miRTarBase - #MIRT510700


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pre-miRNA Information
pre-miRNA hsa-mir-2909   
Genomic Coordinates chr17: 37033745 - 37033813
Description Homo sapiens miR-2909 stem-loop
Comment This miRNA was referred to as hmiR-che-1 in .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2909
Sequence 4| GUUAGGGCCAACAUCUCUUGG |24
Evidence Experimental
Experiments QPCR
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs187707102 7 dbSNP
rs1375183104 8 dbSNP
rs1174848003 11 dbSNP
rs576577155 21 dbSNP
Putative Targets

Gene Information
Gene Symbol SREK1IP1   
Synonyms P18SRP, SFRS12IP1
Description SREK1 interacting protein 1
Transcript NM_173829   
Expression
Putative miRNA Targets on SREK1IP1
3'UTR of SREK1IP1
(miRNA target sites are highlighted)		 
>SREK1IP1|NM_173829|3'UTR
   1 CTGAGACTTTGGCTTAAGCCGTTAAATTTAAAAATTTGTTTTTAAAACGTGTTTGCCCTTCCTTGGAATTTGCTATATAT
  81 TATGCTTTGCAATAAATCACAGCCTTTTCCATATAGACATTTTTCGTATTTGGGACCATTATCCCTCTGGCAATATATTT
 161 TTAATGTGCTGTAACTGTAAAGTATTAAATCAGTCTTGTTACTTGATAGCCATGCCCCAAGTATAGCTATTTGTGTATAC
 241 TAAACACATCATTTTTGGTATTTGTGTCTCTGTGTGTTTGGCTAGTGTTACTACTTCATAAGTTCATTGTAAAATGGCTT
 321 TACTGCCATCAACATGGGTCATCTACCTAGCAGTTAATGAGTATTGCTGGATCAGGTGTCCACCTTCCAATGATGAAGCA
 401 AGGTAAGGGGTAATGTTTTGCTCTTGACACAGAGAAATTTAATAGCTTTATGTACTAAAATATAATATCTTTTAAAGATA
 481 GTGAAATTCTTCAGTTTTTTAAATCTCTAGGGATTTTTTTTCAATGTTGTAGAAGATGCAGCTGCTTAATGGTCTTGACT
 561 AGGACTTTTTAAATGAATGGTGTCTGCAGGTAGATGATCATGAAAATATCTCTAACAAAGTTTTACTCTTCTATGAAATG
 641 CAGAATTTCTAGTACCTGCCTCCTTTGTTTTTGTAATAATTAAAATACTTCTTGTATAAAGAGATTAGTTCAGCCTGTTA
 721 GTAAGTCTGCAGAGATGATGCTGAGTTGGTTGTGATTTTTAGAATAGACTCCTGGGTTGTTTTACAAATGTGCCATATTG
 801 GCATGTCTTACAGTGATACCTCAAACACAGAAATTTTTATTTAGGAAGATAGCTAAATCTTTATTAGAACTGATTTTTAT
 881 TGTATTCAGTATAAATTTTATGAAGCTTGTTTCTATGAGTACTGTGGAAAATTTTATAAATGTGAGCATATATATTTATT
 961 TTGTCTGACATAATTTGTAGTTTTAAAGCAAGTTTCACACTGAACTTAACGTTTTCATAAATGACCAGTTTGGGATGTTT
1041 CTCTCTTTTACTTTAGTGGCAAACTCAAGAGTAAAAAGTGTCAAAAAAAGAATTGAGAATTTTATTCTGTACTTTTTAAA
1121 ATTTAAGAGCCAGGGAGTTGCATCATGAAAGCCTTTGTATAATAATGGAAATTTTATATGGGTAAGCATTTTCAAACACA
1201 TATTAGTAGATACGTTTTTTAAATTTCTATTTTCACATTGATCAGTGTTACTTTGCTTAATACTTAGGTAGCCCTTATGT
1281 CCACTAAAGTAAATGCTTATGTTGTAGAAGCATCGAACATCAACCAATGTCATGGCACAGCACCAAAGATTGCAAATACC
1361 TCACTATGGTGCGCTTAGAAATTTTCAAATTGATAACCTATAGATACGGCTGCAGGTGAATTCATGATAGTGAAATCAGC
1441 TAAGTATACTTAACCTCACAGGCTAGAAAGGTTTACTGATTCTTGTTTCACCTGGCACCCAATGTGGATACCCTCAGTAA
1521 GACTCAGGGAGCCTTATAACTCCTCTTAACATATGCTTACCCATGCTTAAATTCTAGGGAAGCTGTATCCACAGCCCTCT
1601 GCATTGCAGCCATGAGAGCTCTCACGCTTTCAACCCTTCCATAACCTAATTTAGTCATTTGGGCCTCTCAAAAGGAAATG
1681 CTTTTGTTTAAATAGGTCAGTCAGTTACTGGGAGAAAAAATACAGAGCCAGTAGGTTTTTAGGGATTTGTTTTGCCTTTG
1761 CTGCTAGTTTTTTGAAAATATTCTTCGATTATCAAGATTTTAAAAATCGGTTTTTAATATAAAGCTTTTTTAAAAACGAG
1841 GCTGGCACAAGTGCAGTGGTGTTTCTTTACTCCCACTGCTTGACTTGACTAGCCTTGAAAAAATAACAGTAAAATAAAAT
1921 ATTAAAAAATAATTAGAAAATGCTACAAAGGCAATGACCTTATTCCATTGAGTAAGATAGTTAAAAATGATAGTAATTGT
2001 AGTGAAATAGTTAATTACTTGTAAGTTTTATTACTGTTAATTGTAGAGATTATAAATTGGCTCATTAGGTTTCTGAATGG
2081 TGACACAATAATGACTGAGAAGAGCAAAAGTCAGTCCTCGTTAACTAATGTAGTATGCAAATTAAAATATTTTAATGATC
2161 AGTAATTTTCCCCCCAGAAATGATGTTGGCATTTCTAAGTAAATTTCCCATAATTTTAGCATAGTTTATGAAATTGAATA
2241 AAAATTTATTTTCACTGAAGTAATTTTCTTCTAATATGATATTATTATTGAGATTGGATGCAAATCTCATGAATATGTTT
2321 TAGAAGAAAATTAATGAAATTCCCTCCCAGGCAGTATGTACCAGAAGGAAAACTGAATTTAGCAGTAAAACAGTCCTGGT
2401 CATTCTAACTACCTGTATGATCTTGAACAAAGTCACTTAGTTTCCCTGGGCCTTGGTGTCTTTCGTCTATAAAATATTGT
2481 ACCAGATTATCTCTGAAATCACTTCAAGGTTTAATATATATAATTATCAATATTTTAAAATTCAAGCAATATTCACTTTA
2561 GAAATTATTATAACATTCTATAATAGTAAAGGTTGAATTTATTAATATAATAAACACGTTCAACTTCTTCAAGCAGATAA
2641 TTGATATTTGGTTCATATTCTTACAACCTAATGCATGTCATTTTCACCAAATGCAGGCAGAATTTATATTTAGGTTTGCA
2721 TCTGGAACTAGATTATCTGGCACTTTATGGCCATTATTTTTGGGTTGATGGACCTTCTCACCACACAATTTCCCCCTTTT
2801 TTTTTTTTGCATATCATATGTTGGTTGATATTTCTCAGAGGTATCCCTATTTCTTCATACTTAATATACATCTCCATTTA
2881 CATCTTTGACTCTCTGAGGTCAAAACAACAATAAATGAGAAGTAAAACAACTATATGTGTTTGTATTTACAACTGTATCT
2961 AAAATTATATAACCCTAGTTTACCTTCAGAGTAAACTAGGCTGAAGAGTTGTTAATAATGTTGATAAAAATGCCATTGAA
3041 TCCTTTCTTCAACAAATATTTATTGAGTACCTAACGTGGCAAACGCTGTGCTAAGTACTGGGGATACAGAGATAAGTAAG
3121 ACACATTTGCCTCCCTGAAGGACTTCACAGTGTAGTTGGTAGGAGAAACACCAGAGCATACACCGTTATATAATTAGTGC
3201 AGTAATTGACATGAACATGAGTTTATAGAAACTCGGGGTTACCTAAAGTAGTCTGGATAAATTAGAAGAGGCTACCTAGA
3281 GAAAGTAGTGACTGAATTGCAATTTGATTAAGGATAAGAATGAGGGTTATGGCAGTTCCTGACAGAGTGGGTACTGTGAA
3361 CAAACACCAGAGGTAGAACAAGCTGTGTTATGTGTTTGTCAAGAATTACAAGCAATCTGGTGTTGCTGGTGTATCATAGG
3441 CGAGGCAGGAAGTGGTAAGAATTGAGACTACCATTTTAAGTTCTTAGGAACAGGAGGAAGGAGTCGTGTGTTCCGTGTTT
3521 GGGAGCTTGAACTGTAATGTGTAAGCAATGAGACACCATTAAAGAGTTTCAAGGGGGGCCGGGCACAGTGGCTCACGCCT
3601 GTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACTTGGCG
3681 AAACCCTGTCTCTACTAAAAATAGAAAAATTAGCCGGACGTGGTGACAGGCACCTGTATTCCCAGCTACTCTGGAGTCTG
3761 GGGCAGGAGAATCGCTCAAACCCAGGAGGTGGAAGTTGCAGTAAGCTGAGATCACACCACTGTACTCCAGCCTGGGCGAC
3841 AGAGCGAGACTCTATCTCAAAAAAAAAAAAAGATTTTAAGGAAGGAAATGACTTTTATTAGGGTTTGGTTTTATCAATTT
3921 CATAATCCGATTAATCCCACCATTTTTAAAAGATGAAATTGCTTTCATTAGAAGGCTACATAAAATATAATTTGATTATT
4001 TTAGGCTCTATTATTAGACTCACATTTCTTTCTACAGTCTCATTATTATTTCCAAAAATTACACAGTAACCTAAATCATC
4081 TAAAAACACATAAAGCTACTGTATTCTTTATTAGATCCATCCCCAGAGTTATATGTACATGTACATACTTTGAGATGTGT
4161 TTTGTTCTTAATTGTATTTTAGGTTATTTTTGACTGACTTAAATTCTATCACTATTTTAATATTTGTTAGGTCCGAATAA
4241 ACCATTTAGAATATTTTTCAGTGTACAAAATGTGCTGTAATTTAATAAGGCCCCTTGCTTTTAAAATTTGGCTTAACCTG
4321 TGAAGCACAACTGCTTCAGAGTTACAGAGAAACATACCAGTTGGTCCACTGGATGAGCCCTGTGGTTCTACCTCAGGTAA
4401 CCTAGTGATAAGCTAGCTCAGCAGGGAGTGCTTCAAGGACTCCAGCTGATCCTAGTGCTGAGACCAAAACTTCCTGGACA
4481 TTGGGTGCCCAAGAACAGTAGGTTTCTTATACCAGTGTGACAATAATCCCAGTTGCGAAGGCCAGTCTTCTGATCTCAGT
4561 ATCTCCTCCCAACTCCTCTAAAAATAGGTAGAGTGGCAGAGAATTGGGGTGCCTCTTCTATAGCACAACCCATGATGCAT
4641 CCAGTCATGCCTGACCCCACTATGCCTTTCCCACAAATTGGGAGGAGTTGGGGCAGTGAGCATTTTGCTAGCTCTGTCTG
4721 TTTCTTGCTTCTTGTGCCATTTATAGTCCTTGGCCATGAGCAACAAAAGTAGAATGGTGCCAGTGCCTTAACTAAATTTT
4801 TCTCAACCTAGATTTTCACCTGAGACAATATGGTAATATTATTAAATTACTGTAAAGATAGCAAATTTTCTGGGATACTT
4881 TAAAATCAAAGTTGTATCAAAGATCAAGAAGCACCCATAAAAGCTTTATAAACTTTCACAAAAAATAAGTGAAAATTCTT
4961 TGTTTTTATGGCCGTGTAAAATGTCATTTTTATAATGGAAATGTCTTAATTTTCAAACTTAACATATACTTTAAGCAATT
5041 TTAGTATTTAAACCTTTGCAAAATTGTATTTTTGAATGTGAAGTTCAACTTTGGCAGTAGGTTGTTGCAATAGTGATCTG
5121 GCACTATGGTGCCAGTATAGCCACATAGGGTTATTTAAATTAATTAAATAAATGAAAAATTTTATTTTTTCAGTTGCATT
5201 AGCCACATCTTAAGTGTTCAGTAGCCACATGTGACTGGTGGCTACCATATTAGTGCAGATATAGAAAGAACATTTCCATC
5281 ATCACAGAAACTTCTCTTAATTCTGGTCTAGAAGATAACCTTAGTACTTGGTAGAAATTTTGACAGGCTAATGACGAAAA
5361 GTTTGTAACCCTGAGCTTTGCATGCCCAAGAAAAATAAGGTATTCTTTTTTATATATCAGACCAGAGAAGCTGTATTCAG
5441 CACATTTTGAAATGCTAGTTTTTGGCTATGGCCATACCACCCTAAATGTGCCAGATCTTGTCTGAAATGCTAGTTTCTGA
5521 CTACAAAAACTACAGGACATAGTAGATATGCTCAGTAGAGCTGCTTAAAATAATTCCCTTTTTTTTTCTGTTGAATTCTG
5601 TTACAAAACCAGGTCTGTGTTATAATAGAAAACACACTTATGAATAAAAATCTTTAAAAATTATAATTTGCAGAAATTAG
5681 TTTTATTTCTAGATTTCTAGGTGGTATTAATGTGATAGCATTAGGTGGGACCAGAGAACTCATTTGTTTTGTAGCTTTCA
5761 TTATACAGATTATTTAGGAAATATATCAGCAAAGGATTTTTTGTTATGCTTATCTCTTGAAACAAAATATTTATTGTACA
5841 GATTATACATTGTGATTTTTTTGTTACTGAGTATATTGTTTGTGCCCAGAAAAATCTAAAAAGATGTGGGTTGACTTCTA
5921 AGAGATTTAAGAACAAGTCACCTCTAGTTTTTAAGACAGTTCCCTTGATATTTACCTATCCAGTACCATCTCATAAGAAT
6001 AACTGCCTGTAAGTATCAGAAAGTTGAGAAATGCTGGTAATGTGACATAAACTTCTCACTGTTCTTCACTGAGATAGGAC
6081 TGCTTATCTTGTTATTGATAAATTATTTAATTTCTCCTGAATAATTAGCATAATCTCATGTGATACAGAAACATCTTAAT
6161 TAGCAAATAAATTTATACAAAGGAAAACCAATAAAACCTTAATGTGCGTTTAATAAAGTAACTGAATGATCAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUUC-UC-UACAAC-----CGGGAUUg 5'
            ||| || ||| ||     |||:||| 
Target 5' aaAAGTAGAATGGTGCCAGTGCCTTAAc 3'
 4765 - 4792 139.00 -12.10
2 
miRNA  3' ggUUCUCUACAACCGGGAuug 5'
            || | :|||| |||||   
Target 5' ttAAAACGTGTTTGCCCTtcc 3'
 42 - 62 127.00 -11.90
3 
miRNA  3' gguucucuacaaccGGGAUUg 5'
                        |||||| 
Target 5' ctatggccataccaCCCTAAa 3'
 5466 - 5486 120.00 -8.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30467997 5 COSMIC
COSN30517013 13 COSMIC
COSN31493482 17 COSMIC
COSN26996794 48 COSMIC
COSN30110987 49 COSMIC
COSN31579431 51 COSMIC
COSN30450444 125 COSMIC
COSN30470037 143 COSMIC
COSN7950620 144 COSMIC
COSN31515629 252 COSMIC
COSN28790874 370 COSMIC
COSN31517306 463 COSMIC
COSN31535323 469 COSMIC
COSN31521660 513 COSMIC
COSN22096118 550 COSMIC
COSN5609162 652 COSMIC
COSN31609721 701 COSMIC
COSN27148922 737 COSMIC
COSN26553440 807 COSMIC
COSN31491321 815 COSMIC
COSN27150303 864 COSMIC
COSN2114628 1096 COSMIC
COSN6925018 1477 COSMIC
COSN21671481 1908 COSMIC
COSN21625688 2188 COSMIC
COSN16064444 2190 COSMIC
COSN20101308 2916 COSMIC
COSN32056935 2931 COSMIC
COSN9454699 3214 COSMIC
COSN2114626 3837 COSMIC
COSN25999638 3922 COSMIC
COSN1318099 3948 COSMIC
COSN9309590 4181 COSMIC
COSN6586723 4235 COSMIC
COSN29282322 4244 COSMIC
COSN24159965 4394 COSMIC
COSN29301368 4865 COSMIC
COSN9955392 5262 COSMIC
COSN25829234 5370 COSMIC
COSN29731842 5578 COSMIC
COSN20091200 5652 COSMIC
COSN19178429 5678 COSMIC
COSN27092675 5707 COSMIC
COSN31962414 5885 COSMIC
COSN32188566 6097 COSMIC
COSN1318097 6207 COSMIC
COSN7950618 6208 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1175788289 2 dbSNP
rs1410511105 4 dbSNP
rs1465533775 4 dbSNP
rs762871185 10 dbSNP
rs775461266 12 dbSNP
rs538870275 14 dbSNP
rs1237290615 18 dbSNP
rs1176412173 19 dbSNP
rs142639432 20 dbSNP
rs776112294 21 dbSNP
rs770640918 22 dbSNP
rs1221556069 25 dbSNP
rs1027617244 29 dbSNP
rs1343557329 30 dbSNP
rs1262988051 32 dbSNP
rs748406141 37 dbSNP
rs774786211 38 dbSNP
rs1307439610 40 dbSNP
rs1248522874 41 dbSNP
rs1312483502 48 dbSNP
rs371102556 49 dbSNP
rs1483775793 61 dbSNP
rs959573277 67 dbSNP
rs1034917045 71 dbSNP
rs983248307 75 dbSNP
rs749913798 77 dbSNP
rs1490012401 79 dbSNP
rs1193364390 82 dbSNP
rs1415209652 83 dbSNP
rs1428278596 87 dbSNP
rs10434541 97 dbSNP
rs1026117330 111 dbSNP
rs902373323 125 dbSNP
rs1363744137 126 dbSNP
rs1434214401 128 dbSNP
rs560105712 133 dbSNP
rs1490263515 134 dbSNP
rs1010695082 145 dbSNP
rs1213744155 147 dbSNP
rs893526072 170 dbSNP
rs1343888861 197 dbSNP
rs548206377 202 dbSNP
rs186267119 211 dbSNP
rs1290406082 214 dbSNP
rs762305508 218 dbSNP
rs1322057061 220 dbSNP
rs1018270824 221 dbSNP
rs1006925031 223 dbSNP
rs541719350 226 dbSNP
rs1247798478 229 dbSNP
rs904773479 231 dbSNP
rs1485768782 239 dbSNP
rs1185116786 260 dbSNP
rs559686648 267 dbSNP
rs1450355773 268 dbSNP
rs1010785795 280 dbSNP
rs1283504260 284 dbSNP
rs754288707 285 dbSNP
rs944949158 291 dbSNP
rs908083045 292 dbSNP
rs891976508 294 dbSNP
rs1279695304 298 dbSNP
rs761587204 299 dbSNP
rs1429882569 313 dbSNP
rs952129694 316 dbSNP
rs760987281 317 dbSNP
rs1367011789 331 dbSNP
rs938424486 332 dbSNP
rs927061201 334 dbSNP
rs1343308090 337 dbSNP
rs1304551842 343 dbSNP
rs1356730923 349 dbSNP
rs10075967 370 dbSNP
rs941741061 371 dbSNP
rs1195045270 378 dbSNP
rs1316864796 381 dbSNP
rs1214222003 383 dbSNP
rs1270418972 389 dbSNP
rs909096311 390 dbSNP
rs983341354 391 dbSNP
rs768588291 392 dbSNP
rs1473847482 418 dbSNP
rs1182546950 420 dbSNP
rs1035415679 423 dbSNP
rs1400049291 432 dbSNP
rs1156789296 434 dbSNP
rs562306717 436 dbSNP
rs950577904 451 dbSNP
rs543990026 454 dbSNP
rs1335721569 457 dbSNP
rs1399531798 462 dbSNP
rs923149651 465 dbSNP
rs180800361 466 dbSNP
rs976345426 467 dbSNP
rs1480139639 469 dbSNP
rs563505861 469 dbSNP
rs138030008 479 dbSNP
rs143530194 481 dbSNP
rs1018409345 483 dbSNP
rs148861812 490 dbSNP
rs1203412829 493 dbSNP
rs1488688105 494 dbSNP
rs1241247656 499 dbSNP
rs1261609863 501 dbSNP
rs1444379844 501 dbSNP
rs1213369122 507 dbSNP
rs1211009818 509 dbSNP
rs1232388275 511 dbSNP
rs968713202 518 dbSNP
rs1180011593 522 dbSNP
rs1268655131 523 dbSNP
rs893573015 524 dbSNP
rs1175468378 531 dbSNP
rs543416503 531 dbSNP
rs1399744232 539 dbSNP
rs1415824216 543 dbSNP
rs1021856176 549 dbSNP
rs1353472354 551 dbSNP
rs1407447695 557 dbSNP
rs996981469 561 dbSNP
rs1351673498 568 dbSNP
rs1223394790 580 dbSNP
rs1010504841 584 dbSNP
rs900874571 587 dbSNP
rs892065381 590 dbSNP
rs541419519 594 dbSNP
rs772310869 599 dbSNP
rs1057284689 605 dbSNP
rs1003484531 611 dbSNP
rs1482138880 615 dbSNP
rs905619723 647 dbSNP
rs11546256 649 dbSNP
rs1044130355 651 dbSNP
rs1368762097 665 dbSNP
rs944966551 676 dbSNP
rs1198517361 681 dbSNP
rs941667492 682 dbSNP
rs887458995 684 dbSNP
rs759729403 688 dbSNP
rs929221890 693 dbSNP
rs923209288 694 dbSNP
rs749155832 698 dbSNP
rs6887490 714 dbSNP
rs930786990 715 dbSNP
rs757174901 721 dbSNP
rs1370569019 723 dbSNP
rs1404899914 725 dbSNP
rs1347518975 727 dbSNP
rs943199714 734 dbSNP
rs911274702 736 dbSNP
rs1234386400 742 dbSNP
rs747238795 746 dbSNP
rs558838257 752 dbSNP
rs1230833935 766 dbSNP
rs1427211320 782 dbSNP
rs1178869717 784 dbSNP
rs982488097 786 dbSNP
rs966620712 787 dbSNP
rs1453150552 788 dbSNP
rs1021615710 795 dbSNP
rs1241267808 797 dbSNP
rs989382288 801 dbSNP
rs957879951 810 dbSNP
rs989245853 819 dbSNP
rs1248590889 824 dbSNP
rs538980603 825 dbSNP
rs956306604 826 dbSNP
rs576306717 832 dbSNP
rs932042308 835 dbSNP
rs1393489612 839 dbSNP
rs1264393537 843 dbSNP
rs900883100 844 dbSNP
rs556385969 846 dbSNP
rs1036391557 857 dbSNP
rs1292974819 858 dbSNP
rs1213206001 887 dbSNP
rs1298585862 887 dbSNP
rs1003005512 901 dbSNP
rs1019277547 905 dbSNP
rs1367747526 909 dbSNP
rs79010607 911 dbSNP
rs1452476302 913 dbSNP
rs1358427010 915 dbSNP
rs1022642393 942 dbSNP
rs538269863 952 dbSNP
rs1463369695 953 dbSNP
rs1190184344 963 dbSNP
rs781046880 965 dbSNP
rs1248226824 969 dbSNP
rs1466588545 977 dbSNP
rs781156297 980 dbSNP
rs1369649836 986 dbSNP
rs568153448 1000 dbSNP
rs1458869080 1007 dbSNP
rs1158439481 1008 dbSNP
rs547928820 1010 dbSNP
rs1055694557 1011 dbSNP
rs11285338 1011 dbSNP
rs1405592432 1017 dbSNP
rs938118408 1021 dbSNP
rs1314951540 1035 dbSNP
rs1341083243 1046 dbSNP
rs1430116047 1047 dbSNP
rs1287648320 1049 dbSNP
rs1390482035 1050 dbSNP
rs534631851 1059 dbSNP
rs1326865606 1060 dbSNP
rs1210337491 1061 dbSNP
rs1047377891 1065 dbSNP
rs6882680 1071 dbSNP
rs982128686 1077 dbSNP
rs1198305612 1080 dbSNP
rs6449747 1088 dbSNP
rs1423876220 1090 dbSNP
rs1040701787 1093 dbSNP
rs1244864965 1093 dbSNP
rs1200586824 1094 dbSNP
rs189350218 1104 dbSNP
rs532498806 1111 dbSNP
rs1473802943 1115 dbSNP
rs1249294565 1119 dbSNP
rs979280800 1132 dbSNP
rs1206102141 1133 dbSNP
rs1358882120 1135 dbSNP
rs1304799475 1136 dbSNP
rs1344776639 1136 dbSNP
rs947438295 1145 dbSNP
rs867298497 1150 dbSNP
rs1390861626 1157 dbSNP
rs1307396253 1159 dbSNP
rs1348583169 1177 dbSNP
rs1230112484 1190 dbSNP
rs1028163518 1200 dbSNP
rs1311333004 1203 dbSNP
rs113345429 1204 dbSNP
rs1257391059 1206 dbSNP
rs1381274150 1210 dbSNP
rs549958897 1213 dbSNP
rs779622816 1214 dbSNP
rs529803860 1226 dbSNP
rs186061067 1229 dbSNP
rs1431802245 1237 dbSNP
rs982115070 1241 dbSNP
rs1378402083 1244 dbSNP
rs970178944 1251 dbSNP
rs541133885 1253 dbSNP
rs1372414841 1257 dbSNP
rs1327234587 1263 dbSNP
rs1371379427 1271 dbSNP
rs1308546328 1272 dbSNP
rs1366729340 1281 dbSNP
rs533727133 1293 dbSNP
rs1162743205 1300 dbSNP
rs1303013879 1305 dbSNP
rs758019395 1308 dbSNP
rs141943020 1314 dbSNP
rs1055302139 1315 dbSNP
rs1006375892 1316 dbSNP
rs887521262 1318 dbSNP
rs1418006433 1323 dbSNP
rs564964738 1327 dbSNP
rs1178418876 1340 dbSNP
rs1268448176 1341 dbSNP
rs1046541051 1347 dbSNP
rs993144434 1350 dbSNP
rs901519032 1355 dbSNP
rs1290543296 1357 dbSNP
rs1171105235 1364 dbSNP
rs1040267629 1365 dbSNP
rs1007463243 1366 dbSNP
rs1295097486 1367 dbSNP
rs1267786608 1371 dbSNP
rs745452495 1372 dbSNP
rs115388601 1373 dbSNP
rs1305027687 1392 dbSNP
rs946569233 1393 dbSNP
rs1366794234 1396 dbSNP
rs914620767 1400 dbSNP
rs1228471879 1407 dbSNP
rs1459196 1408 dbSNP
rs989445711 1413 dbSNP
rs936603018 1427 dbSNP
rs1266420480 1428 dbSNP
rs921154667 1439 dbSNP
rs147552918 1447 dbSNP
rs181597851 1448 dbSNP
rs1181371990 1454 dbSNP
rs965620335 1459 dbSNP
rs928647122 1465 dbSNP
rs981434216 1478 dbSNP
rs16893082 1481 dbSNP
rs1163787131 1487 dbSNP
rs951129398 1489 dbSNP
rs1453043109 1491 dbSNP
rs1318195370 1499 dbSNP
rs1361990851 1502 dbSNP
rs1160710612 1506 dbSNP
rs916197427 1510 dbSNP
rs1376274403 1512 dbSNP
rs1230587622 1514 dbSNP
rs1314058872 1515 dbSNP
rs984921927 1517 dbSNP
rs952220832 1520 dbSNP
rs1270355501 1526 dbSNP
rs1465536330 1527 dbSNP
rs1209595889 1528 dbSNP
rs1026034642 1530 dbSNP
rs574122143 1542 dbSNP
rs114699890 1544 dbSNP
rs1473816604 1548 dbSNP
rs965844985 1550 dbSNP
rs534448959 1564 dbSNP
rs1418461370 1565 dbSNP
rs1472198437 1566 dbSNP
rs1019011702 1578 dbSNP
rs1007265157 1587 dbSNP
rs2068791 1591 dbSNP
rs1449542520 1597 dbSNP
rs555320808 1598 dbSNP
rs1002440710 1599 dbSNP
rs145683475 1603 dbSNP
rs549305042 1625 dbSNP
rs1290601326 1626 dbSNP
rs892308789 1637 dbSNP
rs1210793605 1641 dbSNP
rs1350665638 1645 dbSNP
rs1009662560 1652 dbSNP
rs892512922 1654 dbSNP
rs1276734096 1659 dbSNP
rs1053189272 1663 dbSNP
rs934725350 1664 dbSNP
rs753074548 1665 dbSNP
rs1045701261 1667 dbSNP
rs936636765 1669 dbSNP
rs948762671 1671 dbSNP
rs1253784592 1673 dbSNP
rs1470386470 1678 dbSNP
rs1171675605 1680 dbSNP
rs1422588307 1719 dbSNP
rs1415769952 1721 dbSNP
rs1221854514 1727 dbSNP
rs1173752473 1730 dbSNP
rs538598184 1732 dbSNP
rs1408550120 1736 dbSNP
rs1324043318 1745 dbSNP
rs1040051649 1747 dbSNP
rs1382760568 1751 dbSNP
rs943968911 1763 dbSNP
rs1347437286 1765 dbSNP
rs985020519 1768 dbSNP
rs1457338334 1786 dbSNP
rs912431507 1787 dbSNP
rs1340125677 1791 dbSNP
rs952221747 1795 dbSNP
rs919402004 1803 dbSNP
rs972286985 1808 dbSNP
rs1438229938 1810 dbSNP
rs1197927422 1811 dbSNP
rs570062757 1816 dbSNP
rs1478837766 1817 dbSNP
rs966177480 1819 dbSNP
rs569968544 1825 dbSNP
rs1427251792 1829 dbSNP
rs1171093860 1832 dbSNP
rs1200068426 1836 dbSNP
rs951137444 1837 dbSNP
rs973778681 1838 dbSNP
rs1018742166 1844 dbSNP
rs1333135319 1846 dbSNP
rs1007191569 1853 dbSNP
rs1260305536 1866 dbSNP
rs958645570 1867 dbSNP
rs953031219 1868 dbSNP
rs1251911190 1871 dbSNP
rs1211056248 1872 dbSNP
rs1209099349 1875 dbSNP
rs1287485571 1881 dbSNP
rs1465413610 1883 dbSNP
rs1002901667 1885 dbSNP
rs1221761527 1888 dbSNP
rs1347450008 1895 dbSNP
rs551819569 1897 dbSNP
rs1189976408 1898 dbSNP
rs1025148734 1903 dbSNP
rs141807628 1907 dbSNP
rs781399104 1919 dbSNP
rs892565083 1922 dbSNP
rs1031240572 1929 dbSNP
rs1320198192 1932 dbSNP
rs1386753630 1951 dbSNP
rs1437492836 1954 dbSNP
rs1053899623 1957 dbSNP
rs1435650637 1958 dbSNP
rs1405244084 1963 dbSNP
rs1000941895 1970 dbSNP
rs899873163 1974 dbSNP
rs1336724218 1978 dbSNP
rs1334195170 1982 dbSNP
rs1039701973 1986 dbSNP
rs114076109 1987 dbSNP
rs147932429 1990 dbSNP
rs547546156 1991 dbSNP
rs1261895724 1995 dbSNP
rs1045796728 2005 dbSNP
rs912441269 2007 dbSNP
rs1475790926 2013 dbSNP
rs1475295610 2014 dbSNP
rs1410125960 2019 dbSNP
rs1289652144 2021 dbSNP
rs1459033914 2021 dbSNP
rs1401670023 2027 dbSNP
rs1046899336 2034 dbSNP
rs1336197224 2035 dbSNP
rs1190894864 2041 dbSNP
rs1357324181 2050 dbSNP
rs1233753342 2057 dbSNP
rs948692855 2068 dbSNP
rs1326803372 2077 dbSNP
rs1240831553 2086 dbSNP
rs894498467 2088 dbSNP
rs1260918341 2093 dbSNP
rs919747809 2095 dbSNP
rs1198252488 2096 dbSNP
rs974268343 2097 dbSNP
rs1243038628 2100 dbSNP
rs1486285887 2103 dbSNP
rs1182012403 2110 dbSNP
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rs930878589 2119 dbSNP
rs565028537 2120 dbSNP
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rs903225948 5326 dbSNP
rs978720209 5327 dbSNP
rs1022061569 5347 dbSNP
rs146800195 5355 dbSNP
rs1236910785 5359 dbSNP
rs1236423273 5370 dbSNP
rs1437828592 5373 dbSNP
rs143589026 5375 dbSNP
rs1364217321 5394 dbSNP
rs1050329493 5400 dbSNP
rs1014077984 5412 dbSNP
rs539847969 5414 dbSNP
rs960777047 5415 dbSNP
rs1403921843 5419 dbSNP
rs750530588 5420 dbSNP
rs1035073284 5421 dbSNP
rs202059503 5422 dbSNP
rs901718997 5427 dbSNP
rs1036120707 5430 dbSNP
rs1002130173 5431 dbSNP
rs905209022 5438 dbSNP
rs532741120 5439 dbSNP
rs1447666934 5446 dbSNP
rs1258079032 5450 dbSNP
rs1038797668 5453 dbSNP
rs947769840 5455 dbSNP
rs1256281798 5463 dbSNP
rs1459128990 5480 dbSNP
rs1178030422 5489 dbSNP
rs1179282765 5491 dbSNP
rs1005788086 5508 dbSNP
rs887390543 5511 dbSNP
rs1389512368 5512 dbSNP
rs79876487 5514 dbSNP
rs1432465301 5517 dbSNP
rs544529739 5518 dbSNP
rs1166560813 5526 dbSNP
rs991773678 5527 dbSNP
rs1047258300 5532 dbSNP
rs1180766016 5536 dbSNP
rs1470032755 5540 dbSNP
rs1169482778 5541 dbSNP
rs960242369 5549 dbSNP
rs1390666349 5551 dbSNP
rs557296098 5557 dbSNP
rs934148792 5558 dbSNP
rs1385584472 5564 dbSNP
rs1303959182 5577 dbSNP
rs112855604 5578 dbSNP
rs1238821133 5579 dbSNP
rs564718998 5587 dbSNP
rs1199356574 5588 dbSNP
rs1213494149 5588 dbSNP
rs1264923607 5588 dbSNP
rs1488154268 5590 dbSNP
rs1207954153 5593 dbSNP
rs1269259396 5594 dbSNP
rs1348967909 5598 dbSNP
rs1274570789 5600 dbSNP
rs928788717 5602 dbSNP
rs1192614073 5603 dbSNP
rs183415725 5604 dbSNP
rs942337759 5609 dbSNP
rs967878781 5628 dbSNP
rs1348794228 5635 dbSNP
rs1295779845 5637 dbSNP
rs1366682913 5641 dbSNP
rs563710169 5652 dbSNP
rs1021741113 5660 dbSNP
rs1342675904 5662 dbSNP
rs978865662 5664 dbSNP
rs1227792045 5669 dbSNP
rs1377278318 5673 dbSNP
rs112624903 5675 dbSNP
rs149314188 5712 dbSNP
rs1247016759 5715 dbSNP
rs191575238 5724 dbSNP
rs539862919 5725 dbSNP
rs1305935510 5727 dbSNP
rs1489107297 5729 dbSNP
rs1186716635 5736 dbSNP
rs1431621922 5741 dbSNP
rs1373539443 5749 dbSNP
rs1036173129 5753 dbSNP
rs1163518135 5767 dbSNP
rs1166240491 5770 dbSNP
rs1421490005 5778 dbSNP
rs570822623 5780 dbSNP
rs1004691131 5784 dbSNP
rs1386416548 5784 dbSNP
rs887588202 5791 dbSNP
rs959877239 5793 dbSNP
rs1362810260 5797 dbSNP
rs557059646 5802 dbSNP
rs1302508618 5803 dbSNP
rs1377195291 5807 dbSNP
rs1397860184 5807 dbSNP
rs1002272327 5812 dbSNP
rs1360150116 5813 dbSNP
rs947787587 5815 dbSNP
rs1251632897 5818 dbSNP
rs1203421450 5819 dbSNP
rs916257445 5823 dbSNP
rs1056101076 5824 dbSNP
rs1216180708 5824 dbSNP
rs537774416 5826 dbSNP
rs928841186 5828 dbSNP
rs1243211737 5842 dbSNP
rs1439663160 5843 dbSNP
rs1157360620 5849 dbSNP
rs1382650411 5850 dbSNP
rs139580244 5851 dbSNP
rs1175709401 5863 dbSNP
rs775169359 5867 dbSNP
rs967597126 5875 dbSNP
rs1467760375 5879 dbSNP
rs1006004402 5883 dbSNP
rs548775088 5895 dbSNP
rs1446015773 5896 dbSNP
rs953432444 5911 dbSNP
rs1028955065 5922 dbSNP
rs1350093724 5932 dbSNP
rs1286271201 5934 dbSNP
rs1310136744 5941 dbSNP
rs1211758170 5944 dbSNP
rs1263273534 5960 dbSNP
rs1456945215 5961 dbSNP
rs564652125 5971 dbSNP
rs528618123 5973 dbSNP
rs1240577818 5985 dbSNP
rs1470765157 6002 dbSNP
rs186179648 6019 dbSNP
rs1397152036 6024 dbSNP
rs1047354071 6026 dbSNP
rs1423503361 6030 dbSNP
rs965948990 6031 dbSNP
rs1362735620 6041 dbSNP
rs998327173 6048 dbSNP
rs1177391575 6051 dbSNP
rs546257515 6052 dbSNP
rs1399772259 6054 dbSNP
rs901361080 6055 dbSNP
rs1333375419 6056 dbSNP
rs1356224192 6057 dbSNP
rs1442823303 6057 dbSNP
rs182205207 6058 dbSNP
rs1005204070 6060 dbSNP
rs1225063746 6074 dbSNP
rs189591523 6077 dbSNP
rs559020124 6082 dbSNP
rs543861907 6095 dbSNP
rs887650569 6097 dbSNP
rs1039919609 6104 dbSNP
rs1049334009 6110 dbSNP
rs1221435247 6114 dbSNP
rs764947713 6126 dbSNP
rs1409288765 6137 dbSNP
rs879131847 6139 dbSNP
rs942454283 6143 dbSNP
rs1012005273 6154 dbSNP
rs1479222278 6172 dbSNP
rs1200549048 6173 dbSNP
rs904307010 6182 dbSNP
rs1476933041 6202 dbSNP
rs1172987916 6206 dbSNP
rs540665982 6207 dbSNP
rs561793180 6208 dbSNP
rs1348005764 6213 dbSNP
rs1406546242 6214 dbSNP
rs1303471193 6218 dbSNP
rs1339504805 6222 dbSNP
rs1216408671 6225 dbSNP
rs1251879290 6231 dbSNP
rs1209704123 6235 dbSNP
rs752580155 6237 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguucucuacaaccGGGAUUg 5'
                        |||||| 
Target 5' ----ggccauaccaCCCUAAa 3'
 		1 - 17
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 285672.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguucucuacaaccGGGAUUg 5'
                        |||||| 
Target 5' cuauggccauaccaCCCUAAa 3'
 		3 - 23
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 285672.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_173829 | 3UTR | CCAAGAAAAAUAAGGUAUUCUUUUUUAUAUAUCAGACCAGAGAAGCUGUAUUCAGCACAUUUUGAAAUGCUAGUUUUUGGCUAUGGCCAUACCACCCUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_173829 | 3UTR | AGAGAAGCUGUAUUCAGCACAUUUUGAAAUGCUAGUUUUUGGCUAUGGCCAUACCACCCUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_173829 | 3UTR | UCAGACCAGAGAAGCUGUAUUCAGCACAUUUUGAAAUGCUAGUUUUUGGCUAUGGCCAUACCACCCUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_173829 | 3UTR | UCAGACCAGAGAAGCUGUAUUCAGCACAUUUUGAAAUGCUAGUUUUUGGCUAUGGCCAUACCACCCUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000513458.4 | 3UTR | GGCCAUACCACCCUAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000513458.4 | 3UTR | GGCUAUGGCCAUACCACCCUAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000513458.4 | 3UTR | GGCUAUGGCCAUACCACCCUAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000513458.4 | 3UTR | GCUAUGGCCAUACCACCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000513458.4 | 3UTR | GGCUAUGGCCAUACCACCCUAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
33 hsa-miR-2909 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT254788 XRCC6 X-ray repair cross complementing 6 2 4
MIRT464426 UHMK1 U2AF homology motif kinase 1 2 2
MIRT478185 DDX6 DEAD-box helicase 6 2 6
MIRT481768 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT489915 RTKN rhotekin 2 2
MIRT500566 VPS4A vacuolar protein sorting 4 homolog A 2 8
MIRT510700 SREK1IP1 SREK1 interacting protein 1 2 6
MIRT513331 CDK2 cyclin dependent kinase 2 2 4
MIRT524310 CTC1 CST telomere replication complex component 1 2 4
MIRT533571 TOMM40L translocase of outer mitochondrial membrane 40 like 2 2
MIRT537784 EIF4E3 eukaryotic translation initiation factor 4E family member 3 2 2
MIRT540489 ZMAT4 zinc finger matrin-type 4 2 8
MIRT547020 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT549561 C19orf12 chromosome 19 open reading frame 12 2 2
MIRT557346 HBP1 HMG-box transcription factor 1 2 4
MIRT564692 ZNF322P1 zinc finger protein 322 pseudogene 1 2 2
MIRT570167 LIPG lipase G, endothelial type 2 2
MIRT621677 UBE2QL1 ubiquitin conjugating enzyme E2 Q family like 1 2 2
MIRT629121 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 4
MIRT633745 MCM9 minichromosome maintenance 9 homologous recombination repair factor 2 2
MIRT634178 TXNDC16 thioredoxin domain containing 16 2 2
MIRT646387 SLC22A6 solute carrier family 22 member 6 2 2
MIRT651181 ZNF281 zinc finger protein 281 2 2
MIRT651892 UFD1L ubiquitin recognition factor in ER associated degradation 1 2 2
MIRT675180 KIF1C kinesin family member 1C 2 2
MIRT682670 CPM carboxypeptidase M 2 2
MIRT685990 NEK4 NIMA related kinase 4 2 2
MIRT698850 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT699396 SLC2A1 solute carrier family 2 member 1 2 2
MIRT723260 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 2
MIRT725320 NFASC neurofascin 2 2
MIRT734596 CD276 CD276 molecule 2 0
MIRT734938 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-2909 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2909 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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