pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol E2F1   
Synonyms E2F-1, RBAP1, RBBP3, RBP3
Description E2F transcription factor 1
Transcript NM_005225   
Expression
Putative miRNA Targets on E2F1
3'UTR of E2F1
(miRNA target sites are highlighted)
>E2F1|NM_005225|3'UTR
   1 CAGGGCTTGGAGGGACCAGGGTTTCCAGAGATGCTCACCTTGTCTCTGCAGCCCTGGAGCCCCCTGTCCCTGGCCGTCCT
  81 CCCAGCCTGTTTGGAAACATTTAATTTATACCCCTCTCCTCTGTCTCCAGAAGCTTCTAGCTCTGGGGTCTGGCTACCGC
 161 TAGGAGGCTGAGCAAGCCAGGAAGGGAAGGAGTCTGTGTGGTGTGTATGTGCATGCAGCCTACACCCACACGTGTGTACC
 241 GGGGGTGAATGTGTGTGAGCATGTGTGTGTGCATGTACCGGGGAATGAAGGTGAACATACACCTCTGTGTGTGCACTGCA
 321 GACACGCCCCAGTGTGTCCACATGTGTGTGCATGAGTCCATGTGTGCGCGTGGGGGGGCTCTAACTGCACTTTCGGCCCT
 401 TTTGCTCTGGGGGTCCCACAAGGCCCAGGGCAGTGCCTGCTCCCAGAATCTGGTGCTCTGACCAGGCCAGGTGGGGAGGC
 481 TTTGGCTGGCTGGGCGTGTAGGACGGTGAGAGCACTTCTGTCTTAAAGGTTTTTTCTGATTGAAGCTTTAATGGAGCGTT
 561 ATTTATTTATCGAGGCCTCTTTGGTGAGCCTGGGGAATCAGCAAAGGGGAGGAGGGGTGTGGGGTTGATACCCCAACTCC
 641 CTCTACCCTTGAGCAAGGGCAGGGGTCCCTGAGCTGTTCTTCTGCCCCATACTGAAGGAACTGAGGCCTGGGTGATTTAT
 721 TTATTGGGAAAGTGAGGGAGGGAGACAGACTGACTGACAGCCATGGGTGGTCAGATGGTGGGGTGGGCCCTCTCCAGGGG
 801 GCCAGTTCAGGGCCCCAGCTGCCCCCCAGGATGGATATGAGATGGGAGAGGTGAGTGGGGGACCTTCACTGATGTGGGCA
 881 GGAGGGGTGGTGAAGGCCTCCCCCAGCCCAGACCCTGTGGTCCCTCCTGCAGTGTCTGAAGCGCCTGCCTCCCCACTGCT
 961 CTGCCCCACCCTCCAATCTGCACTTTGATTTGCTTCCTAACAGCTCTGTTCCCTCCTGCTTTGGTTTTAATAAATATTTT
1041 GATGACGTTTGGGCCGGGTTTTGGGACTCTGTTGGGAACATTTCGGGGCGGGAGAGGCCAAGGTTGCTGGGGAAATGCCC
1121 ATTCTCCACTTCCCTTCTCCCTGTCCGTGCCCGATTTGATTTGAGCCTCATAACTCGAAGAAAGGTCAGCTTCCTCGCTG
1201 TTTTGGTCCTAACTCAAAAGCAGATCCAGTAAAGGTTTTTGTTGTAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggccaGGCAUGUUUGAGACGUc 5'
               || |::   ||||||| 
Target 5' gctcaCCTTGT---CTCTGCAg 3'
33 - 51 142.00 -14.00
2
miRNA  3' ggccAGGCAUGUUUGAGACGUc 5'
              ||:||::: :| ||||| 
Target 5' caccTCTGTGTGTGCACTGCAg 3'
300 - 321 130.00 -18.60
3
miRNA  3' ggccAGGCAUGUUUGAGACGuc 5'
              |||  ||  :||||||  
Target 5' tgccTCCCCAC-TGCTCTGCcc 3'
946 - 966 129.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN25880594 42 COSMIC
COSN26647267 44 COSMIC
COSN31489251 128 COSMIC
COSN31538325 157 COSMIC
COSN28201426 177 COSMIC
COSN32099914 190 COSMIC
COSN31593777 256 COSMIC
COSN31578851 261 COSMIC
COSN22682965 369 COSMIC
COSN31594822 371 COSMIC
COSN24307060 427 COSMIC
COSN31536196 430 COSMIC
COSN31593476 437 COSMIC
COSN32168267 458 COSMIC
COSN26585105 468 COSMIC
COSN23835723 493 COSMIC
COSN32168266 576 COSMIC
COSN32168265 682 COSMIC
COSN16625865 697 COSMIC
COSN30165557 907 COSMIC
COSN26576241 940 COSMIC
COSN20989225 988 COSMIC
rs3213180 914 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs3213177 5 dbSNP
rs750410826 6 dbSNP
rs767689297 8 dbSNP
rs3213178 9 dbSNP
rs144921013 11 dbSNP
rs1288141030 12 dbSNP
rs377471842 13 dbSNP
rs763256677 14 dbSNP
rs763187815 16 dbSNP
rs1437603355 17 dbSNP
rs1290191971 19 dbSNP
rs1445557988 20 dbSNP
rs536894303 29 dbSNP
rs1264123832 30 dbSNP
rs775233744 40 dbSNP
rs746377163 42 dbSNP
rs772778710 44 dbSNP
rs938654254 53 dbSNP
rs1385798604 54 dbSNP
rs1288743199 59 dbSNP
rs1456122777 60 dbSNP
rs566253357 63 dbSNP
rs547184326 65 dbSNP
rs746393982 66 dbSNP
rs932094234 66 dbSNP
rs1177598997 67 dbSNP
rs1266683466 71 dbSNP
rs908369916 75 dbSNP
rs532185356 76 dbSNP
rs1376698507 77 dbSNP
rs1412971089 81 dbSNP
rs1472411182 85 dbSNP
rs1158077642 88 dbSNP
rs1040392274 89 dbSNP
rs564748020 92 dbSNP
rs1459344107 93 dbSNP
rs931137356 94 dbSNP
rs1364344167 96 dbSNP
rs919652683 99 dbSNP
rs1309387683 106 dbSNP
rs1350690597 109 dbSNP
rs1222898635 111 dbSNP
rs1305240470 112 dbSNP
rs975204102 113 dbSNP
rs1323908239 114 dbSNP
rs964030268 119 dbSNP
rs1246098838 121 dbSNP
rs935327063 122 dbSNP
rs1490022683 142 dbSNP
rs117423075 147 dbSNP
rs1252692385 155 dbSNP
rs979726143 158 dbSNP
rs968675854 159 dbSNP
rs531190095 161 dbSNP
rs552982460 164 dbSNP
rs1165289963 166 dbSNP
rs991354784 176 dbSNP
rs1463485772 177 dbSNP
rs960482887 179 dbSNP
rs1169910572 182 dbSNP
rs956918980 184 dbSNP
rs1440970583 192 dbSNP
rs1034758112 199 dbSNP
rs1380968623 207 dbSNP
rs1396971065 209 dbSNP
rs1314844900 220 dbSNP
rs1357898479 223 dbSNP
rs961016248 225 dbSNP
rs1016990432 229 dbSNP
rs3746458 231 dbSNP
rs770756895 232 dbSNP
rs1353252359 235 dbSNP
rs1000962550 236 dbSNP
rs1182201963 237 dbSNP
rs1049585632 238 dbSNP
rs572189235 240 dbSNP
rs968198657 241 dbSNP
rs1024125034 258 dbSNP
rs1040417463 258 dbSNP
rs935394222 259 dbSNP
rs1433078545 260 dbSNP
rs1466278928 263 dbSNP
rs902533939 263 dbSNP
rs1012357691 270 dbSNP
rs1336430815 270 dbSNP
rs946989819 273 dbSNP
rs916813396 275 dbSNP
rs11558895 276 dbSNP
rs1052181 277 dbSNP
rs149816386 279 dbSNP
rs541170955 280 dbSNP
rs577240574 296 dbSNP
rs777605474 300 dbSNP
rs1056504955 302 dbSNP
rs1005302496 305 dbSNP
rs886985614 314 dbSNP
rs1047032985 318 dbSNP
rs560344503 325 dbSNP
rs898362293 326 dbSNP
rs370407748 331 dbSNP
rs954027515 344 dbSNP
rs758167957 347 dbSNP
rs1433370349 348 dbSNP
rs1373087801 349 dbSNP
rs1175270929 352 dbSNP
rs1404293123 357 dbSNP
rs1187373191 358 dbSNP
rs1447186917 360 dbSNP
rs1491500982 360 dbSNP
rs1491330717 361 dbSNP
rs1345080688 367 dbSNP
rs942498001 368 dbSNP
rs1184166660 369 dbSNP
rs536394453 372 dbSNP
rs1223058951 373 dbSNP
rs1031436329 374 dbSNP
rs367937087 376 dbSNP
rs1210331928 379 dbSNP
rs1446308711 379 dbSNP
rs999573756 379 dbSNP
rs1213597148 387 dbSNP
rs902556359 389 dbSNP
rs1480486313 390 dbSNP
rs1198137670 392 dbSNP
rs1426765099 393 dbSNP
rs1197703289 395 dbSNP
rs1340313085 396 dbSNP
rs1407744640 399 dbSNP
rs1399419898 408 dbSNP
rs1326112336 409 dbSNP
rs1274265729 412 dbSNP
rs1226250313 414 dbSNP
rs1301421892 418 dbSNP
rs986441653 424 dbSNP
rs1352541313 426 dbSNP
rs374816838 431 dbSNP
rs1229271532 440 dbSNP
rs1279881403 442 dbSNP
rs752506604 444 dbSNP
rs1221948169 445 dbSNP
rs946697614 450 dbSNP
rs895426391 451 dbSNP
rs777206566 460 dbSNP
rs935013889 462 dbSNP
rs1266211484 464 dbSNP
rs190861929 475 dbSNP
rs1055764506 476 dbSNP
rs939562124 484 dbSNP
rs1447973191 493 dbSNP
rs924164663 495 dbSNP
rs1165418139 496 dbSNP
rs979680806 504 dbSNP
rs968170858 509 dbSNP
rs1023846160 510 dbSNP
rs1161701464 511 dbSNP
rs928131541 515 dbSNP
rs972864299 520 dbSNP
rs1410597359 533 dbSNP
rs780183683 540 dbSNP
rs1334264996 555 dbSNP
rs1439749176 557 dbSNP
rs960790648 566 dbSNP
rs1035516673 571 dbSNP
rs1285771993 571 dbSNP
rs576502301 572 dbSNP
rs1288908087 578 dbSNP
rs1427216930 582 dbSNP
rs1195957492 583 dbSNP
rs886452887 588 dbSNP
rs186095470 590 dbSNP
rs756396855 595 dbSNP
rs771359328 605 dbSNP
rs1027965367 617 dbSNP
rs1444524991 619 dbSNP
rs1182293714 624 dbSNP
rs1462551541 631 dbSNP
rs1235728242 632 dbSNP
rs1025554928 633 dbSNP
rs147324820 637 dbSNP
rs1394562928 640 dbSNP
rs536908810 641 dbSNP
rs1183709221 642 dbSNP
rs1383297624 643 dbSNP
rs1451739383 644 dbSNP
rs995460750 647 dbSNP
rs1312845057 648 dbSNP
rs1438235542 649 dbSNP
rs1227510283 665 dbSNP
rs750490421 666 dbSNP
rs1336990930 667 dbSNP
rs767635412 671 dbSNP
rs1264074047 676 dbSNP
rs976649248 679 dbSNP
rs3213179 689 dbSNP
rs1361618728 692 dbSNP
rs1292608584 697 dbSNP
rs942531015 708 dbSNP
rs890854349 710 dbSNP
rs1371427361 726 dbSNP
rs1051298600 733 dbSNP
rs752064755 737 dbSNP
rs181750481 745 dbSNP
rs189032696 746 dbSNP
rs538368231 747 dbSNP
rs1294189642 748 dbSNP
rs1407622921 748 dbSNP
rs1234891094 751 dbSNP
rs1324179592 751 dbSNP
rs1366815095 758 dbSNP
rs1164853186 759 dbSNP
rs895158918 764 dbSNP
rs1055103573 775 dbSNP
rs916828008 779 dbSNP
rs1270470987 784 dbSNP
rs990967662 789 dbSNP
rs1404302955 791 dbSNP
rs1205091755 794 dbSNP
rs961179758 796 dbSNP
rs769327780 800 dbSNP
rs1453410928 803 dbSNP
rs1035083199 812 dbSNP
rs1411509941 815 dbSNP
rs1160272215 816 dbSNP
rs1003808584 840 dbSNP
rs571351189 846 dbSNP
rs549440514 848 dbSNP
rs1428851342 859 dbSNP
rs1479600165 860 dbSNP
rs1472775053 861 dbSNP
rs1173930849 863 dbSNP
rs906746170 864 dbSNP
rs1410992836 868 dbSNP
rs1288234287 869 dbSNP
rs983565510 879 dbSNP
rs1406241721 891 dbSNP
rs1303275965 894 dbSNP
rs764531025 901 dbSNP
rs147293274 903 dbSNP
rs1269955961 904 dbSNP
rs994846387 907 dbSNP
rs898373033 910 dbSNP
rs1250068343 913 dbSNP
rs3213180 914 dbSNP
rs771540812 919 dbSNP
rs1006693496 922 dbSNP
rs1341478370 923 dbSNP
rs1223274545 924 dbSNP
rs1048601126 925 dbSNP
rs932389124 926 dbSNP
rs920935605 928 dbSNP
rs1221558952 931 dbSNP
rs976348221 933 dbSNP
rs552309524 937 dbSNP
rs1050782648 942 dbSNP
rs999271400 943 dbSNP
rs1163613692 956 dbSNP
rs1364441545 965 dbSNP
rs548876497 966 dbSNP
rs1402641329 971 dbSNP
rs1286848963 974 dbSNP
rs1225804735 977 dbSNP
rs902181943 985 dbSNP
rs1299539356 987 dbSNP
rs1043341295 990 dbSNP
rs946388437 997 dbSNP
rs1391170819 998 dbSNP
rs768138130 1002 dbSNP
rs916817427 1006 dbSNP
rs1247387880 1020 dbSNP
rs1435091764 1035 dbSNP
rs1055800789 1040 dbSNP
rs1347647505 1041 dbSNP
rs374135299 1046 dbSNP
rs1021433012 1055 dbSNP
rs1480453230 1056 dbSNP
rs143964465 1058 dbSNP
rs1248179150 1065 dbSNP
rs1011422750 1066 dbSNP
rs1184135164 1071 dbSNP
rs184907289 1071 dbSNP
rs1033685103 1073 dbSNP
rs1003543913 1077 dbSNP
rs1354718344 1079 dbSNP
rs1410869438 1081 dbSNP
rs545154397 1082 dbSNP
rs906818208 1085 dbSNP
rs1037274503 1089 dbSNP
rs1385444324 1089 dbSNP
rs571403469 1100 dbSNP
rs1381308924 1101 dbSNP
rs983526358 1110 dbSNP
rs532967057 1111 dbSNP
rs3213181 1114 dbSNP
rs148012006 1120 dbSNP
rs1296449274 1121 dbSNP
rs543924348 1129 dbSNP
rs973375567 1133 dbSNP
rs1477053008 1134 dbSNP
rs965085931 1140 dbSNP
rs921009857 1143 dbSNP
rs1243931572 1146 dbSNP
rs764974197 1150 dbSNP
rs1018177970 1152 dbSNP
rs576514217 1153 dbSNP
rs1007241903 1161 dbSNP
rs1040718566 1167 dbSNP
rs1205942683 1170 dbSNP
rs1419638448 1171 dbSNP
rs1324769499 1173 dbSNP
rs1427489397 1174 dbSNP
rs943691466 1176 dbSNP
rs759317377 1177 dbSNP
rs924553480 1183 dbSNP
rs554955048 1185 dbSNP
rs1364812552 1197 dbSNP
rs1404513069 1221 dbSNP
rs1271436594 1222 dbSNP
rs1435270118 1236 dbSNP
rs1387803819 1237 dbSNP
rs968637591 1239 dbSNP
rs914399000 1242 dbSNP
rs181206924 1244 dbSNP
rs1029485868 1245 dbSNP
rs1212967191 1248 dbSNP
rs1285416041 1253 dbSNP
rs999323662 1256 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggccaggcauguuugAGACGUc 5'
                         |||||| 
Target 5' ---------------UCUGCAg 3'
1 - 7
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 1869.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000343380.5 | 3UTR | UCUGCAGCCCUGGAGCCCCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000343380.5 | 3UTR | UCUGCAGCCCUGGAGCCCCCUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000343380.5 | 3UTR | CUGCAGCCCUGGAGCCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC -0.651 0.17 -0.800 0.1 4 Click to see details
LIHC -0.129 0.37 -0.233 0.27 9 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
HNSC -0.014 0.48 0.064 0.43 11 Click to see details
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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