miRTarBase - #MIRT509103


—
pre-miRNA Information
pre-miRNA hsa-mir-3170   
Genomic Coordinates chr13: 98208524 - 98208600
Description Homo sapiens miR-3170 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3170
Sequence 10| CUGGGGUUCUGAGACAGACAGU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1393550535 3 dbSNP
rs1477436820 6 dbSNP
rs1291786017 11 dbSNP
rs528268116 15 dbSNP
rs1425176334 18 dbSNP
rs1351740752 19 dbSNP
rs1465654929 19 dbSNP
rs147240207 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BMP8B   
Synonyms BMP8, OP2
Description bone morphogenetic protein 8b
Transcript NM_001720   
Expression
Putative miRNA Targets on BMP8B
3'UTR of BMP8B
(miRNA target sites are highlighted)		 
>BMP8B|NM_001720|3'UTR
   1 GTCCACCCGCCCGGCCCAGCTGCAGCCACCCTTCTCATCTGGATCGGGCCCCTCAGAAGCAGGAAACCCTCAAACCCAGC
  81 CAGACCCCAGGCCGGGGCATTGCCAGGGAGGACCCTCACAACCACGTACATGACCCTTTCTCCTTCATGCCAGGCTCCTA
 161 TGCTCCCCTTGCCCTGCCAGGCATTTGTGTGACTGTCCTGTTTCCAGCCCAGGTGGTCTCAATCATCAGGCAGTGTTCTA
 241 CCCAAATGCAAACGCCTCTCCCGGAGGCATGTCCTGGCTGGTTCTTTGGGGTTGGCACAGAAGTCCTGTCTGAGGTCCTA
 321 TCCATGCCCCTTACTGGCTCAGGTCGTGAGATAGATGTGGAATGACCTGAGAGGCACCTGGAGCCCACTGTTGGCCACCT
 401 TGAGCTCTTCACCATCCATCACAGGGTGTGGTGTGTGTAGTCAGGGTCTGGTTGGCTCCCCATTGCCTGCCCGAGGTGCA
 481 AGGTGGGGTATAAAACTGGATAACCCCTGAAGTATTGTATATTCATGGATCTGAAGCACTGATCCACTGGTCACAGGTAG
 561 ACATGTGGAGTCAACTCAAGAAAAAGCTGAGTGAACAGCATGATTTAGGGCTAAAGCCAATGGCATTTATCTTCCCTTGT
 641 CTTCCTGCTTTGCATTTGCCTCTGCCATCTAGGAAAGACATGTAAGAGCATGGACATTTTACTTTGGAGAAACAGAAAAA
 721 TCTTGGGGCTTCCAATTGACCCATCTATCTGCCACCATGTTGCCCCACCAGGAGCTCAGCTCTGTGGAGTTTTCCCTTTG
 801 CTGAGCAAGCATGTGGTTGCATTGGGTGGCCCAGGATGACAATGCACAGCACAGATGCCATCATTTCCCTTTCCCCTCTG
 881 AATGGCAGACATCAGTAATCAATCTGGAATGTTTTTCTTCCAAATCTGAGTGGAATTTTCAAATGATCAGCACAGCCACT
 961 GCCAACAGATATGATGTAAAGTGAAACCTGGTTGCCATCTTCTGCCATGCTGAGGAGCAGTCCATCCCTGCCCGAGCATG
1041 TATCGGCAACATGGGCAGCCTGTGACCGGGTCTGGGGCGAGGCCAGGGGCCATCAAAAACAGGCTGATCACCAAAGTCAG
1121 TGTCACCCTGGATGCCCAGCAGCCCTGTCCTGTGTCTTGGGCCTGTGAGTCAAAGAAAAGGTCCTTTTCAGGGAGTGACA
1201 AGTAGTAATTAGGCTGAGTTGGGTGGAGAGGTTTGTCTCAGCCTCTGCTGTTCTCGGAAACTGCTGTTCTCCTTGGAGCA
1281 GCCACTGGGAGTTGGAGTGTTTATTTGATTTCTGACTTGCTAAGCCTGTAATTTACCTGCTGGAATAGACAGAGTCCAGC
1361 TGCCCAAACCGTGTCATTAAAAGCAGATCCTGCGCCCGCCCCATCCACAGGCACAGCCCGGCAGAGTGGTTCCACCTCCC
1441 CATGGGCCCAAGGATGCGCCTCTCTGGAGTTCACGTGCTGCACCCCCAGGGAGGGGCCTGGGGAAAGCTGGTCCAGCAGC
1521 AGGGGTGGAGGCTGGGGCCACACTGCGGGACAGCAGCCCCTCCACCTGGACCAGGGAGGGCCTCCATGTGCAAGCGCAGA
1601 GGAAGAGACCCTCCCATGTACGCAAAGGGCAGCCCCAGGCTGTCTGGAAGTTGGAGAATTCCCTATCAGCACAGGGATCT
1681 CAGCTCTGGCCTGGAGGTGAAGAGACCTGCCTTGTAGGTGGCTTCCTTATCTGCGCCTCCATTTTCTATCTGCACTTTTT
1761 GATCTCCAAACAACCTTCAGCCAAAGAATCTGTCTACCAACTCCTCATAGTGAGCCAGAAGCAGCCTCATAACCCTGAAT
1841 GTGGGGCTCTGGTGGCTGTCACGAAGCAGAGTTGGCACATAACATGGAACCTGGCCAGGCATGGTGGCTCACACCTATAA
1921 CCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACCTGAAGTCAGGAGTTCAAGACCATCCTGGCCAACACAGTGAAAC
2001 CCCATCTGTACTAAAAATACAAGATTACCTGGGCATGGTGGTGCATGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCA
2081 GAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCAGAGATCACAACATTGCACTTCAGCCTGGTGACATGAGCAAA
2161 ACTGTTGTCTCAACAAAATGAAATTATGGAACCTGTTTGCCATCCTAGTATTTACTTAATTGTTCCTTCTTAACATCAAA
2241 GATGGTCTTCTAGGCAATTGTAAATTTTAAATTAGCCAGTTATTTTGACAATTAATTTTTTACTCCACCTGTATCTTTAG
2321 TGCCCAGCCAATGATCTGGCATAGTTAGGGGTGCACCAAGAATGTCTGTAAACTACCTGAAGGTTTGTAGATATGGAGTA
2401 CACCTTACCCATTAATCAAGCTGTGCATAGCAGGAACCAATACGAGCCGTGATCCTCCTGGTTCATACAGAACAATGGAA
2481 AAACATAAGGCTTTGTCTACCTAGTTGGCCATCAGACTTTCAGCAACTTTTATCATCCAGATAGTCACCAAATGAAATAA
2561 AATAGAAAAATCCCTTGAGCAATGAAACAATTGTGAATGAACACAAAGTCCATGAATTTAATCCTTATCCGTTTGCTGAG
2641 CCAAGCATGTGCATCTGCAGTGGGTGGCCCAGGCTGGCAGCACAGATACCACCATTTCCCTTTTCTTTGCTCAGGGCATG
2721 GCCTGTTTATCTCGTTGCACCAGATGAGGGTTGGAAGGATGATGGTGGTGGTTGTTTCAGATCTACTGACAGCAATGAGA
2801 AATCAATGACAGTTGACAGGAAGAGAGGACGCATACAACAGGCAAAAGAGGAATGCCCAGCAGTCTTGGTCCTTGCGGTG
2881 CAATACTGGCCTTGAGGCCAAGTCAGCAGGGGATTCGTAGTCACTAACTTCTAACTGAGGCAGGGAAGTAACATGTTCTG
2961 GAAAAGGTCCAAAGAAACAGGAATAGAGGCAGTGTAGCAAGAGGCAGATTTTTGGTGCCAAATAGATTTGAATCCTGGTT
3041 CTGCTTCTTCCTTTGTAGAGTATGATATTGGTTCTTTCCTCCCAAAGCTATTATAAAGACTAAATATGTACACAAATCTT
3121 TGGGATGTCTGACATATAAATGCTTAACAATAGGTATTTGCTGGTATTATTACAAATGAATTTGCTTATTTTTGAGCCAC
3201 TTCTATGTCTGTCCATTAAACCAAAATGTGTTCTGCAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugACAGACAGAG--UCUUGGGGUc 5'
            || ||  | |  | ||||||| 
Target 5' ggTGGCTCACACCTATAACCCCAg 3'
 1903 - 1926 150.00 -17.50
2 
miRNA  3' ugACAGACAGAGUC---UUGGGGUc 5'
            || |   | |||   ||||||| 
Target 5' ccTGGCCAACACAGTGAAACCCCAt 3'
 1981 - 2005 148.00 -13.24
3 
miRNA  3' ugACAGACAGAGUCUUGGGGUc 5'
            ||  || || | ||:|||| 
Target 5' ggTGCATGCCT-ATAATCCCAg 3'
 2040 - 2060 139.00 -14.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30500829 3 COSMIC
COSN30449189 8 COSMIC
COSN26638396 11 COSMIC
COSN19666071 12 COSMIC
COSN30177427 14 COSMIC
COSN30519150 39 COSMIC
COSN8862255 45 COSMIC
COSN30484466 51 COSMIC
COSN30480317 63 COSMIC
COSN30152411 71 COSMIC
COSN30125827 93 COSMIC
COSN31483983 117 COSMIC
COSN24596438 144 COSMIC
COSN28838938 150 COSMIC
COSN32063499 553 COSMIC
COSN8469219 852 COSMIC
COSN17076177 1307 COSMIC
COSN8469218 1371 COSMIC
COSN30045376 1617 COSMIC
COSN24574656 1764 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs917666228 1 dbSNP
rs757328314 4 dbSNP
rs754384018 5 dbSNP
rs375168101 6 dbSNP
rs764564197 8 dbSNP
rs185202946 9 dbSNP
rs369894443 11 dbSNP
rs566745642 12 dbSNP
rs200671654 13 dbSNP
rs1468661141 17 dbSNP
rs769227641 18 dbSNP
rs747635740 19 dbSNP
rs1207396538 22 dbSNP
rs1425586644 25 dbSNP
rs199513606 29 dbSNP
rs1186118290 35 dbSNP
rs1453115599 37 dbSNP
rs371633750 42 dbSNP
rs1364896962 43 dbSNP
rs12094291 45 dbSNP
rs200807723 46 dbSNP
rs746147686 48 dbSNP
rs1324514971 50 dbSNP
rs1327660918 62 dbSNP
rs1368587153 69 dbSNP
rs971920822 74 dbSNP
rs1307539062 76 dbSNP
rs966533330 80 dbSNP
rs1019000457 83 dbSNP
rs953235830 85 dbSNP
rs1032776187 93 dbSNP
rs754531895 94 dbSNP
rs1467378677 96 dbSNP
rs986148217 97 dbSNP
rs1251805796 100 dbSNP
rs953330388 111 dbSNP
rs967074940 115 dbSNP
rs1179709238 119 dbSNP
rs148910981 122 dbSNP
rs1000876989 125 dbSNP
rs1009816270 126 dbSNP
rs1392559697 132 dbSNP
rs1457183452 134 dbSNP
rs1298556968 136 dbSNP
rs1375413365 138 dbSNP
rs1020904268 149 dbSNP
rs1276462083 154 dbSNP
rs1287155968 156 dbSNP
rs1218240196 160 dbSNP
rs1341272963 165 dbSNP
rs1300095070 171 dbSNP
rs1432859143 172 dbSNP
rs896781297 177 dbSNP
rs371069649 182 dbSNP
rs1348013662 189 dbSNP
rs562023415 191 dbSNP
rs1014391402 193 dbSNP
rs1322677410 201 dbSNP
rs751060507 205 dbSNP
rs1405684470 207 dbSNP
rs779642898 214 dbSNP
rs1221263495 216 dbSNP
rs41267033 218 dbSNP
rs1194646108 223 dbSNP
rs1251743969 224 dbSNP
rs1002386849 225 dbSNP
rs905249324 232 dbSNP
rs1049144867 233 dbSNP
rs528558588 239 dbSNP
rs937694919 249 dbSNP
rs1356132499 252 dbSNP
rs1460392689 253 dbSNP
rs559868170 253 dbSNP
rs930605774 254 dbSNP
rs138636154 255 dbSNP
rs1036360063 256 dbSNP
rs944606740 262 dbSNP
rs374226071 263 dbSNP
rs1377944799 277 dbSNP
rs919174475 278 dbSNP
rs972309375 284 dbSNP
rs911840065 291 dbSNP
rs150413514 293 dbSNP
rs911993400 294 dbSNP
rs1274500606 300 dbSNP
rs563640878 314 dbSNP
rs1322691766 324 dbSNP
rs1486297414 325 dbSNP
rs765108302 345 dbSNP
rs543310924 346 dbSNP
rs1187388734 351 dbSNP
rs141541760 352 dbSNP
rs1426452225 354 dbSNP
rs368568506 362 dbSNP
rs1167767509 363 dbSNP
rs1033047828 367 dbSNP
rs1436544810 375 dbSNP
rs978775932 380 dbSNP
rs1365427895 383 dbSNP
rs1430837089 397 dbSNP
rs1274111600 402 dbSNP
rs1359467116 404 dbSNP
rs546296796 409 dbSNP
rs1297388318 412 dbSNP
rs967155553 413 dbSNP
rs1237231138 415 dbSNP
rs1020497216 416 dbSNP
rs1014857688 418 dbSNP
rs1216599789 419 dbSNP
rs1244023520 422 dbSNP
rs1485030551 431 dbSNP
rs895961572 433 dbSNP
rs1253461281 436 dbSNP
rs1019961688 438 dbSNP
rs1455520681 446 dbSNP
rs1171614091 454 dbSNP
rs1034469890 456 dbSNP
rs992518483 456 dbSNP
rs1329002201 461 dbSNP
rs1400742226 466 dbSNP
rs866884655 467 dbSNP
rs960918079 468 dbSNP
rs562056 470 dbSNP
rs930285788 472 dbSNP
rs372975399 473 dbSNP
rs1443586237 474 dbSNP
rs1273520525 476 dbSNP
rs369337761 482 dbSNP
rs1224364378 485 dbSNP
rs147863989 486 dbSNP
rs1327330241 489 dbSNP
rs1028271901 505 dbSNP
rs994928590 508 dbSNP
rs1208406204 509 dbSNP
rs1423849159 511 dbSNP
rs897936813 517 dbSNP
rs1196517356 527 dbSNP
rs1246004840 528 dbSNP
rs760781998 531 dbSNP
rs1008867246 535 dbSNP
rs911749005 558 dbSNP
rs890348646 565 dbSNP
rs1455950628 568 dbSNP
rs1396229542 572 dbSNP
rs932087169 601 dbSNP
rs925991592 602 dbSNP
rs558211748 610 dbSNP
rs979174791 636 dbSNP
rs775716268 645 dbSNP
rs1198363474 664 dbSNP
rs1281334907 669 dbSNP
rs1348645269 671 dbSNP
rs375385692 678 dbSNP
rs540074422 683 dbSNP
rs775343925 684 dbSNP
rs967382894 693 dbSNP
rs913489740 695 dbSNP
rs1337250820 700 dbSNP
rs570949944 713 dbSNP
rs1208121482 717 dbSNP
rs993126411 721 dbSNP
rs960262875 723 dbSNP
rs192018889 726 dbSNP
rs537316494 730 dbSNP
rs759824445 734 dbSNP
rs568478251 735 dbSNP
rs945761534 736 dbSNP
rs1219779259 738 dbSNP
rs969119064 740 dbSNP
rs373064515 741 dbSNP
rs1188086872 744 dbSNP
rs994922584 747 dbSNP
rs548634195 751 dbSNP
rs1474051656 758 dbSNP
rs897519287 760 dbSNP
rs1165859051 774 dbSNP
rs912998312 777 dbSNP
rs1036419590 778 dbSNP
rs1410889460 778 dbSNP
rs1369275256 784 dbSNP
rs1409230911 791 dbSNP
rs528470832 796 dbSNP
rs1357572703 803 dbSNP
rs1242969888 809 dbSNP
rs535349295 814 dbSNP
rs992469219 816 dbSNP
rs187979092 822 dbSNP
rs1377191525 832 dbSNP
rs1482702150 834 dbSNP
rs890368370 849 dbSNP
rs1259059563 852 dbSNP
rs745655177 856 dbSNP
rs1186326724 857 dbSNP
rs981038703 862 dbSNP
rs554642821 868 dbSNP
rs552379887 869 dbSNP
rs1242340142 885 dbSNP
rs1475921644 886 dbSNP
rs183319635 900 dbSNP
rs1388831813 903 dbSNP
rs1429715771 905 dbSNP
rs1358119511 907 dbSNP
rs1176121016 908 dbSNP
rs1333679789 912 dbSNP
rs1327281942 914 dbSNP
rs926047021 950 dbSNP
rs1295196211 962 dbSNP
rs1341337913 970 dbSNP
rs1027803771 972 dbSNP
rs1282396400 975 dbSNP
rs373633076 981 dbSNP
rs191587187 983 dbSNP
rs1415445799 989 dbSNP
rs913256063 992 dbSNP
rs1014981491 995 dbSNP
rs1008814762 1017 dbSNP
rs1253099958 1021 dbSNP
rs1190872115 1033 dbSNP
rs890465300 1034 dbSNP
rs1050892884 1040 dbSNP
rs543723887 1044 dbSNP
rs904463814 1045 dbSNP
rs1238151923 1052 dbSNP
rs529913214 1059 dbSNP
rs114710739 1067 dbSNP
rs945879281 1068 dbSNP
rs1402704941 1074 dbSNP
rs1283714161 1075 dbSNP
rs1364272258 1078 dbSNP
rs912944601 1079 dbSNP
rs1354220543 1081 dbSNP
rs540979049 1086 dbSNP
rs1056907837 1088 dbSNP
rs1231858999 1089 dbSNP
rs1027552645 1090 dbSNP
rs148796257 1116 dbSNP
rs1302944577 1119 dbSNP
rs1267107301 1121 dbSNP
rs962098726 1122 dbSNP
rs144729517 1131 dbSNP
rs571708118 1143 dbSNP
rs375739148 1147 dbSNP
rs938444255 1150 dbSNP
rs1008532832 1152 dbSNP
rs1157146965 1162 dbSNP
rs1388212887 1166 dbSNP
rs1461736245 1167 dbSNP
rs1295112697 1169 dbSNP
rs1388462780 1176 dbSNP
rs748900388 1179 dbSNP
rs1386199022 1180 dbSNP
rs1307080216 1182 dbSNP
rs142395123 1184 dbSNP
rs1158648499 1187 dbSNP
rs866442260 1195 dbSNP
rs1335109252 1200 dbSNP
rs778315144 1209 dbSNP
rs996024571 1216 dbSNP
rs577372951 1219 dbSNP
rs1365965781 1221 dbSNP
rs147724967 1222 dbSNP
rs1484051928 1237 dbSNP
rs1423481746 1242 dbSNP
rs973519765 1245 dbSNP
rs1411474231 1249 dbSNP
rs1475687484 1251 dbSNP
rs1166634773 1252 dbSNP
rs1366570602 1255 dbSNP
rs187589767 1255 dbSNP
rs111245767 1256 dbSNP
rs946194472 1256 dbSNP
rs777374866 1260 dbSNP
rs568795234 1262 dbSNP
rs1229729735 1265 dbSNP
rs750897059 1272 dbSNP
rs1262551343 1274 dbSNP
rs376496822 1278 dbSNP
rs1244550550 1282 dbSNP
rs1028978059 1283 dbSNP
rs555295890 1289 dbSNP
rs996610112 1292 dbSNP
rs904414402 1295 dbSNP
rs1486119904 1297 dbSNP
rs1021553883 1298 dbSNP
rs920142660 1301 dbSNP
rs1320758257 1307 dbSNP
rs1254351903 1308 dbSNP
rs1010037023 1325 dbSNP
rs1170919067 1328 dbSNP
rs1293457145 1330 dbSNP
rs891624885 1331 dbSNP
rs535059694 1343 dbSNP
rs938393644 1346 dbSNP
rs1300651334 1352 dbSNP
rs905636981 1352 dbSNP
rs566038250 1358 dbSNP
rs1395781034 1363 dbSNP
rs1367961087 1370 dbSNP
rs1226929094 1371 dbSNP
rs954333217 1391 dbSNP
rs552642408 1392 dbSNP
rs3895180 1393 dbSNP
rs1044038229 1394 dbSNP
rs930992764 1397 dbSNP
rs1447575372 1398 dbSNP
rs1187777140 1412 dbSNP
rs1395622383 1413 dbSNP
rs3893452 1419 dbSNP
rs555382207 1420 dbSNP
rs1454047664 1428 dbSNP
rs41267031 1436 dbSNP
rs1367715574 1437 dbSNP
rs940981081 1438 dbSNP
rs1433369358 1439 dbSNP
rs1297452477 1441 dbSNP
rs1021495161 1443 dbSNP
rs1476950870 1443 dbSNP
rs1010453647 1444 dbSNP
rs891883058 1445 dbSNP
rs1057121209 1446 dbSNP
rs1194429329 1447 dbSNP
rs1209667807 1451 dbSNP
rs938753312 1457 dbSNP
rs1429072831 1458 dbSNP
rs908050301 1464 dbSNP
rs1207896079 1470 dbSNP
rs757803944 1474 dbSNP
rs954805739 1475 dbSNP
rs1029506699 1476 dbSNP
rs535393409 1480 dbSNP
rs969129986 1483 dbSNP
rs191228537 1485 dbSNP
rs940159716 1488 dbSNP
rs1386028936 1499 dbSNP
rs885784 1505 dbSNP
rs1315654164 1519 dbSNP
rs987249061 1525 dbSNP
rs1439290670 1528 dbSNP
rs560898559 1530 dbSNP
rs1366914199 1535 dbSNP
rs1227446338 1537 dbSNP
rs1035509805 1546 dbSNP
rs1003131747 1547 dbSNP
rs1227536323 1550 dbSNP
rs905588477 1560 dbSNP
rs1453254533 1561 dbSNP
rs1021923109 1562 dbSNP
rs1246068756 1565 dbSNP
rs1483069265 1565 dbSNP
rs1010090370 1581 dbSNP
rs1044541202 1586 dbSNP
rs930961085 1587 dbSNP
rs891650634 1591 dbSNP
rs898148359 1596 dbSNP
rs1036697007 1598 dbSNP
rs1415061191 1602 dbSNP
rs1002950320 1607 dbSNP
rs1349827247 1609 dbSNP
rs1464289767 1610 dbSNP
rs1309994192 1617 dbSNP
rs540920059 1621 dbSNP
rs1044383869 1622 dbSNP
rs908164796 1628 dbSNP
rs1375994869 1632 dbSNP
rs780496399 1633 dbSNP
rs1196745874 1634 dbSNP
rs995873814 1638 dbSNP
rs1432507259 1642 dbSNP
rs1289011000 1647 dbSNP
rs1253439384 1661 dbSNP
rs898765433 1667 dbSNP
rs1456179511 1676 dbSNP
rs987573383 1682 dbSNP
rs757171751 1699 dbSNP
rs933485424 1706 dbSNP
rs371856001 1711 dbSNP
rs1187726460 1713 dbSNP
rs1238853934 1727 dbSNP
rs1473948902 1730 dbSNP
rs922003578 1730 dbSNP
rs1340935245 1731 dbSNP
rs1161856989 1733 dbSNP
rs975222774 1734 dbSNP
rs527302191 1735 dbSNP
rs1233206787 1743 dbSNP
rs1170562454 1753 dbSNP
rs1021617236 1755 dbSNP
rs1368716407 1759 dbSNP
rs1372310868 1774 dbSNP
rs564681389 1778 dbSNP
rs940274228 1786 dbSNP
rs988839439 1791 dbSNP
rs1335046337 1797 dbSNP
rs912760043 1800 dbSNP
rs955911613 1807 dbSNP
rs1365821481 1808 dbSNP
rs933090742 1818 dbSNP
rs1340767137 1819 dbSNP
rs763914695 1826 dbSNP
rs1200555031 1836 dbSNP
rs1280245242 1840 dbSNP
rs1035624635 1847 dbSNP
rs1376446232 1851 dbSNP
rs142910623 1856 dbSNP
rs974439860 1862 dbSNP
rs970304785 1863 dbSNP
rs968767787 1886 dbSNP
rs1022831745 1887 dbSNP
rs569291173 1896 dbSNP
rs1191000728 1900 dbSNP
rs371014613 1915 dbSNP
rs989156478 1916 dbSNP
rs1173276082 1923 dbSNP
rs955978373 1925 dbSNP
rs1036645994 1926 dbSNP
rs1002627505 1937 dbSNP
rs1389017549 1947 dbSNP
rs970118431 1956 dbSNP
rs1175284787 1975 dbSNP
rs376389360 1979 dbSNP
rs1003848843 1982 dbSNP
rs1022981036 1984 dbSNP
rs1437661323 1990 dbSNP
rs6681443 1993 dbSNP
rs1364408147 2000 dbSNP
rs1233296050 2003 dbSNP
rs804252 2004 dbSNP
rs1439163164 2012 dbSNP
rs557236890 2025 dbSNP
rs922088949 2029 dbSNP
rs1199338489 2043 dbSNP
rs186385780 2048 dbSNP
rs1283010236 2050 dbSNP
rs144833639 2053 dbSNP
rs1428494074 2057 dbSNP
rs914673576 2061 dbSNP
rs149678179 2072 dbSNP
rs182968426 2076 dbSNP
rs921700238 2077 dbSNP
rs1412998529 2084 dbSNP
rs1458579226 2088 dbSNP
rs1338886402 2094 dbSNP
rs190401313 2097 dbSNP
rs1039166466 2098 dbSNP
rs947137016 2101 dbSNP
rs981758511 2107 dbSNP
rs539008081 2108 dbSNP
rs766497493 2120 dbSNP
rs570261620 2127 dbSNP
rs1379497280 2146 dbSNP
rs1330824069 2153 dbSNP
rs995382701 2154 dbSNP
rs981258993 2163 dbSNP
rs116116880 2166 dbSNP
rs550246202 2167 dbSNP
rs996020576 2174 dbSNP
rs962825745 2178 dbSNP
rs1186233910 2180 dbSNP
rs1412931936 2192 dbSNP
rs1016044882 2197 dbSNP
rs1156683676 2201 dbSNP
rs1362943366 2207 dbSNP
rs116241541 2208 dbSNP
rs1388533458 2211 dbSNP
rs1403766067 2214 dbSNP
rs567085376 2220 dbSNP
rs1351936405 2222 dbSNP
rs767341776 2222 dbSNP
rs1258990680 2223 dbSNP
rs1287325330 2233 dbSNP
rs547925230 2239 dbSNP
rs369794697 2242 dbSNP
rs773575194 2246 dbSNP
rs1488234753 2251 dbSNP
rs890781338 2252 dbSNP
rs115708277 2258 dbSNP
rs1299903577 2263 dbSNP
rs997032311 2264 dbSNP
rs900031671 2276 dbSNP
rs1225785183 2279 dbSNP
rs998156149 2287 dbSNP
rs1438821385 2298 dbSNP
rs1354509324 2302 dbSNP
rs900781263 2305 dbSNP
rs1252699756 2307 dbSNP
rs1484081536 2307 dbSNP
rs1039582117 2310 dbSNP
rs75474993 2314 dbSNP
rs770089765 2315 dbSNP
rs115871508 2318 dbSNP
rs377334770 2322 dbSNP
rs1296385726 2325 dbSNP
rs1168671091 2327 dbSNP
rs531332424 2332 dbSNP
rs1371794653 2333 dbSNP
rs1427274187 2339 dbSNP
rs186396372 2343 dbSNP
rs796129712 2345 dbSNP
rs1297197147 2349 dbSNP
rs1379478715 2353 dbSNP
rs934304870 2356 dbSNP
rs181842975 2359 dbSNP
rs771658608 2370 dbSNP
rs981489797 2381 dbSNP
rs1344352865 2382 dbSNP
rs1203153802 2383 dbSNP
rs777535288 2388 dbSNP
rs948622661 2394 dbSNP
rs575089114 2396 dbSNP
rs1253901483 2398 dbSNP
rs1443782875 2411 dbSNP
rs745353358 2416 dbSNP
rs970368427 2420 dbSNP
rs778690420 2428 dbSNP
rs1447088463 2430 dbSNP
rs1169179258 2431 dbSNP
rs973925947 2433 dbSNP
rs927482397 2443 dbSNP
rs561438987 2444 dbSNP
rs974292729 2449 dbSNP
rs1452402552 2453 dbSNP
rs1298944067 2466 dbSNP
rs1368027101 2472 dbSNP
rs1212858864 2474 dbSNP
rs568703927 2476 dbSNP
rs1419446488 2477 dbSNP
rs1190832481 2484 dbSNP
rs1353087912 2492 dbSNP
rs1212428086 2500 dbSNP
rs963127807 2511 dbSNP
rs1015642588 2521 dbSNP
rs982802170 2522 dbSNP
rs1015413334 2523 dbSNP
rs955330944 2524 dbSNP
rs1168420755 2527 dbSNP
rs982490897 2527 dbSNP
rs1463523969 2532 dbSNP
rs571573074 2536 dbSNP
rs900075889 2539 dbSNP
rs1029727462 2541 dbSNP
rs541760241 2542 dbSNP
rs189634983 2548 dbSNP
rs1289582275 2559 dbSNP
rs1011033102 2571 dbSNP
rs1469588201 2573 dbSNP
rs1321704087 2574 dbSNP
rs1391455371 2576 dbSNP
rs1429325910 2577 dbSNP
rs1288802177 2579 dbSNP
rs1368323530 2588 dbSNP
rs748891037 2591 dbSNP
rs185964191 2605 dbSNP
rs1218027476 2608 dbSNP
rs1323144217 2608 dbSNP
rs538705795 2616 dbSNP
rs1228752729 2625 dbSNP
rs755930737 2628 dbSNP
rs893301164 2631 dbSNP
rs906900347 2635 dbSNP
rs1053320251 2637 dbSNP
rs1489154284 2641 dbSNP
rs1188996257 2646 dbSNP
rs180705828 2647 dbSNP
rs1361192325 2657 dbSNP
rs1169862981 2671 dbSNP
rs12760318 2672 dbSNP
rs1267710289 2680 dbSNP
rs556393314 2683 dbSNP
rs934715196 2686 dbSNP
rs1472747410 2690 dbSNP
rs368715558 2695 dbSNP
rs907314933 2696 dbSNP
rs1399337695 2698 dbSNP
rs1158951998 2700 dbSNP
rs1045371961 2702 dbSNP
rs1438663990 2709 dbSNP
rs1046118036 2716 dbSNP
rs114754083 2719 dbSNP
rs1345101685 2724 dbSNP
rs1410736197 2732 dbSNP
rs915777515 2733 dbSNP
rs567147269 2734 dbSNP
rs974315889 2735 dbSNP
rs1290471524 2737 dbSNP
rs1323485120 2742 dbSNP
rs1219604476 2749 dbSNP
rs941181581 2754 dbSNP
rs1483100541 2762 dbSNP
rs547222524 2765 dbSNP
rs866495944 2773 dbSNP
rs1177028897 2777 dbSNP
rs28541722 2779 dbSNP
rs28447267 2780 dbSNP
rs955425437 2788 dbSNP
rs1161737756 2789 dbSNP
rs1167937826 2791 dbSNP
rs1029700563 2792 dbSNP
rs975375879 2804 dbSNP
rs1408926949 2815 dbSNP
rs1419590475 2821 dbSNP
rs1284629761 2824 dbSNP
rs964645114 2825 dbSNP
rs1243595318 2826 dbSNP
rs1022520308 2829 dbSNP
rs955096311 2830 dbSNP
rs1029431081 2831 dbSNP
rs975445163 2832 dbSNP
rs1194601339 2835 dbSNP
rs752722919 2837 dbSNP
rs28398155 2844 dbSNP
rs1436913208 2850 dbSNP
rs12741392 2854 dbSNP
rs1204247825 2861 dbSNP
rs956922475 2863 dbSNP
rs1446823157 2869 dbSNP
rs571495234 2876 dbSNP
rs1022413342 2877 dbSNP
rs1011833415 2894 dbSNP
rs1385193484 2902 dbSNP
rs998601511 2916 dbSNP
rs767336582 2917 dbSNP
rs1394594929 2927 dbSNP
rs1409675246 2930 dbSNP
rs1335111183 2934 dbSNP
rs1360626639 2936 dbSNP
rs1450212783 2937 dbSNP
rs1031831108 2945 dbSNP
rs1053846 2951 dbSNP
rs1229944434 2954 dbSNP
rs3820618 2963 dbSNP
rs1338334596 2978 dbSNP
rs1219378195 2981 dbSNP
rs1045821050 2984 dbSNP
rs948696964 2994 dbSNP
rs1462894550 2997 dbSNP
rs139818616 3010 dbSNP
rs1243050990 3023 dbSNP
rs145930147 3025 dbSNP
rs1302444339 3028 dbSNP
rs1441295045 3036 dbSNP
rs1475133977 3038 dbSNP
rs528961974 3041 dbSNP
rs1328938623 3044 dbSNP
rs908478240 3054 dbSNP
rs982554851 3055 dbSNP
rs933840836 3060 dbSNP
rs922311299 3064 dbSNP
rs1335894955 3067 dbSNP
rs560274282 3067 dbSNP
rs1389269115 3090 dbSNP
rs1316133230 3093 dbSNP
rs1440994076 3093 dbSNP
rs776691387 3095 dbSNP
rs908397096 3097 dbSNP
rs1354648519 3101 dbSNP
rs1436595805 3107 dbSNP
rs1171853082 3115 dbSNP
rs964175302 3125 dbSNP
rs1276221116 3130 dbSNP
rs767367194 3137 dbSNP
rs1321035888 3142 dbSNP
rs746372301 3151 dbSNP
rs914892847 3151 dbSNP
rs934070123 3155 dbSNP
rs1262987643 3164 dbSNP
rs1330248691 3177 dbSNP
rs1207351710 3181 dbSNP
rs1260291208 3183 dbSNP
rs532648753 3201 dbSNP
rs1199720790 3204 dbSNP
rs541674460 3205 dbSNP
rs975426742 3227 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugacAGACAGAGUCUUGGGGUc 5'
              ||   | :| ||||||| 
Target 5' ---cUCACACCUAUAACCCCAg 3'
 		1 - 19
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 656.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 656.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000372827.3 | 3UTR | CUCACACCUAUAACCCCAGCACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000372827.3 | 3UTR | CUCACACCUAUAACCCCAGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000372827.3 | 3UTR | UGGCUCACACCUAUAACCCCAGCACUUUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000372827.3 | 3UTR | GCUCACACCUAUAACCCCAGCACUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000372827.3 | 3UTR | GCUCACACCUAUAACCCCAGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC 0.412 0.01 0.362 0.02 31 Click to see details
KIRP 0.37 0.02 0.409 0.01 32 Click to see details
KICH 0.421 0.02 0.186 0.2 23 Click to see details
BRCA 0.221 0.03 0.194 0.06 69 Click to see details
PRAD 0.397 0.05 0.364 0.07 18 Click to see details
BLCA -0.601 0.06 -0.548 0.08 8 Click to see details
KIRC 0.171 0.08 0.128 0.15 67 Click to see details
HNSC 0.287 0.1 0.277 0.11 21 Click to see details
CHOL -0.376 0.18 -0.167 0.35 8 Click to see details
LIHC 0.127 0.19 0.174 0.12 48 Click to see details
ESCA -0.379 0.2 -0.393 0.19 7 Click to see details
UCEC 0.121 0.32 0.218 0.19 18 Click to see details
STAD -0.107 0.35 -0.089 0.38 15 Click to see details
THCA -0.009 0.47 0.015 0.46 59 Click to see details
THCA -0.009 0.47 0.015 0.46 59 Click to see details
THCA -0.009 0.47 0.015 0.46 59 Click to see details
THCA -0.009 0.47 0.015 0.46 59 Click to see details
THCA -0.009 0.47 0.015 0.46 59 Click to see details
121 hsa-miR-3170 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074402 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT114937 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT248326 HOXC8 homeobox C8 2 2
MIRT329432 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT460868 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT464626 UBE4A ubiquitination factor E4A 2 2
MIRT466225 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT473424 MDM4 MDM4, p53 regulator 2 2
MIRT473514 MAX MYC associated factor X 2 2
MIRT475798 HDGF heparin binding growth factor 2 2
MIRT478032 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT482963 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT485905 PGPEP1 pyroglutamyl-peptidase I 2 6
MIRT488146 PRRC2B proline rich coiled-coil 2B 2 4
MIRT491777 ZNF24 zinc finger protein 24 2 2
MIRT493023 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT502199 HSPB8 heat shock protein family B (small) member 8 2 2
MIRT505367 TMEM154 transmembrane protein 154 2 4
MIRT505919 RCAN3 RCAN family member 3 2 4
MIRT509089 SYNPO2L synaptopodin 2 like 2 4
MIRT509103 BMP8B bone morphogenetic protein 8b 2 6
MIRT509571 HIST2H2AB histone cluster 2 H2A family member b 2 4
MIRT509782 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511295 KIAA1551 KIAA1551 2 2
MIRT514289 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514389 CLUAP1 clusterin associated protein 1 2 2
MIRT514404 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT514421 SLC38A7 solute carrier family 38 member 7 2 2
MIRT514546 PTGR2 prostaglandin reductase 2 2 2
MIRT514790 SLC25A45 solute carrier family 25 member 45 2 2
MIRT514836 LYRM7 LYR motif containing 7 2 2
MIRT514850 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515112 LMOD3 leiomodin 3 2 2
MIRT515338 CXorf36 chromosome X open reading frame 36 2 2
MIRT515582 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT515612 ISY1 ISY1 splicing factor homolog 2 2
MIRT516018 A1CF APOBEC1 complementation factor 2 2
MIRT516721 MYPN myopalladin 2 2
MIRT516739 GSTK1 glutathione S-transferase kappa 1 2 2
MIRT516774 PTRF caveolae associated protein 1 2 4
MIRT517076 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT517115 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517196 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517321 ZNF347 zinc finger protein 347 2 2
MIRT517612 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT517626 ZNF491 zinc finger protein 491 2 2
MIRT517656 TRIM72 tripartite motif containing 72 2 4
MIRT517742 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 4
MIRT518002 RPL4 ribosomal protein L4 2 4
MIRT518165 FGB fibrinogen beta chain 2 2
MIRT518180 SLC27A4 solute carrier family 27 member 4 2 2
MIRT518555 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT518572 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT519008 NOA1 nitric oxide associated 1 2 2
MIRT519340 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT519363 RBM28 RNA binding motif protein 28 2 2
MIRT519388 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519404 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519615 ZNF788 zinc finger family member 788 2 4
MIRT519817 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT520455 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT520761 TCF23 transcription factor 23 2 2
MIRT520981 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521275 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component 2 2
MIRT521397 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT522023 PAQR3 progestin and adipoQ receptor family member 3 2 4
MIRT522105 NUDT3 nudix hydrolase 3 2 2
MIRT522145 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522219 NPFFR1 neuropeptide FF receptor 1 2 2
MIRT522274 NKAP NFKB activating protein 2 2
MIRT522639 MANEAL mannosidase endo-alpha like 2 2
MIRT523167 HIST3H3 histone cluster 3 H3 2 2
MIRT523497 GMPS guanine monophosphate synthase 2 4
MIRT524033 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524396 COQ10B coenzyme Q10B 2 2
MIRT524682 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT525542 PHB2 prohibitin 2 2 4
MIRT528430 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT528738 RAB13 RAB13, member RAS oncogene family 2 2
MIRT530944 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT531653 ZFP14 ZFP14 zinc finger protein 2 2
MIRT531851 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT533473 TRIM71 tripartite motif containing 71 2 2
MIRT533658 TMF1 TATA element modulatory factor 1 2 2
MIRT540966 ZNF8 zinc finger protein 8 2 2
MIRT541988 MYO1C myosin IC 2 2
MIRT549545 CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 2 2
MIRT551722 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT553984 SRPR SRP receptor alpha subunit 2 2
MIRT555113 PUM2 pumilio RNA binding family member 2 2 2
MIRT563172 ZRANB3 zinc finger RANBP2-type containing 3 2 2
MIRT564006 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT564445 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565959 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT607541 GLI2 GLI family zinc finger 2 2 2
MIRT607685 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT609323 ZNF701 zinc finger protein 701 2 2
MIRT614038 THBS2 thrombospondin 2 2 2
MIRT616763 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT619706 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT619955 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT625229 C6orf89 chromosome 6 open reading frame 89 2 2
MIRT634238 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634964 C8orf17 chromosome 8 open reading frame 17 2 2
MIRT639615 FGF19 fibroblast growth factor 19 2 2
MIRT642692 ZNF878 zinc finger protein 878 2 2
MIRT643689 KIAA0586 KIAA0586 2 2
MIRT645271 SLC38A5 solute carrier family 38 member 5 2 2
MIRT647340 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648167 TMEM192 transmembrane protein 192 2 2
MIRT655464 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT660232 BMP7 bone morphogenetic protein 7 2 2
MIRT666181 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT673638 CYCS cytochrome c, somatic 2 2
MIRT674044 ATXN3 ataxin 3 2 2
MIRT691167 APOL6 apolipoprotein L6 2 2
MIRT711724 NUPL2 nucleoporin like 2 2 2
MIRT712404 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 2
MIRT715537 FTCD formimidoyltransferase cyclodeaminase 2 2
MIRT715939 NUP93 nucleoporin 93 2 2
MIRT722976 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3170 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3170 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-3170 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3170 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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