subunit processome component 2 2
MIRT652647 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653548 SLC38A7 solute carrier family 38 member 7 2 2
MIRT653895 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT655470 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT657764 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT659118 DENND6A DENN domain containing 6A 2 2
MIRT659377 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659836 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT659954 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT660258 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT663268 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT663766 ZNF285 zinc finger protein 285 2 2
MIRT666198 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT669763 ZNF101 zinc finger protein 101 2 4
MIRT669933 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT670007 GPR156 G protein-coupled receptor 156 2 4
MIRT670465 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670868 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671313 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671959 SPPL3 signal peptide peptidase like 3 2 2
MIRT672281 SHE Src homology 2 domain containing E 2 2
MIRT673654 CYCS cytochrome c, somatic 2 2
MIRT674063 ATXN3 ataxin 3 2 2
MIRT674423 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT674438 MIOX myo-inositol oxygenase 2 4
MIRT674483 BCL2L15 BCL2 like 15 2 2
MIRT675478 NUBPL nucleotide binding protein like 2 2
MIRT675648 TTPAL alpha tocopherol transfer protein like 2 2
MIRT675981 FAM126B family with sequence similarity 126 member B 2 2
MIRT676251 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT677652 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT682718 KIAA1456 KIAA1456 2 2
MIRT687545 MOB1B MOB kinase activator 1B 2 2
MIRT689620 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690035 CCDC90B coiled-coil domain containing 90B 2 2
MIRT691449 CXorf36 chromosome X open reading frame 36 2 2
MIRT691549 FLYWCH2 FLYWCH family member 2 2 2
MIRT691737 LARS leucyl-tRNA synthetase 2 2
MIRT692638 SUSD1 sushi domain containing 1 2 2
MIRT693866 IYD iodotyrosine deiodinase 2 2
MIRT693979 ZNF70 zinc finger protein 70 2 2
MIRT694150 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT695492 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695547 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT696023 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696402 CORO7 coronin 7 2 2
MIRT703028 HEATR5A HEAT repeat containing 5A 2 2
MIRT703559 FKBP14 FK506 binding protein 14 2 2
MIRT705036 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT705120 C4orf29 abhydrolase domain containing 18 2 2
MIRT706611 CYB5B cytochrome b5 type B 2 2
MIRT706635 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706730 RFK riboflavin kinase 2 2
MIRT706868 MAFF MAF bZIP transcription factor F 2 2
MIRT707020 RRP36 ribosomal RNA processing 36 2 2
MIRT707036 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707125 ZNF154 zinc finger protein 154 2 2
MIRT707390 SLC35F6 solute carrier family 35 member F6 2 2
MIRT708664 LYRM7 LYR motif containing 7 2 2
MIRT713010 BBX BBX, HMG-box containing 2 2
MIRT717314 TRAF3IP1 TRAF3 interacting protein 1 2 2
MIRT721912 C6orf201 chromosome 6 open reading frame 201 2 2
MIRT723050 YTHDC1 YTH domain containing 1 2 2
MIRT725038 NDUFAF7 NADH:ubiquinone oxidoreductase complex assembly factor 7 2 2
MIRT755316 SMAD5 SMAD family member 5 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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