pre-miRNA Information
pre-miRNA hsa-mir-371b   
Genomic Coordinates chr19: 53787677 - 53787742
Description Homo sapiens miR-371b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-371b-3p
Sequence 43| AAGUGCCCCCACAGUUUGAGUGC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 19 - 53787699 16594986 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1345825760 2 dbSNP
rs922443786 5 dbSNP
rs773769548 6 dbSNP
rs1034874198 8 dbSNP
rs772543475 9 dbSNP
rs1318684148 10 dbSNP
rs1004685112 12 dbSNP
rs1402402708 12 dbSNP
rs1427092890 13 dbSNP
rs1202234248 14 dbSNP
rs770734168 14 dbSNP
rs1428290628 15 dbSNP
rs1480794990 15 dbSNP
rs1049004182 17 dbSNP
rs1185000692 19 dbSNP
rs748499899 22 dbSNP
rs1487511363 23 dbSNP
Putative Targets

Gene Information
Gene Symbol FBXO6   
Synonyms FBG2, FBS2, FBX6, Fbx6b
Description F-box protein 6
Transcript NM_018438   
Expression
Putative miRNA Targets on FBXO6
3'UTR of FBXO6
(miRNA target sites are highlighted)
>FBXO6|NM_018438|3'UTR
   1 CAGCTGTCCATCCTGTGTCTGGGTCAGCCAGAGGTTCCTCCAGGCAGGAGCTGAGCATGGGGTGGGCAGTGAGGTCCCTG
  81 TACCAGCGACTCCTGCCCCGGTTCAACCCTACCAGCTTGTGGTAACTTACTGTCACATAGCTCTGACGTTTTGTTGTAAT
 161 AAATGTTTTCAGGCCGGGCACTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCAGGTGGATCACGAGGT
 241 CAGGAGATAGAGACCATCCTGGCCAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGG
 321 CGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGATGCAGAAGAATGGCGTGAACCCGGAAGGCAGAGCTTGCAGTGAGC
 401 CGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGGCTCATAAAATAATAATAATAATAAATAAATA
 481 AAAAATAAATGTTTTCAGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgugaGUUUGACA-----CC--CCCGUGAa 5'
               :||| |||     ||  ||||||| 
Target 5' tgtaaTAAA-TGTTTTCAGGCCGGGCACTg 3'
155 - 183 147.00 -14.70
2
miRNA  3' cgUGAGUUUGACACC-CCCGUGAa 5'
            :|| |:  || || ||||| | 
Target 5' gaGCTGAGCATGGGGTGGGCAGTg 3'
48 - 71 125.00 -13.90
3
miRNA  3' cgugaGUUUG-A-CACC-CCCGUGaa 5'
               |:::| | |||| ||||:|  
Target 5' ttagcCGGGCGTGGTGGCGGGCGCct 3'
304 - 329 118.00 -20.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30459943 20 COSMIC
COSN30109375 38 COSMIC
COSN31588330 101 COSMIC
COSN26885962 175 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs143630867 2 dbSNP
rs1430391587 8 dbSNP
rs1169724549 10 dbSNP
rs1435969330 12 dbSNP
rs1183751799 13 dbSNP
rs189443534 18 dbSNP
rs1315236764 19 dbSNP
rs752729384 19 dbSNP
rs1164567434 22 dbSNP
rs758508571 23 dbSNP
rs545081183 24 dbSNP
rs895915626 26 dbSNP
rs1015745669 27 dbSNP
rs1448240901 30 dbSNP
rs747248238 35 dbSNP
rs148091905 39 dbSNP
rs780913337 40 dbSNP
rs1331307056 42 dbSNP
rs1336655998 43 dbSNP
rs1014730742 46 dbSNP
rs1414545445 51 dbSNP
rs745782671 52 dbSNP
rs1359169313 55 dbSNP
rs1229991539 62 dbSNP
rs1298224656 64 dbSNP
rs762427268 66 dbSNP
rs1231761046 75 dbSNP
rs1027129825 78 dbSNP
rs28924119 88 dbSNP
rs990414701 89 dbSNP
rs1240597055 98 dbSNP
rs548891111 99 dbSNP
rs1466300437 100 dbSNP
rs750907289 101 dbSNP
rs1000360701 102 dbSNP
rs560831126 110 dbSNP
rs949300072 122 dbSNP
rs180671706 128 dbSNP
rs964272176 138 dbSNP
rs1166046950 139 dbSNP
rs1063301 142 dbSNP
rs936470578 148 dbSNP
rs571259638 149 dbSNP
rs28924118 157 dbSNP
rs1370125375 170 dbSNP
rs987588651 176 dbSNP
rs28924117 177 dbSNP
rs1348499089 179 dbSNP
rs1235035540 183 dbSNP
rs565719714 192 dbSNP
rs535852521 193 dbSNP
rs28924116 196 dbSNP
rs973240654 199 dbSNP
rs1252402575 201 dbSNP
rs1467221788 202 dbSNP
rs891157008 205 dbSNP
rs1201560217 211 dbSNP
rs1320883822 220 dbSNP
rs761044183 221 dbSNP
rs1157259943 229 dbSNP
rs1253233161 230 dbSNP
rs1008472187 234 dbSNP
rs1409269182 236 dbSNP
rs574356157 237 dbSNP
rs1204476205 238 dbSNP
rs187419277 239 dbSNP
rs897424483 240 dbSNP
rs1189234467 241 dbSNP
rs1384569018 248 dbSNP
rs1325436494 251 dbSNP
rs1055740796 255 dbSNP
rs879585824 270 dbSNP
rs1422424979 271 dbSNP
rs1229203862 272 dbSNP
rs372961686 281 dbSNP
rs1332694783 296 dbSNP
rs111774484 311 dbSNP
rs1374391772 313 dbSNP
rs1437799557 314 dbSNP
rs558082678 315 dbSNP
rs1254355328 322 dbSNP
rs541273807 323 dbSNP
rs990568020 324 dbSNP
rs1024576916 325 dbSNP
rs970393538 326 dbSNP
rs977795704 327 dbSNP
rs923830466 328 dbSNP
rs556752812 331 dbSNP
rs578102045 334 dbSNP
rs1409252915 345 dbSNP
rs1306142140 346 dbSNP
rs1416612738 347 dbSNP
rs1410223662 357 dbSNP
rs1292891414 362 dbSNP
rs1353872732 364 dbSNP
rs1247042719 371 dbSNP
rs1284903276 375 dbSNP
rs989683885 378 dbSNP
rs545528275 379 dbSNP
rs932705730 381 dbSNP
rs1277398218 385 dbSNP
rs1140272 386 dbSNP
rs1394002124 402 dbSNP
rs891230125 403 dbSNP
rs943996874 405 dbSNP
rs1037040003 407 dbSNP
rs532871466 409 dbSNP
rs572437507 410 dbSNP
rs1166578593 411 dbSNP
rs1049037786 420 dbSNP
rs895340703 430 dbSNP
rs954494281 431 dbSNP
rs1011936619 432 dbSNP
rs550926859 437 dbSNP
rs987148842 439 dbSNP
rs1015109775 440 dbSNP
rs970467151 441 dbSNP
rs1325857906 443 dbSNP
rs999558028 451 dbSNP
rs961806099 457 dbSNP
rs1030673884 470 dbSNP
rs1482497295 472 dbSNP
rs1278575364 480 dbSNP
rs1484462159 480 dbSNP
rs1201753715 483 dbSNP
rs958186852 484 dbSNP
rs1188601051 486 dbSNP
rs1445906028 488 dbSNP
rs1262837647 491 dbSNP
rs1391915153 498 dbSNP
rs1450059573 500 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 26270.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgugaguuugacaccCCCGUGAa 5'
                         ||||||| 
Target 5' ------------gccGGGCACUg 3'
1 - 11
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000376753.4 | 3UTR | GCCGGGCACUGUGGCUCACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
42 hsa-miR-371b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055410 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT065883 GDF11 growth differentiation factor 11 2 2
MIRT183507 BTG2 BTG anti-proliferation factor 2 2 2
MIRT277106 CDCA8 cell division cycle associated 8 2 2
MIRT300592 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT441361 ZNF75A zinc finger protein 75a 2 2
MIRT442692 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT443388 CHML CHM like, Rab escort protein 2 2 2
MIRT443571 EVX2 even-skipped homeobox 2 2 2
MIRT443671 FLT1 fms related tyrosine kinase 1 2 2
MIRT465524 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT492169 STAT3 signal transducer and activator of transcription 3 2 2
MIRT496992 TMEM231 transmembrane protein 231 2 2
MIRT509012 FBXO6 F-box protein 6 2 2
MIRT509766 NCAPD2 non-SMC condensin I complex subunit D2 2 2
MIRT514033 BNIP2 BCL2 interacting protein 2 2 2
MIRT524995 AFF1 AF4/FMR2 family member 1 2 10
MIRT529899 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT530045 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT534479 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT535065 PPP2R5D protein phosphatase 2 regulatory subunit B'delta 2 4
MIRT539151 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT540937 OIP5 Opa interacting protein 5 2 2
MIRT546360 SYNM synemin 2 2
MIRT553436 TPM3 tropomyosin 3 2 2
MIRT556278 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT564092 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT568376 ATXN1 ataxin 1 2 2
MIRT572255 ANKRD52 ankyrin repeat domain 52 2 2
MIRT572453 TRIM10 tripartite motif containing 10 2 2
MIRT610741 NUDT16 nudix hydrolase 16 2 4
MIRT622754 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT627220 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT629555 SPN sialophorin 2 2
MIRT640288 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT651922 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT684290 CDK9 cyclin dependent kinase 9 2 2
MIRT700230 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT702748 IGFBP3 insulin like growth factor binding protein 3 2 2
MIRT711110 TBC1D21 TBC1 domain family member 21 2 2
MIRT716402 SEPT5 septin 5 2 2
MIRT723677 CTC1 CST telomere replication complex component 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-371b Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-371b-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-371b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-371b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)

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