miRTarBase - #MIRT508802


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pre-miRNA Information
pre-miRNA hsa-mir-3136   
Genomic Coordinates chr3: 69048958 - 69049035
Description Homo sapiens miR-3136 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3136-5p
Sequence 10| CUGACUGAAUAGGUAGGGUCAUU |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1478587998 4 dbSNP
rs912074637 12 dbSNP
rs1465866748 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MTPN   
Synonyms GCDP, V-1
Description myotrophin
Transcript NM_145808   
Expression
Putative miRNA Targets on MTPN
3'UTR of MTPN
(miRNA target sites are highlighted)		 
>MTPN|NM_145808|3'UTR
   1 TGGATGGATGGACTGATAACTCCGGAAGAATGACTCTCCTGTGGCCTCACACTGCTGCCTGTCTGTCTGTCACTCTCTAT
  81 CTGCCAGCTTCTTCAGCTAAATACTTTAAGAGGGGTGAGGGGAGAGAGAAATTCATAACAAATCCGACTACCAGAAAAAA
 161 AAAATTGTTTTGGAGGAGGGGCAAAAGGAACCATGATCAGGCTTTTACTGGGATTCCTGATCAAGTAAGCCTCTTCCCTT
 241 TCTAATAAAATATACACCTTATACCCAAGGGAGAGCAAAGACAAAATACACCAGTAACATTTGACCTTTTCAGCTCCCTA
 321 GCTAATTTATTAGATTGTGTTGAAGGTCTGATTCTACAAAGGCCAACTCTACATATTTGGTAGCCCTAACTGTCTGAGCA
 401 GTAGTGGCTGCTGTGATGTAAACTTAGGGTGCTGAGATAAGCAATTAGCTCTAGCCTTCTGCCTTAAGAATGCACTCTAC
 481 TGGGGATTTCCTGGCATAGTTAAGAGCGCTGCCTATAAGGTTGGTGACCAAATCTTTCCTCGGTGACTTTAAGCTTTATG
 561 TGAAAGCTTAGTTAAGGTGAGGAGGGGCACACTCCTAAATTGCTGGATGACTGAACTTTGGATTTTCTCTCCCCTTTCAC
 641 ATGGATTTCATGTCTCTTTAGATAAAACTGACTAGTTTTATTTATAAAATCTTAAGTTTTGGAAGTCTAAAGGAGAAACC
 721 ATTCCAGTATGCATATTTTTTTCTCCTCTAGATTCATACATTTATATAGCATTGAAACACTTTCAAACTCCTGCTGGTAG
 801 TAAAAGGGGATTTAAAAATAGAATCATAGCCATAAGCCTGTTAGTATCATATGAAGAGAGAACAGTTATCTTAGTACCTA
 881 TGGATTTTCTTTATTTGCTGTTTGAATGGATTGACCTTGGTTATGTGTTGAGAATTAAGGAACATTCTTTGAAATGCCTC
 961 TCTCAGACCCATCTTGGAGGCTGATTACTTACTGCACCAAAGCTATCACTGGGGTGAGATTTACTGTTTGGACAAATTTA
1041 GCCCCATCCCTTCAAAAATACACTTGTAACCAGGTTTCCCAGAGTTGTTGATAGGCTTCTGCTGAACATATGCCAACCCA
1121 CCTGCATAATATATTTTTGTTGCTTTTATAAATCATGCATTACATAAAGTGTGACAACTTCAAAATGTATTCTCTGTTCT
1201 TGGAATACAGTGCCCTAAAATGGTGTTCTTATGACCTGCAGAAAATATTTACACATATTTCCAAATATTTATTTCATGAG
1281 CAGTACAGCTAATTAAAATATATAAGCTTAAATTTTATATCTTACATTTAAAATATTAAGATTCCTTTGACTTGCCATCC
1361 ATATAAGCTTGCTAAAAATATTAAGACCAAGTCATGCAATAATTGAATGTACCTCAAATTTTTAGGGGAGGGTGGGTTAG
1441 GGACTGATACTCAGATTGTGGATAATAATTGAATTGGTTTTTAAAGGCAACATAGCATTCTACAGCAGGGTTAATCTATT
1521 ATCAAGAACAGTCACCCTGGTTAATAACAAGTTTTACTGATCAGTTGCTGGTTGGTTGGTTGGTTGGCATGTGGGTGTGT
1601 GGGTGTATAGGTGTGTGTGGGTGTGTGTGTGTATTTTTCCCCATGAGTCCTTTTTTTAATCCTGTGGCTTTTTCACTTAC
1681 AACTAGCCTAACCCTGTAATTTTCCTACATCCAAGAAAACAATCACAAAGTAGTGGTTTAAATACTTTGTTGTATTTGGC
1761 TAATTTTGCTGTCTTAATGCAGCCTATTAAGAGTTGGGTTAAAAATCAGTAATCAGTACTTTATTACATCACTGAACTAA
1841 AATATGGAGACATCCTCATTGAAAATGGAGGGCACTCTATCAGTCTATAACTATCAACGTAGTGCAACAGGGTGTTTTGA
1921 TACCTTTGTTTTCACCTCTTGACATAATGCTATTTAAAGGCTTGAATTTTTCCCTTTATATAATTTTCACCTTTACTTTC
2001 AAAGTGTTTTGTTGTAGTTGGCTATTGCAGAGAGTGCATTGTCCTATCATTCCTAAACCTGGTCTGCTTTCTACATTCAT
2081 GGTATGGAAACCATGTGATTCTTTGTACAGTTTATCCTGATGTTGCTTGTAATGCAGTAGAGGCTATTTCGCCTTCGCTT
2161 TTCTTTCTCGACCTTTTTGTAAACCCTATAATTATGAAGCGATTGCTTGAGAAAATAACATATAAACATAGAATAGAATA
2241 GACTGACCAAGATGGTTCACAGTTTCTTTTTTTAACTAGGTTATTTATAATGTATTTCTGAACCACTTGGCAGACAAATT
2321 CACAACACTTAATGTTCATATTTTGAGTAAAGGAAGCTAAAACCATGTTTGCTTTCTGGTACTACATGCATTAGCGAAAG
2401 GTTAAGTAAGTTTTGTTCTCCACTGAAGTAATACTTAACATCTCAGAAAAAATTTTGCATGTTCTGTAGTTTTGTATTAA
2481 ATCAGTCATTTCATATGCACTATATCAAGTACAAACAGGTAGTTTACCTGTTTATAGTAGTGTACTAACAAAGTCTCCCT
2561 TGCAGCTTCAGACTGTTATCTATAGGCTTATCGTTCAAATACAGCACTTGAATATCCCAAGTAGTTCTTCTACGCATAGC
2641 TCACCTTTCTAAACCCAGTTAAGCATGGAAGAGAGGTAGTAGGTAGGTGCAGTGTGTGGAAGCTGCAAACAAGTAGGCCT
2721 TTTATTCATTGATATCTTTTCCCAAGTACTGGATTTTAAATCTGTATGTATCTGTTTGATTTTTTTTTCTAATATTTCAG
2801 TTGAGCTGCTGTTTTCTTCCATGCAATATTGTATACTCAATTGTGTATAGAAGAAGCTGGTGAGAGTGCCCTCCTACATA
2881 AATAAGCAATTGCAGTGTTTTGCATGCAAAATATAAAAAATTTAAATTGTCCTGATTCTATTTTGTAAATGGAGAAACAA
2961 TCATATCTTTCTAAGCGGTAATGGAGGAAGACTAGTGCTTTGTGCATTTTGATATATTTGAGTTCATTTTTTCCACAATG
3041 TCATACTTTTGACGCAGTTGGGTTTCTCATAAGTATCCTAGTTCATGTACATCCGAATGCTAAATAATACTGTGTTTTAA
3121 GTTTTGTGTTGCAAGAACAAATGGAATAAACTTGAATTGTGCTACAGCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuacugggAUGGAUAAGUCAGUc 5'
                  ||:: | ||||||| 
Target 5' tagttttgTATTAAATCAGTCAt 3'
 2467 - 2489 151.00 -7.30
2 
miRNA  3' uuaCUGGGAUGGAUAAGUCAGuc 5'
             |:| ||  ||| ||||||  
Target 5' gagGGCACT--CTA-TCAGTCta 3'
 1868 - 1887 135.00 -11.70
3 
miRNA  3' uuacUGG-GAUGGAUA---AGUCAGUc 5'
              ||: ||:|||:|   || |||| 
Target 5' tcacACTGCTGCCTGTCTGTCTGTCAc 3'
 47 - 73 131.00 -14.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26565413 23 COSMIC
COSN20075964 77 COSMIC
COSN31509031 84 COSMIC
COSN31574342 96 COSMIC
COSN31515908 104 COSMIC
COSN1343186 115 COSMIC
COSN4893997 120 COSMIC
COSN16684471 124 COSMIC
COSN29537713 154 COSMIC
COSN28863133 155 COSMIC
COSN28852981 162 COSMIC
COSN30113144 209 COSMIC
COSN20075934 229 COSMIC
COSN30119826 413 COSMIC
COSN31523523 443 COSMIC
COSN31490420 479 COSMIC
COSN28682257 517 COSMIC
COSN31601197 542 COSMIC
COSN27125159 582 COSMIC
COSN15625019 649 COSMIC
COSN7961778 691 COSMIC
COSN15625018 720 COSMIC
COSN31577685 769 COSMIC
COSN30120787 867 COSMIC
COSN31608630 886 COSMIC
COSN30134757 889 COSMIC
COSN31523985 1079 COSMIC
COSN15673979 1113 COSMIC
COSN31485557 1120 COSMIC
COSN30526867 1243 COSMIC
COSN26676991 1252 COSMIC
COSN31490256 1283 COSMIC
COSN30122829 1355 COSMIC
COSN17405471 1559 COSMIC
COSN30529021 1607 COSMIC
COSN30129281 1702 COSMIC
COSN30532469 1743 COSMIC
COSN30123591 1782 COSMIC
COSN28758491 1877 COSMIC
COSN31480211 1881 COSMIC
COSN31962856 1912 COSMIC
COSN30527742 1941 COSMIC
COSN29714734 1944 COSMIC
COSN30142707 1954 COSMIC
COSN30142077 1974 COSMIC
COSN30114821 2009 COSMIC
COSN31610940 2016 COSMIC
COSN31962855 2023 COSMIC
COSN15625017 2048 COSMIC
COSN31556136 2099 COSMIC
COSM9448145 2168 COSMIC
COSM7274552 2188 COSMIC
COSM1622378 2267 COSMIC
COSM8993655 2304 COSMIC
COSM7568617 2317 COSMIC
COSM4920189 2336 COSMIC
COSM9303378 2362 COSMIC
COSN30531394 2395 COSMIC
COSN30684767 2453 COSMIC
COSM9377041 2506 COSMIC
COSM7326524 2532 COSMIC
COSM7214018 2537 COSMIC
COSM8866115 2544 COSMIC
COSM8659540 2556 COSMIC
COSM7242408 2569 COSMIC
COSM8491584 2588 COSMIC
COSM5738176 2601 COSMIC
COSM9194230 2611 COSMIC
COSM9258459 2633 COSMIC
COSM8931114 2634 COSMIC
COSN31587113 2690 COSMIC
COSN31547066 2785 COSMIC
COSN31533828 2809 COSMIC
COSN24523816 2847 COSMIC
COSN28968769 3011 COSMIC
COSN30164822 3051 COSMIC
COSN31557088 3054 COSMIC
COSN9830910 3056 COSMIC
COSN31549104 3066 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1288035900 3 dbSNP
rs754750494 7 dbSNP
rs1294638204 9 dbSNP
rs750703011 12 dbSNP
rs778945321 13 dbSNP
rs781238914 14 dbSNP
rs757388998 15 dbSNP
rs1288566241 16 dbSNP
rs1319110665 18 dbSNP
rs1400963794 20 dbSNP
rs140181756 23 dbSNP
rs1311582686 24 dbSNP
rs764710023 28 dbSNP
rs763623933 37 dbSNP
rs367983955 38 dbSNP
rs1434416990 41 dbSNP
rs1257247006 46 dbSNP
rs563407495 56 dbSNP
rs1272914419 58 dbSNP
rs190658036 62 dbSNP
rs1225807787 67 dbSNP
rs745519268 74 dbSNP
rs147149661 78 dbSNP
rs1157930343 79 dbSNP
rs754512125 79 dbSNP
rs997913376 86 dbSNP
rs58441290 96 dbSNP
rs778662105 99 dbSNP
rs989841735 100 dbSNP
rs1402360149 106 dbSNP
rs1171579009 115 dbSNP
rs373787562 121 dbSNP
rs1434980671 122 dbSNP
rs1314281200 129 dbSNP
rs1333494356 132 dbSNP
rs1017948573 135 dbSNP
rs370942520 137 dbSNP
rs1279628956 139 dbSNP
rs1030841748 143 dbSNP
rs1232719618 144 dbSNP
rs113407154 145 dbSNP
rs889282992 150 dbSNP
rs1309815158 151 dbSNP
rs1410331695 152 dbSNP
rs1213305765 153 dbSNP
rs1369796824 154 dbSNP
rs1271061983 155 dbSNP
rs1305963894 155 dbSNP
rs1467339934 157 dbSNP
rs535898923 158 dbSNP
rs1471141423 164 dbSNP
rs1025157116 165 dbSNP
rs1191626382 165 dbSNP
rs1435039969 170 dbSNP
rs1011983159 171 dbSNP
rs1393969879 172 dbSNP
rs1408999905 173 dbSNP
rs575446620 178 dbSNP
rs1329007661 182 dbSNP
rs1355746538 195 dbSNP
rs573249972 200 dbSNP
rs1431552615 209 dbSNP
rs946947473 222 dbSNP
rs1183609878 229 dbSNP
rs1372182828 229 dbSNP
rs892492999 236 dbSNP
rs143388884 244 dbSNP
rs1250161504 250 dbSNP
rs1268771789 253 dbSNP
rs942144664 269 dbSNP
rs886696355 270 dbSNP
rs539626020 273 dbSNP
rs933321361 275 dbSNP
rs756861400 284 dbSNP
rs1483753209 289 dbSNP
rs542506190 292 dbSNP
rs975257368 301 dbSNP
rs746408135 304 dbSNP
rs928041662 305 dbSNP
rs1200810393 314 dbSNP
rs1371109983 318 dbSNP
rs571048635 329 dbSNP
rs1208947749 339 dbSNP
rs908152621 344 dbSNP
rs186618888 346 dbSNP
rs1395924152 356 dbSNP
rs780141951 366 dbSNP
rs909697510 370 dbSNP
rs989335241 373 dbSNP
rs182797391 377 dbSNP
rs1332773373 379 dbSNP
rs984083511 381 dbSNP
rs1232821349 384 dbSNP
rs951354436 391 dbSNP
rs1030892338 392 dbSNP
rs957827455 392 dbSNP
rs58850660 394 dbSNP
rs1207067658 397 dbSNP
rs1025534191 398 dbSNP
rs976398588 410 dbSNP
rs1171539606 411 dbSNP
rs373121925 413 dbSNP
rs1286332070 418 dbSNP
rs964978998 420 dbSNP
rs1018020242 424 dbSNP
rs568458753 427 dbSNP
rs547770685 429 dbSNP
rs113570365 430 dbSNP
rs1264961807 434 dbSNP
rs528108428 444 dbSNP
rs1012445153 446 dbSNP
rs559161753 459 dbSNP
rs1417910917 474 dbSNP
rs894904725 475 dbSNP
rs1022869053 476 dbSNP
rs1016391051 479 dbSNP
rs879198336 490 dbSNP
rs1011052473 495 dbSNP
rs892725405 496 dbSNP
rs1383064424 499 dbSNP
rs1052653698 500 dbSNP
rs1320689660 508 dbSNP
rs1160004615 509 dbSNP
rs753329535 511 dbSNP
rs939336498 513 dbSNP
rs906529727 515 dbSNP
rs1294030036 521 dbSNP
rs552270220 524 dbSNP
rs933541731 528 dbSNP
rs1410428924 531 dbSNP
rs1205556514 535 dbSNP
rs148433068 542 dbSNP
rs1484507092 545 dbSNP
rs1186729651 553 dbSNP
rs1257627824 554 dbSNP
rs1424982489 566 dbSNP
rs1180292417 571 dbSNP
rs1424795544 576 dbSNP
rs756300010 592 dbSNP
rs1454751412 593 dbSNP
rs1039026326 598 dbSNP
rs909739315 600 dbSNP
rs943330632 603 dbSNP
rs1434375440 628 dbSNP
rs914664711 629 dbSNP
rs746241284 633 dbSNP
rs1357465776 650 dbSNP
rs990168406 652 dbSNP
rs763639303 669 dbSNP
rs1306362224 675 dbSNP
rs563508328 679 dbSNP
rs755499554 691 dbSNP
rs1482075490 693 dbSNP
rs1239636897 701 dbSNP
rs1287933688 702 dbSNP
rs1269566602 707 dbSNP
rs1345407849 715 dbSNP
rs1209724874 716 dbSNP
rs984377257 726 dbSNP
rs936519375 727 dbSNP
rs929796376 729 dbSNP
rs918504901 732 dbSNP
rs543696245 733 dbSNP
rs1420248118 735 dbSNP
rs1266207743 737 dbSNP
rs1393683902 743 dbSNP
rs1454067794 746 dbSNP
rs73445821 748 dbSNP
rs1460634358 755 dbSNP
rs1297720741 774 dbSNP
rs1397249605 784 dbSNP
rs1340905956 793 dbSNP
rs76884280 799 dbSNP
rs1394000308 804 dbSNP
rs1367635706 808 dbSNP
rs990505920 818 dbSNP
rs1017883728 823 dbSNP
rs1368520121 829 dbSNP
rs1321409258 834 dbSNP
rs1233377473 835 dbSNP
rs1303859253 843 dbSNP
rs752107525 844 dbSNP
rs1313639182 846 dbSNP
rs1434498789 851 dbSNP
rs542231716 852 dbSNP
rs1201969813 858 dbSNP
rs1250301613 858 dbSNP
rs985201853 864 dbSNP
rs959276926 877 dbSNP
rs1251609417 878 dbSNP
rs1386498612 885 dbSNP
rs1194703992 887 dbSNP
rs968893250 892 dbSNP
rs551105019 893 dbSNP
rs116867961 897 dbSNP
rs1011499626 900 dbSNP
rs956857219 902 dbSNP
rs1031298092 910 dbSNP
rs1003789053 919 dbSNP
rs1451670066 919 dbSNP
rs906562259 924 dbSNP
rs1467189259 940 dbSNP
rs1323967753 961 dbSNP
rs1392273289 962 dbSNP
rs190153598 974 dbSNP
rs539940024 978 dbSNP
rs1293937677 988 dbSNP
rs577317208 992 dbSNP
rs1464088684 999 dbSNP
rs557127980 1005 dbSNP
rs1294340612 1008 dbSNP
rs879661026 1012 dbSNP
rs1220015669 1014 dbSNP
rs527806510 1021 dbSNP
rs888540189 1026 dbSNP
rs557329101 1029 dbSNP
rs149352698 1031 dbSNP
rs1048439073 1039 dbSNP
rs144474092 1054 dbSNP
rs1186149117 1060 dbSNP
rs568397305 1061 dbSNP
rs1478917498 1062 dbSNP
rs1343989693 1063 dbSNP
rs1162938393 1066 dbSNP
rs1054496474 1068 dbSNP
rs934725772 1068 dbSNP
rs1165336774 1070 dbSNP
rs923813808 1078 dbSNP
rs1428305540 1079 dbSNP
rs1288071822 1082 dbSNP
rs1298656205 1084 dbSNP
rs1042211529 1090 dbSNP
rs1040970118 1091 dbSNP
rs1290934885 1095 dbSNP
rs750663571 1096 dbSNP
rs554870743 1098 dbSNP
rs1229406099 1107 dbSNP
rs1292564184 1109 dbSNP
rs911116342 1117 dbSNP
rs1315652627 1123 dbSNP
rs985105955 1126 dbSNP
rs1261657423 1140 dbSNP
rs534294866 1156 dbSNP
rs1489417424 1159 dbSNP
rs1186028839 1181 dbSNP
rs1390676386 1188 dbSNP
rs1256930039 1190 dbSNP
rs1475544473 1196 dbSNP
rs565684931 1203 dbSNP
rs1182383797 1209 dbSNP
rs1415961274 1224 dbSNP
rs917861206 1228 dbSNP
rs968378865 1232 dbSNP
rs1360883427 1252 dbSNP
rs578059846 1261 dbSNP
rs532237862 1262 dbSNP
rs957125263 1265 dbSNP
rs984578953 1283 dbSNP
rs1285434965 1288 dbSNP
rs950440972 1292 dbSNP
rs1448497627 1301 dbSNP
rs1310489691 1328 dbSNP
rs1026033830 1351 dbSNP
rs997687065 1352 dbSNP
rs966587146 1374 dbSNP
rs149298461 1378 dbSNP
rs1443214237 1387 dbSNP
rs776622441 1388 dbSNP
rs1008209745 1395 dbSNP
rs1200388353 1409 dbSNP
rs17168525 1412 dbSNP
rs529952411 1425 dbSNP
rs561148315 1426 dbSNP
rs1266625453 1430 dbSNP
rs1220114999 1447 dbSNP
rs970986439 1450 dbSNP
rs1483939258 1455 dbSNP
rs1171517842 1470 dbSNP
rs1374534082 1474 dbSNP
rs1414659641 1482 dbSNP
rs1335668496 1495 dbSNP
rs535260635 1503 dbSNP
rs1012666891 1504 dbSNP
rs1310562536 1505 dbSNP
rs1379582263 1508 dbSNP
rs1232647079 1513 dbSNP
rs888412846 1518 dbSNP
rs1303117559 1520 dbSNP
rs1048993629 1521 dbSNP
rs1275067416 1522 dbSNP
rs1054381617 1531 dbSNP
rs1270995097 1535 dbSNP
rs1437249285 1539 dbSNP
rs186259397 1544 dbSNP
rs715156 1558 dbSNP
rs1234099978 1563 dbSNP
rs181472824 1565 dbSNP
rs1299881509 1567 dbSNP
rs138614106 1570 dbSNP
rs1412206189 1571 dbSNP
rs867181056 1572 dbSNP
rs911145773 1576 dbSNP
rs1408800638 1581 dbSNP
rs1055074729 1588 dbSNP
rs1331418881 1588 dbSNP
rs917729504 1588 dbSNP
rs1371634067 1596 dbSNP
rs577256511 1597 dbSNP
rs1438888409 1601 dbSNP
rs557064620 1602 dbSNP
rs1338970477 1603 dbSNP
rs1219402560 1605 dbSNP
rs1260042284 1607 dbSNP
rs745619467 1607 dbSNP
rs1319979777 1613 dbSNP
rs1049627018 1615 dbSNP
rs937923796 1616 dbSNP
rs1442799409 1617 dbSNP
rs1266445920 1620 dbSNP
rs1307816211 1620 dbSNP
rs1451898464 1620 dbSNP
rs908913342 1621 dbSNP
rs1240057374 1622 dbSNP
rs376765689 1622 dbSNP
rs574713346 1623 dbSNP
rs1425118327 1624 dbSNP
rs116648775 1625 dbSNP
rs1391923971 1625 dbSNP
rs985329096 1625 dbSNP
rs1292830037 1626 dbSNP
rs1478092407 1628 dbSNP
rs1376549278 1630 dbSNP
rs1018168934 1633 dbSNP
rs1400814136 1633 dbSNP
rs966263721 1633 dbSNP
rs1197255771 1635 dbSNP
rs1231383605 1643 dbSNP
rs748960752 1643 dbSNP
rs986436850 1644 dbSNP
rs1211484823 1645 dbSNP
rs1281841561 1648 dbSNP
rs1487783584 1653 dbSNP
rs1473528100 1662 dbSNP
rs955797815 1664 dbSNP
rs1193864789 1666 dbSNP
rs1473908505 1680 dbSNP
rs928345641 1680 dbSNP
rs1459871279 1682 dbSNP
rs1204210638 1685 dbSNP
rs1384639779 1686 dbSNP
rs1420572230 1692 dbSNP
rs1300200534 1695 dbSNP
rs1456348438 1698 dbSNP
rs1373721424 1701 dbSNP
rs1414306592 1706 dbSNP
rs1313523518 1707 dbSNP
rs982287625 1709 dbSNP
rs1033186447 1711 dbSNP
rs1277574721 1712 dbSNP
rs10231781 1714 dbSNP
rs998832236 1722 dbSNP
rs1216906513 1724 dbSNP
rs1287792348 1727 dbSNP
rs1484484745 1729 dbSNP
rs777217842 1730 dbSNP
rs1199429358 1731 dbSNP
rs1435827644 1732 dbSNP
rs774620970 1748 dbSNP
rs1024375570 1749 dbSNP
rs1380080869 1752 dbSNP
rs144765269 1752 dbSNP
rs1201230675 1753 dbSNP
rs1344474981 1765 dbSNP
rs190652486 1768 dbSNP
rs991082387 1770 dbSNP
rs952853734 1780 dbSNP
rs1465702520 1783 dbSNP
rs755588367 1786 dbSNP
rs187080599 1793 dbSNP
rs937826779 1796 dbSNP
rs887695715 1797 dbSNP
rs1048982790 1806 dbSNP
rs1376049745 1807 dbSNP
rs928967012 1810 dbSNP
rs1240692094 1814 dbSNP
rs1288216532 1816 dbSNP
rs918912735 1819 dbSNP
rs752023600 1821 dbSNP
rs1232016295 1822 dbSNP
rs1408417599 1830 dbSNP
rs1342603690 1831 dbSNP
rs538298382 1837 dbSNP
rs780487062 1841 dbSNP
rs1483908361 1844 dbSNP
rs569753569 1845 dbSNP
rs1238161450 1852 dbSNP
rs1414665461 1858 dbSNP
rs1180940053 1862 dbSNP
rs1400948743 1873 dbSNP
rs1173637581 1879 dbSNP
rs1393630287 1879 dbSNP
rs549932892 1882 dbSNP
rs375237856 1887 dbSNP
rs897260666 1890 dbSNP
rs529888202 1893 dbSNP
rs1412664895 1895 dbSNP
rs986709080 1898 dbSNP
rs1399516069 1899 dbSNP
rs372479764 1903 dbSNP
rs1468458053 1907 dbSNP
rs752187555 1912 dbSNP
rs1365175818 1914 dbSNP
rs1385881863 1922 dbSNP
rs1188590828 1935 dbSNP
rs957512124 1936 dbSNP
rs567486648 1941 dbSNP
rs1224692115 1943 dbSNP
rs977630668 1944 dbSNP
rs889615096 1952 dbSNP
rs1256834707 1957 dbSNP
rs1319268726 1959 dbSNP
rs547336678 1960 dbSNP
rs1251551344 1966 dbSNP
rs1488319649 1975 dbSNP
rs947310394 1979 dbSNP
rs1210694545 1980 dbSNP
rs1426931986 1982 dbSNP
rs1193107594 1988 dbSNP
rs1024727695 1990 dbSNP
rs527577047 1994 dbSNP
rs892815337 1997 dbSNP
rs1052805736 2009 dbSNP
rs934285985 2011 dbSNP
rs928375129 2019 dbSNP
rs981146549 2024 dbSNP
rs1172649616 2033 dbSNP
rs142695832 2037 dbSNP
rs1347914624 2039 dbSNP
rs1457269329 2040 dbSNP
rs1293890083 2043 dbSNP
rs1369334219 2044 dbSNP
rs28373414 2058 dbSNP
rs1318273886 2063 dbSNP
rs1277042154 2066 dbSNP
rs1340550061 2069 dbSNP
rs1221006491 2079 dbSNP
rs1416918731 2081 dbSNP
rs532426759 2084 dbSNP
rs1478022767 2093 dbSNP
rs1264990319 2099 dbSNP
rs1319153637 2101 dbSNP
rs1208470328 2104 dbSNP
rs1482864514 2105 dbSNP
rs1256540868 2110 dbSNP
rs1264004915 2112 dbSNP
rs991504678 2114 dbSNP
rs1305881644 2135 dbSNP
rs1277806415 2137 dbSNP
rs1478811088 2138 dbSNP
rs1219543840 2139 dbSNP
rs1411622264 2147 dbSNP
rs1342621785 2150 dbSNP
rs764812830 2151 dbSNP
rs1351351425 2156 dbSNP
rs17168524 2157 dbSNP
rs1380463037 2159 dbSNP
rs79341735 2160 dbSNP
rs770445960 2162 dbSNP
rs1352329818 2163 dbSNP
rs1169498264 2165 dbSNP
rs1019696470 2166 dbSNP
rs1425368917 2168 dbSNP
rs1008259244 2169 dbSNP
rs889646195 2170 dbSNP
rs574651964 2172 dbSNP
rs1217416048 2173 dbSNP
rs1183599634 2177 dbSNP
rs1479693670 2179 dbSNP
rs750824984 2181 dbSNP
rs868338551 2182 dbSNP
rs765561252 2188 dbSNP
rs993396344 2190 dbSNP
rs1320217251 2193 dbSNP
rs772645815 2194 dbSNP
rs1216181246 2196 dbSNP
rs1244485971 2200 dbSNP
rs771563465 2201 dbSNP
rs1315429639 2202 dbSNP
rs1390225517 2212 dbSNP
rs897533405 2214 dbSNP
rs1330042660 2220 dbSNP
rs1446917124 2223 dbSNP
rs1182333851 2227 dbSNP
rs1040435915 2228 dbSNP
rs1361489662 2231 dbSNP
rs554745929 2231 dbSNP
rs893065790 2233 dbSNP
rs774245442 2234 dbSNP
rs1162402211 2239 dbSNP
rs1457216514 2241 dbSNP
rs1331656758 2243 dbSNP
rs1368900972 2243 dbSNP
rs541311208 2245 dbSNP
rs1053409705 2246 dbSNP
rs572690619 2252 dbSNP
rs559021936 2253 dbSNP
rs1449403505 2254 dbSNP
rs1459181533 2260 dbSNP
rs1251338254 2261 dbSNP
rs1209537375 2262 dbSNP
rs755223313 2269 dbSNP
rs906863827 2270 dbSNP
rs1239961621 2274 dbSNP
rs538608893 2274 dbSNP
rs749653866 2274 dbSNP
rs1227581696 2276 dbSNP
rs1357480902 2279 dbSNP
rs759182707 2280 dbSNP
rs1237373676 2287 dbSNP
rs910313596 2290 dbSNP
rs1310693332 2292 dbSNP
rs1433105294 2306 dbSNP
rs1217637634 2307 dbSNP
rs1240206704 2308 dbSNP
rs757361865 2310 dbSNP
rs747115717 2312 dbSNP
rs1302601778 2313 dbSNP
rs1443006455 2321 dbSNP
rs576130149 2325 dbSNP
rs948434677 2329 dbSNP
rs1295024921 2331 dbSNP
rs1456364870 2332 dbSNP
rs778059229 2338 dbSNP
rs761997650 2341 dbSNP
rs1159218102 2345 dbSNP
rs758531722 2347 dbSNP
rs753298142 2351 dbSNP
rs1198266127 2357 dbSNP
rs1452363537 2359 dbSNP
rs1441200779 2364 dbSNP
rs1269765757 2373 dbSNP
rs1203733678 2374 dbSNP
rs776325498 2382 dbSNP
rs765800907 2383 dbSNP
rs1287367332 2390 dbSNP
rs1219512008 2395 dbSNP
rs755395055 2396 dbSNP
rs1420623076 2400 dbSNP
rs1332488126 2401 dbSNP
rs1379522835 2403 dbSNP
rs1434582815 2405 dbSNP
rs754098866 2406 dbSNP
rs1274422587 2409 dbSNP
rs1231923532 2412 dbSNP
rs138105786 2418 dbSNP
rs1256214338 2419 dbSNP
rs1316018276 2422 dbSNP
rs1188703875 2427 dbSNP
rs1331273548 2433 dbSNP
rs766064089 2434 dbSNP
rs536364619 2439 dbSNP
rs961393954 2442 dbSNP
rs554773111 2448 dbSNP
rs1196467259 2453 dbSNP
rs1421378107 2453 dbSNP
rs772833926 2455 dbSNP
rs760445256 2457 dbSNP
rs73722917 2465 dbSNP
rs773198564 2466 dbSNP
rs1028797521 2468 dbSNP
rs1379559218 2469 dbSNP
rs1465589189 2480 dbSNP
rs1011415836 2484 dbSNP
rs1005623944 2485 dbSNP
rs1191390018 2486 dbSNP
rs1477693368 2488 dbSNP
rs1323303471 2489 dbSNP
rs1331952301 2493 dbSNP
rs1264279552 2495 dbSNP
rs1219256838 2497 dbSNP
rs760749367 2500 dbSNP
rs1278560106 2502 dbSNP
rs1199363475 2504 dbSNP
rs1345156261 2513 dbSNP
rs1257390026 2515 dbSNP
rs951880192 2519 dbSNP
rs1339459682 2522 dbSNP
rs1278528638 2525 dbSNP
rs774302462 2534 dbSNP
rs547558759 2537 dbSNP
rs1031625533 2539 dbSNP
rs533779039 2540 dbSNP
rs1027486531 2544 dbSNP
rs780443461 2546 dbSNP
rs749121506 2550 dbSNP
rs571494756 2555 dbSNP
rs1207884917 2559 dbSNP
rs1168643598 2565 dbSNP
rs775321523 2566 dbSNP
rs906895046 2571 dbSNP
rs897743523 2574 dbSNP
rs145651438 2578 dbSNP
rs747244947 2579 dbSNP
rs1224201578 2584 dbSNP
rs1260409513 2592 dbSNP
rs778112516 2593 dbSNP
rs888775091 2596 dbSNP
rs1050624019 2601 dbSNP
rs570204118 2616 dbSNP
rs78834486 2617 dbSNP
rs759525969 2619 dbSNP
rs1306281245 2632 dbSNP
rs931538111 2633 dbSNP
rs1196212333 2634 dbSNP
rs1316877891 2636 dbSNP
rs148637690 2641 dbSNP
rs917506473 2642 dbSNP
rs1354078778 2649 dbSNP
rs1242453620 2653 dbSNP
rs563350626 2655 dbSNP
rs1448597153 2658 dbSNP
rs1283413119 2663 dbSNP
rs1342204390 2664 dbSNP
rs774346689 2665 dbSNP
rs1247730187 2666 dbSNP
rs1446166493 2666 dbSNP
rs920080779 2667 dbSNP
rs1037274849 2676 dbSNP
rs940260310 2677 dbSNP
rs1173139247 2678 dbSNP
rs1487754038 2682 dbSNP
rs1216750838 2683 dbSNP
rs1176632470 2689 dbSNP
rs766708102 2693 dbSNP
rs11538658 2694 dbSNP
rs770847858 2698 dbSNP
rs1413594337 2702 dbSNP
rs1168566711 2717 dbSNP
rs750391935 2718 dbSNP
rs1187380574 2719 dbSNP
rs1369427487 2723 dbSNP
rs1425947835 2728 dbSNP
rs1446885073 2730 dbSNP
rs748900554 2732 dbSNP
rs1157227730 2735 dbSNP
rs1379962418 2740 dbSNP
rs549816805 2743 dbSNP
rs1420515527 2745 dbSNP
rs1479745614 2756 dbSNP
rs1254522754 2764 dbSNP
rs993064300 2765 dbSNP
rs1400104709 2768 dbSNP
rs1183383648 2778 dbSNP
rs958984848 2779 dbSNP
rs927295537 2780 dbSNP
rs1340974071 2783 dbSNP
rs986775178 2788 dbSNP
rs3832468 2789 dbSNP
rs397840735 2789 dbSNP
rs984243849 2789 dbSNP
rs1240373471 2792 dbSNP
rs952764777 2795 dbSNP
rs1250450887 2813 dbSNP
rs3210730 2818 dbSNP
rs1025699027 2820 dbSNP
rs1199375726 2821 dbSNP
rs1257567159 2821 dbSNP
rs993332471 2831 dbSNP
rs954148141 2841 dbSNP
rs1313500337 2857 dbSNP
rs1278708394 2862 dbSNP
rs961876569 2868 dbSNP
rs1440580656 2870 dbSNP
rs1161470074 2876 dbSNP
rs1343577408 2883 dbSNP
rs777429931 2892 dbSNP
rs769213429 2895 dbSNP
rs75053719 2907 dbSNP
rs140429497 2920 dbSNP
rs1454488026 2922 dbSNP
rs957259382 2927 dbSNP
rs1410239174 2929 dbSNP
rs1329090383 2932 dbSNP
rs1375791502 2938 dbSNP
rs541599128 2945 dbSNP
rs888819500 2949 dbSNP
rs1328994207 2960 dbSNP
rs1031494448 2963 dbSNP
rs1256053831 2975 dbSNP
rs999786118 2976 dbSNP
rs180979561 2977 dbSNP
rs189320773 2978 dbSNP
rs1265610503 2981 dbSNP
rs1432786871 2988 dbSNP
rs1199731508 2996 dbSNP
rs1359893549 3001 dbSNP
rs904285867 3006 dbSNP
rs971319310 3007 dbSNP
rs1024197616 3012 dbSNP
rs1168382476 3013 dbSNP
rs1399448400 3015 dbSNP
rs1414881817 3020 dbSNP
rs1045880 3035 dbSNP
rs771927367 3038 dbSNP
rs1388196522 3040 dbSNP
rs1472495326 3050 dbSNP
rs894131150 3053 dbSNP
rs1175183684 3054 dbSNP
rs1048838876 3055 dbSNP
rs895970951 3061 dbSNP
rs1057510078 3062 dbSNP
rs994983869 3067 dbSNP
rs1264021481 3069 dbSNP
rs937602856 3071 dbSNP
rs1210592193 3077 dbSNP
rs868492768 3084 dbSNP
rs1484029543 3088 dbSNP
rs898688390 3094 dbSNP
rs1476918131 3095 dbSNP
rs984128876 3111 dbSNP
rs1422880474 3116 dbSNP
rs1195159077 3128 dbSNP
rs1237634453 3133 dbSNP
rs1429027590 3143 dbSNP
rs1202508209 3152 dbSNP
rs1037178363 3162 dbSNP
rs1172299156 3163 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 136319.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 136319.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 136319.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000393085.3 | 3UTR | ucauuucauaugcacuauaucaag
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000393085.3 | 3UTR | UUCUGUAGUUUUGUauuaaau
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000393085.3 | 3UTR | ucauuucauaugcacuauaucaag
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
84 hsa-miR-3136-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081899 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT185493 SRP9 signal recognition particle 9 2 2
MIRT207226 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT246179 TXNIP thioredoxin interacting protein 2 4
MIRT347685 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT444157 ZNF701 zinc finger protein 701 2 2
MIRT444505 ZNF525 zinc finger protein 525 2 2
MIRT444683 NDOR1 NADPH dependent diflavin oxidoreductase 1 2 2
MIRT445131 CMTM4 CKLF like MARVEL transmembrane domain containing 4 2 2
MIRT446184 FGF1 fibroblast growth factor 1 2 2
MIRT447946 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449366 ANTXR2 anthrax toxin receptor 2 2 2
MIRT449774 SULF2 sulfatase 2 2 2
MIRT450096 ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 2 2
MIRT450903 CADM2 cell adhesion molecule 2 2 4
MIRT455645 YARS tyrosyl-tRNA synthetase 2 2
MIRT465135 TSC22D2 TSC22 domain family member 2 2 2
MIRT476177 GOLGA8A golgin A8 family member A 2 8
MIRT483978 PANK1 pantothenate kinase 1 2 10
MIRT497016 INO80B INO80 complex subunit B 2 2
MIRT497450 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT497626 ZNF576 zinc finger protein 576 2 2
MIRT498187 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT504036 TOMM5 translocase of outer mitochondrial membrane 5 2 2
MIRT507106 GOLGA8B golgin A8 family member B 2 4
MIRT507900 CALM2 calmodulin 2 2 6
MIRT508802 MTPN myotrophin 2 6
MIRT510407 ZNF268 zinc finger protein 268 2 4
MIRT516297 F8A2 coagulation factor VIII associated 2 2 2
MIRT516323 F8A3 coagulation factor VIII associated 3 2 2
MIRT528028 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529396 ICK intestinal cell kinase 2 2
MIRT534463 SCD stearoyl-CoA desaturase 2 4
MIRT535438 PDE4D phosphodiesterase 4D 2 2
MIRT538187 DBN1 drebrin 1 2 2
MIRT547386 MOB1A MOB kinase activator 1A 2 2
MIRT548180 FOXC1 forkhead box C1 2 2
MIRT561585 SKI SKI proto-oncogene 2 2
MIRT569449 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT573314 RFC5 replication factor C subunit 5 2 2
MIRT574762 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT575975 Fem1a feminization 1 homolog a (C. elegans) 2 5
MIRT575999 Zfp106 zinc finger protein 106 1 1
MIRT576277 Cd59a CD59a antigen 1 1
MIRT606772 KIAA0040 KIAA0040 2 5
MIRT606833 FEM1A fem-1 homolog A 2 7
MIRT608302 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT609269 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT609405 SLC25A45 solute carrier family 25 member 45 2 2
MIRT609603 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT610105 IL17REL interleukin 17 receptor E like 2 3
MIRT610327 SSX5 SSX family member 5 2 2
MIRT610610 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT611066 ZNF621 zinc finger protein 621 2 2
MIRT611492 ZNF440 zinc finger protein 440 2 2
MIRT611931 ZNF106 zinc finger protein 106 2 3
MIRT612239 MICALL1 MICAL like 1 2 2
MIRT612451 SMOC1 SPARC related modular calcium binding 1 2 4
MIRT612567 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit 2 2
MIRT613111 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT614946 KAT6B lysine acetyltransferase 6B 2 2
MIRT615100 BNC2 basonuclin 2 2 2
MIRT616424 FAM126B family with sequence similarity 126 member B 2 2
MIRT617839 FMO4 flavin containing monooxygenase 4 2 2
MIRT618499 HSPD1 heat shock protein family D (Hsp60) member 1 2 2
MIRT619230 FBXL4 F-box and leucine rich repeat protein 4 2 2
MIRT624202 DCP2 decapping mRNA 2 2 4
MIRT630405 MTX3 metaxin 3 2 2
MIRT640327 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT642779 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT654363 RBM23 RNA binding motif protein 23 2 2
MIRT654482 RANBP2 RAN binding protein 2 2 2
MIRT656336 MED28 mediator complex subunit 28 2 2
MIRT662856 UPF3A UPF3A, regulator of nonsense mediated mRNA decay 2 2
MIRT666894 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT669526 AP5M1 adaptor related protein complex 5 mu 1 subunit 2 2
MIRT671561 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT707042 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT717063 MTMR6 myotubularin related protein 6 2 2
MIRT717223 SH2D5 SH2 domain containing 5 2 2
MIRT719867 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
MIRT719967 RBX1 ring-box 1 2 2
MIRT723594 FKRP fukutin related protein 2 2
MIRT725081 VCPIP1 valosin containing protein interacting protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3136-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3136-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3136-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM17)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-3136-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM11)
hsa-miR-3136-5p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-3136-5p Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-3136-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3136-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)

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