pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NRF1   
Synonyms ALPHA-PAL
Description nuclear respiratory factor 1
Transcript NM_001040110   
Other Transcripts NM_005011   
Expression
Putative miRNA Targets on NRF1
3'UTR of NRF1
(miRNA target sites are highlighted)
>NRF1|NM_001040110|3'UTR
   1 CATACAGCCATATTATGGCATCGTTTTCTAGTCTACTTCAAAATTTTTTACACGTTTGCAGAGGTGCAATCAAATGGAAT
  81 TAAGTCTCTCGACTTTGGAAGGAAAGTTTTGTTAACCTTTTTTTTTTTAAAAGGAAGAAAGCGGATTTTGGAATTGCATT
 161 TTTTAAAGCACCACTCTTGATTTTCTGGGATTGGTGAAGAAACTGCATTGTCAATTTCACTGTCCCAAAAAAGCCAAATT
 241 GTGGCAGGACTTCTTTCTGCGGAAATGTGTGTGTATACTTATGTGTGTGTATGTGTGAGTGTGAATATATGTATATGTGT
 321 ACATATGGACATACACATTTACATATATATAAAGTATATATATACATATATATATATATATATGTATGAAACCCGCATGG
 401 AATTATCTGTATGAAATCAAGGTGCGCTGTGGAAACAATAATTCACCCAGTTTAGTGGGTGGTAGGGTACGTGGCCAGAC
 481 ACAGTCACCCAGTTTTTGTTCATACCAGGGTCATGCGTTGAGCTACTGACAAACTCAGGCGGAGGTGACCATGCCCTTCA
 561 CCAAAGCTGCCTCCCAGTGGCCACACAGAACTCTCCCTGCTGGACTCACCTGAGGAAAGAGGCTCCAGCATGGGGTGGGT
 641 CAGAGATGTGCTTGCAAGGTCCAGGGACTGCGTGGTCTGCCAGCTGAGATGCTCCTCGGGCTGGCCCAGGTGCTGACCTT
 721 GCCACAGGCAGATGAATGTCTTGAAAGCTCCCGGGCCTCAGCCTCCCATCTCCTCTCCTTCCCAGGAATCCTTGATCTCA
 801 TGACTATTAAAATGTTGCTCTGGTTTTAAGGTCAGTCCTGAATTGCTCGTATATATGAACTGAAGGTAACCGAAGTATTA
 881 GGGGTTTGAGGAGTGCGTGCGTGTAAGTGTGCTTGTGTGTGTGCGTGCATGGTGGGGGAGAGGATGGGAAGGGGGCGGGG
 961 GCAGTGGAAGGGAAAGGAAGGAAAGAAAAATCGTCCTAGACCAGGATACACCCGTGGGAGCAATTTTCTCTACTGTCTGT
1041 AGCTTCACAGAGGAGGCGCTGGAATGAACAAGAAGAGACATCTGGTCTGTGGCCACAGCACCCTGAACGCCCCTGATCTT
1121 GTGTGATCTTGGAAGCTAAGCTTGGTTGGGCCCGGTCAGTACGCGGAAGGGAAGAAGGGACACCTGGCCATAGAAAACAG
1201 CTGAGGGTGTTTGCTGTGTTCCTGGATCAGGCCCTGCTTCAGAAGGGACTCCTGGAGGCCCATGTTCCTTGATGCAACCT
1281 CGTGGCCCAGGCCGGGAGCAGCTTGCCTCCTCAGAGGTGTTGACTATCTGGGTGTTCTTGGTAACCGTTAACTCTGTCTT
1361 TCTCAGCTGCAAGCCCTGAGTCTCCAGTAGCTGAATTCACCTGACTTTTCAACAGGCCAAATCTCTGAACCTTGAGTACA
1441 GGGACAGCTCCTCCTCCCTCCTCCCAGCTCTCCCCATGTGTGTGATGGTGTATTTAATGTGTTTTTTTAATGCGACATTA
1521 AAAGATTCTCCACGTCTTGCTCAACCTTTGAGAGAAGTTTCAGATTCTTGTATTTGCTTGTTTTATATAAAACTATCTAA
1601 TGTTCTTTATATGTTCTTTTCTGTACGTAATGGGGGGAGGGGAGGGAAATTTACATATAAATAGTCCTAGTTCTACAATT
1681 TGTTATTTTTTTAATTATTATTTTTTATCGTCATTGTGAAGTTGTCCAGGGACTTTAAAGTCCATGTTCCTTTGTGGTGA
1761 AATAACCTCCAAATAGTTTGAGAAGTTGCCAAGACGAAGAAAAAAGCAAAACCCCAGTAGCAGAGCATGGATTCTGTGTT
1841 GTTTCCCATTCTGTCTTTGACTGCCTCATTCAATAAATAGTTAAAAATGTGGCAACAGGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaGGUGACGAUGUUGGAGGGUCu 5'
            |: || || |  |||||||| 
Target 5' agCTCCTCCTCCCTCCTCCCAGc 3'
1446 - 1468 161.00 -18.80
2
miRNA  3' aaGGUGACGAUGUUGGAGGGUCu 5'
            |||  |||   :|||||||| 
Target 5' caCCAAAGCT---GCCTCCCAGt 3'
559 - 578 158.00 -23.40
3
miRNA  3' aaGGU-GACGAUGUUGGAGGGUCu 5'
            ||| || || |  |:|||||| 
Target 5' tcCCATCTCCT-CTCCTTCCCAGg 3'
764 - 786 144.00 -19.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30474491 18 COSMIC
COSN31585029 47 COSMIC
COSN31559782 54 COSMIC
COSN17181620 55 COSMIC
COSN31563446 68 COSMIC
COSN30153501 78 COSMIC
COSN9828826 92 COSMIC
COSN20057663 129 COSMIC
COSN20070174 129 COSMIC
COSN20076159 130 COSMIC
COSN31536035 133 COSMIC
COSN30171341 166 COSMIC
COSN18719204 175 COSMIC
COSN31535844 260 COSMIC
COSN30538466 381 COSMIC
COSN2201225 484 COSMIC
COSN31533030 573 COSMIC
COSN9828827 611 COSMIC
COSN26638781 676 COSMIC
COSN30164328 760 COSMIC
COSN31530849 768 COSMIC
COSN26638782 831 COSMIC
COSN31538476 872 COSMIC
COSN31576039 937 COSMIC
COSN9922865 1287 COSMIC
COSN20091692 1294 COSMIC
COSN7959791 1338 COSMIC
COSN29354221 1443 COSMIC
COSN31529508 1514 COSMIC
COSN31608358 1627 COSMIC
COSN25781502 1629 COSMIC
COSN31602620 1789 COSMIC
COSN30173238 1800 COSMIC
COSN31521377 1820 COSMIC
COSN26564687 1864 COSMIC
rs11557288 1154 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs561516450 2 dbSNP
rs1283849481 6 dbSNP
rs548630950 16 dbSNP
rs774071452 17 dbSNP
rs1216153912 18 dbSNP
rs1258629731 23 dbSNP
rs374795819 24 dbSNP
rs772239945 26 dbSNP
rs773271929 28 dbSNP
rs367693210 31 dbSNP
rs1327929816 42 dbSNP
rs760861466 47 dbSNP
rs770904055 51 dbSNP
rs769964528 52 dbSNP
rs1173344439 53 dbSNP
rs1053093976 54 dbSNP
rs45578637 55 dbSNP
rs1169908885 61 dbSNP
rs1158654503 70 dbSNP
rs997274572 75 dbSNP
rs1428709544 76 dbSNP
rs1030108137 90 dbSNP
rs576793370 91 dbSNP
rs953259407 92 dbSNP
rs1301130893 94 dbSNP
rs1007885936 109 dbSNP
rs1270309842 110 dbSNP
rs1181509628 112 dbSNP
rs1002170139 118 dbSNP
rs906525506 118 dbSNP
rs540622556 129 dbSNP
rs963338518 130 dbSNP
rs1260707826 134 dbSNP
rs1224887380 137 dbSNP
rs1324163175 139 dbSNP
rs971744647 143 dbSNP
rs374338238 144 dbSNP
rs959765649 161 dbSNP
rs992603008 162 dbSNP
rs1337342323 171 dbSNP
rs916062442 174 dbSNP
rs1331076840 175 dbSNP
rs948949694 205 dbSNP
rs1447811428 209 dbSNP
rs1405716374 213 dbSNP
rs574192790 221 dbSNP
rs926229148 222 dbSNP
rs1226228016 225 dbSNP
rs1021112306 227 dbSNP
rs879009425 229 dbSNP
rs1468881771 242 dbSNP
rs1287267415 251 dbSNP
rs1234979281 258 dbSNP
rs1323779252 261 dbSNP
rs141846179 262 dbSNP
rs1460594118 263 dbSNP
rs902286388 266 dbSNP
rs934633031 270 dbSNP
rs768595292 274 dbSNP
rs1204988858 280 dbSNP
rs1323674619 282 dbSNP
rs997944283 282 dbSNP
rs563127571 283 dbSNP
rs1352502034 286 dbSNP
rs1279921116 288 dbSNP
rs1245050376 298 dbSNP
rs1335018202 299 dbSNP
rs1482892926 299 dbSNP
rs953723415 302 dbSNP
rs1359844625 316 dbSNP
rs530584628 317 dbSNP
rs1399474364 321 dbSNP
rs747147881 334 dbSNP
rs1159612835 335 dbSNP
rs1471457421 343 dbSNP
rs1382968838 346 dbSNP
rs1185084302 352 dbSNP
rs1241029648 355 dbSNP
rs1483262651 355 dbSNP
rs1016826243 356 dbSNP
rs1448650020 360 dbSNP
rs1430289434 361 dbSNP
rs1221420469 362 dbSNP
rs1357050141 364 dbSNP
rs962573896 364 dbSNP
rs10580617 366 dbSNP
rs114698645 366 dbSNP
rs1248463170 366 dbSNP
rs1347439761 366 dbSNP
rs138036238 366 dbSNP
rs1416015600 366 dbSNP
rs143325914 366 dbSNP
rs143579598 366 dbSNP
rs398006268 366 dbSNP
rs55725001 366 dbSNP
rs770671807 366 dbSNP
rs149250308 370 dbSNP
rs1424377646 371 dbSNP
rs1049837370 374 dbSNP
rs1174122388 376 dbSNP
rs1165024893 377 dbSNP
rs973001000 378 dbSNP
rs202117034 381 dbSNP
rs1184237016 383 dbSNP
rs1476132577 389 dbSNP
rs568624831 395 dbSNP
rs202032293 396 dbSNP
rs1007398527 413 dbSNP
rs1016553312 415 dbSNP
rs899097328 416 dbSNP
rs1322536841 421 dbSNP
rs564181656 426 dbSNP
rs1025968790 427 dbSNP
rs1364206459 428 dbSNP
rs1284294008 437 dbSNP
rs1055099704 448 dbSNP
rs959735060 456 dbSNP
rs1343952752 458 dbSNP
rs1305333301 460 dbSNP
rs992570673 460 dbSNP
rs1298561465 463 dbSNP
rs532549069 466 dbSNP
rs1353529025 471 dbSNP
rs114187848 472 dbSNP
rs970592593 474 dbSNP
rs1228093269 475 dbSNP
rs1276743769 483 dbSNP
rs1042990655 485 dbSNP
rs1459985976 499 dbSNP
rs1271031739 502 dbSNP
rs1191528955 514 dbSNP
rs1332833495 517 dbSNP
rs902674317 518 dbSNP
rs1232474996 528 dbSNP
rs1202721035 531 dbSNP
rs1320017563 540 dbSNP
rs566222433 541 dbSNP
rs536720503 542 dbSNP
rs1304103208 543 dbSNP
rs1387669879 544 dbSNP
rs1269313830 546 dbSNP
rs1373086322 547 dbSNP
rs1296037074 557 dbSNP
rs1006525000 561 dbSNP
rs1400667658 562 dbSNP
rs1016536378 572 dbSNP
rs1189629933 579 dbSNP
rs962641329 581 dbSNP
rs972667448 587 dbSNP
rs1025946879 589 dbSNP
rs1248165147 595 dbSNP
rs926169403 595 dbSNP
rs1429153641 596 dbSNP
rs971256411 600 dbSNP
rs981656860 601 dbSNP
rs1388907955 615 dbSNP
rs928044829 624 dbSNP
rs934899344 626 dbSNP
rs989045746 630 dbSNP
rs1258237221 632 dbSNP
rs1234623704 634 dbSNP
rs1316635356 635 dbSNP
rs548831803 638 dbSNP
rs1305306993 639 dbSNP
rs1242847262 645 dbSNP
rs752400745 646 dbSNP
rs1448189780 653 dbSNP
rs1304142956 655 dbSNP
rs878935072 670 dbSNP
rs1377150999 671 dbSNP
rs1367770053 673 dbSNP
rs922600751 675 dbSNP
rs934026632 676 dbSNP
rs938061976 680 dbSNP
rs1438205163 684 dbSNP
rs990845510 685 dbSNP
rs1362058749 689 dbSNP
rs1049763333 692 dbSNP
rs1366442124 693 dbSNP
rs915245046 698 dbSNP
rs1440125906 704 dbSNP
rs11760927 710 dbSNP
rs1382336950 711 dbSNP
rs1381109110 714 dbSNP
rs1183249377 722 dbSNP
rs1442800098 724 dbSNP
rs946994895 728 dbSNP
rs11557287 731 dbSNP
rs868103225 734 dbSNP
rs1259537972 753 dbSNP
rs1037530003 754 dbSNP
rs899018571 758 dbSNP
rs1292238922 760 dbSNP
rs537613397 761 dbSNP
rs35049738 762 dbSNP
rs1313854746 764 dbSNP
rs1323245056 765 dbSNP
rs1026270204 785 dbSNP
rs759832672 803 dbSNP
rs559205235 807 dbSNP
rs780042158 821 dbSNP
rs769999987 826 dbSNP
rs577424298 840 dbSNP
rs534662322 841 dbSNP
rs1006593028 843 dbSNP
rs1382664490 845 dbSNP
rs1246400692 849 dbSNP
rs552673839 850 dbSNP
rs1420033989 853 dbSNP
rs574228361 868 dbSNP
rs1190678459 871 dbSNP
rs541541682 872 dbSNP
rs1038034941 873 dbSNP
rs1246252509 893 dbSNP
rs1013931195 897 dbSNP
rs1428032883 897 dbSNP
rs563018892 898 dbSNP
rs969846246 901 dbSNP
rs753676350 902 dbSNP
rs1358011162 904 dbSNP
rs1365926271 904 dbSNP
rs1265713665 918 dbSNP
rs1033162520 925 dbSNP
rs956246467 926 dbSNP
rs575102817 935 dbSNP
rs1002736575 937 dbSNP
rs1406929331 938 dbSNP
rs1393112913 939 dbSNP
rs1164077393 944 dbSNP
rs1403997776 946 dbSNP
rs763483693 952 dbSNP
rs1034168201 955 dbSNP
rs191089608 957 dbSNP
rs764762927 958 dbSNP
rs564448361 960 dbSNP
rs146285024 962 dbSNP
rs1267551532 964 dbSNP
rs1194887380 965 dbSNP
rs1336804265 966 dbSNP
rs1321985800 978 dbSNP
rs1218775350 985 dbSNP
rs147977173 993 dbSNP
rs941438241 994 dbSNP
rs1434324362 995 dbSNP
rs1038901690 996 dbSNP
rs1331490451 1002 dbSNP
rs920419934 1006 dbSNP
rs1391040515 1009 dbSNP
rs924230737 1010 dbSNP
rs934224312 1011 dbSNP
rs929132447 1012 dbSNP
rs80150480 1014 dbSNP
rs575258120 1015 dbSNP
rs1378580749 1027 dbSNP
rs530078684 1035 dbSNP
rs1181628086 1037 dbSNP
rs1435706958 1038 dbSNP
rs1239675958 1047 dbSNP
rs1198694117 1049 dbSNP
rs1381226814 1053 dbSNP
rs1261118933 1055 dbSNP
rs895754249 1057 dbSNP
rs942836660 1058 dbSNP
rs1038087340 1059 dbSNP
rs1013899438 1070 dbSNP
rs1317811265 1070 dbSNP
rs898224718 1070 dbSNP
rs1333663619 1071 dbSNP
rs993860486 1071 dbSNP
rs1044053584 1080 dbSNP
rs879907826 1081 dbSNP
rs548721114 1095 dbSNP
rs907139790 1105 dbSNP
rs1403616941 1113 dbSNP
rs1003202350 1129 dbSNP
rs57720104 1131 dbSNP
rs958537639 1144 dbSNP
rs745374409 1147 dbSNP
rs1239763793 1149 dbSNP
rs11557288 1154 dbSNP
rs1211698509 1155 dbSNP
rs1033207402 1163 dbSNP
rs956171883 1164 dbSNP
rs1010360285 1165 dbSNP
rs141644782 1166 dbSNP
rs955611201 1174 dbSNP
rs571153290 1191 dbSNP
rs1307157175 1192 dbSNP
rs1196782245 1204 dbSNP
rs955683238 1217 dbSNP
rs987020591 1223 dbSNP
rs986142730 1231 dbSNP
rs80344027 1232 dbSNP
rs1336783450 1236 dbSNP
rs1360894688 1245 dbSNP
rs1038471118 1252 dbSNP
rs1423598876 1254 dbSNP
rs182642976 1255 dbSNP
rs919713159 1258 dbSNP
rs1009876053 1267 dbSNP
rs750008492 1274 dbSNP
rs1472863188 1276 dbSNP
rs1241407675 1277 dbSNP
rs1191446221 1278 dbSNP
rs1489110695 1282 dbSNP
rs755814438 1283 dbSNP
rs974151690 1284 dbSNP
rs537483999 1294 dbSNP
rs929101417 1295 dbSNP
rs1373735607 1297 dbSNP
rs768737866 1299 dbSNP
rs1230484216 1304 dbSNP
rs1270063540 1309 dbSNP
rs1398704576 1314 dbSNP
rs1055724747 1318 dbSNP
rs13241028 1322 dbSNP
rs556649681 1323 dbSNP
rs949978572 1327 dbSNP
rs1166514508 1328 dbSNP
rs1044745938 1335 dbSNP
rs530886427 1336 dbSNP
rs754907844 1347 dbSNP
rs1167997995 1348 dbSNP
rs1209948295 1352 dbSNP
rs1000009633 1353 dbSNP
rs1054091633 1357 dbSNP
rs1198378553 1365 dbSNP
rs778869257 1366 dbSNP
rs546026704 1370 dbSNP
rs1031050996 1371 dbSNP
rs1224060186 1382 dbSNP
rs955558308 1389 dbSNP
rs1257504468 1393 dbSNP
rs1180444796 1398 dbSNP
rs891563329 1402 dbSNP
rs1279432940 1405 dbSNP
rs557645333 1408 dbSNP
rs1223240329 1417 dbSNP
rs986739137 1424 dbSNP
rs1436743443 1440 dbSNP
rs1353618840 1443 dbSNP
rs1328659144 1457 dbSNP
rs1010330499 1458 dbSNP
rs1409362818 1459 dbSNP
rs1466767367 1467 dbSNP
rs1472060232 1469 dbSNP
rs1424198862 1470 dbSNP
rs1175640162 1471 dbSNP
rs1431172066 1474 dbSNP
rs542082787 1476 dbSNP
rs1029768801 1477 dbSNP
rs1403651128 1478 dbSNP
rs1237858091 1483 dbSNP
rs1196795575 1492 dbSNP
rs1412694890 1498 dbSNP
rs974232856 1502 dbSNP
rs1233176582 1505 dbSNP
rs867236745 1512 dbSNP
rs1311025788 1514 dbSNP
rs117268498 1515 dbSNP
rs1220224425 1520 dbSNP
rs929778051 1522 dbSNP
rs757287521 1529 dbSNP
rs1306667879 1534 dbSNP
rs540169569 1535 dbSNP
rs928366025 1545 dbSNP
rs938347962 1567 dbSNP
rs572268349 1568 dbSNP
rs1305948893 1572 dbSNP
rs1360885622 1576 dbSNP
rs962703786 1579 dbSNP
rs1224292608 1586 dbSNP
rs1379876884 1593 dbSNP
rs1418329098 1593 dbSNP
rs781354757 1597 dbSNP
rs111364957 1600 dbSNP
rs1238871913 1600 dbSNP
rs1042934650 1606 dbSNP
rs1342913165 1610 dbSNP
rs1482549614 1611 dbSNP
rs1258329416 1612 dbSNP
rs1211211579 1618 dbSNP
rs1025706912 1624 dbSNP
rs746016357 1627 dbSNP
rs998660461 1628 dbSNP
rs1031521617 1630 dbSNP
rs1203540427 1632 dbSNP
rs1311379340 1635 dbSNP
rs1393845432 1636 dbSNP
rs1381219371 1637 dbSNP
rs891180453 1655 dbSNP
rs992266743 1656 dbSNP
rs1358406414 1660 dbSNP
rs1157011544 1663 dbSNP
rs917084521 1666 dbSNP
rs1421739417 1677 dbSNP
rs1381203069 1680 dbSNP
rs1186890064 1682 dbSNP
rs1008210052 1686 dbSNP
rs1258809125 1691 dbSNP
rs1482533561 1693 dbSNP
rs751010509 1694 dbSNP
rs1488127829 1695 dbSNP
rs1284312610 1696 dbSNP
rs1219329176 1702 dbSNP
rs561935131 1708 dbSNP
rs139498398 1710 dbSNP
rs144317536 1711 dbSNP
rs1171447076 1727 dbSNP
rs935656062 1728 dbSNP
rs1299785523 1731 dbSNP
rs1431536137 1734 dbSNP
rs546301861 1737 dbSNP
rs951635705 1750 dbSNP
rs982949636 1755 dbSNP
rs1369643956 1758 dbSNP
rs928387843 1774 dbSNP
rs938400130 1777 dbSNP
rs1370272568 1779 dbSNP
rs1165649428 1782 dbSNP
rs1477771082 1783 dbSNP
rs1329542445 1797 dbSNP
rs1196264574 1798 dbSNP
rs1488840848 1800 dbSNP
rs1266172400 1805 dbSNP
rs1207716099 1826 dbSNP
rs1435899678 1828 dbSNP
rs1489137187 1836 dbSNP
rs991177414 1855 dbSNP
rs915578296 1863 dbSNP
rs1226767210 1868 dbSNP
rs1274379350 1869 dbSNP
rs1218960727 1872 dbSNP
rs947001798 1873 dbSNP
rs1043369128 1874 dbSNP
rs767446620 1875 dbSNP
rs750296322 1876 dbSNP
rs1211976967 1878 dbSNP
rs1326640528 1882 dbSNP
rs564106620 1883 dbSNP
rs1269068773 1884 dbSNP
rs1054061030 1887 dbSNP
rs891487944 1890 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4899.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aagguGACGAUGUUGGAGGGUCu 5'
               || || |  |||||||| 
Target 5' ---ucCUCCUCCCUCCUCCCAG- 3'
1 - 19
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000393230.2 | 3UTR | UCCUCCUCCCUCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000393230.2 | 3UTR | UCCUCCUCCCUCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
HNSC -0.534 0.32 -0.500 0.33 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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