miRTarBase - #MIRT512164


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CD164   
Synonyms DFNA66, MGC-24, MGC-24v, MUC-24, endolyn
Description CD164 molecule
Transcript NM_001142401   
Other Transcripts NM_001142402 , NM_001142403 , NM_001142404 , NM_006016   
Expression
Putative miRNA Targets on CD164
3'UTR of CD164
(miRNA target sites are highlighted)		 
>CD164|NM_001142401|3'UTR
   1 ACAGACCCATTGAATTAATAAGGACTGGTGATTCATTTGTGTAACTCACTGAAGCCAAAATACTATCTTTTAAGATGTCC
  81 CACATGGAAGACGCTATTCCAGGATCTTTAAATTTCCATGGATGCATATAGGATGTTTGGGAGCATCATCCGTGAAGAAA
 161 AAATCAATTAAATCATTGTGTTCAACAGGAATATTTAAAATATTCTGCATGAATCCTGTGGCTGTCTTATTTTAAATAGC
 241 TGCTGCTGTGGGATTATATTTTTTTTCCTTAACATGCCAAATATAACTTTCTGAAAGTGATGGAAAATGTTGTCTTGTGC
 321 AGACAACATCATGGCTCTTGGCAGTTTAAATTTAGTAATTTTAATTTAGTGAACAGAATTGAGAAGAACGTGCCAAATGA
 401 GAATCAATTAGGTGGATTTTTGGCTGTCATTTCAAAAGTGGAATAAATTTATTAATTTAGTAGTACTAAATGGTATCCTT
 481 AGATTAAAATTTTGTGCTTGATAACAGCTGTTTTTTCTACATTAGAAATAAGATGCCACACAAGGAACTACATTCCAGAT
 561 TTAAAGAAATGAAAGGATACCATTAGTGTGTATAACAGATTATTGTTCATACTTGTAAAGCATCTTATGTCATTGAGAAT
 641 ATAAAGAACAGTGCCTTAGAAGACAGTGAAAGGTAAGCTCTAGCTTAATGTCTATGATTTGTTCTTTGACATTAAGGAAG
 721 GTAAGGATTGGTCAGAGGATGTAACTTGATGTGAGCAGTAGTAAACCTGTTTTAGATATCATACTGTTAATATTTTATTG
 801 AAAATTTATTTCAGAGCGGAGAAACTTAAGCTAAAGTCTGTTATACAGAATTGAAAGCCTTCGTATCTTGAACCTCCCAA
 881 CATTTTTCTTATGGCTGTTGAAAAGTATAGAGCTAAATTGATTTAATTACACTTTCCTTTGTACTTTAAAAAAAAGTATG
 961 CTAGCACTATTGTACCTTGAAAGGATTTCCACCAGACTGTCTTGAGTAGTGACTTCTTTGGTGAGGCAAGAAGGATATAC
1041 ATTATTTTAGAATCATTTACTATTTAAATGAGACAATCATATTATTTTAGAATCATTTATTTTAAATGAGACAATCATTT
1121 TAAGTTTTAAGATAACAGAAGTGACCAATGTAATTTCACAACACCTAAGGATTTTTTGGTTGATCAGGTTACTGTAGATT
1201 TTTACTGATTGTCCTGGATGAATAGACTGTGCTTTTTCTTTTTCTCTCCCTTCCTTCTTGGTTTCCCATAGTATAATAAG
1281 CATGCATACTTTAACTTCTATAGTTTTCTCCTTTAGAGGGTCGTCTTCAGTTTTAGAGGTTTACTTCTCCCTTGCCTTTG
1361 ACTCATTGGACTAGTGCAGAGGCTTTAAGTAGTTTAAAATGGGCTTTTGCTTTTCTAGGTCATTAACGTTTTTTATTTAG
1441 TTTCTTTAGCCAATAGTGGCTGAGTTTCGCACTTGATTTTCAATATTTTATAGTAAGAAATGACAAACTGCTTTGTTTCA
1521 TTTCATAAACAAACTCTGCATTTAGATAACTATTAAAGGTTGTTAAGATGAAGATTTACTGTTTCTTTGTTACTCGTTGG
1601 TACAGCTGTTTGTTTTACTTGCACATTTGTACATATACTTAATGTTTTCAAGTGCCTTAATTGTTTAAAATCTCTGGCTT
1681 CAAAGTTTCTTGGGGAAAGGTCGGTTTACCTCACATTTTTTGTTTCCATTAGTAATATTCTAGGTACCTCACAAAATGTA
1761 TTATGGTGCCATGGCTGTTAGTTTTTAGTGAGTGCTGTAGGATTAATTCGAAAATAGGCAGAATTCCATTCCTCCCAAGG
1841 TGGCAAAAATTAGCTATACTGATGTAATTGTCATTTACCTGGGTATGAATTCCCTGACACACATTCATGTCAACATATGT
1921 AGCAAATTTTGTGAAAACATAACAATTTGAAGCTTCTGTAATTTTGAGCACTGCTCTAACAACAAGCATAATATAAAATT
2001 AGTTAGATTTTGCAAGTCTACAAATGAGCTCTTGCAACAGAACTCACAGCCTTTTTACTTTTTTCCCCTAACTTTAGCAA
2081 TGTAGTATCTTGAGCCATTAATTTTTGGGTTTTTTTAAAATCCAGAAGGTATATAGAAACCTTTTCAGATTTTTCATCTG
2161 ATTTGTTCTTGCAGATGTTCTTCTATCAAATACCTTATTTTACCTTACAGATATTTGTTGCACAGGCAGATACTGCTGTA
2241 TTTAGACATTTCTATTTCAGTTCATTAAAAACTGCAAAACCAATCTGTATCATGTACCAAACTGACTTAAAATAAATCTA
2321 CATGTTTATTGAATTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGUCGG---UUGAGU------GUCACGUCu 5'
            |: |||   :|||||      :||||||| 
Target 5' ccCTTGCCTTTGACTCATTGGACTAGTGCAGa 3'
 1349 - 1380 155.00 -21.20
2 
miRNA  3' ucggucgguugaguguCACGUCu 5'
                          |||||| 
Target 5' tggaaaatgttgtcttGTGCAGa 3'
 301 - 323 120.00 -10.00
3 
miRNA  3' ucggucGGUUGAG--UGUCACGUCu 5'
                |:||||:  :|| ||:|| 
Target 5' tttcccCTAACTTTAGCAATGTAGt 3'
 2062 - 2086 115.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8397837 23 COSMIC
COSN31543990 49 COSMIC
COSN1322811 60 COSMIC
COSN31576679 80 COSMIC
COSN31513662 151 COSMIC
COSN31601397 157 COSMIC
COSN31600886 356 COSMIC
COSN30510319 381 COSMIC
COSN30543988 410 COSMIC
COSN30114640 449 COSMIC
COSN28890318 468 COSMIC
COSN30538175 482 COSMIC
COSN30122509 504 COSMIC
COSM3683944 533 COSMIC
COSM5601209 544 COSMIC
COSM9593540 551 COSMIC
COSN22387738 580 COSMIC
COSN28737932 623 COSMIC
COSN25038648 672 COSMIC
COSN25039010 672 COSMIC
COSN31480089 796 COSMIC
COSN31488915 853 COSMIC
COSN31518305 947 COSMIC
COSN15663080 990 COSMIC
COSN31519868 1026 COSMIC
COSN23471563 1092 COSMIC
COSN24294940 1196 COSMIC
COSN9963711 1207 COSMIC
COSN31542998 1513 COSMIC
COSN26583788 1766 COSMIC
COSN30170753 1861 COSMIC
COSN30168278 1911 COSMIC
COSN31568440 1947 COSMIC
COSN9290158 2092 COSMIC
COSN30540895 2233 COSMIC
rs11251 147 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753990401 1 dbSNP
rs764310916 4 dbSNP
rs1323095310 6 dbSNP
rs760729260 7 dbSNP
rs752886640 9 dbSNP
rs1282285866 12 dbSNP
rs1422088562 14 dbSNP
rs766196315 18 dbSNP
rs530032465 20 dbSNP
rs753886382 20 dbSNP
rs762996472 21 dbSNP
rs1296747945 22 dbSNP
rs1342482594 25 dbSNP
rs773054767 30 dbSNP
rs769645876 32 dbSNP
rs1415677590 34 dbSNP
rs761716013 36 dbSNP
rs1328177476 39 dbSNP
rs776410933 39 dbSNP
rs768492883 41 dbSNP
rs1177462364 45 dbSNP
rs981873331 46 dbSNP
rs1435079412 49 dbSNP
rs1262355357 53 dbSNP
rs775564166 54 dbSNP
rs919034697 65 dbSNP
rs1180551515 67 dbSNP
rs1486437796 69 dbSNP
rs754459943 71 dbSNP
rs1046403168 76 dbSNP
rs560958034 78 dbSNP
rs1195812037 81 dbSNP
rs753336423 83 dbSNP
rs1471777114 84 dbSNP
rs963032480 88 dbSNP
rs776297489 92 dbSNP
rs370192032 93 dbSNP
rs949376618 95 dbSNP
rs544335006 102 dbSNP
rs1404382894 107 dbSNP
rs1007818008 111 dbSNP
rs112067024 118 dbSNP
rs1307579911 122 dbSNP
rs1348873507 127 dbSNP
rs955089272 138 dbSNP
rs1308961816 140 dbSNP
rs11251 147 dbSNP
rs909700126 148 dbSNP
rs983911630 151 dbSNP
rs9487075 152 dbSNP
rs1210990195 164 dbSNP
rs1238441063 172 dbSNP
rs1312635252 185 dbSNP
rs1317788702 190 dbSNP
rs1179316116 194 dbSNP
rs903340160 201 dbSNP
rs545963213 203 dbSNP
rs1025774968 209 dbSNP
rs1197321229 215 dbSNP
rs1379883805 219 dbSNP
rs1435356735 221 dbSNP
rs1011645386 236 dbSNP
rs1369947013 237 dbSNP
rs894491003 238 dbSNP
rs1056168527 242 dbSNP
rs937947856 245 dbSNP
rs75406907 258 dbSNP
rs1373116707 267 dbSNP
rs1234368667 268 dbSNP
rs1018555276 276 dbSNP
rs1046284149 278 dbSNP
rs1157420606 280 dbSNP
rs1339600115 281 dbSNP
rs1007075767 282 dbSNP
rs554105610 283 dbSNP
rs773978983 284 dbSNP
rs540574633 290 dbSNP
rs1208445292 291 dbSNP
rs62436103 297 dbSNP
rs574444577 300 dbSNP
rs556827536 303 dbSNP
rs1187965896 312 dbSNP
rs770640827 314 dbSNP
rs1388451250 316 dbSNP
rs1450568946 317 dbSNP
rs1189681068 319 dbSNP
rs1430407341 319 dbSNP
rs554606303 320 dbSNP
rs1349525226 325 dbSNP
rs1259923546 326 dbSNP
rs1204591236 327 dbSNP
rs1457172511 327 dbSNP
rs1291628198 329 dbSNP
rs1483633083 330 dbSNP
rs748989994 331 dbSNP
rs1396592811 335 dbSNP
rs1441602396 339 dbSNP
rs954395414 348 dbSNP
rs1319280021 353 dbSNP
rs1362346804 356 dbSNP
rs1215818641 366 dbSNP
rs1295773278 369 dbSNP
rs9487074 373 dbSNP
rs1231951837 380 dbSNP
rs1243059589 381 dbSNP
rs1275482170 382 dbSNP
rs1469285166 385 dbSNP
rs577946619 389 dbSNP
rs977652703 389 dbSNP
rs967558599 390 dbSNP
rs1187203491 392 dbSNP
rs895126201 404 dbSNP
rs575312893 407 dbSNP
rs577172893 411 dbSNP
rs1461793924 422 dbSNP
rs937240562 425 dbSNP
rs1432271784 441 dbSNP
rs765912468 441 dbSNP
rs1289007381 444 dbSNP
rs1377946143 458 dbSNP
rs1403688608 459 dbSNP
rs1393973313 461 dbSNP
rs1310619790 465 dbSNP
rs1335863094 466 dbSNP
rs1433391371 468 dbSNP
rs1427025791 478 dbSNP
rs1266723231 479 dbSNP
rs558401596 482 dbSNP
rs1216586236 483 dbSNP
rs1392174328 492 dbSNP
rs1469437945 494 dbSNP
rs894514126 495 dbSNP
rs113601625 500 dbSNP
rs779668014 501 dbSNP
rs1267945073 517 dbSNP
rs539198418 519 dbSNP
rs1459612760 520 dbSNP
rs1261911994 521 dbSNP
rs747647412 524 dbSNP
rs1313513183 527 dbSNP
rs1304407335 528 dbSNP
rs147143577 533 dbSNP
rs1046314949 536 dbSNP
rs1312146074 537 dbSNP
rs1358022184 538 dbSNP
rs1432364801 541 dbSNP
rs1451048525 543 dbSNP
rs1405470777 544 dbSNP
rs1303443317 548 dbSNP
rs1467779966 550 dbSNP
rs1343728094 551 dbSNP
rs370187841 552 dbSNP
rs976895246 555 dbSNP
rs965093394 560 dbSNP
rs1399946542 561 dbSNP
rs1380636123 571 dbSNP
rs781730714 576 dbSNP
rs766496845 578 dbSNP
rs985708799 580 dbSNP
rs779393112 582 dbSNP
rs1037457954 586 dbSNP
rs1483938801 588 dbSNP
rs546878149 590 dbSNP
rs1214591509 600 dbSNP
rs536554335 605 dbSNP
rs1032518774 612 dbSNP
rs755377468 613 dbSNP
rs941871644 615 dbSNP
rs1244440211 622 dbSNP
rs974034 623 dbSNP
rs1357042093 624 dbSNP
rs1424383086 627 dbSNP
rs1451971567 628 dbSNP
rs780231015 639 dbSNP
rs967254016 642 dbSNP
rs376433215 648 dbSNP
rs550970992 653 dbSNP
rs758810297 655 dbSNP
rs530846307 659 dbSNP
rs1428756190 660 dbSNP
rs1327247065 664 dbSNP
rs985880558 672 dbSNP
rs1025087212 677 dbSNP
rs933009290 682 dbSNP
rs922902113 685 dbSNP
rs1274717746 687 dbSNP
rs1375332469 689 dbSNP
rs1236577069 691 dbSNP
rs895187850 692 dbSNP
rs565358661 694 dbSNP
rs1412179080 696 dbSNP
rs1055123823 699 dbSNP
rs535034663 704 dbSNP
rs1006186489 711 dbSNP
rs1246044034 723 dbSNP
rs1167765890 738 dbSNP
rs1194931348 762 dbSNP
rs1395214411 764 dbSNP
rs888382437 765 dbSNP
rs1165756099 772 dbSNP
rs967581565 778 dbSNP
rs1410863748 779 dbSNP
rs535441839 779 dbSNP
rs1323387532 781 dbSNP
rs1420307701 782 dbSNP
rs1392874768 785 dbSNP
rs1185809389 786 dbSNP
rs551631579 790 dbSNP
rs929855319 795 dbSNP
rs990755918 798 dbSNP
rs1252382939 799 dbSNP
rs958886872 804 dbSNP
rs1340393748 805 dbSNP
rs374226335 806 dbSNP
rs1002932029 812 dbSNP
rs1467070851 817 dbSNP
rs1040838314 818 dbSNP
rs1253583593 825 dbSNP
rs1272012862 835 dbSNP
rs907217931 836 dbSNP
rs750710370 840 dbSNP
rs1243481649 844 dbSNP
rs993383912 844 dbSNP
rs1475558195 845 dbSNP
rs910936190 847 dbSNP
rs1416080483 848 dbSNP
rs1463373684 858 dbSNP
rs183694855 862 dbSNP
rs748568294 863 dbSNP
rs1232101453 867 dbSNP
rs765550558 868 dbSNP
rs1388563353 872 dbSNP
rs566001211 879 dbSNP
rs1444984863 880 dbSNP
rs1320447422 881 dbSNP
rs925553550 892 dbSNP
rs1328531783 895 dbSNP
rs1462295317 912 dbSNP
rs1006490180 917 dbSNP
rs1396908850 918 dbSNP
rs978739460 935 dbSNP
rs1273719735 938 dbSNP
rs1163075613 944 dbSNP
rs1461163385 947 dbSNP
rs1025562135 956 dbSNP
rs966927869 956 dbSNP
rs75756576 958 dbSNP
rs1468487366 962 dbSNP
rs1232243192 969 dbSNP
rs1050612553 974 dbSNP
rs1189168154 981 dbSNP
rs574806319 983 dbSNP
rs1199259746 986 dbSNP
rs959730313 989 dbSNP
rs1160350417 996 dbSNP
rs933060224 999 dbSNP
rs1414012602 1000 dbSNP
rs1311224332 1004 dbSNP
rs555901812 1006 dbSNP
rs1250961238 1008 dbSNP
rs1041369212 1009 dbSNP
rs57478604 1013 dbSNP
rs9480940 1015 dbSNP
rs1236728856 1019 dbSNP
rs192803072 1022 dbSNP
rs1465171441 1028 dbSNP
rs1350682497 1035 dbSNP
rs1209543588 1037 dbSNP
rs1277732852 1039 dbSNP
rs1221587295 1041 dbSNP
rs1486487526 1043 dbSNP
rs990406214 1055 dbSNP
rs1212007128 1056 dbSNP
rs1251611793 1076 dbSNP
rs959142432 1078 dbSNP
rs1279517255 1079 dbSNP
rs1364886620 1082 dbSNP
rs927462414 1084 dbSNP
rs1477708432 1086 dbSNP
rs981938088 1093 dbSNP
rs971421409 1094 dbSNP
rs1422782883 1100 dbSNP
rs143400600 1106 dbSNP
rs1435621321 1107 dbSNP
rs897018080 1113 dbSNP
rs1041282470 1114 dbSNP
rs1440432513 1120 dbSNP
rs1389466803 1124 dbSNP
rs1308986245 1128 dbSNP
rs1336335776 1142 dbSNP
rs994168956 1145 dbSNP
rs1232926160 1148 dbSNP
rs1346029951 1149 dbSNP
rs538392842 1150 dbSNP
rs1234509440 1162 dbSNP
rs1016623633 1165 dbSNP
rs1479826349 1167 dbSNP
rs1006108358 1179 dbSNP
rs888965073 1182 dbSNP
rs573056346 1185 dbSNP
rs1251856200 1186 dbSNP
rs1468456340 1191 dbSNP
rs1191801330 1192 dbSNP
rs1399062255 1193 dbSNP
rs1396909528 1210 dbSNP
rs77471467 1212 dbSNP
rs1174164742 1220 dbSNP
rs1371569289 1222 dbSNP
rs1460264469 1226 dbSNP
rs1299736106 1228 dbSNP
rs997681463 1229 dbSNP
rs1455563908 1232 dbSNP
rs901626093 1241 dbSNP
rs924931897 1242 dbSNP
rs978407269 1243 dbSNP
rs1372492563 1244 dbSNP
rs536516743 1246 dbSNP
rs1234395120 1248 dbSNP
rs567606872 1250 dbSNP
rs1192837366 1252 dbSNP
rs918142971 1253 dbSNP
rs992753253 1254 dbSNP
rs1243492045 1258 dbSNP
rs774325478 1259 dbSNP
rs1445937411 1267 dbSNP
rs959498499 1273 dbSNP
rs1468924004 1274 dbSNP
rs1055136834 1276 dbSNP
rs1259906108 1280 dbSNP
rs937571401 1283 dbSNP
rs114710194 1285 dbSNP
rs1424010805 1287 dbSNP
rs762735907 1300 dbSNP
rs1350761656 1303 dbSNP
rs536055789 1308 dbSNP
rs759710711 1318 dbSNP
rs993477666 1322 dbSNP
rs699700 1323 dbSNP
rs1290878832 1327 dbSNP
rs775961068 1328 dbSNP
rs972778447 1332 dbSNP
rs1008493058 1333 dbSNP
rs1231859686 1342 dbSNP
rs1275583090 1354 dbSNP
rs141049741 1355 dbSNP
rs1016911831 1356 dbSNP
rs1259091531 1363 dbSNP
rs1486904317 1364 dbSNP
rs1187291394 1366 dbSNP
rs551813324 1372 dbSNP
rs1172707809 1374 dbSNP
rs1474727289 1382 dbSNP
rs953286566 1388 dbSNP
rs1419937834 1396 dbSNP
rs1042456073 1409 dbSNP
rs188730553 1417 dbSNP
rs747516868 1418 dbSNP
rs528598853 1422 dbSNP
rs1421138223 1427 dbSNP
rs997387878 1428 dbSNP
rs2356818 1436 dbSNP
rs1354491279 1438 dbSNP
rs546831929 1440 dbSNP
rs1295542073 1452 dbSNP
rs1356637976 1453 dbSNP
rs1223672111 1464 dbSNP
rs1020061626 1468 dbSNP
rs533428431 1469 dbSNP
rs892798634 1483 dbSNP
rs184077801 1490 dbSNP
rs984905144 1492 dbSNP
rs952114066 1493 dbSNP
rs1208429493 1497 dbSNP
rs1259292013 1506 dbSNP
rs936997181 1506 dbSNP
rs571137488 1508 dbSNP
rs1176479488 1509 dbSNP
rs906155429 1510 dbSNP
rs972491174 1511 dbSNP
rs1420337163 1516 dbSNP
rs8465 1516 dbSNP
rs1374443290 1519 dbSNP
rs950248521 1521 dbSNP
rs1432533245 1522 dbSNP
rs1314355045 1524 dbSNP
rs918726384 1525 dbSNP
rs575165443 1529 dbSNP
rs1210555822 1535 dbSNP
rs779291729 1535 dbSNP
rs1296897598 1536 dbSNP
rs1224408759 1538 dbSNP
rs1376240445 1538 dbSNP
rs1302825611 1546 dbSNP
rs564735517 1547 dbSNP
rs1345841724 1551 dbSNP
rs1236717344 1560 dbSNP
rs1308425256 1565 dbSNP
rs1442727174 1575 dbSNP
rs1019979161 1578 dbSNP
rs972809477 1579 dbSNP
rs1361599080 1589 dbSNP
rs1178690063 1595 dbSNP
rs941409098 1596 dbSNP
rs1175057438 1601 dbSNP
rs1425450060 1612 dbSNP
rs1409739776 1616 dbSNP
rs758178440 1616 dbSNP
rs909880690 1624 dbSNP
rs1373506593 1627 dbSNP
rs141967121 1629 dbSNP
rs1462474203 1632 dbSNP
rs1356760769 1633 dbSNP
rs953919831 1636 dbSNP
rs1028105734 1638 dbSNP
rs879167480 1641 dbSNP
rs796850410 1642 dbSNP
rs1408954852 1648 dbSNP
rs1304418042 1651 dbSNP
rs1339055000 1661 dbSNP
rs1213738016 1663 dbSNP
rs1270681654 1664 dbSNP
rs1000621062 1666 dbSNP
rs1309061339 1667 dbSNP
rs1199149152 1681 dbSNP
rs757486241 1683 dbSNP
rs1189400688 1689 dbSNP
rs1252303436 1692 dbSNP
rs1473954228 1696 dbSNP
rs1256253313 1699 dbSNP
rs985510244 1702 dbSNP
rs954180679 1703 dbSNP
rs1481284823 1704 dbSNP
rs1028930900 1710 dbSNP
rs975970937 1712 dbSNP
rs965889355 1715 dbSNP
rs17840266 1722 dbSNP
rs1020092522 1727 dbSNP
rs1009999349 1728 dbSNP
rs1253436233 1740 dbSNP
rs892922299 1743 dbSNP
rs1033174391 1747 dbSNP
rs1803964 1758 dbSNP
rs572621755 1765 dbSNP
rs1456958177 1771 dbSNP
rs896134245 1774 dbSNP
rs1164759854 1778 dbSNP
rs1001232786 1786 dbSNP
rs1057157716 1788 dbSNP
rs753975264 1790 dbSNP
rs1324326972 1794 dbSNP
rs905514018 1797 dbSNP
rs1045975574 1809 dbSNP
rs950279118 1810 dbSNP
rs897331081 1813 dbSNP
rs1342072677 1815 dbSNP
rs1219026990 1816 dbSNP
rs552687823 1823 dbSNP
rs1037126312 1826 dbSNP
rs1272460052 1828 dbSNP
rs1332674910 1831 dbSNP
rs1214985411 1842 dbSNP
rs941523258 1856 dbSNP
rs910005063 1859 dbSNP
rs926825888 1865 dbSNP
rs1190488611 1882 dbSNP
rs1235159478 1885 dbSNP
rs865903860 1887 dbSNP
rs1478344114 1893 dbSNP
rs1353616133 1894 dbSNP
rs1463519123 1903 dbSNP
rs542793044 1906 dbSNP
rs1164365491 1907 dbSNP
rs748558766 1915 dbSNP
rs9487073 1918 dbSNP
rs1399031009 1919 dbSNP
rs1320469617 1921 dbSNP
rs11542731 1924 dbSNP
rs7372 1940 dbSNP
rs1296174531 1943 dbSNP
rs972162842 1943 dbSNP
rs965919187 1945 dbSNP
rs1020206818 1946 dbSNP
rs988683629 1951 dbSNP
rs957415320 1953 dbSNP
rs986714469 1956 dbSNP
rs1032791028 1960 dbSNP
rs571569766 1963 dbSNP
rs1166622219 1964 dbSNP
rs1287708971 1966 dbSNP
rs1001664206 1968 dbSNP
rs969767826 1969 dbSNP
rs1459583729 1976 dbSNP
rs953971801 1978 dbSNP
rs573672801 1982 dbSNP
rs1255789465 1989 dbSNP
rs3799832 1997 dbSNP
rs1159271700 2006 dbSNP
rs537571218 2007 dbSNP
rs1363742690 2008 dbSNP
rs1468656163 2018 dbSNP
rs1014467152 2020 dbSNP
rs1253291123 2023 dbSNP
rs1434393010 2031 dbSNP
rs535086421 2035 dbSNP
rs1373354560 2037 dbSNP
rs897444930 2040 dbSNP
rs967893264 2047 dbSNP
rs1021144687 2049 dbSNP
rs367979149 2050 dbSNP
rs896172196 2052 dbSNP
rs1310874449 2061 dbSNP
rs1353825029 2065 dbSNP
rs1037241958 2066 dbSNP
rs1056141029 2067 dbSNP
rs1277755018 2070 dbSNP
rs1005740425 2075 dbSNP
rs751519619 2077 dbSNP
rs1049311744 2080 dbSNP
rs1436621201 2086 dbSNP
rs76966996 2090 dbSNP
rs1184054667 2091 dbSNP
rs1333046378 2096 dbSNP
rs1049858714 2097 dbSNP
rs930829040 2100 dbSNP
rs11542730 2101 dbSNP
rs932690739 2115 dbSNP
rs1239869967 2116 dbSNP
rs111388243 2117 dbSNP
rs922607473 2117 dbSNP
rs1318613936 2118 dbSNP
rs1467383629 2122 dbSNP
rs1304820032 2124 dbSNP
rs1390801576 2140 dbSNP
rs919416320 2142 dbSNP
rs1041102515 2144 dbSNP
rs1395654424 2156 dbSNP
rs1036893272 2159 dbSNP
rs944801215 2161 dbSNP
rs1803963 2168 dbSNP
rs1376908760 2171 dbSNP
rs370787382 2172 dbSNP
rs1300791187 2175 dbSNP
rs1313658418 2177 dbSNP
rs1234386430 2180 dbSNP
rs1251157071 2185 dbSNP
rs1337883947 2188 dbSNP
rs986099400 2189 dbSNP
rs1239329056 2190 dbSNP
rs566162812 2194 dbSNP
rs766293943 2202 dbSNP
rs913176924 2204 dbSNP
rs988714453 2208 dbSNP
rs1379308360 2209 dbSNP
rs1269696526 2214 dbSNP
rs1434030121 2221 dbSNP
rs921207905 2227 dbSNP
rs1172660283 2230 dbSNP
rs1438245305 2230 dbSNP
rs1401015103 2234 dbSNP
rs1460463371 2235 dbSNP
rs979298267 2238 dbSNP
rs968324155 2243 dbSNP
rs1393296820 2252 dbSNP
rs542354690 2255 dbSNP
rs1294448418 2263 dbSNP
rs957241598 2268 dbSNP
rs1020776790 2274 dbSNP
rs1454921715 2275 dbSNP
rs192808712 2279 dbSNP
rs1259256921 2283 dbSNP
rs529908637 2289 dbSNP
rs1334806549 2292 dbSNP
rs1211868237 2303 dbSNP
rs1803962 2305 dbSNP
rs988346136 2322 dbSNP
rs960489228 2327 dbSNP
rs1259931279 2332 dbSNP
rs1476710614 2336 dbSNP
rs979878539 2338 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucggucgguugagugucaCGUCu 5'
                            |||| 
Target 5' acaacaucauggcucuugGCAGu 3'
 		1 - 23
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 8763.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucgGUCG-GUUGAG---UGUCACGUcu 5'
             || | :::|||   :|||| :|  
Target 5' caaCAUCAUGGCUCUUGGCAGUUUAaa 3'
 		2 - 28
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 8763.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001142402 | 3UTR | UUGGACUAGUGCAGAGGCUUUAAGUAGUUUAAAAUGGGCUUUUGCUUUUCUAGGUCAUUAACGUUUUUUAUUUAGUUUCUUUAGCCAAUAGUGGCUGAGUUUCGCACUUGAUUUUCAAUAUUUUAUAGUAAGAAAUGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001142402 | 3UTR | GAGGCUUUAAGUAGUUUAAAAUGGGCUUUUGCUUUUCUAGGUCAUUAACGUUUUUUAUUUAGUUUCUUUAGCCAAUAGUGGCUGAGUUUCGCACUUGAUUUUCAAUAUUUUAUAGUAAGAAAUGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001142402 | 3UTR | UUGGACUAGUGCAGAGGCUUUAAGUAGUUUAAAAUGGGCUUUUGCUUUUCUAGGUCAUUAACGUUUUUUAUUUAGUUUCUUUAGCCAAUAGUGGCUGAGUUUCGCACUUGAUUUUCAAUAUUUUAUAGUAAGAAAUGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001142402 | 3UTR | UGCAGAGGCUUUAAGUAGUUUAAAAUGGGCUUUUGCUUUUCUAGGUCAUUAACGUUUUUUAUUUAGUUUCUUUAGCCAAUAGUGGCUGAGUUUCGCACUUGAUUUUCAAUAUUUUAUAGUAAGAAAUGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001142402 | 3UTR | CUCAUUGGACUAGUGCAGAGGCUUUAAGUAGUUUAAAAUGGGCUUUUGCUUUUCUAGGUCAUUAACGUUUUUUAUUUAGUUUCUUUAGCCAAUAGUGGCUGAGUUUCGCACUUGAUUUUCAAUAUUUUAUAGUAAGAAAUGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001142402 | 3UTR | GCCAAAUAUAACUUUCUGAAAGUGAUGGAAAAUGUUGUCUUGUGCAGACAACAUCAUGGCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000368961.5 | 3UTR | ACAACAUCAUGGCUCUUGGCAGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000368961.5 | 3UTR | ACAACAUCAUGGCUCUUGGCAGUUUAAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000368961.5 | 3UTR | GACAACAUCAUGGCUCUUGGCAGUUUAAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000368961.5 | 3UTR | ACAACAUCAUGGCUCUUGGCAGUUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000368961.5 | 3UTR | ACAACAUCAUGGCUCUUGGCAGUUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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