pre-miRNA Information | |
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pre-miRNA | hsa-mir-371b |
Genomic Coordinates | chr19: 53787677 - 53787742 |
Description | Homo sapiens miR-371b stem-loop |
Comment | None |
RNA Secondary Structure |
Mature miRNA Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Mature miRNA | hsa-miR-371b-3p | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence | 43| AAGUGCCCCCACAGUUUGAGUGC |65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Evidence | Experimental | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experiments | Illumina | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Editing Events in miRNAs |
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SNPs in miRNA |
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Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | FBXO6 | ||||||||||||||||||||
Synonyms | FBG2, FBS2, FBX6, Fbx6b | ||||||||||||||||||||
Description | F-box protein 6 | ||||||||||||||||||||
Transcript | NM_018438 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on FBXO6 | |||||||||||||||||||||
3'UTR of FBXO6 (miRNA target sites are highlighted) |
>FBXO6|NM_018438|3'UTR 1 CAGCTGTCCATCCTGTGTCTGGGTCAGCCAGAGGTTCCTCCAGGCAGGAGCTGAGCATGGGGTGGGCAGTGAGGTCCCTG 81 TACCAGCGACTCCTGCCCCGGTTCAACCCTACCAGCTTGTGGTAACTTACTGTCACATAGCTCTGACGTTTTGTTGTAAT 161 AAATGTTTTCAGGCCGGGCACTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCAGGTGGATCACGAGGT 241 CAGGAGATAGAGACCATCCTGGCCAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGG 321 CGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGATGCAGAAGAATGGCGTGAACCCGGAAGGCAGAGCTTGCAGTGAGC 401 CGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGGCTCATAAAATAATAATAATAATAAATAAATA 481 AAAAATAAATGTTTTCAGTAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs | |||||||||||||||||||||
SNPs in gene 3'UTRs |
Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | HEK293 | ||||||
Disease | 26270.0 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
"PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine
... - Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Memczak S; Jens M; Elefsinioti A; Torti F; et al. - Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
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CLIP-seq Support 1 for dataset GSM1065669 | |
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Method / RBP | PAR-CLIP / AGO1 |
Cell line / Condition | HEK293 / 4-thiouridine, ML_MM_8 |
Location of target site | ENST00000376753.4 | 3UTR | GCCGGGCACUGUGGCUCACG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23446348 / GSE43573 |
CLIP-seq Viewer | Link |
MiRNA-Target Expression Profile | |||||||
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MiRNA-Target Expression Profile (TCGA) | |||||||
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42 hsa-miR-371b-3p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT055410 | SHOC2 | SHOC2, leucine rich repeat scaffold protein | 2 | 6 | ||||||||
MIRT065883 | GDF11 | growth differentiation factor 11 | 2 | 2 | ||||||||
MIRT183507 | BTG2 | BTG anti-proliferation factor 2 | 2 | 2 | ||||||||
MIRT277106 | CDCA8 | cell division cycle associated 8 | 2 | 2 | ||||||||
MIRT300592 | CRKL | CRK like proto-oncogene, adaptor protein | 2 | 2 | ||||||||
MIRT441361 | ZNF75A | zinc finger protein 75a | 2 | 2 | ||||||||
MIRT442692 | COX15 | COX15, cytochrome c oxidase assembly homolog | 2 | 2 | ||||||||
MIRT443388 | CHML | CHM like, Rab escort protein 2 | 2 | 2 | ||||||||
MIRT443571 | EVX2 | even-skipped homeobox 2 | 2 | 2 | ||||||||
MIRT443671 | FLT1 | fms related tyrosine kinase 1 | 2 | 2 | ||||||||
MIRT465524 | PRICKLE4 | prickle planar cell polarity protein 4 | 2 | 2 | ||||||||
MIRT492169 | STAT3 | signal transducer and activator of transcription 3 | 2 | 2 | ||||||||
MIRT496992 | TMEM231 | transmembrane protein 231 | 2 | 2 | ||||||||
MIRT509012 | FBXO6 | F-box protein 6 | 2 | 2 | ||||||||
MIRT509766 | NCAPD2 | non-SMC condensin I complex subunit D2 | 2 | 2 | ||||||||
MIRT514033 | BNIP2 | BCL2 interacting protein 2 | 2 | 2 | ||||||||
MIRT524995 | AFF1 | AF4/FMR2 family member 1 | 2 | 10 | ||||||||
MIRT529899 | C1orf64 | steroid receptor associated and regulated protein | 2 | 2 | ||||||||
MIRT530045 | SMC1A | structural maintenance of chromosomes 1A | 2 | 2 | ||||||||
MIRT534479 | SAR1B | secretion associated Ras related GTPase 1B | 2 | 2 | ||||||||
MIRT535065 | PPP2R5D | protein phosphatase 2 regulatory subunit B'delta | 2 | 4 | ||||||||
MIRT539151 | AREL1 | apoptosis resistant E3 ubiquitin protein ligase 1 | 2 | 2 | ||||||||
MIRT540937 | OIP5 | Opa interacting protein 5 | 2 | 2 | ||||||||
MIRT546360 | SYNM | synemin | 2 | 2 | ||||||||
MIRT553436 | TPM3 | tropomyosin 3 | 2 | 2 | ||||||||
MIRT556278 | MAPK1 | mitogen-activated protein kinase 1 | 2 | 2 | ||||||||
MIRT564092 | NSA2 | NSA2, ribosome biogenesis homolog | 2 | 2 | ||||||||
MIRT568376 | ATXN1 | ataxin 1 | 2 | 2 | ||||||||
MIRT572255 | ANKRD52 | ankyrin repeat domain 52 | 2 | 2 | ||||||||
MIRT572453 | TRIM10 | tripartite motif containing 10 | 2 | 2 | ||||||||
MIRT610741 | NUDT16 | nudix hydrolase 16 | 2 | 4 | ||||||||
MIRT622754 | PHACTR2 | phosphatase and actin regulator 2 | 2 | 2 | ||||||||
MIRT627220 | ZC3H12B | zinc finger CCCH-type containing 12B | 2 | 2 | ||||||||
MIRT629555 | SPN | sialophorin | 2 | 2 | ||||||||
MIRT640288 | MAP3K9 | mitogen-activated protein kinase kinase kinase 9 | 2 | 2 | ||||||||
MIRT651922 | UEVLD | UEV and lactate/malate dehyrogenase domains | 2 | 2 | ||||||||
MIRT684290 | CDK9 | cyclin dependent kinase 9 | 2 | 2 | ||||||||
MIRT700230 | REL | REL proto-oncogene, NF-kB subunit | 2 | 2 | ||||||||
MIRT702748 | IGFBP3 | insulin like growth factor binding protein 3 | 2 | 2 | ||||||||
MIRT711110 | TBC1D21 | TBC1 domain family member 21 | 2 | 2 | ||||||||
MIRT716402 | SEPT5 | septin 5 | 2 | 2 | ||||||||
MIRT723677 | CTC1 | CST telomere replication complex component 1 | 2 | 2 |
miRNA-Drug Resistance Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||
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