pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RPS23   
Synonyms MABAS, MCINS, PAMAS, S23
Description ribosomal protein S23
Transcript NM_001025   
Expression
Putative miRNA Targets on RPS23
3'UTR of RPS23
(miRNA target sites are highlighted)
>RPS23|NM_001025|3'UTR
   1 ATATTAATGGTGAAAACACTGTAGTAATAAATTTTCATATGCCAAAAAATGTTTGTATCTTACTGTCCCCTGTTCTCACC
  81 ACGAAGATCATGTTCATTACCACCACCACCCCCCCTTATTTTTTTTATCCTAAACCAGCAAACGCAGGACCTGTACCAAT
 161 TTTAGGAGACAATAAGACAGGGTTGTTTCAGGATTCTCTAGAGTTAATAACATTTGTAACCTGGCACAGTTTCCCTCATC
 241 CTGTGGAATAAGAAAATGGGATAGATCTGGAATAAATGTGCAGTATTGTAGTATTACTTTAAGAACTTTAAGGGAACTTC
 321 AAAAACTCACTGAAATTCTAGTGAGATACTTTCTTTTTTATTCTTGGTATTTTCCATATCGGGTGCAACACTTCAGTTAC
 401 CAAATTTCATTGCACATAGATTATCTTAGGTACCCTTGGAAATGCACATTCTTGTATCCATCTTACAGGGGCCCAAGATG
 481 ATAAATAGTAAACTCAAAATTGCTCCCCACTCTGTTTATTATTTAAAGGTGTCAGGATCTGTGTTGTAATGTGTCTACAT
 561 TAATGTGTTTAGGAGAATACAGGCATTGGATCATTTAGTTGATGGAAGTATATGCCAGGCAAGGGAGATAAGGTATACGA
 641 CAAGACTGATGTTTTCAGTATCTTCTCATGAGGTTGTCAGAGACCTTCATGTCTTCAAAGACTAGTCAGCAAATGAAGTG
 721 GTTTAGTGTAGAGACAAGATTGGTTGTGTTTTGATAATTTAAGCTAGGTATTGAGTACATGTGGATTTTGCTGTCCACAA
 801 ATACTTGTTTCAGAGTTTTCATGGATACAGTGGCATGGTTGAAATGAAGCTGTGAGCCTTCTGCTTTAAATCTGATGTAA
 881 GAAACTCCTGTTAACAAATAGTAAGTATGGGTTAATTAGCCCTTTGATCAAAGCCTAGCTTTACATTGTTTAGGATCTTT
 961 GGAAAACAATTGGTTTGGTTGCCCACTTTCCGTAGGATCAAGAGCAGAACCTTTCACATGGCACAGAAGAACCCAGGTTG
1041 CGCTTCATACCTGCATATTCCAGCCTTAGCCTGCCATTTCTCTCCTTGGCACTTTGTGCTCCAGCAACACTGGTCTCAGT
1121 TGGTCATCCTCAAACTTGGGTTCCATATCCAGCCTCAGGACCTCTGTTCCTGTTACTATGGTTCCTTGCATGTCGCCTGC
1201 TCTTACTAAAGAGCTCGTGTGTTTTCCAGCACACTTCGGTTTATCTCTTGATGATGATGCTAGTCTCTCCCTCCGCAAGG
1281 GCGGAAAGGCTGCCTGTTGGTTTGTACCAGTGTTTCCTAACGTGTAGCTGCAGTCAGTATTTGGCTAAGCTGTTCCCAGG
1361 GGCTCAACAGATGCTTTCGGATGAGCCTTAACTGACCCAATCCTTTGTGATGCGGGAGAGATTGCTAGGCCTCGCTCACC
1441 TGGCCAGAACCAGGGAAAGAGGCCGCGGTTGCAGCGCGATTCCAGGCCCTGGGCGTCAGGCGCGGGGTGGGCAGCTCTCC
1521 CCGGGCGGTGGGGCCCTTGTGACCGCGAGGCGGGGCGCACCAGGAAGGGAGTGGGACAGCGCGGGCGCCCAGGGATGTGG
1601 CCTGGTTACCTGCCTTCTCTGATACGTCAAGACACCTTCAACAATGGCTTGCAGCTGTACCCTGTTGGCTGCACCCAGGA
1681 CGCCCTTTTCACTGCTAAGCAGTCCTACCTGAGGCCCAGGGGCTGCCAGATTGACCCATAAATAATCTCCGGCGCCTCAG
1761 ATCCAGAAGCTGCTGAGCCTGATCTTAGTGCCTTCTCCTTTCTCTGTGTGGCCCCCCAGCCCCTTTCCCCACTGCCTTGT
1841 GTCCAAGGCCCTTTCCTTCATGTATCCATGGAGGAGAGACAAAAATACACATCAATAAAATAAGATAGGGAATCCATAAA
1921 TAGACATTCAGAAGTATGGCCAACGGATTTATCTTAAAACCAATGGAGGAAGAAGAGTTTCAATAAATGTTGTGGACTTC
2001 CATTTGTCAAAGACCAAAACAAAGGAACCCCAACCTTACATGTAATACAAACTTAACTCAAAATGGATCATATATCTAAA
2081 TGTAAAATGGAAAGCTATAAAACTGAAAACAGACTATCTTTACAACCTAGGCGTAGGTATAGTTTTTAGACATTACACCA
2161 AAAGCACATGCCGTAAAAGAAAAAATAGATAAATTGGTGGATTTCATTAAAATTAAAAAACTTTTTCTCTCTGAAAAATC
2241 CTGTTAAGCTGGGCGCTGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGTTGGGAAGAAATTAATAGCTTGA
2321 GGCCAGGAGTTCAAGATCATCCTGGGCAGCAAAGTCATACACTCTTGAGGGAAGAGAGAGACCTTCTCATATTGTTTTAT
2401 ATTGTTTTATACTCAGTACCTGTTTTAAGAAAAAAACAAGGAAGTGAAATCAAAGACAGGCAGCCCGGCACCAGGCCTGA
2481 AACCAGCCCTGGGCCTGCCTGGCCTAAACCTAGTAGTTAAAAATCAACTTACGACTTAGAACCTGATGTTATCCGTAGAT
2561 TCCAAGCATTGTATAAAAAAATTGTGAAACTCCCTGTTGTGTTCTGTACCAGTGCATGAAACCCCTGTCACATATCCCCT
2641 AGATTGCTCAATCAATCACGACCCTTTCATGTGAAATCTTTAGTGTTGTGAGCCCTTAAAAGGGACAGAAATTGTGCACT
2721 TGAGGAGCTCAGATTTTAAGGCTGTAGCTTGCCGATGCTCCCAGCTGAATAAAGCCCTTCCTTCTACAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUAC----GUUUAAAAu 5'
            || || |    ||:||||| 
Target 5' caCTTGAGGAGCTCAGATTTTa 3'
2717 - 2738 134.00 -9.10
2
miRNA  3' aggaccUACGUUUAAAAu 5'
                |||:::||||| 
Target 5' gagtacATGTGGATTTTg 3'
773 - 790 124.00 -5.90
3
miRNA  3' aggaccuacguUUAAAAu 5'
                     |||||| 
Target 5' ggacctgtaccAATTTTa 3'
147 - 164 120.00 -6.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30506957 8 COSMIC
COSN30520179 9 COSMIC
COSN31494431 9 COSMIC
COSN30162841 24 COSMIC
COSN30141947 30 COSMIC
COSN216894 37 COSMIC
COSN31561433 61 COSMIC
COSN30129736 108 COSMIC
COSN30113089 175 COSMIC
COSN17420912 497 COSMIC
COSN18718759 639 COSMIC
COSN20101463 661 COSMIC
COSN9957824 698 COSMIC
COSN9192737 783 COSMIC
COSN30564921 797 COSMIC
COSN24310231 799 COSMIC
COSN32055826 893 COSMIC
COSN9957823 923 COSMIC
COSN20906229 953 COSMIC
COSN30652419 968 COSMIC
COSN21789521 1107 COSMIC
COSN32188941 1433 COSMIC
COSN20465771 1551 COSMIC
COSN6928526 2095 COSMIC
COSN25230209 2405 COSMIC
COSN20813309 2555 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1280360695 3 dbSNP
rs764262074 4 dbSNP
rs975405635 9 dbSNP
rs1267875150 11 dbSNP
rs1330352175 12 dbSNP
rs763166421 14 dbSNP
rs376211274 16 dbSNP
rs770134617 17 dbSNP
rs1205986958 18 dbSNP
rs776974665 19 dbSNP
rs759560792 21 dbSNP
rs767461511 23 dbSNP
rs746451994 31 dbSNP
rs9099 32 dbSNP
rs1019515799 38 dbSNP
rs1196061908 41 dbSNP
rs1274129744 50 dbSNP
rs760374810 50 dbSNP
rs1491091063 51 dbSNP
rs41271129 54 dbSNP
rs1481064716 58 dbSNP
rs1192995312 63 dbSNP
rs1421633848 69 dbSNP
rs117973167 70 dbSNP
rs1168771123 71 dbSNP
rs751479867 72 dbSNP
rs938776798 72 dbSNP
rs549359010 77 dbSNP
rs226201 82 dbSNP
rs563620245 83 dbSNP
rs1327735132 86 dbSNP
rs920059794 88 dbSNP
rs1283168885 90 dbSNP
rs904535082 92 dbSNP
rs964267386 93 dbSNP
rs1405172105 94 dbSNP
rs1022812622 95 dbSNP
rs1017703244 101 dbSNP
rs756755096 105 dbSNP
rs1467273750 106 dbSNP
rs1261107853 107 dbSNP
rs370274110 111 dbSNP
rs559578673 113 dbSNP
rs954509439 114 dbSNP
rs1169173724 116 dbSNP
rs1428637173 117 dbSNP
rs148943823 119 dbSNP
rs748331606 120 dbSNP
rs1191127189 124 dbSNP
rs1387051917 126 dbSNP
rs1382239356 127 dbSNP
rs559641678 130 dbSNP
rs1247774112 131 dbSNP
rs1460318616 135 dbSNP
rs377409156 136 dbSNP
rs115091162 139 dbSNP
rs547411070 140 dbSNP
rs1204652739 143 dbSNP
rs768670987 144 dbSNP
rs1021374555 150 dbSNP
rs1011465615 152 dbSNP
rs1048181990 153 dbSNP
rs1460132024 154 dbSNP
rs1484375257 159 dbSNP
rs930928762 162 dbSNP
rs80220222 168 dbSNP
rs975132663 172 dbSNP
rs1385624156 178 dbSNP
rs1438776123 181 dbSNP
rs1156624569 196 dbSNP
rs1365419454 197 dbSNP
rs1056102962 200 dbSNP
rs938719062 201 dbSNP
rs943597320 206 dbSNP
rs780511496 207 dbSNP
rs907193378 216 dbSNP
rs1047174742 220 dbSNP
rs930007952 223 dbSNP
rs765362746 229 dbSNP
rs115446832 232 dbSNP
rs1243694858 233 dbSNP
rs942834298 239 dbSNP
rs911502751 240 dbSNP
rs1255474517 242 dbSNP
rs987457740 243 dbSNP
rs756523782 252 dbSNP
rs226202 259 dbSNP
rs1030375891 267 dbSNP
rs745677804 267 dbSNP
rs977143204 271 dbSNP
rs1175229080 275 dbSNP
rs1315497767 277 dbSNP
rs1397521342 279 dbSNP
rs967075797 289 dbSNP
rs978833841 294 dbSNP
rs555019818 295 dbSNP
rs1470632593 300 dbSNP
rs968662186 300 dbSNP
rs1399034971 302 dbSNP
rs1011391921 303 dbSNP
rs958765100 304 dbSNP
rs1034308088 312 dbSNP
rs1392473317 313 dbSNP
rs1301102220 314 dbSNP
rs1344185435 318 dbSNP
rs1225373749 321 dbSNP
rs1263869707 325 dbSNP
rs1003192571 330 dbSNP
rs1202760495 331 dbSNP
rs1161066469 338 dbSNP
rs907205583 347 dbSNP
rs1023374461 348 dbSNP
rs1012945195 352 dbSNP
rs1385109372 353 dbSNP
rs1266616937 355 dbSNP
rs757036510 357 dbSNP
rs1199467412 375 dbSNP
rs1425974777 376 dbSNP
rs1407844213 377 dbSNP
rs1172170237 378 dbSNP
rs1248847577 380 dbSNP
rs994267709 381 dbSNP
rs1481046354 388 dbSNP
rs1364206717 392 dbSNP
rs1407344881 394 dbSNP
rs146325047 394 dbSNP
rs1213026532 396 dbSNP
rs1297913024 398 dbSNP
rs1220287019 402 dbSNP
rs1035648072 403 dbSNP
rs942886589 406 dbSNP
rs1223208621 409 dbSNP
rs911371633 411 dbSNP
rs1474100256 412 dbSNP
rs1051359521 414 dbSNP
rs1419725772 415 dbSNP
rs1358680719 418 dbSNP
rs1422910127 419 dbSNP
rs1292462576 425 dbSNP
rs1364153675 427 dbSNP
rs748935311 429 dbSNP
rs1427100636 430 dbSNP
rs115908700 436 dbSNP
rs766552466 443 dbSNP
rs1305941766 445 dbSNP
rs553683492 446 dbSNP
rs931035682 447 dbSNP
rs1228008402 448 dbSNP
rs752338575 451 dbSNP
rs1312626173 453 dbSNP
rs967003741 456 dbSNP
rs899605012 463 dbSNP
rs1285142097 466 dbSNP
rs1423493046 466 dbSNP
rs914345529 467 dbSNP
rs989854253 469 dbSNP
rs764863509 471 dbSNP
rs1459896637 474 dbSNP
rs943751113 475 dbSNP
rs754504493 477 dbSNP
rs1034560826 478 dbSNP
rs1473054827 479 dbSNP
rs115865525 480 dbSNP
rs1399501154 488 dbSNP
rs934806084 491 dbSNP
rs1197500888 496 dbSNP
rs924795914 505 dbSNP
rs1452183184 506 dbSNP
rs1490221634 508 dbSNP
rs994195689 509 dbSNP
rs1290675064 511 dbSNP
rs763141615 512 dbSNP
rs1038497359 514 dbSNP
rs763956603 516 dbSNP
rs1225444490 518 dbSNP
rs1259948883 522 dbSNP
rs968755520 530 dbSNP
rs1201239610 531 dbSNP
rs1330907042 533 dbSNP
rs1051675604 543 dbSNP
rs916037542 550 dbSNP
rs550435932 551 dbSNP
rs991892166 557 dbSNP
rs570996676 561 dbSNP
rs1160869971 562 dbSNP
rs772883362 564 dbSNP
rs1345670943 566 dbSNP
rs960078383 570 dbSNP
rs1408518055 582 dbSNP
rs1470446868 585 dbSNP
rs1327912397 599 dbSNP
rs1333825381 601 dbSNP
rs1035978949 605 dbSNP
rs1004153819 606 dbSNP
rs1280000705 612 dbSNP
rs1344819352 617 dbSNP
rs1221107752 620 dbSNP
rs1324875504 627 dbSNP
rs951167273 630 dbSNP
rs147619790 637 dbSNP
rs995375771 638 dbSNP
rs761960731 639 dbSNP
rs1458132815 640 dbSNP
rs927163156 646 dbSNP
rs981713957 648 dbSNP
rs1174626862 649 dbSNP
rs971238523 655 dbSNP
rs1025607075 656 dbSNP
rs972637329 657 dbSNP
rs1431600634 658 dbSNP
rs202144799 661 dbSNP
rs11346477 662 dbSNP
rs199624866 662 dbSNP
rs780650819 662 dbSNP
rs1167627060 664 dbSNP
rs1411392181 665 dbSNP
rs1039462054 666 dbSNP
rs1247377711 667 dbSNP
rs1008268657 669 dbSNP
rs1201028009 674 dbSNP
rs1403074168 675 dbSNP
rs890813604 682 dbSNP
rs1261000346 685 dbSNP
rs1016906328 688 dbSNP
rs1209249205 689 dbSNP
rs369119568 694 dbSNP
rs1341060987 709 dbSNP
rs1197882951 710 dbSNP
rs1466131281 715 dbSNP
rs1261021725 720 dbSNP
rs1052418636 722 dbSNP
rs1192581185 725 dbSNP
rs1029733610 727 dbSNP
rs998784111 728 dbSNP
rs531318449 734 dbSNP
rs114760099 735 dbSNP
rs141015769 736 dbSNP
rs1304806290 740 dbSNP
rs1224563439 741 dbSNP
rs1366125476 744 dbSNP
rs1325320187 748 dbSNP
rs1381111928 753 dbSNP
rs1315643430 754 dbSNP
rs1352885727 764 dbSNP
rs1309218951 770 dbSNP
rs1327798419 773 dbSNP
rs1282565456 778 dbSNP
rs1043205157 779 dbSNP
rs1227768861 781 dbSNP
rs1298777473 782 dbSNP
rs758052880 782 dbSNP
rs1359259559 783 dbSNP
rs747813039 784 dbSNP
rs1295937864 785 dbSNP
rs530322454 791 dbSNP
rs1294514778 792 dbSNP
rs774514434 794 dbSNP
rs892804957 798 dbSNP
rs1204596407 804 dbSNP
rs1175483938 808 dbSNP
rs113840817 813 dbSNP
rs532640443 815 dbSNP
rs775039042 816 dbSNP
rs1242762392 825 dbSNP
rs1182860895 830 dbSNP
rs139201647 838 dbSNP
rs981214365 839 dbSNP
rs991593443 844 dbSNP
rs1483718102 848 dbSNP
rs1262691621 849 dbSNP
rs766202856 851 dbSNP
rs756109896 852 dbSNP
rs1289366220 856 dbSNP
rs1179660493 857 dbSNP
rs1473478178 861 dbSNP
rs1380143480 863 dbSNP
rs1239037613 866 dbSNP
rs949958800 873 dbSNP
rs1334450334 876 dbSNP
rs1304240963 877 dbSNP
rs1397230032 879 dbSNP
rs771838695 883 dbSNP
rs1335733967 884 dbSNP
rs1467874703 885 dbSNP
rs1390646166 887 dbSNP
rs751529685 888 dbSNP
rs1469566317 890 dbSNP
rs76062650 893 dbSNP
rs1189730315 894 dbSNP
rs1424519753 896 dbSNP
rs1242574220 898 dbSNP
rs1202079579 900 dbSNP
rs982802279 901 dbSNP
rs1466415804 902 dbSNP
rs760997828 908 dbSNP
rs115286258 911 dbSNP
rs185816437 917 dbSNP
rs748920200 919 dbSNP
rs576619519 920 dbSNP
rs1185163059 926 dbSNP
rs1016959196 928 dbSNP
rs985893417 930 dbSNP
rs1026935676 932 dbSNP
rs554957205 933 dbSNP
rs1297693060 938 dbSNP
rs954052737 941 dbSNP
rs1030197481 950 dbSNP
rs995303609 951 dbSNP
rs1313415503 952 dbSNP
rs1452419382 953 dbSNP
rs1470777204 960 dbSNP
rs151065552 962 dbSNP
rs902696854 965 dbSNP
rs1305416084 969 dbSNP
rs746320084 970 dbSNP
rs1336460883 981 dbSNP
rs1229035504 983 dbSNP
rs1262629242 984 dbSNP
rs1321646129 987 dbSNP
rs1011128825 988 dbSNP
rs1408420381 988 dbSNP
rs1256361747 989 dbSNP
rs1193872013 990 dbSNP
rs1480148856 990 dbSNP
rs1007990087 991 dbSNP
rs572244093 992 dbSNP
rs142846049 1000 dbSNP
rs1426660715 1006 dbSNP
rs905519976 1011 dbSNP
rs1176426359 1012 dbSNP
rs771280234 1025 dbSNP
rs1296837589 1037 dbSNP
rs538436185 1041 dbSNP
rs1451282406 1042 dbSNP
rs1383263565 1046 dbSNP
rs903439639 1047 dbSNP
rs1343790385 1052 dbSNP
rs1225431251 1055 dbSNP
rs1182880518 1067 dbSNP
rs949745755 1069 dbSNP
rs747790048 1071 dbSNP
rs1036836061 1073 dbSNP
rs941159346 1089 dbSNP
rs778684718 1095 dbSNP
rs768051624 1099 dbSNP
rs916101130 1100 dbSNP
rs181981857 1101 dbSNP
rs1238975187 1104 dbSNP
rs1056257147 1112 dbSNP
rs1490679065 1113 dbSNP
rs938769381 1115 dbSNP
rs1191288358 1118 dbSNP
rs1418300542 1129 dbSNP
rs1426406844 1130 dbSNP
rs1168745877 1131 dbSNP
rs1436804382 1132 dbSNP
rs1430948731 1135 dbSNP
rs1303003837 1138 dbSNP
rs879567521 1139 dbSNP
rs754592150 1142 dbSNP
rs1274761506 1143 dbSNP
rs1206629015 1145 dbSNP
rs928749097 1150 dbSNP
rs985392137 1157 dbSNP
rs982770984 1166 dbSNP
rs148986333 1169 dbSNP
rs114717180 1178 dbSNP
rs779638600 1179 dbSNP
rs964188624 1184 dbSNP
rs1286250312 1188 dbSNP
rs567067872 1194 dbSNP
rs548690760 1195 dbSNP
rs1221618275 1202 dbSNP
rs1350055107 1205 dbSNP
rs146836349 1206 dbSNP
rs1450414139 1207 dbSNP
rs79838731 1216 dbSNP
rs1363765743 1217 dbSNP
rs1162916585 1220 dbSNP
rs1407613647 1230 dbSNP
rs1405879062 1233 dbSNP
rs190789565 1237 dbSNP
rs1002425970 1238 dbSNP
rs903534034 1243 dbSNP
rs1451588661 1245 dbSNP
rs561597554 1247 dbSNP
rs1228874219 1248 dbSNP
rs185147754 1248 dbSNP
rs1282934780 1249 dbSNP
rs1469336063 1250 dbSNP
rs77029712 1254 dbSNP
rs894751632 1259 dbSNP
rs559939300 1260 dbSNP
rs1055962781 1261 dbSNP
rs1489669186 1267 dbSNP
rs565439147 1268 dbSNP
rs769224216 1270 dbSNP
rs938881442 1272 dbSNP
rs180706484 1274 dbSNP
rs907250101 1275 dbSNP
rs1398967905 1280 dbSNP
rs531839248 1282 dbSNP
rs929936184 1284 dbSNP
rs868013413 1285 dbSNP
rs1334427753 1286 dbSNP
rs1448484963 1289 dbSNP
rs1278824193 1293 dbSNP
rs1371118977 1306 dbSNP
rs1050113377 1308 dbSNP
rs1288474547 1309 dbSNP
rs1322376234 1312 dbSNP
rs1201451069 1313 dbSNP
rs1292500071 1313 dbSNP
rs562070696 1318 dbSNP
rs1261659610 1319 dbSNP
rs774170582 1321 dbSNP
rs561474698 1322 dbSNP
rs942614203 1329 dbSNP
rs911168985 1331 dbSNP
rs796407541 1336 dbSNP
rs1184408468 1353 dbSNP
rs1412862936 1360 dbSNP
rs751831788 1361 dbSNP
rs976809811 1362 dbSNP
rs542642477 1366 dbSNP
rs1174461092 1370 dbSNP
rs1404634440 1374 dbSNP
rs1343793417 1377 dbSNP
rs1292949668 1378 dbSNP
rs1030669597 1379 dbSNP
rs977830386 1382 dbSNP
rs1352661101 1385 dbSNP
rs1411640418 1386 dbSNP
rs1308098617 1393 dbSNP
rs139838621 1396 dbSNP
rs368377629 1396 dbSNP
rs1156801017 1397 dbSNP
rs878945736 1399 dbSNP
rs989517800 1400 dbSNP
rs879017730 1401 dbSNP
rs967660521 1403 dbSNP
rs1345312786 1409 dbSNP
rs1033813152 1411 dbSNP
rs1272799551 1413 dbSNP
rs1436561092 1422 dbSNP
rs1208000724 1423 dbSNP
rs1253167343 1424 dbSNP
rs1490189975 1427 dbSNP
rs1021905709 1429 dbSNP
rs1197387210 1430 dbSNP
rs1012351923 1432 dbSNP
rs764290585 1433 dbSNP
rs1035020361 1434 dbSNP
rs1167085014 1441 dbSNP
rs1003002153 1446 dbSNP
rs1025634213 1451 dbSNP
rs1428001696 1455 dbSNP
rs1191222146 1457 dbSNP
rs551171850 1458 dbSNP
rs1013951311 1459 dbSNP
rs1489113426 1463 dbSNP
rs1036816218 1464 dbSNP
rs572435730 1466 dbSNP
rs770767960 1467 dbSNP
rs1214253240 1472 dbSNP
rs1340392048 1473 dbSNP
rs1231090856 1478 dbSNP
rs888277637 1479 dbSNP
rs1208105557 1481 dbSNP
rs1464775354 1483 dbSNP
rs1049554655 1484 dbSNP
rs1230913031 1485 dbSNP
rs544906731 1487 dbSNP
rs930030841 1490 dbSNP
rs932572467 1495 dbSNP
rs1216377827 1497 dbSNP
rs901114564 1498 dbSNP
rs1321605102 1503 dbSNP
rs1164476895 1504 dbSNP
rs1300714001 1505 dbSNP
rs898604624 1510 dbSNP
rs1369789662 1511 dbSNP
rs1315713221 1513 dbSNP
rs1366943359 1513 dbSNP
rs796666067 1513 dbSNP
rs1038370049 1518 dbSNP
rs1298852270 1519 dbSNP
rs763091564 1522 dbSNP
rs1434269684 1524 dbSNP
rs1267300237 1526 dbSNP
rs1357063430 1527 dbSNP
rs1204645318 1532 dbSNP
rs226203 1534 dbSNP
rs544859984 1536 dbSNP
rs1051456871 1541 dbSNP
rs1188934859 1542 dbSNP
rs933817804 1544 dbSNP
rs1288753379 1546 dbSNP
rs577515485 1547 dbSNP
rs923790871 1551 dbSNP
rs1189448612 1554 dbSNP
rs1368997963 1556 dbSNP
rs1015155180 1558 dbSNP
rs1156333913 1565 dbSNP
rs977926218 1568 dbSNP
rs967755395 1569 dbSNP
rs1390345500 1571 dbSNP
rs1457486995 1578 dbSNP
rs555934439 1579 dbSNP
rs769855640 1581 dbSNP
rs1355723981 1582 dbSNP
rs1394661485 1583 dbSNP
rs926798750 1583 dbSNP
rs1341619310 1584 dbSNP
rs1238374049 1586 dbSNP
rs1286578957 1590 dbSNP
rs1331461406 1591 dbSNP
rs990464979 1596 dbSNP
rs959298288 1598 dbSNP
rs1262752048 1599 dbSNP
rs1176300202 1601 dbSNP
rs980993057 1609 dbSNP
rs1034582972 1610 dbSNP
rs1256721137 1612 dbSNP
rs1025263965 1614 dbSNP
rs1003548302 1617 dbSNP
rs537688729 1619 dbSNP
rs971667833 1620 dbSNP
rs1025798664 1625 dbSNP
rs994377432 1626 dbSNP
rs1015227880 1628 dbSNP
rs1306251527 1630 dbSNP
rs898573545 1630 dbSNP
rs888172330 1633 dbSNP
rs780820319 1636 dbSNP
rs1210926042 1637 dbSNP
rs573384562 1644 dbSNP
rs1460234794 1651 dbSNP
rs1282825966 1652 dbSNP
rs1028473233 1659 dbSNP
rs1256418098 1662 dbSNP
rs996732785 1664 dbSNP
rs759984781 1665 dbSNP
rs1203019056 1671 dbSNP
rs1255678205 1679 dbSNP
rs555466412 1681 dbSNP
rs777157536 1682 dbSNP
rs1264781957 1683 dbSNP
rs116590235 1685 dbSNP
rs1050996678 1699 dbSNP
rs1227587311 1701 dbSNP
rs1461797287 1703 dbSNP
rs1053686035 1704 dbSNP
rs189861907 1706 dbSNP
rs1302672849 1708 dbSNP
rs777431132 1709 dbSNP
rs926750941 1732 dbSNP
rs981260887 1736 dbSNP
rs1301715036 1737 dbSNP
rs551100066 1738 dbSNP
rs769375234 1742 dbSNP
rs748711794 1743 dbSNP
rs972310239 1744 dbSNP
rs1221054571 1749 dbSNP
rs923885527 1750 dbSNP
rs1191343482 1751 dbSNP
rs1260622305 1751 dbSNP
rs771247155 1753 dbSNP
rs1187098646 1757 dbSNP
rs1391366942 1759 dbSNP
rs1392533932 1763 dbSNP
rs1431002009 1768 dbSNP
rs539292520 1771 dbSNP
rs1042203477 1775 dbSNP
rs1348279511 1784 dbSNP
rs1459513891 1786 dbSNP
rs1191031356 1790 dbSNP
rs983815350 1800 dbSNP
rs1361556357 1804 dbSNP
rs1432589349 1805 dbSNP
rs1299603137 1811 dbSNP
rs1365814164 1812 dbSNP
rs572018614 1812 dbSNP
rs914954809 1814 dbSNP
rs1322934894 1817 dbSNP
rs139296887 1818 dbSNP
rs1259737039 1819 dbSNP
rs990993126 1835 dbSNP
rs1463298404 1839 dbSNP
rs959039989 1840 dbSNP
rs1250355332 1845 dbSNP
rs901011358 1846 dbSNP
rs866738778 1849 dbSNP
rs1484325467 1850 dbSNP
rs1009452695 1856 dbSNP
rs892412030 1860 dbSNP
rs1053614122 1865 dbSNP
rs1000912449 1868 dbSNP
rs1322287096 1871 dbSNP
rs905183640 1877 dbSNP
rs1045162081 1878 dbSNP
rs1204471976 1880 dbSNP
rs981823329 1889 dbSNP
rs1228360001 1890 dbSNP
rs1305729490 1891 dbSNP
rs550389337 1893 dbSNP
rs1268374435 1904 dbSNP
rs1025935991 1906 dbSNP
rs1243666212 1908 dbSNP
rs1036501087 1909 dbSNP
rs940825423 1911 dbSNP
rs1182500432 1931 dbSNP
rs909505529 1931 dbSNP
rs985440265 1938 dbSNP
rs1412998211 1942 dbSNP
rs1413656322 1944 dbSNP
rs994303508 1945 dbSNP
rs1360802243 1956 dbSNP
rs1448739041 1964 dbSNP
rs962875094 1971 dbSNP
rs531979022 1974 dbSNP
rs1348015981 1975 dbSNP
rs184964013 1979 dbSNP
rs975207578 1983 dbSNP
rs1322437861 1987 dbSNP
rs1306990009 1989 dbSNP
rs549431836 1992 dbSNP
rs527800355 2000 dbSNP
rs1409953101 2001 dbSNP
rs1277012627 2002 dbSNP
rs746752013 2002 dbSNP
rs889907659 2008 dbSNP
rs1051518348 2009 dbSNP
rs1371851721 2015 dbSNP
rs868246583 2019 dbSNP
rs1251740510 2033 dbSNP
rs902401809 2035 dbSNP
rs1456780438 2040 dbSNP
rs1184472750 2042 dbSNP
rs1252768766 2053 dbSNP
rs1477795896 2055 dbSNP
rs560448766 2060 dbSNP
rs1042285839 2061 dbSNP
rs1426926524 2062 dbSNP
rs374061788 2065 dbSNP
rs1167948336 2084 dbSNP
rs1368609857 2090 dbSNP
rs564919108 2092 dbSNP
rs1425810461 2096 dbSNP
rs1009380508 2104 dbSNP
rs946527405 2105 dbSNP
rs956535189 2110 dbSNP
rs1273445987 2112 dbSNP
rs1235459457 2113 dbSNP
rs1347658967 2113 dbSNP
rs768427508 2126 dbSNP
rs1054994401 2131 dbSNP
rs1340612477 2132 dbSNP
rs937738946 2133 dbSNP
rs927774671 2134 dbSNP
rs1483456796 2139 dbSNP
rs1197110316 2140 dbSNP
rs1248659416 2148 dbSNP
rs981765635 2148 dbSNP
rs1187663356 2149 dbSNP
rs112522113 2152 dbSNP
rs1431495296 2158 dbSNP
rs1009588590 2159 dbSNP
rs1168689512 2160 dbSNP
rs779729041 2168 dbSNP
rs190122775 2172 dbSNP
rs184450167 2173 dbSNP
rs1053252 2179 dbSNP
rs1442145157 2181 dbSNP
rs1297265459 2185 dbSNP
rs1246668676 2186 dbSNP
rs758317577 2192 dbSNP
rs1287391032 2195 dbSNP
rs1017508878 2196 dbSNP
rs1208114048 2205 dbSNP
rs1355806202 2205 dbSNP
rs1410047419 2206 dbSNP
rs1036428409 2207 dbSNP
rs1207899323 2210 dbSNP
rs940874795 2214 dbSNP
rs1245901129 2220 dbSNP
rs1451257081 2221 dbSNP
rs909348450 2222 dbSNP
rs985672019 2225 dbSNP
rs1049323754 2227 dbSNP
rs1385614851 2228 dbSNP
rs932205325 2229 dbSNP
rs920952454 2233 dbSNP
rs975513794 2239 dbSNP
rs6893272 2241 dbSNP
rs1386995784 2242 dbSNP
rs1437710521 2245 dbSNP
rs1296980624 2254 dbSNP
rs1029784249 2255 dbSNP
rs55951719 2256 dbSNP
rs555288713 2260 dbSNP
rs987841037 2261 dbSNP
rs140169325 2267 dbSNP
rs1032550482 2271 dbSNP
rs192583036 2275 dbSNP
rs1473005751 2279 dbSNP
rs187741890 2298 dbSNP
rs1414300767 2300 dbSNP
rs969680025 2302 dbSNP
rs755480979 2305 dbSNP
rs1020806689 2309 dbSNP
rs1196790360 2310 dbSNP
rs1255431567 2311 dbSNP
rs1023537033 2312 dbSNP
rs1189038715 2319 dbSNP
rs1010761115 2321 dbSNP
rs1471976894 2327 dbSNP
rs1156579964 2335 dbSNP
rs893754041 2341 dbSNP
rs757062146 2342 dbSNP
rs1289777562 2351 dbSNP
rs1402146976 2360 dbSNP
rs937898772 2361 dbSNP
rs1394739568 2363 dbSNP
rs1211549233 2374 dbSNP
rs906236289 2382 dbSNP
rs1463427988 2384 dbSNP
rs1046187008 2386 dbSNP
rs1356249143 2388 dbSNP
rs751355071 2392 dbSNP
rs1286740952 2397 dbSNP
rs1331442636 2397 dbSNP
rs896481828 2401 dbSNP
rs144349152 2412 dbSNP
rs202071103 2412 dbSNP
rs1342795521 2425 dbSNP
rs1004933835 2427 dbSNP
rs539481475 2430 dbSNP
rs1258125187 2439 dbSNP
rs887966395 2440 dbSNP
rs1179350411 2453 dbSNP
rs1231939222 2457 dbSNP
rs146195968 2458 dbSNP
rs1419252237 2460 dbSNP
rs1160304612 2461 dbSNP
rs111309881 2466 dbSNP
rs932157236 2467 dbSNP
rs973087659 2483 dbSNP
rs900775119 2484 dbSNP
rs1429230132 2487 dbSNP
rs1040627874 2490 dbSNP
rs1352581056 2500 dbSNP
rs1053173 2509 dbSNP
rs1300845395 2523 dbSNP
rs1329193934 2523 dbSNP
rs943739052 2525 dbSNP
rs910168903 2527 dbSNP
rs567815940 2532 dbSNP
rs1341322445 2533 dbSNP
rs1202435425 2537 dbSNP
rs1276082608 2544 dbSNP
rs751919244 2552 dbSNP
rs765265033 2554 dbSNP
rs549312525 2555 dbSNP
rs1431848180 2561 dbSNP
rs1457990419 2566 dbSNP
rs527779614 2567 dbSNP
rs1171009445 2569 dbSNP
rs1372563448 2582 dbSNP
rs1429613710 2582 dbSNP
rs966791669 2582 dbSNP
rs759632552 2588 dbSNP
rs1010896738 2594 dbSNP
rs1293210512 2596 dbSNP
rs1388330232 2599 dbSNP
rs1303812330 2604 dbSNP
rs1477772203 2606 dbSNP
rs1225996355 2607 dbSNP
rs3739 2617 dbSNP
rs551344466 2618 dbSNP
rs1263351478 2627 dbSNP
rs527401607 2627 dbSNP
rs1489232140 2632 dbSNP
rs3738 2635 dbSNP
rs372199135 2636 dbSNP
rs1002412110 2639 dbSNP
rs992043814 2645 dbSNP
rs935825380 2646 dbSNP
rs1187292910 2651 dbSNP
rs547668354 2653 dbSNP
rs960699859 2654 dbSNP
rs150537472 2655 dbSNP
rs1046155297 2659 dbSNP
rs1164123915 2659 dbSNP
rs1027722635 2660 dbSNP
rs1345197009 2664 dbSNP
rs1432618143 2668 dbSNP
rs996790179 2672 dbSNP
rs1362531082 2673 dbSNP
rs1227270580 2678 dbSNP
rs183822235 2679 dbSNP
rs1309894858 2680 dbSNP
rs1323153636 2681 dbSNP
rs993226470 2687 dbSNP
rs1267087785 2689 dbSNP
rs897605409 2692 dbSNP
rs1464769777 2693 dbSNP
rs1041033364 2707 dbSNP
rs944917809 2714 dbSNP
rs1297368519 2715 dbSNP
rs1181369295 2719 dbSNP
rs1037361180 2720 dbSNP
rs941742300 2721 dbSNP
rs750740921 2728 dbSNP
rs1411479382 2732 dbSNP
rs1455478002 2740 dbSNP
rs1436333132 2744 dbSNP
rs532261082 2753 dbSNP
rs890807519 2754 dbSNP
rs1052020242 2756 dbSNP
rs1301012139 2760 dbSNP
rs1265877108 2763 dbSNP
rs561874719 2764 dbSNP
rs1287376636 2774 dbSNP
rs1414844478 2774 dbSNP
rs1326596234 2778 dbSNP
rs1226967300 2779 dbSNP
rs934984369 2786 dbSNP
rs1332517279 2788 dbSNP
rs540101885 2789 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6228.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000296674.8 | 3UTR | AAAACACUGUAGUAAUAAAUUUUCAUAUGCCAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000296674.8 | 3UTR | AAAACACUGUAGUAAUAAAUUUUCAUAUGCCAAAAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000296674.8 | 3UTR | UAAUAAAUUUUCAUAUGCCAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000296674.8 | 3UTR | ACACUGUAGUAAUAAAUUUUCAUAUGCCAAAAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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