pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol HSPA13   
Synonyms STCH
Description heat shock protein family A (Hsp70) member 13
Transcript NM_006948   
Expression
Putative miRNA Targets on HSPA13
3'UTR of HSPA13
(miRNA target sites are highlighted)
>HSPA13|NM_006948|3'UTR
   1 ATTCTGCAGAAATAATGGTTATTTGTGAACTTGTCTGATGATCTCTTCCCATTTATCAGATTACCTTTTCCACAAAAGAA
  81 AGTCTCTAAAATATCACAGATTTACCTAGAGGGCAACATTTAGATACAGGAAAATTTTACATAGTGTTTTGTCTTAGGAT
 161 TAGACGTGACCAGATTGATCCTGTTTGATTTTGGAGAGATCCTATTCTAACAAATACTCTAAAATGATAAAATTGAGGTA
 241 CAACTCTCTTAAAAGAGTATGGATAACTATATTTTCTGGATTCTGGAGGTTGATAACCATATGCACTTAACATTATATTC
 321 TATAAACATTAAGTAGTGCCAGTTATGAGATTCCCAGTTCTTACTAAATTGTATTAGCAGGAGCTGGTAATTACTTGTAT
 401 TATCACATGTAACTAATAATTTGAACTATACTTGAAGGACCGTGTTGATGTCAGGTATTTACAGTGGTTGGAAGATAGCA
 481 GTATTATTAGCATAAGCTGCATACGTAATATTCAGTAACTGCCATATTATATAACAAATTTACATTCACAAATTCAGTAT
 561 CCTGTTAAGTGTCATATTCTTGTAATCTGCATTCTCCAGGAGTTTTATGTGTTTAATAGATGAATTTATTTTATTTCTAA
 641 AGGTATTCAAATGTTTCAGCACCATATAATAGAAATACCCAATTATATTCTAGTTCCTTTATGTCCTGTACATCATTCTC
 721 TGCTTGGATTTCCATTATTCTGTTTGGTTAGAGAATAAAATTGGTAATTGCATTTGAAGAATGTGTTAATGTCATAATAA
 801 AGCCATGATTGCTATCTTATTTTTGTTATCCGAGACCTTTGCAAACATTGGCAAATAGCATCAATTACCTACTGTATTTG
 881 TTTCTTTGTTTATATTTTCAGTAAGCCCTGGGGAATATAGCATGGAATTGAGCTACTAAATGGTTTTGGTTCCGTTTTAC
 961 GGAGATTTTTCCTCATATTTAGTTTTGAATGAGGAAAATGTGCTCAATTATAAAAGCTGTGTTATTGTTTTCTATTATTA
1041 TTTTTAAATAATCACACTTGGACTCTTTTCAAACATTAGGTTAGTTTGTAATGAAAGCAAAAAATTTGTGAATACTGGAA
1121 GTAACGTGGAAATCTAATGTGGAAGCCATTGTGGCAAGGTTTCTACAAATCGGCATTTGGAGCAGAGTTGTTTGTTTTTG
1201 TTGTTTGTTTCCTTTAAGAAAAACCACAGGGACCAAGAAAGAAAATATAACAGTTTGATTTCTGTCATACCCATTGTATT
1281 TGAAGATATATGGATACAGATTATATATATATATACATATTTTCCTTAATAGAGGAATGCTTCATATTATTCAAAAATTA
1361 TATCCTGATCACCTTTTTTTGTTTTTTATTGTAAAGTATCTCTGCTTTATCCATTGCTGAATTCGATAGGATGTTGAAAT
1441 GCTGGTCACCAAAAAAGGAAACTGAGCAAATTCATTTCAACAACATCAAAACTTCAGCTTCTCATAGTAAAAAGCTGAAT
1521 GTTACTAATATTTTTCATATCTAAAAAAAAATTCTTAGCAATGAAATTGCTGTTAAAACACAAATTTCAATCAAATACTT
1601 TTGTGTATAGAAAATATGTATAGTAGGTAGATAGAAAAGTATAAAATGTTTGTTGAAGTATCTTATTTTAGAATGAATGG
1681 AGAAATGCCAAAGATGAATCCTTCACTGCATTATGAAAATATTTCACATGTTCTCTTGGACTTTATATAAATCTGTAATA
1761 GATTTTAGAATTGAAAAATTCTTTGTGAAGGTCTTCTAAAAGTGTTCCAATTTATCTCAAAATCTCCATATATAGGATCA
1841 GCTTAAAACATAAAGAAAACCTTGAATTTCTCAAATGTTTGAGATGTTCAAGACAGTCTCTTAATCCGTTAATGCTTTTG
1921 GAAACAATTGACAAAATAGGGCAGGCAGCTCATCTCATGTCCTGAAGTTGGAATTTAAATAATTCCTATTTGCAAATTAG
2001 AATGACAGTGTTGGAATTTGGAGGCAGTAGTTGAGCATATTCTCTAGTATATAGCTACACCTTTAATAAAATGAAGGAAT
2081 GTCTTCAATCATATTTTAGTGGGCTATTTATAAATAGTCTTGAAGTCAATTTAGTTTATTTATTTAAAAGATAATGCATC
2161 CTGAAAGGGATCATTTATGAATAACAATCTGAAGTCTTTTCATAAAAAAAATTAATAAACTTTAGTTGTACATTTAGCCA
2241 GTGTTATTTGAAGTATGTAACTTTTAAAATATTAAGTGTCTTGTATGATTAGAATATGTGAATGAGTAACTTATTTTGTA
2321 TCAGGAATGTTTTGGTACTGTGTTTTCACTCAAACCACTGACTTAACAGATACTGCTGTGTATAACATGTACTAAATATT
2401 ACAGTTATTGTGCATAACAGATTGTTCCTCTTATATTTGTGTGTATACAGGCAATTCATGTTTTAATGTAAATAAATACC
2481 ATTTTGCAGTTTGTTTTTTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuUA-GUGU-UUACAGGAAUUAUc 5'
            || :||| | | ||||||||| 
Target 5' atATATACATATTTTCCTTAATAg 3'
1309 - 1332 164.00 -14.30
2
miRNA  3' cuuaguguuUACAGGAAUUAUc 5'
                   |||| :|||||| 
Target 5' aggagttttATGTGTTTAATAg 3'
598 - 619 141.00 -14.00
3
miRNA  3' cuuAGUGUUUACAG-GAAUUAuc 5'
             ||| :|  ||| ||||||  
Target 5' tgtTCAAGACAGTCTCTTAATcc 3'
1885 - 1907 139.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30104057 16 COSMIC
COSN30454074 18 COSMIC
COSN31571099 118 COSMIC
COSN20116717 249 COSMIC
COSN18862550 440 COSMIC
COSN31961894 442 COSMIC
COSN28201149 1243 COSMIC
COSN27194207 1302 COSMIC
COSN18842802 1324 COSMIC
COSN1882060 1362 COSMIC
COSN18842801 1365 COSMIC
COSN15661666 1495 COSMIC
COSN5448517 1532 COSMIC
COSN5448516 1577 COSMIC
COSN31584575 1598 COSMIC
COSN28772023 1601 COSMIC
COSN30157851 1655 COSMIC
COSN31521989 1707 COSMIC
COSN31523434 1712 COSMIC
COSN15839009 1753 COSMIC
COSN5978777 1757 COSMIC
COSN31607000 1758 COSMIC
COSN31608236 1761 COSMIC
COSN22403520 1788 COSMIC
COSN51089 1907 COSMIC
COSN15800647 2124 COSMIC
COSN31596535 2217 COSMIC
COSN31611139 2381 COSMIC
COSN22879105 2383 COSMIC
COSN26555521 2449 COSMIC
COSN31592839 2461 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1218053455 6 dbSNP
rs1465367140 15 dbSNP
rs761183606 17 dbSNP
rs1202909778 18 dbSNP
rs1208002243 29 dbSNP
rs1027418830 30 dbSNP
rs1326878963 33 dbSNP
rs1413580503 34 dbSNP
rs767057038 35 dbSNP
rs370581104 37 dbSNP
rs1219516332 41 dbSNP
rs897275374 42 dbSNP
rs772093073 44 dbSNP
rs1272660105 47 dbSNP
rs17002670 48 dbSNP
rs965329490 51 dbSNP
rs1008391597 53 dbSNP
rs1425456299 65 dbSNP
rs545198978 69 dbSNP
rs531442648 74 dbSNP
rs1238350942 88 dbSNP
rs1372726616 99 dbSNP
rs936935107 112 dbSNP
rs1333649222 114 dbSNP
rs1018484308 116 dbSNP
rs1404112428 117 dbSNP
rs751119172 118 dbSNP
rs1452071166 120 dbSNP
rs763816483 126 dbSNP
rs762587806 127 dbSNP
rs562419509 128 dbSNP
rs925532940 128 dbSNP
rs542546979 141 dbSNP
rs1387921973 145 dbSNP
rs1043137265 156 dbSNP
rs1259616448 158 dbSNP
rs192519852 160 dbSNP
rs1420226151 161 dbSNP
rs561354804 166 dbSNP
rs550489760 168 dbSNP
rs1418651023 173 dbSNP
rs541117740 183 dbSNP
rs1172521361 188 dbSNP
rs1010176927 191 dbSNP
rs992573928 196 dbSNP
rs1337535196 198 dbSNP
rs959738261 204 dbSNP
rs927126611 213 dbSNP
rs891776013 214 dbSNP
rs952761891 215 dbSNP
rs1379622216 218 dbSNP
rs1057073734 225 dbSNP
rs1321061554 235 dbSNP
rs187837678 243 dbSNP
rs558821556 244 dbSNP
rs1278801476 246 dbSNP
rs145655033 251 dbSNP
rs539235679 251 dbSNP
rs1212972252 255 dbSNP
rs1241491602 258 dbSNP
rs906118049 269 dbSNP
rs1219527895 271 dbSNP
rs185699289 276 dbSNP
rs942241392 289 dbSNP
rs1266491237 290 dbSNP
rs1479954047 294 dbSNP
rs1177428503 299 dbSNP
rs1294627109 305 dbSNP
rs1427480806 309 dbSNP
rs1399051801 312 dbSNP
rs889850361 316 dbSNP
rs1346352483 318 dbSNP
rs556881799 320 dbSNP
rs1001020582 322 dbSNP
rs1405887579 329 dbSNP
rs1275092835 337 dbSNP
rs1346654030 339 dbSNP
rs1347513521 340 dbSNP
rs530713117 345 dbSNP
rs759595181 346 dbSNP
rs1354394521 348 dbSNP
rs1218721941 354 dbSNP
rs1289420558 357 dbSNP
rs945733537 360 dbSNP
rs983848084 378 dbSNP
rs1468772698 380 dbSNP
rs1297081451 383 dbSNP
rs1408793958 387 dbSNP
rs912903710 392 dbSNP
rs1162254450 397 dbSNP
rs929724829 405 dbSNP
rs1425736812 407 dbSNP
rs918220334 409 dbSNP
rs1325901595 410 dbSNP
rs1339764404 423 dbSNP
rs938424773 428 dbSNP
rs564581160 429 dbSNP
rs976416210 441 dbSNP
rs193223138 442 dbSNP
rs1241635313 449 dbSNP
rs1289534697 457 dbSNP
rs1018223929 459 dbSNP
rs980371784 478 dbSNP
rs1291762451 491 dbSNP
rs1402620221 496 dbSNP
rs771088681 499 dbSNP
rs1441647165 503 dbSNP
rs567243382 504 dbSNP
rs547373433 505 dbSNP
rs1195934601 513 dbSNP
rs1445756636 513 dbSNP
rs747126035 519 dbSNP
rs1010248781 521 dbSNP
rs1409681488 524 dbSNP
rs533611390 526 dbSNP
rs147050202 528 dbSNP
rs972629376 533 dbSNP
rs1312243201 535 dbSNP
rs1382031169 537 dbSNP
rs1035616654 538 dbSNP
rs1245416578 540 dbSNP
rs17208186 548 dbSNP
rs1337211924 554 dbSNP
rs1213719635 562 dbSNP
rs546274103 563 dbSNP
rs141696285 567 dbSNP
rs1389761530 571 dbSNP
rs1459231656 574 dbSNP
rs1201920466 582 dbSNP
rs1242595009 582 dbSNP
rs1443016968 584 dbSNP
rs1044674885 587 dbSNP
rs1279777137 590 dbSNP
rs1190226153 600 dbSNP
rs986742325 602 dbSNP
rs1199579749 603 dbSNP
rs1475305858 611 dbSNP
rs1168832047 618 dbSNP
rs1423947088 622 dbSNP
rs1466860329 637 dbSNP
rs954291979 642 dbSNP
rs528039998 643 dbSNP
rs1404745011 650 dbSNP
rs1342455535 657 dbSNP
rs1259516438 660 dbSNP
rs942294992 664 dbSNP
rs1218743449 668 dbSNP
rs12479 669 dbSNP
rs1001474415 677 dbSNP
rs1226472911 678 dbSNP
rs1047930187 679 dbSNP
rs929670774 683 dbSNP
rs564095747 687 dbSNP
rs1416518276 692 dbSNP
rs1221923509 695 dbSNP
rs1021093588 697 dbSNP
rs1345842915 703 dbSNP
rs976406438 712 dbSNP
rs1009831502 714 dbSNP
rs1446900688 716 dbSNP
rs1333254696 724 dbSNP
rs1194932120 740 dbSNP
rs62229676 742 dbSNP
rs896710795 746 dbSNP
rs1479630276 750 dbSNP
rs1173823062 754 dbSNP
rs2822639 762 dbSNP
rs561083596 763 dbSNP
rs1173786317 772 dbSNP
rs1382779418 778 dbSNP
rs938347548 782 dbSNP
rs1298670782 810 dbSNP
rs1342146663 811 dbSNP
rs541404732 812 dbSNP
rs1466246856 814 dbSNP
rs572392619 815 dbSNP
rs7275514 816 dbSNP
rs969056251 817 dbSNP
rs1331879023 819 dbSNP
rs1474057774 822 dbSNP
rs931019118 825 dbSNP
rs1259035795 831 dbSNP
rs2822638 832 dbSNP
rs972514392 833 dbSNP
rs988607777 846 dbSNP
rs1187301398 847 dbSNP
rs1199092971 848 dbSNP
rs751081569 851 dbSNP
rs1441000915 853 dbSNP
rs1433402562 860 dbSNP
rs939961365 862 dbSNP
rs912459295 863 dbSNP
rs986789935 864 dbSNP
rs1159212123 867 dbSNP
rs75289380 869 dbSNP
rs1422567260 880 dbSNP
rs1035771413 892 dbSNP
rs1368657510 913 dbSNP
rs1388729412 918 dbSNP
rs535069843 923 dbSNP
rs536901868 927 dbSNP
rs1305066043 928 dbSNP
rs1335255475 934 dbSNP
rs1456968117 935 dbSNP
rs970060018 942 dbSNP
rs1028864404 948 dbSNP
rs868448306 953 dbSNP
rs773095260 954 dbSNP
rs574286271 960 dbSNP
rs1006440080 961 dbSNP
rs1247930514 964 dbSNP
rs1242386374 972 dbSNP
rs1438562849 973 dbSNP
rs888030074 974 dbSNP
rs1382142349 975 dbSNP
rs1047920304 985 dbSNP
rs1163884061 999 dbSNP
rs1459193417 1007 dbSNP
rs1333677814 1017 dbSNP
rs968503393 1020 dbSNP
rs1399775314 1030 dbSNP
rs1447679867 1034 dbSNP
rs1447780865 1037 dbSNP
rs1381294136 1043 dbSNP
rs1245897714 1045 dbSNP
rs572646609 1048 dbSNP
rs1329403124 1051 dbSNP
rs1407098831 1052 dbSNP
rs896893636 1061 dbSNP
rs9978693 1062 dbSNP
rs1249306884 1065 dbSNP
rs896769802 1066 dbSNP
rs1040824619 1069 dbSNP
rs1382531308 1070 dbSNP
rs943805789 1075 dbSNP
rs1198800333 1078 dbSNP
rs78283728 1079 dbSNP
rs1457036916 1081 dbSNP
rs1459546286 1104 dbSNP
rs1181214216 1105 dbSNP
rs1002993100 1106 dbSNP
rs905531373 1109 dbSNP
rs1168036509 1118 dbSNP
rs1423262046 1125 dbSNP
rs187422579 1126 dbSNP
rs947285897 1132 dbSNP
rs1404002924 1134 dbSNP
rs1447335346 1138 dbSNP
rs1303953276 1139 dbSNP
rs1381942955 1140 dbSNP
rs1380924724 1154 dbSNP
rs1223140444 1157 dbSNP
rs1277960581 1158 dbSNP
rs1316984174 1166 dbSNP
rs11088017 1171 dbSNP
rs776654209 1172 dbSNP
rs1289114091 1173 dbSNP
rs955894824 1175 dbSNP
rs931091984 1183 dbSNP
rs928488865 1187 dbSNP
rs1208760313 1188 dbSNP
rs1484179120 1198 dbSNP
rs898229367 1198 dbSNP
rs1184619130 1199 dbSNP
rs1355664974 1199 dbSNP
rs1477985587 1203 dbSNP
rs1173128981 1211 dbSNP
rs1309711296 1211 dbSNP
rs182736438 1218 dbSNP
rs1414024649 1229 dbSNP
rs939841860 1230 dbSNP
rs912512038 1231 dbSNP
rs1239079161 1232 dbSNP
rs1298063849 1249 dbSNP
rs986730726 1249 dbSNP
rs1402195299 1251 dbSNP
rs1279725464 1253 dbSNP
rs1365027830 1257 dbSNP
rs1376456626 1258 dbSNP
rs932520058 1272 dbSNP
rs1278713667 1274 dbSNP
rs1313377729 1276 dbSNP
rs1214362625 1292 dbSNP
rs1285167546 1292 dbSNP
rs1163437862 1294 dbSNP
rs981520565 1298 dbSNP
rs1195543804 1299 dbSNP
rs979811628 1303 dbSNP
rs1477819783 1304 dbSNP
rs968178651 1308 dbSNP
rs1438741073 1311 dbSNP
rs1350509995 1312 dbSNP
rs1323535453 1314 dbSNP
rs1361681973 1316 dbSNP
rs768606323 1316 dbSNP
rs1347831372 1320 dbSNP
rs1435320568 1325 dbSNP
rs1275002348 1330 dbSNP
rs1369140770 1335 dbSNP
rs1423274978 1336 dbSNP
rs190109382 1337 dbSNP
rs568663057 1340 dbSNP
rs17306192 1344 dbSNP
rs529090601 1367 dbSNP
rs1287452077 1374 dbSNP
rs560389701 1379 dbSNP
rs1248633792 1381 dbSNP
rs544626988 1381 dbSNP
rs995564951 1388 dbSNP
rs546609775 1391 dbSNP
rs993648563 1396 dbSNP
rs898276936 1398 dbSNP
rs1162132009 1399 dbSNP
rs773403137 1400 dbSNP
rs17002662 1408 dbSNP
rs369996560 1424 dbSNP
rs1323830260 1425 dbSNP
rs1196754918 1431 dbSNP
rs1443983250 1431 dbSNP
rs889536215 1433 dbSNP
rs1049403871 1438 dbSNP
rs1302341429 1439 dbSNP
rs947089053 1441 dbSNP
rs1242242939 1442 dbSNP
rs568650194 1443 dbSNP
rs890959305 1449 dbSNP
rs548650187 1473 dbSNP
rs914478287 1478 dbSNP
rs1228625788 1485 dbSNP
rs1286578556 1487 dbSNP
rs545492907 1497 dbSNP
rs1292353589 1503 dbSNP
rs1215658189 1504 dbSNP
rs1198167394 1508 dbSNP
rs1351182193 1509 dbSNP
rs932598426 1511 dbSNP
rs774590257 1515 dbSNP
rs768957000 1516 dbSNP
rs187180905 1518 dbSNP
rs1165330296 1519 dbSNP
rs1415595712 1527 dbSNP
rs1463721930 1530 dbSNP
rs1274328255 1537 dbSNP
rs928436743 1540 dbSNP
rs572373580 1542 dbSNP
rs1448301061 1545 dbSNP
rs981684726 1548 dbSNP
rs3178188 1549 dbSNP
rs1285730305 1552 dbSNP
rs1316360197 1552 dbSNP
rs543234738 1554 dbSNP
rs984793619 1555 dbSNP
rs952047783 1558 dbSNP
rs746252966 1560 dbSNP
rs1256116969 1563 dbSNP
rs1443493682 1565 dbSNP
rs1414680363 1566 dbSNP
rs183232028 1569 dbSNP
rs1261497287 1585 dbSNP
rs1477662035 1590 dbSNP
rs1192526004 1592 dbSNP
rs972282590 1599 dbSNP
rs928169727 1601 dbSNP
rs966293937 1602 dbSNP
rs1466778483 1605 dbSNP
rs969692451 1607 dbSNP
rs866836668 1618 dbSNP
rs1263855547 1620 dbSNP
rs1008181580 1630 dbSNP
rs1487213834 1632 dbSNP
rs1338179969 1637 dbSNP
rs1399109331 1649 dbSNP
rs1279131601 1652 dbSNP
rs1238972329 1658 dbSNP
rs780468829 1660 dbSNP
rs1255474284 1666 dbSNP
rs554430028 1670 dbSNP
rs1202710463 1671 dbSNP
rs756709482 1676 dbSNP
rs962348565 1678 dbSNP
rs540585763 1681 dbSNP
rs532633586 1683 dbSNP
rs1015172852 1698 dbSNP
rs1196207184 1730 dbSNP
rs1429927090 1730 dbSNP
rs1376592069 1732 dbSNP
rs577537129 1734 dbSNP
rs1478033785 1737 dbSNP
rs1320061562 1747 dbSNP
rs557334163 1748 dbSNP
rs1358519134 1749 dbSNP
rs1003924266 1750 dbSNP
rs892774037 1755 dbSNP
rs1362752888 1758 dbSNP
rs1385323080 1771 dbSNP
rs1300767034 1779 dbSNP
rs1052727060 1781 dbSNP
rs1235453823 1791 dbSNP
rs890846842 1794 dbSNP
rs1279445797 1798 dbSNP
rs1217895901 1806 dbSNP
rs934539977 1810 dbSNP
rs1487679006 1820 dbSNP
rs1207709828 1824 dbSNP
rs537504995 1830 dbSNP
rs1451721897 1831 dbSNP
rs907151047 1834 dbSNP
rs1378472804 1837 dbSNP
rs1360400688 1853 dbSNP
rs746486986 1868 dbSNP
rs899782418 1870 dbSNP
rs1456161541 1874 dbSNP
rs948587150 1879 dbSNP
rs559744748 1881 dbSNP
rs759816437 1882 dbSNP
rs1329393956 1889 dbSNP
rs555086172 1893 dbSNP
rs117423707 1894 dbSNP
rs930729530 1895 dbSNP
rs1241527587 1896 dbSNP
rs1312018418 1896 dbSNP
rs1320330499 1897 dbSNP
rs1244484385 1900 dbSNP
rs1052408199 1905 dbSNP
rs919227878 1907 dbSNP
rs1466768643 1908 dbSNP
rs939436373 1913 dbSNP
rs1456880862 1914 dbSNP
rs928022570 1921 dbSNP
rs972063958 1935 dbSNP
rs1169948607 1946 dbSNP
rs1163771720 1951 dbSNP
rs535923217 1952 dbSNP
rs1463200145 1959 dbSNP
rs1168725880 1961 dbSNP
rs546842356 1968 dbSNP
rs1399652459 1989 dbSNP
rs533099337 2024 dbSNP
rs1300466672 2028 dbSNP
rs1377577201 2049 dbSNP
rs1395875176 2057 dbSNP
rs1313863373 2058 dbSNP
rs1323817974 2060 dbSNP
rs1410505398 2064 dbSNP
rs1234751755 2076 dbSNP
rs1255717271 2078 dbSNP
rs1019648599 2084 dbSNP
rs948209045 2085 dbSNP
rs1415786178 2090 dbSNP
rs571572004 2097 dbSNP
rs1182244624 2101 dbSNP
rs953697982 2102 dbSNP
rs1022473197 2120 dbSNP
rs973626216 2129 dbSNP
rs1423129385 2134 dbSNP
rs372731738 2135 dbSNP
rs1172610463 2138 dbSNP
rs1237146795 2150 dbSNP
rs1011246675 2154 dbSNP
rs551810227 2157 dbSNP
rs982389297 2169 dbSNP
rs955148216 2170 dbSNP
rs1029812691 2172 dbSNP
rs1398499976 2174 dbSNP
rs996731157 2180 dbSNP
rs1258793023 2185 dbSNP
rs532474516 2192 dbSNP
rs764996393 2195 dbSNP
rs1031295532 2196 dbSNP
rs1309860422 2198 dbSNP
rs899667500 2201 dbSNP
rs1218021715 2202 dbSNP
rs1022095519 2203 dbSNP
rs998509621 2210 dbSNP
rs1010842442 2212 dbSNP
rs1478270401 2212 dbSNP
rs560631453 2212 dbSNP
rs1306284314 2219 dbSNP
rs1432620778 2224 dbSNP
rs907103770 2225 dbSNP
rs531780905 2232 dbSNP
rs1418307952 2240 dbSNP
rs1046082441 2241 dbSNP
rs1297957840 2255 dbSNP
rs562967607 2258 dbSNP
rs1315383785 2259 dbSNP
rs948682316 2264 dbSNP
rs1431017568 2266 dbSNP
rs894272138 2269 dbSNP
rs1378861989 2273 dbSNP
rs1271512741 2283 dbSNP
rs543171696 2285 dbSNP
rs939323162 2286 dbSNP
rs1448515277 2287 dbSNP
rs930677231 2292 dbSNP
rs919383322 2294 dbSNP
rs972052152 2297 dbSNP
rs1218085985 2298 dbSNP
rs752266562 2304 dbSNP
rs1045551071 2307 dbSNP
rs1349952833 2312 dbSNP
rs948121730 2313 dbSNP
rs1285052904 2314 dbSNP
rs75735747 2337 dbSNP
rs1218243901 2354 dbSNP
rs1245162934 2358 dbSNP
rs1488220702 2361 dbSNP
rs878985426 2367 dbSNP
rs1191822400 2370 dbSNP
rs560541926 2382 dbSNP
rs540874049 2386 dbSNP
rs1397493950 2387 dbSNP
rs771544400 2389 dbSNP
rs986758011 2389 dbSNP
rs1381331081 2391 dbSNP
rs767109138 2393 dbSNP
rs1459970286 2394 dbSNP
rs1319910535 2402 dbSNP
rs1402749692 2402 dbSNP
rs1347719653 2403 dbSNP
rs1370141976 2408 dbSNP
rs1165341297 2422 dbSNP
rs1423064680 2433 dbSNP
rs1444494898 2435 dbSNP
rs570122439 2435 dbSNP
rs1308382896 2438 dbSNP
rs982441738 2445 dbSNP
rs753396191 2447 dbSNP
rs1182054276 2448 dbSNP
rs1321335039 2451 dbSNP
rs915369360 2458 dbSNP
rs754753599 2460 dbSNP
rs989644930 2464 dbSNP
rs957110098 2468 dbSNP
rs577649746 2469 dbSNP
rs754526828 2476 dbSNP
rs955206909 2477 dbSNP
rs753754445 2479 dbSNP
rs998458830 2484 dbSNP
rs971446545 2489 dbSNP
rs1471382400 2494 dbSNP
rs975577076 2500 dbSNP
rs544059015 2503 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6782.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuUA-GUGU-UUACAGGAAUUAUc 5'
            || :||| | | ||||||||| 
Target 5' auAUAUACAUAUUUUCCUUAAUAg 3'
10 - 33
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6782.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuUA-GUGU-UUACAGGAAUuauc 5'
            || :||| | | ||||||    
Target 5' auAUAUACAUAUUUUCCUUA---- 3'
10 - 29
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000285667.3 | 3UTR | AUUAUAUAUAUAUAUACAUAUUUUCCUUAAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000285667.3 | 3UTR | AUUAUAUAUAUAUAUACAUAUUUUCCUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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