miRTarBase - #MIRT510064


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pre-miRNA Information
pre-miRNA hsa-mir-6131   
Genomic Coordinates chr5: 10478037 - 10478145
Description Homo sapiens miR-6131 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6131
Sequence 71| GGCUGGUCAGAUGGGAGUG |89
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 11 5 + 10478117 29233923 MiREDiBase
A-to-I 16 5 + 10478122 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs957913380 1 dbSNP
rs996083508 3 dbSNP
rs1304832380 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C12orf49   
Synonyms -
Description chromosome 12 open reading frame 49
Transcript NM_024738   
Expression
Putative miRNA Targets on C12orf49
3'UTR of C12orf49
(miRNA target sites are highlighted)		 
>C12orf49|NM_024738|3'UTR
   1 CGGGTGCAGCGGACTTGCTCCAGCCTGGGTGAGGAGGCCCCGCTGAAGAACTCGCCTCCTGGGACCCAGCTTCAGCCATC
  81 GGGCCAGGCTGCAGGAAGAAGACAAAGGCAGCGTGAGGAAACCTTGGCTTTGACCCCTTCTCGTGTTGTCATCTTTGGCT
 161 TCGCTCACCACCCGGGCTTACCAGATGGAACTCTTCTGTAAAGCAGCTTGGCCCCTCCAGCCAGTCCCATTCGGGAAAGA
 241 TGAAACCGGAGGCCGGGCTCACGGTGGTGGTGGAGTTCTTGGATGACTCAGCCCTGGGACCTGCACAGGGACCTGTGACT
 321 TGTGTTCATCGGGGGCCGGTGTCACTTCCAGTTTTGATCCAGGCTCTTTCACTGTAAAATTATTTATTGGATTCCTTTGG
 401 AGTAATGGGAACATTCTAATGTTTTATGTAGGAAAATGCCTTGCCATTCTAGTTGAATATGTTCAAGGAAATTATTTTTG
 481 TTGTTGTTCTGTGTTCTCGAGTTTCAGGAGTTAAATCATTCTTCCACCCAGATACAACATTTTCTCTTTTAGGACGTGAA
 561 TATTCTCTCTAGGCAGTTATTTTTGTTTGTATTTCGACAGTATCAAGCATAGGCCCTGAACGTGACCTGTTAGCCATATC
 641 CTGACGTGTAAAATTATCTAAAAACTCAGACACTCTTCCATTCTAATCTAACTGCACGATTTCTAACAGTGGGCACCATG
 721 TGCCTGCCCTCAGGTTATTTTCCAGTGGTAGTCGAATGTGCTCATATACCCTATGGAGAGCACTGTTTTAGCAGAAATCT
 801 AATTTCTCTTCCTGGAGGAATTTGTTCTCATTTCTTTTGCCACTTAAAATTAACTGTGGGCTACTCAGCCAGGGTACAGT
 881 GGGAGCCTCAGGAAGGTCAGAGGCAACCTCCTCCCCTGTTCTATCAATAGAAACCCAACGTTGAGGCAATTCCTAAACAG
 961 ACGCACCTCGTAGCTTGCTGTATGTGTTTATTCTTTATTGCTTTCAGCTTTGGGGCTGTAACAGGTACAAATATTTGGTT
1041 TCCCTATGATTTATAGAGAAGAAGAAGAAACCCAGCTTTCTATCAGAGCACTGCAAGAGAAGAGTCTTACACCTGCCCTC
1121 AGTGGGAGATGAGAATGGTCATTATGACTTAGAGAATGCTACACGTGTAGGTTGCTGGTGTGTCCTGAATCCACAGGCAT
1201 AAAGCACTCCCCATTTTTCCTACTGTAATGCAGATTCTCCGGCTCAAGGTCTAGAATATTTGATCCTAAGATCAAGACAT
1281 CATGCCCTTCGAATAGTACTGCTCTTTGTTTTCAGGAGTCACGTGAACACACAACTCTCCTATATTCCTCACGAACCTCA
1361 GGATTGAGCAAGGTCTTTGTAATTTTTTTGGTTCACTTTATTGACCTGGGAGCAAGGTGCTAATTCTGTGGTCAGTATTC
1441 AATGTTTTTTTCAGTGGAGCTTTTTCTTTGGGCCATATTTGCCTTCTAATACATTCCTGCAATATGTAGTGGTGATTTCC
1521 CTTAGCTTCCTCCTACTACCTCTTATACTCATCTCCCCAAATTATTTGCCTCCCTTAAATAAGTTTTCCTAGAAGGTAAG
1601 CTGGTCAGGCAATTTGAAAAATATTAGATCCCAAGAAATCTATTCCGTTTGCATTGGACTTCTCGGATTCCATGTGTTTG
1681 CAGCAGGACTACATCGAACTCTGATGTGCCGGATTGTGGCATGTCTGCATGTCTCATCCATCTATTGTTTTTGGTAACTC
1761 AGTTTGGAATTTCAGTGTCTGTCTTCCCTGGGTTGACATTGGAATCAGCCTCTCCTTTGAGCTTATTTTAACTCTTGAGC
1841 AACATAACATAGATTTAATGTGAACAGTTTATACCAAAGGGCAGCCTGTGCCTGTTTATGGATCCTCTCTGCCTTTGTAC
1921 TTGAAGAGCGCATTTTACATTTCCAGTCCTTTCACAGACAGGAGCTCCAACCTTACGATGGAGAATTAAACTTGCTTGTA
2001 TTTCCACTTTGTGGATGAGGAACTATGAGAGGTGGAGTGACTTCCTGGGTCCCCGCTGAGACTTAGTGACAGATCCCAGA
2081 CAAGAACTTCATCTCTGACTCCAGGTCTAGTCCTCTTCCCCCTGTCTCTTGCCAACTCCAGCCCTGACACCGTGGGCGTC
2161 TCCCCTGAGAGCAGATATATTTCAATTGTCCAGGCCAAAAGAGGGGCGAGGCGGCATAAACACCCAAATTAGGTGGAGGA
2241 TCCAAAAGTCATTTTCATTTGGCTGTGGAATATGTTTTTTGTATTTCAATCAGCTAGGGGTGTGTTCACTGTTTTTGGAA
2321 ATTCACAGCGCTTGAGCCTCCATAATGAAGCTGGGCTGCAGAGCACCTGGCACGTGCTCCAGGCTCCCAGCTCCCAACCT
2401 AGGACCTCTCCCTGCCCTCCACTCTGGTTGGTTTGTGGTTCCCTCGACCGAGGGTTTCTAGAATCAGGGACCTTGTCTAA
2481 GTTTTGTTTGCCCAGAGCCCAGCGAAGTGTGTGATACACCTTGGGAGTTTAGGAGATCACAAAAGGGATGAAAACACCTT
2561 TAGAAAACATTTCATTGGTGGGGCGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGAAGGCTGAGGCAGGTGGATCAC
2641 CTGAAGGCAGGAGTTCAGACCAGCCTGACCAATATGGTGAAACCCCATCTATACTAAAAATACAAAAATTAGCCGGGTGT
2721 GGGGGCGTGTGCCTGTTTTTGTGAGACTCTGTCTCAAAAAAAAGAAAAAAATATTGTTAATAAGTGAGTGTTTTCGGCTC
2801 AAGGGAATTGAGTCATACGTTGCATCTCCCCCAGTTCTGCATCTTATTTGCTGCGCTTGCTGGAGTTGTAAAGATTGGTC
2881 CTAACAGGGAAAGAAGCACACAAGAGACTGTGAAAAGGGCTCTGAGACAAGCAAGGACAAAAGAGGGAGGGAAATACCTT
2961 CCACAGGGCCTGGGATCTGGCAATGCTAGAGCCTTTTTTTTTTTTTTTTTTTTTTGCGATGGAGTCTTGCTCTGTTGCTC
3041 AGGCTGGAGTGCAATGGCGTGATCTCAGCTCACTGCAACCTCCCCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTC
3121 CTGAGTAGCTGGGATCACAGGCGTACACCACCACACCCAGCTAAGTTTTTGTACTTTTAGTAGAGACGGGGTTTCACCAT
3201 GTTGGCCAGGCTGGTCACGGACTCCTGACCTCAGATGATCTGCCCGCCTGAGCCTCCGAAAGTGCTGGGATTACAGGCGT
3281 GAGCCACTGCGCCCGGCATGGAGCTGCTATTGATGGGTGAGCTCCACAGCTTTTGCAGAAGCAGAGGATATGACTTGAGA
3361 GCAGTGCTGTCACCTCTCAGCATGTCCCCAAGCCCAACTGGGGCCTCCTGGAGATGCCTCAGTCGGCACTGGCCCCAAGG
3441 GAATCGTGGGGAACAGTTGCACAATTTGCAAGTTTCTGAGTGCAGCTTTTCCCATCCTTGGGATCAGCAGATAAGTTGTA
3521 AACACAGGGAGGTACTGCTTATTGGATATACTTTTCATAAGTAGGACAGAATTCTTTTGGGACTCTAGAGTTGGGAACTA
3601 CCACTTACTAGCGGCGTGGCTGAGGCAGTCTTCCTCCTCTGTGGCTCAGGCCCTTCATCTGTGAAATGGGGTCACAGCAT
3681 CTGCCTCTCAGGGTCACTGTGAGGTGTCGATGTGAGCAAGGCCTGAGGCTTGGCAAGAAGTCAATGTCTGCAACTCAGCA
3761 GGGAGCAATGGCAGGGGCAGTCAGGGGTCGGCTCGGATAGGGGTGGGTGGGCTCCTGAGGTTGGAAGGGTAGGAATTACA
3841 GAGCTCTTGTTACTATTGTTGTTACTGTTTTTAAAGATACGATATTTCAGATAATTCAGGAGCACGTAAGGATGAAACTT
3921 AGGATAACCTAAAATCACACAACCTAGAGAGAAGCGCATTTTTGTCTTCCCCCATTTTCTAGGCAAAAATGAAAGTACTT
4001 TGTCCTCTTGAAAAACAATTCTCTAATGAATATCCTATGTTACATAGAGGCCTGTGTAATGCATTTGTGTGGCCACATGG
4081 TGTCAATTTCATGAATATACAATAATATTATTAATTCCCTGCTGAGGACATTAACTGGTTTCCAAGGCTGCTTGTTGTTT
4161 TTGCTACTACAAATAATGCATTGATGATAAATACTTTTACATACATGGTTGTATGTTTATCTGAACTATTTTCACCAATA
4241 TATTCACCTAGTGTGTATGGAAGTGTCCATTTTTGTCATACCCCTGGTAACCCTGTGATATTATTTTTAAACATTTTGCT
4321 AATGGATCTCTGTTCTTGTTTGAATGTATTTAATTTCCAGCAGAATGAGCCCCATTCCTTATTTTGATTGGCCATTTATC
4401 ATGTACATATGGTGAAATGCCTATTCGTGACTTAGCCAATGTTGTTTCTTTTTCTTACTGATTACTACAGTACATTTTTA
4481 TATGAAAGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gugaggguAGACUGGUCGg 5'
                  || ||||||| 
Target 5' gcaggagtTCAGACCAGCc 3'
 2647 - 2665 147.00 -15.00
2 
miRNA  3' guGAGGGUAG--A--CUGGUCGg 5'
            :|||||||  |  ||:|||| 
Target 5' ttTTCCCATCCTTGGGATCAGCa 3'
 3487 - 3509 145.00 -20.70
3 
miRNA  3' guGAG--GGUAGACUGGUCgg 5'
            :||  ||||| |:||||  
Target 5' gcTTCAGCCATCGGGCCAGgc 3'
 69 - 89 127.00 -18.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30518589 51 COSMIC
COSN30135221 76 COSMIC
COSN26599061 196 COSMIC
COSN16580852 658 COSMIC
COSN31490160 1265 COSMIC
COSN31516048 1290 COSMIC
COSN26601360 1291 COSMIC
COSN31602884 1322 COSMIC
COSN28756598 1353 COSMIC
COSN17700110 2764 COSMIC
COSN17892467 2821 COSMIC
COSN14996301 2873 COSMIC
COSN8696831 4047 COSMIC
COSN8696830 4187 COSMIC
COSN15606852 4317 COSMIC
COSN22402730 4460 COSMIC
COSN21957208 5051 COSMIC
COSN25548527 5118 COSMIC
COSN26411503 5276 COSMIC
COSN19373158 5280 COSMIC
COSN30549721 5481 COSMIC
COSN30609979 5493 COSMIC
COSN30731792 5563 COSMIC
COSN30607256 5617 COSMIC
COSN30548982 5816 COSMIC
COSN30647247 5830 COSMIC
COSN26454810 5888 COSMIC
COSN30641635 6550 COSMIC
COSN30651812 6591 COSMIC
COSN7312129 6594 COSMIC
COSN19461441 6597 COSMIC
COSN1558881 6681 COSMIC
COSN30575204 6779 COSMIC
COSN139776 6784 COSMIC
COSN17015130 6785 COSMIC
COSN7312128 6789 COSMIC
COSN30561497 7004 COSMIC
COSN15780668 7134 COSMIC
COSN1142891 7272 COSMIC
COSN30645793 7342 COSMIC
COSN30631351 7543 COSMIC
rs56169403 143 GWAS
rs2279695 1353 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs143322155 1 dbSNP
rs1245249795 2 dbSNP
rs755438323 7 dbSNP
rs1319640507 8 dbSNP
rs752065284 10 dbSNP
rs1210207436 11 dbSNP
rs35185105 11 dbSNP
rs780597452 13 dbSNP
rs1222517770 16 dbSNP
rs758686738 17 dbSNP
rs750842035 19 dbSNP
rs371841873 21 dbSNP
rs1372715005 22 dbSNP
rs1272788854 26 dbSNP
rs1435319124 27 dbSNP
rs755816626 31 dbSNP
rs1320076696 32 dbSNP
rs891362057 33 dbSNP
rs1417746395 36 dbSNP
rs752217115 37 dbSNP
rs146457169 38 dbSNP
rs939883851 40 dbSNP
rs908436892 41 dbSNP
rs759493107 42 dbSNP
rs1475876733 44 dbSNP
rs1424782947 47 dbSNP
rs750971832 48 dbSNP
rs376812526 53 dbSNP
rs1405986421 54 dbSNP
rs915905839 59 dbSNP
rs991544530 62 dbSNP
rs1325472915 64 dbSNP
rs1363577031 65 dbSNP
rs960360185 78 dbSNP
rs199594769 81 dbSNP
rs928743561 81 dbSNP
rs1428259679 84 dbSNP
rs1269181454 88 dbSNP
rs1252119510 94 dbSNP
rs982455994 101 dbSNP
rs1196185319 105 dbSNP
rs960382607 109 dbSNP
rs927630539 113 dbSNP
rs1222388636 117 dbSNP
rs1273693419 123 dbSNP
rs1191343408 124 dbSNP
rs183777921 125 dbSNP
rs980653625 132 dbSNP
rs1234926589 134 dbSNP
rs969300270 136 dbSNP
rs567166891 142 dbSNP
rs56169403 143 dbSNP
rs538290802 151 dbSNP
rs765662220 152 dbSNP
rs575657936 162 dbSNP
rs1340630653 163 dbSNP
rs1449771291 171 dbSNP
rs562646017 173 dbSNP
rs998913924 174 dbSNP
rs891098482 181 dbSNP
rs1287321921 190 dbSNP
rs111407586 195 dbSNP
rs1027909336 200 dbSNP
rs1444620488 207 dbSNP
rs1353316004 208 dbSNP
rs936900948 216 dbSNP
rs1400255115 218 dbSNP
rs1203700721 227 dbSNP
rs1327107433 228 dbSNP
rs1283833934 229 dbSNP
rs555307043 232 dbSNP
rs996535847 233 dbSNP
rs1444037497 235 dbSNP
rs535477663 238 dbSNP
rs1179199944 244 dbSNP
rs192145130 247 dbSNP
rs145193139 248 dbSNP
rs997016827 253 dbSNP
rs1365150892 254 dbSNP
rs1470782217 255 dbSNP
rs900122150 255 dbSNP
rs1404762670 260 dbSNP
rs1446817702 262 dbSNP
rs539782146 263 dbSNP
rs1310649358 267 dbSNP
rs1004393795 278 dbSNP
rs1237502880 283 dbSNP
rs886928473 288 dbSNP
rs1279386789 292 dbSNP
rs1456891401 302 dbSNP
rs1253556348 310 dbSNP
rs1048292026 315 dbSNP
rs1215412160 323 dbSNP
rs941553973 324 dbSNP
rs148829501 330 dbSNP
rs550899905 331 dbSNP
rs1378035150 338 dbSNP
rs1056165423 339 dbSNP
rs1224110779 340 dbSNP
rs34119282 350 dbSNP
rs1351728821 358 dbSNP
rs574771241 359 dbSNP
rs980434443 369 dbSNP
rs530589586 372 dbSNP
rs938707967 388 dbSNP
rs1229785005 400 dbSNP
rs1376180820 410 dbSNP
rs1304818907 416 dbSNP
rs969287218 422 dbSNP
rs928686391 428 dbSNP
rs977513965 432 dbSNP
rs1328723036 435 dbSNP
rs35599864 441 dbSNP
rs532335541 449 dbSNP
rs914732905 456 dbSNP
rs1225666336 467 dbSNP
rs990283104 473 dbSNP
rs956724026 475 dbSNP
rs1219466716 483 dbSNP
rs1030847415 489 dbSNP
rs998862987 489 dbSNP
rs953599000 495 dbSNP
rs111712015 498 dbSNP
rs1156393310 499 dbSNP
rs1490783606 522 dbSNP
rs1196936407 526 dbSNP
rs1029215045 528 dbSNP
rs975462880 532 dbSNP
rs188049494 536 dbSNP
rs1172046458 537 dbSNP
rs1194947243 538 dbSNP
rs1461000103 542 dbSNP
rs35687637 547 dbSNP
rs1019727887 556 dbSNP
rs1477029888 567 dbSNP
rs547073628 569 dbSNP
rs1366657590 574 dbSNP
rs886897176 575 dbSNP
rs1407288455 585 dbSNP
rs1301743163 590 dbSNP
rs183399958 595 dbSNP
rs1383032436 598 dbSNP
rs1039049677 602 dbSNP
rs1005817452 607 dbSNP
rs1246028345 613 dbSNP
rs1265966260 617 dbSNP
rs548181478 621 dbSNP
rs528072367 622 dbSNP
rs749193679 627 dbSNP
rs1288444703 629 dbSNP
rs1488470632 636 dbSNP
rs939042054 640 dbSNP
rs541512526 645 dbSNP
rs559425892 646 dbSNP
rs1162191923 649 dbSNP
rs1281189193 656 dbSNP
rs1220985491 658 dbSNP
rs1044741493 664 dbSNP
rs1454591067 666 dbSNP
rs777613473 672 dbSNP
rs907187220 674 dbSNP
rs1431944568 677 dbSNP
rs1381860417 678 dbSNP
rs914933453 692 dbSNP
rs989774821 696 dbSNP
rs935270352 698 dbSNP
rs1042142667 705 dbSNP
rs1317309709 718 dbSNP
rs1217592352 719 dbSNP
rs1342690967 726 dbSNP
rs1258731992 728 dbSNP
rs1296730575 742 dbSNP
rs35060989 744 dbSNP
rs923731753 744 dbSNP
rs1182059532 754 dbSNP
rs1244490972 755 dbSNP
rs760593487 760 dbSNP
rs987305707 763 dbSNP
rs1385099045 767 dbSNP
rs955448488 768 dbSNP
rs546075464 770 dbSNP
rs1343793073 773 dbSNP
rs577065978 775 dbSNP
rs369097128 779 dbSNP
rs563455726 781 dbSNP
rs769566930 782 dbSNP
rs1412229832 783 dbSNP
rs1408416663 784 dbSNP
rs1450466672 788 dbSNP
rs145598804 801 dbSNP
rs1424406035 806 dbSNP
rs922118474 808 dbSNP
rs1225379177 812 dbSNP
rs1304658829 813 dbSNP
rs1287150192 816 dbSNP
rs1203942222 824 dbSNP
rs1264568604 832 dbSNP
rs1459605362 835 dbSNP
rs887368488 843 dbSNP
rs976349958 844 dbSNP
rs966729576 859 dbSNP
rs1488108817 860 dbSNP
rs1281254993 879 dbSNP
rs1179443312 891 dbSNP
rs1212363980 894 dbSNP
rs1019274396 896 dbSNP
rs1310456689 902 dbSNP
rs1177437894 916 dbSNP
rs1278537472 918 dbSNP
rs1431636493 921 dbSNP
rs575303932 923 dbSNP
rs1336223475 926 dbSNP
rs1215734954 927 dbSNP
rs1444339558 928 dbSNP
rs906265671 936 dbSNP
rs772850935 939 dbSNP
rs982447384 940 dbSNP
rs951076409 948 dbSNP
rs190839438 953 dbSNP
rs1276751405 954 dbSNP
rs1321056654 955 dbSNP
rs772480625 959 dbSNP
rs747843401 962 dbSNP
rs1273159182 963 dbSNP
rs1439014189 967 dbSNP
rs535585565 969 dbSNP
rs893428389 970 dbSNP
rs1482934178 972 dbSNP
rs1200680136 980 dbSNP
rs780905714 982 dbSNP
rs1445194715 995 dbSNP
rs1479606680 996 dbSNP
rs1175933952 1029 dbSNP
rs1420359447 1035 dbSNP
rs1411684205 1039 dbSNP
rs1358004686 1043 dbSNP
rs894293619 1046 dbSNP
rs1353789336 1049 dbSNP
rs1034624330 1051 dbSNP
rs1405484042 1053 dbSNP
rs1304796055 1064 dbSNP
rs1467174466 1070 dbSNP
rs1002781942 1080 dbSNP
rs907151062 1082 dbSNP
rs186160037 1086 dbSNP
rs1270360531 1088 dbSNP
rs771823989 1094 dbSNP
rs1340875597 1100 dbSNP
rs987251237 1106 dbSNP
rs933178371 1107 dbSNP
rs1342146816 1110 dbSNP
rs946066180 1115 dbSNP
rs1223849897 1121 dbSNP
rs1258502073 1139 dbSNP
rs893200504 1143 dbSNP
rs532135359 1150 dbSNP
rs553000329 1153 dbSNP
rs1242859720 1162 dbSNP
rs1054452541 1164 dbSNP
rs1482394384 1165 dbSNP
rs1418882146 1166 dbSNP
rs149741241 1167 dbSNP
rs1425278780 1168 dbSNP
rs975437316 1178 dbSNP
rs1237032033 1180 dbSNP
rs1423694727 1182 dbSNP
rs1318568543 1186 dbSNP
rs754550951 1187 dbSNP
rs922116977 1188 dbSNP
rs1040983611 1192 dbSNP
rs964166534 1199 dbSNP
rs1382846665 1207 dbSNP
rs1247384314 1210 dbSNP
rs751098194 1213 dbSNP
rs1256675528 1220 dbSNP
rs1209548807 1225 dbSNP
rs1285389677 1231 dbSNP
rs779685805 1239 dbSNP
rs1017307287 1240 dbSNP
rs982414941 1241 dbSNP
rs1445275226 1248 dbSNP
rs1185357610 1249 dbSNP
rs1383228692 1258 dbSNP
rs951045564 1263 dbSNP
rs1377974400 1264 dbSNP
rs919614884 1270 dbSNP
rs571069226 1274 dbSNP
rs1158984468 1277 dbSNP
rs951705585 1279 dbSNP
rs557497361 1284 dbSNP
rs1025927683 1290 dbSNP
rs1406198086 1298 dbSNP
rs1454064537 1303 dbSNP
rs1317784406 1308 dbSNP
rs1381309107 1312 dbSNP
rs1034182132 1313 dbSNP
rs1280560854 1319 dbSNP
rs550360218 1322 dbSNP
rs1222316476 1323 dbSNP
rs1267693250 1330 dbSNP
rs1023817097 1340 dbSNP
rs17500801 1342 dbSNP
rs548291679 1343 dbSNP
rs1010134757 1344 dbSNP
rs147613401 1345 dbSNP
rs1365354086 1347 dbSNP
rs369019429 1350 dbSNP
rs1054420941 1352 dbSNP
rs2279695 1353 dbSNP
rs1429474938 1359 dbSNP
rs900587122 1360 dbSNP
rs1470750055 1368 dbSNP
rs73401303 1372 dbSNP
rs944882272 1377 dbSNP
rs1236904999 1390 dbSNP
rs1198498134 1394 dbSNP
rs992562466 1395 dbSNP
rs116482702 1396 dbSNP
rs76416867 1397 dbSNP
rs1237248163 1398 dbSNP
rs930909050 1420 dbSNP
rs1288106744 1423 dbSNP
rs543727219 1427 dbSNP
rs1225554386 1442 dbSNP
rs1307202581 1449 dbSNP
rs1038867330 1456 dbSNP
rs1241700588 1463 dbSNP
rs1373927241 1464 dbSNP
rs754082993 1466 dbSNP
rs1441617155 1468 dbSNP
rs529822412 1476 dbSNP
rs910000065 1478 dbSNP
rs1196329904 1493 dbSNP
rs1457185550 1499 dbSNP
rs866503071 1505 dbSNP
rs560787099 1507 dbSNP
rs958440565 1511 dbSNP
rs1181270478 1512 dbSNP
rs927049774 1517 dbSNP
rs1481241928 1524 dbSNP
rs982326866 1532 dbSNP
rs1376610040 1537 dbSNP
rs541914487 1545 dbSNP
rs1378619267 1546 dbSNP
rs1178086110 1551 dbSNP
rs1399338604 1553 dbSNP
rs1408520336 1555 dbSNP
rs981277958 1558 dbSNP
rs1307856740 1559 dbSNP
rs970973450 1560 dbSNP
rs1407027150 1570 dbSNP
rs1434303869 1572 dbSNP
rs971621527 1578 dbSNP
rs573007283 1589 dbSNP
rs1330609871 1606 dbSNP
rs1228158426 1633 dbSNP
rs553294326 1640 dbSNP
rs1189862509 1647 dbSNP
rs1337437103 1654 dbSNP
rs1023808783 1664 dbSNP
rs1020104858 1665 dbSNP
rs1196867769 1673 dbSNP
rs1010102061 1676 dbSNP
rs957324917 1689 dbSNP
rs1032935650 1693 dbSNP
rs996588989 1695 dbSNP
rs999698754 1696 dbSNP
rs1168464090 1698 dbSNP
rs1366607833 1709 dbSNP
rs191569070 1710 dbSNP
rs1040877010 1711 dbSNP
rs760786873 1716 dbSNP
rs1332789451 1721 dbSNP
rs997349262 1722 dbSNP
rs1299046135 1723 dbSNP
rs775588127 1724 dbSNP
rs1386024508 1725 dbSNP
rs1227618143 1727 dbSNP
rs1362320347 1728 dbSNP
rs767580551 1744 dbSNP
rs1361349107 1748 dbSNP
rs370692869 1757 dbSNP
rs1219897282 1765 dbSNP
rs1161656816 1775 dbSNP
rs1039270044 1780 dbSNP
rs1486017223 1783 dbSNP
rs1206490771 1788 dbSNP
rs941899442 1790 dbSNP
rs909058263 1791 dbSNP
rs1188501885 1795 dbSNP
rs1386329312 1798 dbSNP
rs1358836949 1799 dbSNP
rs545896438 1806 dbSNP
rs886592393 1809 dbSNP
rs576629073 1810 dbSNP
rs1379893184 1812 dbSNP
rs1454539924 1814 dbSNP
rs1290817176 1828 dbSNP
rs1386578166 1842 dbSNP
rs1434394836 1851 dbSNP
rs1197290042 1859 dbSNP
rs368352995 1860 dbSNP
rs531236478 1867 dbSNP
rs1226511242 1873 dbSNP
rs918554426 1880 dbSNP
rs1047957713 1885 dbSNP
rs1317246860 1911 dbSNP
rs1240770226 1921 dbSNP
rs1411404813 1924 dbSNP
rs186275462 1926 dbSNP
rs557350155 1929 dbSNP
rs1487125484 1930 dbSNP
rs899416230 1931 dbSNP
rs1038006394 1944 dbSNP
rs1203825738 1946 dbSNP
rs1463089274 1960 dbSNP
rs916869536 1967 dbSNP
rs937023702 1970 dbSNP
rs1413565005 1977 dbSNP
rs991376060 1996 dbSNP
rs1161576675 2025 dbSNP
rs958206887 2036 dbSNP
rs1200560400 2051 dbSNP
rs145265202 2054 dbSNP
rs1408347953 2055 dbSNP
rs1445770077 2063 dbSNP
rs1302140771 2080 dbSNP
rs1373801923 2093 dbSNP
rs1392848737 2104 dbSNP
rs999247511 2112 dbSNP
rs1328121781 2116 dbSNP
rs966435213 2121 dbSNP
rs1029950738 2123 dbSNP
rs33961643 2124 dbSNP
rs752566364 2124 dbSNP
rs796230811 2124 dbSNP
rs981587089 2128 dbSNP
rs949865374 2133 dbSNP
rs568660779 2135 dbSNP
rs555249075 2148 dbSNP
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rs1285015727 5494 dbSNP
rs771873521 5495 dbSNP
rs954052848 5496 dbSNP
rs867044795 5498 dbSNP
rs561503460 5499 dbSNP
rs142261230 5500 dbSNP
rs1468165504 5506 dbSNP
rs1405158143 5508 dbSNP
rs1181901948 5511 dbSNP
rs1234008242 5515 dbSNP
rs1171099953 5519 dbSNP
rs1177187618 5523 dbSNP
rs1466375214 5527 dbSNP
rs1421870909 5528 dbSNP
rs1380035875 5534 dbSNP
rs1435579806 5536 dbSNP
rs770335544 5537 dbSNP
rs1015730215 5547 dbSNP
rs912325094 5548 dbSNP
rs1400314132 5560 dbSNP
rs3803088 5565 dbSNP
rs1329583447 5566 dbSNP
rs1337518584 5574 dbSNP
rs1439869832 5575 dbSNP
rs953816133 5576 dbSNP
rs1371375201 5582 dbSNP
rs1236205613 5584 dbSNP
rs920947593 5585 dbSNP
rs1343814119 5586 dbSNP
rs1195927912 5596 dbSNP
rs1238117999 5603 dbSNP
rs973949192 5607 dbSNP
rs1186025069 5608 dbSNP
rs78646087 5611 dbSNP
rs1023201366 5619 dbSNP
rs1013617349 5626 dbSNP
rs1262954464 5627 dbSNP
rs894806287 5632 dbSNP
rs1308916688 5633 dbSNP
rs1168590642 5634 dbSNP
rs1398677031 5637 dbSNP
rs1056097038 5641 dbSNP
rs1330661686 5646 dbSNP
rs1395123678 5657 dbSNP
rs539986115 5664 dbSNP
rs577555912 5670 dbSNP
rs1330177380 5680 dbSNP
rs1213482897 5683 dbSNP
rs1227656213 5685 dbSNP
rs778150134 5687 dbSNP
rs1379349496 5692 dbSNP
rs1316521985 5700 dbSNP
rs1450424032 5704 dbSNP
rs1336817493 5707 dbSNP
rs902278807 5725 dbSNP
rs770249160 5732 dbSNP
rs1042584392 5733 dbSNP
rs1491526848 5735 dbSNP
rs946588504 5735 dbSNP
rs147643294 5736 dbSNP
rs534135023 5736 dbSNP
rs1451282173 5741 dbSNP
rs145184545 5744 dbSNP
rs1194084164 5746 dbSNP
rs1374875354 5753 dbSNP
rs544445817 5759 dbSNP
rs1049649985 5767 dbSNP
rs905823124 5782 dbSNP
rs932593086 5783 dbSNP
rs1291606957 5784 dbSNP
rs367740042 5789 dbSNP
rs1389666292 5793 dbSNP
rs1382453655 5795 dbSNP
rs1319942020 5798 dbSNP
rs1044404866 5812 dbSNP
rs1217520970 5822 dbSNP
rs922592960 5823 dbSNP
rs1336138474 5824 dbSNP
rs893423111 5824 dbSNP
rs976749914 5829 dbSNP
rs373891048 5830 dbSNP
rs1264175598 5831 dbSNP
rs1487418187 5832 dbSNP
rs908647307 5836 dbSNP
rs575618321 5847 dbSNP
rs912744056 5849 dbSNP
rs1258271631 5859 dbSNP
rs1476151731 5860 dbSNP
rs1162531857 5864 dbSNP
rs1367809077 5875 dbSNP
rs1454177559 5880 dbSNP
rs1168681405 5881 dbSNP
rs1358282723 5886 dbSNP
rs1051254206 5888 dbSNP
rs879866346 5897 dbSNP
rs1356740821 5898 dbSNP
rs781518750 5899 dbSNP
rs952899954 5900 dbSNP
rs1340364167 5905 dbSNP
rs1240273862 5913 dbSNP
rs920927539 5925 dbSNP
rs1023588843 5936 dbSNP
rs1165511061 5937 dbSNP
rs991753221 5943 dbSNP
rs1351828948 5945 dbSNP
rs973770878 5947 dbSNP
rs941247663 5956 dbSNP
rs370759701 5959 dbSNP
rs908481052 5969 dbSNP
rs1180184541 5970 dbSNP
rs1179667772 5974 dbSNP
rs1183746862 5978 dbSNP
rs1481785531 5982 dbSNP
rs193267186 5998 dbSNP
rs1418719053 6001 dbSNP
rs746521362 6005 dbSNP
rs1376880697 6010 dbSNP
rs1321927292 6011 dbSNP
rs1293371313 6013 dbSNP
rs1243090569 6016 dbSNP
rs1034615215 6017 dbSNP
rs1301730469 6019 dbSNP
rs1003174011 6020 dbSNP
rs150133659 6023 dbSNP
rs1311929425 6029 dbSNP
rs1375076741 6029 dbSNP
rs1392440755 6029 dbSNP
rs981893915 6029 dbSNP
rs1370976592 6033 dbSNP
rs1304534459 6036 dbSNP
rs970205704 6044 dbSNP
rs902246274 6045 dbSNP
rs1022912491 6052 dbSNP
rs1480934956 6055 dbSNP
rs1197414423 6062 dbSNP
rs1236149511 6076 dbSNP
rs1438915998 6079 dbSNP
rs1194023482 6081 dbSNP
rs188703998 6083 dbSNP
rs182968922 6084 dbSNP
rs1431047232 6086 dbSNP
rs1366382484 6091 dbSNP
rs1011098810 6092 dbSNP
rs1354551547 6099 dbSNP
rs893633070 6105 dbSNP
rs1050063071 6126 dbSNP
rs932516026 6127 dbSNP
rs1422758375 6131 dbSNP
rs190776362 6134 dbSNP
rs1160558163 6135 dbSNP
rs1421385435 6138 dbSNP
rs999125374 6146 dbSNP
rs1406304899 6149 dbSNP
rs1041044572 6152 dbSNP
rs939986562 6155 dbSNP
rs755229690 6157 dbSNP
rs534076268 6161 dbSNP
rs1220527729 6163 dbSNP
rs1219638840 6171 dbSNP
rs1490025629 6177 dbSNP
rs1286088626 6184 dbSNP
rs571613576 6188 dbSNP
rs984213966 6189 dbSNP
rs1457246591 6192 dbSNP
rs1315021406 6197 dbSNP
rs1214121681 6203 dbSNP
rs1248202197 6207 dbSNP
rs931430559 6213 dbSNP
rs186737226 6214 dbSNP
rs1038026148 6216 dbSNP
rs992076877 6226 dbSNP
rs751772502 6229 dbSNP
rs1346400894 6232 dbSNP
rs761464000 6234 dbSNP
rs780235217 6235 dbSNP
rs560488510 6236 dbSNP
rs538109724 6242 dbSNP
rs1465514473 6257 dbSNP
rs1327027477 6276 dbSNP
rs1434596655 6276 dbSNP
rs182569986 6276 dbSNP
rs1035919857 6280 dbSNP
rs977665134 6288 dbSNP
rs966334116 6289 dbSNP
rs1021074199 6296 dbSNP
rs980662691 6297 dbSNP
rs1291780983 6298 dbSNP
rs1010652268 6303 dbSNP
rs1319768955 6306 dbSNP
rs1289502872 6308 dbSNP
rs970533673 6316 dbSNP
rs893549191 6320 dbSNP
rs545081076 6321 dbSNP
rs1489052343 6326 dbSNP
rs1190900614 6329 dbSNP
rs1261782599 6331 dbSNP
rs1023028572 6332 dbSNP
rs1480937196 6334 dbSNP
rs990207676 6336 dbSNP
rs1196907639 6337 dbSNP
rs1166209431 6338 dbSNP
rs1404018825 6339 dbSNP
rs1479891406 6343 dbSNP
rs957334478 6344 dbSNP
rs996702331 6348 dbSNP
rs999512083 6350 dbSNP
rs1206341952 6357 dbSNP
rs901030826 6358 dbSNP
rs1284630392 6361 dbSNP
rs1355442513 6363 dbSNP
rs891413185 6368 dbSNP
rs1040970763 6369 dbSNP
rs529430490 6372 dbSNP
rs1004166980 6376 dbSNP
rs1042643534 6382 dbSNP
rs537978490 6383 dbSNP
rs1281127074 6384 dbSNP
rs1181672080 6394 dbSNP
rs1048880262 6395 dbSNP
rs112402442 6402 dbSNP
rs1345086955 6403 dbSNP
rs546671725 6406 dbSNP
rs1360129849 6407 dbSNP
rs1055864235 6412 dbSNP
rs1435464071 6413 dbSNP
rs1336226516 6414 dbSNP
rs1357377359 6415 dbSNP
rs938832862 6425 dbSNP
rs928833826 6429 dbSNP
rs532886248 6432 dbSNP
rs886734037 6438 dbSNP
rs1378758199 6439 dbSNP
rs977632492 6441 dbSNP
rs968073579 6446 dbSNP
rs913529189 6457 dbSNP
rs564067062 6458 dbSNP
rs1201723673 6468 dbSNP
rs1046765404 6475 dbSNP
rs11068161 6477 dbSNP
rs1028473110 6480 dbSNP
rs996628651 6481 dbSNP
rs1442008821 6485 dbSNP
rs965200629 6491 dbSNP
rs1177128166 6492 dbSNP
rs1470589055 6494 dbSNP
rs1478453341 6495 dbSNP
rs1019497746 6501 dbSNP
rs575579641 6502 dbSNP
rs1004096515 6503 dbSNP
rs1045282959 6509 dbSNP
rs1468995039 6510 dbSNP
rs947884262 6530 dbSNP
rs552221635 6533 dbSNP
rs1048362923 6536 dbSNP
rs1371305772 6537 dbSNP
rs1373236479 6538 dbSNP
rs995932656 6539 dbSNP
rs757666561 6540 dbSNP
rs1194709378 6544 dbSNP
rs1426152756 6546 dbSNP
rs561943955 6547 dbSNP
rs894498936 6548 dbSNP
rs542181109 6549 dbSNP
rs938799578 6550 dbSNP
rs1459467691 6551 dbSNP
rs11068160 6554 dbSNP
rs1041870426 6556 dbSNP
rs957492617 6559 dbSNP
rs1261067874 6567 dbSNP
rs946284626 6571 dbSNP
rs760640324 6573 dbSNP
rs1202756060 6574 dbSNP
rs1477777926 6577 dbSNP
rs914820533 6582 dbSNP
rs1425750528 6584 dbSNP
rs977479491 6586 dbSNP
rs955796787 6588 dbSNP
rs1229714966 6590 dbSNP
rs552941706 6591 dbSNP
rs1330119607 6596 dbSNP
rs1430893213 6597 dbSNP
rs1320666645 6600 dbSNP
rs201164990 6600 dbSNP
rs372934992 6600 dbSNP
rs997518249 6600 dbSNP
rs964171664 6608 dbSNP
rs1454017672 6611 dbSNP
rs752588945 6614 dbSNP
rs1017115449 6623 dbSNP
rs1005302005 6626 dbSNP
rs886890612 6633 dbSNP
rs534252949 6634 dbSNP
rs990440776 6635 dbSNP
rs1265377781 6639 dbSNP
rs1335165299 6643 dbSNP
rs1476808063 6648 dbSNP
rs1192929784 6664 dbSNP
rs957929645 6685 dbSNP
rs569344650 6692 dbSNP
rs1161222711 6712 dbSNP
rs906210165 6718 dbSNP
rs1169353360 6719 dbSNP
rs558100206 6721 dbSNP
rs965130292 6722 dbSNP
rs1372049264 6726 dbSNP
rs947976206 6727 dbSNP
rs1163633552 6735 dbSNP
rs1295577106 6741 dbSNP
rs1341560816 6747 dbSNP
rs915074841 6758 dbSNP
rs147833611 6766 dbSNP
rs1004063971 6772 dbSNP
rs79666885 6777 dbSNP
rs951307820 6778 dbSNP
rs1182771465 6779 dbSNP
rs1487388639 6779 dbSNP
rs1215948869 6781 dbSNP
rs61088378 6781 dbSNP
rs57472288 6782 dbSNP
rs865944221 6782 dbSNP
rs1364862965 6783 dbSNP
rs1398263460 6783 dbSNP
rs1491296837 6783 dbSNP
rs36071252 6785 dbSNP
rs57185565 6785 dbSNP
rs7310229 6785 dbSNP
rs936076211 6785 dbSNP
rs754083222 6786 dbSNP
rs1197842276 6787 dbSNP
rs1191356583 6789 dbSNP
rs866955370 6789 dbSNP
rs1269015297 6790 dbSNP
rs139551086 6792 dbSNP
rs1174721534 6796 dbSNP
rs1430992783 6796 dbSNP
rs199913887 6798 dbSNP
rs1466565779 6802 dbSNP
rs1173283857 6804 dbSNP
rs1441921790 6804 dbSNP
rs71442995 6804 dbSNP
rs977930197 6804 dbSNP
rs1002873508 6807 dbSNP
rs907304438 6811 dbSNP
rs1487272055 6814 dbSNP
rs1198100729 6824 dbSNP
rs955370559 6833 dbSNP
rs1478440533 6834 dbSNP
rs1196537911 6844 dbSNP
rs922600087 6853 dbSNP
rs1246738579 6854 dbSNP
rs568943505 6864 dbSNP
rs549255003 6869 dbSNP
rs946223757 6871 dbSNP
rs1456548918 6872 dbSNP
rs542165945 6876 dbSNP
rs893334239 6876 dbSNP
rs1401909820 6892 dbSNP
rs1313470301 6893 dbSNP
rs56332737 6895 dbSNP
rs1005751524 6903 dbSNP
rs1314556727 6904 dbSNP
rs1336784751 6916 dbSNP
rs769228638 6923 dbSNP
rs932291155 6925 dbSNP
rs1025368677 6930 dbSNP
rs920892812 6934 dbSNP
rs746420212 6935 dbSNP
rs1475347133 6937 dbSNP
rs1182838971 6939 dbSNP
rs1003711924 6943 dbSNP
rs1422299781 6945 dbSNP
rs1303262900 6954 dbSNP
rs561172509 6964 dbSNP
rs1296364521 6968 dbSNP
rs1429401313 6970 dbSNP
rs1023762098 6971 dbSNP
rs546885708 6972 dbSNP
rs1285743473 6973 dbSNP
rs912334755 6974 dbSNP
rs533009575 6981 dbSNP
rs1162912986 6985 dbSNP
rs570473635 7003 dbSNP
rs1309589715 7005 dbSNP
rs1355382903 7008 dbSNP
rs982577323 7012 dbSNP
rs1012112008 7013 dbSNP
rs951275536 7022 dbSNP
rs1026852842 7023 dbSNP
rs1436325739 7029 dbSNP
rs1460313407 7033 dbSNP
rs1053534070 7034 dbSNP
rs770552727 7036 dbSNP
rs1156898008 7040 dbSNP
rs60402867 7047 dbSNP
rs530504896 7058 dbSNP
rs4767439 7066 dbSNP
rs1034278492 7069 dbSNP
rs772733001 7073 dbSNP
rs922624193 7076 dbSNP
rs770339031 7078 dbSNP
rs907271768 7081 dbSNP
rs181422935 7082 dbSNP
rs528379128 7093 dbSNP
rs73399301 7096 dbSNP
rs1237284407 7100 dbSNP
rs910159418 7102 dbSNP
rs1220448468 7104 dbSNP
rs1281409742 7107 dbSNP
rs1321970518 7108 dbSNP
rs1203465217 7110 dbSNP
rs1010354976 7113 dbSNP
rs144193213 7113 dbSNP
rs951497592 7125 dbSNP
rs1232512281 7130 dbSNP
rs747371759 7135 dbSNP
rs1054632824 7138 dbSNP
rs545696423 7149 dbSNP
rs970918897 7156 dbSNP
rs932193997 7163 dbSNP
rs900770956 7164 dbSNP
rs1389449559 7165 dbSNP
rs866719655 7172 dbSNP
rs1406375743 7173 dbSNP
rs943668308 7178 dbSNP
rs117431038 7180 dbSNP
rs912258695 7184 dbSNP
rs1438014988 7199 dbSNP
rs982929419 7202 dbSNP
rs1344176461 7209 dbSNP
rs1301952396 7223 dbSNP
rs578026052 7227 dbSNP
rs575817214 7254 dbSNP
rs1259248350 7256 dbSNP
rs1320525073 7257 dbSNP
rs1194400682 7263 dbSNP
rs1272619936 7284 dbSNP
rs150612783 7286 dbSNP
rs919714072 7293 dbSNP
rs190775925 7294 dbSNP
rs1480078916 7296 dbSNP
rs1156601656 7301 dbSNP
rs958587085 7302 dbSNP
rs1469388076 7312 dbSNP
rs1034247237 7313 dbSNP
rs1429721121 7323 dbSNP
rs1406672732 7327 dbSNP
rs187168701 7328 dbSNP
rs142807098 7334 dbSNP
rs1364471287 7347 dbSNP
rs1400073245 7366 dbSNP
rs1279427141 7367 dbSNP
rs1032193488 7376 dbSNP
rs971364045 7393 dbSNP
rs1269943086 7394 dbSNP
rs1357329462 7395 dbSNP
rs1211804512 7397 dbSNP
rs768998059 7400 dbSNP
rs747342895 7403 dbSNP
rs77130628 7416 dbSNP
rs1052070041 7419 dbSNP
rs758751134 7419 dbSNP
rs957485279 7420 dbSNP
rs901280413 7434 dbSNP
rs1039709569 7435 dbSNP
rs748318886 7452 dbSNP
rs181044103 7459 dbSNP
rs1384186234 7469 dbSNP
rs553502735 7473 dbSNP
rs1419826912 7475 dbSNP
rs909898084 7478 dbSNP
rs1387819045 7480 dbSNP
rs1380964412 7482 dbSNP
rs984333629 7488 dbSNP
rs745958685 7490 dbSNP
rs930260576 7491 dbSNP
rs57426509 7495 dbSNP
rs1313240112 7496 dbSNP
rs1358968791 7500 dbSNP
rs982715495 7517 dbSNP
rs1288167611 7528 dbSNP
rs970483836 7529 dbSNP
rs900697209 7530 dbSNP
rs1040638214 7535 dbSNP
rs779114171 7542 dbSNP
rs1443965158 7543 dbSNP
rs756160537 7544 dbSNP
rs890791767 7550 dbSNP
rs1046727567 7551 dbSNP
rs139734622 7556 dbSNP
rs919699898 7558 dbSNP
rs1430742558 7572 dbSNP
rs952464715 7576 dbSNP
rs1361501375 7586 dbSNP
rs1452416720 7588 dbSNP
rs550689087 7590 dbSNP
rs1158566651 7593 dbSNP
rs530673155 7612 dbSNP
rs1456637086 7613 dbSNP
rs1335085491 7619 dbSNP
rs1038586690 7622 dbSNP
rs545805229 7623 dbSNP
rs1382314086 7632 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 79794.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000261318.3 | 3UTR | CUCCCCAGCACCUCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000261318.3 | 3UTR | UCCCCAGCACCUCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000261318.3 | 3UTR | CUCCCCAGCACCUCACCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000261318.3 | 3UTR | ACUCCCCAGCACCUCACCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000261318.3 | 3UTR | CUCCCCAGCACCUCACCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
212 hsa-miR-6131 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT077630 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 6
MIRT177175 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT442431 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 6
MIRT478684 CSRP2 cysteine and glycine rich protein 2 2 4
MIRT484891 ZNF607 zinc finger protein 607 2 2
MIRT487161 IFRD1 interferon related developmental regulator 1 2 10
MIRT488196 MAT1A methionine adenosyltransferase 1A 2 2
MIRT495470 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT497190 DUSP18 dual specificity phosphatase 18 2 2
MIRT498387 LRRC58 leucine rich repeat containing 58 2 2
MIRT499716 PAGR1 PAXIP1 associated glutamate rich protein 1 2 10
MIRT507261 FERMT2 fermitin family member 2 2 2
MIRT507290 FEM1B fem-1 homolog B 2 2
MIRT507537 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 6
MIRT508063 ARHGAP42 Rho GTPase activating protein 42 2 4
MIRT510064 C12orf49 chromosome 12 open reading frame 49 2 4
MIRT510825 SBNO1 strawberry notch homolog 1 2 4
MIRT511209 LNPEP leucyl and cystinyl aminopeptidase 2 4
MIRT511827 H2AFX H2A histone family member X 2 4
MIRT512063 DEK DEK proto-oncogene 2 6
MIRT513501 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT513634 TP53INP2 tumor protein p53 inducible nuclear protein 2 2 2
MIRT515274 NUCB1 nucleobindin 1 2 6
MIRT519380 FKBP14 FK506 binding protein 14 2 4
MIRT519521 ZNF8 zinc finger protein 8 2 2
MIRT520633 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT520952 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT522073 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT527844 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT530067 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT530226 ZMAT4 zinc finger matrin-type 4 2 2
MIRT530637 PPIC peptidylprolyl isomerase C 2 4
MIRT530677 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531681 MYO3A myosin IIIA 2 2
MIRT532175 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534235 SLC25A16 solute carrier family 25 member 16 2 4
MIRT535116 PLXNA2 plexin A2 2 2
MIRT535562 OMD osteomodulin 2 2
MIRT536483 KIAA1468 KIAA1468 2 2
MIRT538368 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT550667 TRAF1 TNF receptor associated factor 1 2 2
MIRT554736 RHOC ras homolog family member C 2 2
MIRT556522 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT559269 BAG4 BCL2 associated athanogene 4 2 2
MIRT560957 FAM35A family with sequence similarity 35 member A 2 2
MIRT564728 ZNF268 zinc finger protein 268 2 2
MIRT573116 NUBP1 nucleotide binding protein 1 2 2
MIRT573891 MKI67 marker of proliferation Ki-67 2 2
MIRT576641 Mill2 MHC I like leukocyte 2 1 1
MIRT615883 FBXO17 F-box protein 17 2 2
MIRT618203 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT620108 HARBI1 harbinger transposase derived 1 2 2
MIRT621185 FAM153B family with sequence similarity 153 member B 2 2
MIRT621573 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT623753 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT624057 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT625013 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT626071 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT627872 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT629302 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629862 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630442 IDE insulin degrading enzyme 2 2
MIRT630997 ZNF573 zinc finger protein 573 2 2
MIRT631091 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631280 SGSM1 small G protein signaling modulator 1 2 2
MIRT631528 MYO6 myosin VI 2 2
MIRT631641 WDR91 WD repeat domain 91 2 4
MIRT631822 TMEM154 transmembrane protein 154 2 2
MIRT632776 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633277 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633655 SLC28A1 solute carrier family 28 member 1 2 2
MIRT634070 PLIN3 perilipin 3 2 2
MIRT634155 YME1L1 YME1 like 1 ATPase 2 2
MIRT634224 TMEM132B transmembrane protein 132B 2 2
MIRT636400 MYO5A myosin VA 2 2
MIRT638677 GCLM glutamate-cysteine ligase modifier subunit 2 2
MIRT638736 FAXC failed axon connections homolog 2 2
MIRT640229 TOMM40 translocase of outer mitochondrial membrane 40 2 2
MIRT640302 PRR13 proline rich 13 2 2
MIRT641123 NPHP3 nephrocystin 3 2 2
MIRT643418 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT644310 NFKBID NFKB inhibitor delta 2 2
MIRT644343 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT645734 POLR3A RNA polymerase III subunit A 2 2
MIRT648055 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT649461 UBA5 ubiquitin like modifier activating enzyme 5 2 2
MIRT650006 KLB klotho beta 2 2
MIRT650565 YIPF4 Yip1 domain family member 4 2 2
MIRT652638 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653886 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT655365 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT659113 DENND6A DENN domain containing 6A 2 2
MIRT659516 CHST3 carbohydrate sulfotransferase 3 2 2
MIRT659945 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT661382 RHCG Rh family C glycoprotein 2 2
MIRT663106 NPR1 natriuretic peptide receptor 1 2 2
MIRT663756 ZNF285 zinc finger protein 285 2 2
MIRT664553 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT666191 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT666793 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT668751 DDX19B DEAD-box helicase 19B 2 2
MIRT669600 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669703 AAK1 AP2 associated kinase 1 2 2
MIRT669922 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT670002 GPR156 G protein-coupled receptor 156 2 4
MIRT670047 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670296 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670385 EMP2 epithelial membrane protein 2 2 2
MIRT670566 GLTP glycolipid transfer protein 2 2
MIRT671059 KIF1B kinesin family member 1B 2 2
MIRT671080 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT671303 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671803 WISP3 WNT1 inducible signaling pathway protein 3 2 2
MIRT671954 SPPL3 signal peptide peptidase like 3 2 2
MIRT671991 OSTF1 osteoclast stimulating factor 1 2 2
MIRT672090 WDR5B WD repeat domain 5B 2 2
MIRT672269 SHE Src homology 2 domain containing E 2 2
MIRT672445 TTPAL alpha tocopherol transfer protein like 2 2
MIRT672450 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT673649 CYCS cytochrome c, somatic 2 2
MIRT673998 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674052 ATXN3 ataxin 3 2 2
MIRT674243 NUP62 nucleoporin 62 2 2
MIRT674433 MIOX myo-inositol oxygenase 2 4
MIRT674474 BCL2L15 BCL2 like 15 2 2
MIRT675467 NUBPL nucleotide binding protein like 2 2
MIRT675666 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT675976 FAM126B family with sequence similarity 126 member B 2 2
MIRT676063 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT676118 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT676237 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT676256 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676321 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT676739 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT676903 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT677112 SS18L1 SS18L1, nBAF chromatin remodeling complex subunit 2 2
MIRT677321 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677460 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677578 TRIM65 tripartite motif containing 65 2 2
MIRT677642 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT677735 MOB4 MOB family member 4, phocein 2 2
MIRT677828 TSPYL1 TSPY like 1 2 2
MIRT678078 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678137 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT678157 ZNF724P zinc finger protein 724 2 2
MIRT678255 FXN frataxin 2 2
MIRT678321 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678414 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678596 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT678826 PDE6A phosphodiesterase 6A 2 2
MIRT678939 MYADM myeloid associated differentiation marker 2 2
MIRT679045 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT679200 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT679204 FAM9B family with sequence similarity 9 member B 2 2
MIRT679219 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679251 ZNF34 zinc finger protein 34 2 2
MIRT679315 NPHP1 nephrocystin 1 2 2
MIRT679484 CYTIP cytohesin 1 interacting protein 2 2
MIRT679550 LIPG lipase G, endothelial type 2 2
MIRT679624 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT679646 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT679757 TLR6 toll like receptor 6 2 2
MIRT680123 ZNF576 zinc finger protein 576 2 2
MIRT680183 ZNF554 zinc finger protein 554 2 2
MIRT685770 ZNF426 zinc finger protein 426 2 2
MIRT687438 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688384 ENAH ENAH, actin regulator 2 2
MIRT689668 RBM23 RNA binding motif protein 23 2 2
MIRT690030 CCDC90B coiled-coil domain containing 90B 2 2
MIRT691060 CRCP CGRP receptor component 2 2
MIRT691444 CXorf36 chromosome X open reading frame 36