pre-miRNA Information
pre-miRNA hsa-mir-4781   
Genomic Coordinates chr1: 54054079 - 54054154
Description Homo sapiens miR-4781 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4781-3p
Sequence 46| AAUGUUGGAAUCCUCGCUAGAG |67
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs968609764 2 dbSNP
rs899910686 3 dbSNP
rs74085143 4 dbSNP
rs550946107 8 dbSNP
rs747064911 10 dbSNP
rs1352517651 13 dbSNP
rs1436072914 22 dbSNP
Putative Targets

Gene Information
Gene Symbol LAYN   
Synonyms -
Description layilin
Transcript NM_178834   
Expression
Putative miRNA Targets on LAYN
3'UTR of LAYN
(miRNA target sites are highlighted)
>LAYN|NM_178834|3'UTR
   1 GACATATAAAAAACTGAAACTGACAACAATGGAAAAGAAATGATAAGCAAAATCCTCTTATTTTCTATAAGGAAAATACA
  81 CAGAAGGTCTATGAACAAGCTTAGATCAGGTCCTGTGGATGAGCATGTGGTCCCCACGACCTCCTGTTGGACCCCCACGT
 161 TTTGGCTGTATCCTTTATCCCAGCCAGTCATCCAGCTCGACCTTATGAGAAGGTACCTTGCCCAGGTCTGGCACATAGTA
 241 GAGTCTCAATAAATGTCACTTGGTTGGTTGTATCTAACTTTTAAGGGACAGAGCTTTACCTGGCAGTGATAAAGATGGGC
 321 TGTGGAGCTTGGAAAACCACCTCTGTTTTCCTTGCTCTATACAGCAGCACATATTATCATACAGACAGAAAATCCAGAAT
 401 CTTTTCAAAGCCCACATATGGTAGCACAGGCTGGCCTGTGCATCGGCAATTCTCATATCTGTTTTTTTCAAAGAATAATA
 481 AAATCAAATAAAGAGCAGGAAACAGAGTGTTAGTCTGTGTCTACAGCCCTTCCTCTGCATGTGGCCACAGGGGACCTTTT
 561 TTTGTTTCTCCTGACATCCAGACTTGGAAATATCTAACTACTTGCAAAACTAAAAATGAGGCCAGGCGCAGTGGCTGACG
 641 CCTGTAATCCCAGAACCTTGGGAGACCAAGATTGGAGGATAGCTTGAGTTCAGGAGTTCCAGACCTTCCTGGGCAAAATA
 721 GTGAGACTCTGACTCTACAAAAAATTTAAAAATTAGCAGGGCATGGTGGCATGCGCCTGCAGTCCCAGCTACTCAGGAGG
 801 CCGAGGTGGGGGAATTGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTAGGATCACGCCACTGCTCTCCTGCGTGGGC
 881 AACAGAATGAGACCCTGTCTCTAAACAAAAATATTTTTTAAAGAAACTAAAAATGAAATTTGAGTCTCAGCTTCTAGGCT
 961 TATGTACTCCCATCCCTGATACTACACGTTGTTCTGTTTGCATGTTTGTTACTGCAGCATCAACATAACATGACTAATAA
1041 TGATGACAGTTCTACCTTTTGTTGACAGACCTCATTGTTTCAATTGTGTTTGGCCTCAAATTCAGAGAAAAGTTTCTCAG
1121 CCCAGCATCAATCATATACACATTGGAGGTCTGAAAGCCATTATTTAAATCACCAGCAATTTCCCTCAATCAGCTTCATA
1201 ATCTCATATTTTAACCTTTCCTCATATGTCTTATTTTTTAATAGCTCAGCAACTTTGCTTCACATATGGAGCCCCAACCT
1281 CTAGAGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaGAUCGC-UCCUAAGGUUGUAa 5'
            :|| :| || |  :|||||| 
Target 5' tgTTACTGCAGCA--TCAACATa 3'
1007 - 1027 132.00 -6.90
2
miRNA  3' gagaucgcuccuaaGGUUGUAa 5'
                        |||:||| 
Target 5' aaaagtttctcagcCCAGCATc 3'
1108 - 1129 124.00 -10.11
3
miRNA  3' gaGAUCGCUCCUAAGGUUGUAa 5'
            || | || ||  |||| || 
Target 5' acCTTGGGA-GA--CCAAGATt 3'
655 - 673 119.00 -9.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31512684 3 COSMIC
COSN31554975 56 COSMIC
COSN31559055 56 COSMIC
COSN31575373 66 COSMIC
COSN30179793 94 COSMIC
COSN5296687 138 COSMIC
COSN19454820 203 COSMIC
COSN10077973 389 COSMIC
COSN17029677 445 COSMIC
COSN21988549 446 COSMIC
COSN29460963 447 COSMIC
COSN20108741 480 COSMIC
COSN20697081 512 COSMIC
COSN31569365 564 COSMIC
COSN9030061 754 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs770233875 1 dbSNP
rs773852200 2 dbSNP
rs759317614 3 dbSNP
rs767133161 5 dbSNP
rs1421125508 8 dbSNP
rs1410076556 9 dbSNP
rs775075932 14 dbSNP
rs760276509 18 dbSNP
rs1028424497 20 dbSNP
rs763888952 21 dbSNP
rs1377487505 25 dbSNP
rs753848438 26 dbSNP
rs756974432 28 dbSNP
rs765130815 30 dbSNP
rs1366605662 31 dbSNP
rs750604198 34 dbSNP
rs1420238348 36 dbSNP
rs1215281349 37 dbSNP
rs1272602284 38 dbSNP
rs1333409752 39 dbSNP
rs1216089790 43 dbSNP
rs1169596764 46 dbSNP
rs933103821 60 dbSNP
rs533908029 63 dbSNP
rs553865881 64 dbSNP
rs1188366775 65 dbSNP
rs1486482995 66 dbSNP
rs1254959590 67 dbSNP
rs753817659 68 dbSNP
rs1437917982 71 dbSNP
rs966395480 73 dbSNP
rs566576035 77 dbSNP
rs1247302805 87 dbSNP
rs533958377 88 dbSNP
rs1004573924 95 dbSNP
rs971902797 99 dbSNP
rs1234275128 101 dbSNP
rs1357679892 105 dbSNP
rs1475220074 110 dbSNP
rs1447510218 120 dbSNP
rs549113596 127 dbSNP
rs1016329140 130 dbSNP
rs567340856 133 dbSNP
rs919114063 135 dbSNP
rs1399444317 136 dbSNP
rs898948319 139 dbSNP
rs1165468159 140 dbSNP
rs1421881317 147 dbSNP
rs181406783 149 dbSNP
rs185772962 154 dbSNP
rs369172638 159 dbSNP
rs539790110 160 dbSNP
rs1462888995 169 dbSNP
rs558409687 171 dbSNP
rs970884283 178 dbSNP
rs1436643108 185 dbSNP
rs1326015327 190 dbSNP
rs1214796533 195 dbSNP
rs752511187 196 dbSNP
rs1428000642 199 dbSNP
rs1031238521 200 dbSNP
rs1045844101 206 dbSNP
rs1281406378 210 dbSNP
rs1440109419 217 dbSNP
rs1376168326 218 dbSNP
rs1271617835 222 dbSNP
rs1326514506 227 dbSNP
rs1462908710 233 dbSNP
rs907450504 236 dbSNP
rs1400983252 240 dbSNP
rs1409699317 240 dbSNP
rs1362208507 241 dbSNP
rs1438551219 242 dbSNP
rs934933316 248 dbSNP
rs1194837954 250 dbSNP
rs1053280060 258 dbSNP
rs1292986808 264 dbSNP
rs1333349005 268 dbSNP
rs956941118 271 dbSNP
rs893266290 286 dbSNP
rs1011771094 289 dbSNP
rs1028373698 290 dbSNP
rs989532847 295 dbSNP
rs1446543952 299 dbSNP
rs1213706717 309 dbSNP
rs1443070200 311 dbSNP
rs889883684 319 dbSNP
rs1292790207 320 dbSNP
rs1244117365 328 dbSNP
rs1351462379 333 dbSNP
rs758193597 340 dbSNP
rs1156517339 351 dbSNP
rs915227872 367 dbSNP
rs1478270440 371 dbSNP
rs1186963852 372 dbSNP
rs140906743 380 dbSNP
rs540396530 388 dbSNP
rs1423684220 390 dbSNP
rs1191057464 402 dbSNP
rs386757485 410 dbSNP
rs150167238 411 dbSNP
rs138885489 412 dbSNP
rs1051576869 418 dbSNP
rs1213960798 420 dbSNP
rs542275 432 dbSNP
rs1319711278 441 dbSNP
rs746400484 445 dbSNP
rs951840382 450 dbSNP
rs142705857 451 dbSNP
rs191010525 455 dbSNP
rs1413721035 456 dbSNP
rs1312673464 457 dbSNP
rs1286869000 459 dbSNP
rs915652318 462 dbSNP
rs182725214 463 dbSNP
rs149186676 474 dbSNP
rs377335486 474 dbSNP
rs1432334599 477 dbSNP
rs373701340 477 dbSNP
rs201966266 480 dbSNP
rs551939573 496 dbSNP
rs1011886600 499 dbSNP
rs770259514 500 dbSNP
rs72645436 508 dbSNP
rs1191932348 510 dbSNP
rs775870019 529 dbSNP
rs1031122942 530 dbSNP
rs147344957 539 dbSNP
rs1488748107 543 dbSNP
rs111957205 546 dbSNP
rs956993392 550 dbSNP
rs1011579525 553 dbSNP
rs1293246534 556 dbSNP
rs1217779844 557 dbSNP
rs1049956295 566 dbSNP
rs1294763640 567 dbSNP
rs1022508977 571 dbSNP
rs964403056 572 dbSNP
rs868643367 582 dbSNP
rs1298224270 595 dbSNP
rs889855894 596 dbSNP
rs1486557127 597 dbSNP
rs1008756437 602 dbSNP
rs138041078 607 dbSNP
rs1169074808 616 dbSNP
rs1465443227 622 dbSNP
rs1418963775 626 dbSNP
rs1232298621 628 dbSNP
rs1422249280 631 dbSNP
rs149481622 632 dbSNP
rs1159804589 640 dbSNP
rs761276481 641 dbSNP
rs1481613415 642 dbSNP
rs1256082309 643 dbSNP
rs955428442 654 dbSNP
rs1433745959 657 dbSNP
rs1274772966 658 dbSNP
rs1171405549 659 dbSNP
rs376143130 665 dbSNP
rs1339490460 671 dbSNP
rs537978105 673 dbSNP
rs549842683 678 dbSNP
rs1392624471 679 dbSNP
rs1329932287 683 dbSNP
rs1376876662 695 dbSNP
rs73555172 701 dbSNP
rs1456636047 703 dbSNP
rs1026614265 705 dbSNP
rs1335275528 711 dbSNP
rs1335695287 715 dbSNP
rs371641767 716 dbSNP
rs1160018780 718 dbSNP
rs1420973283 722 dbSNP
rs1440575098 723 dbSNP
rs1281372019 724 dbSNP
rs144362375 736 dbSNP
rs1468835865 738 dbSNP
rs1254716709 740 dbSNP
rs1207834044 745 dbSNP
rs1260955694 746 dbSNP
rs1354455859 754 dbSNP
rs951995192 757 dbSNP
rs984587807 758 dbSNP
rs907706450 762 dbSNP
rs940495683 767 dbSNP
rs1446754287 771 dbSNP
rs373940944 772 dbSNP
rs761873022 775 dbSNP
rs368640023 776 dbSNP
rs969769624 779 dbSNP
rs981572175 788 dbSNP
rs1378589378 793 dbSNP
rs767666986 803 dbSNP
rs1454704633 804 dbSNP
rs1436027892 807 dbSNP
rs928423081 811 dbSNP
rs1044724026 815 dbSNP
rs955858533 816 dbSNP
rs1450837957 820 dbSNP
rs376879745 830 dbSNP
rs1238679115 833 dbSNP
rs1003246422 839 dbSNP
rs1453323811 840 dbSNP
rs1191193924 846 dbSNP
rs914819505 847 dbSNP
rs1234379886 852 dbSNP
rs186388945 858 dbSNP
rs773144328 860 dbSNP
rs572086489 875 dbSNP
rs1011044274 876 dbSNP
rs1402134884 877 dbSNP
rs1022986642 881 dbSNP
rs911364489 884 dbSNP
rs944237267 891 dbSNP
rs765262092 892 dbSNP
rs1334001512 898 dbSNP
rs1373476416 914 dbSNP
rs1378277461 914 dbSNP
rs1185803120 916 dbSNP
rs897243443 922 dbSNP
rs752599333 923 dbSNP
rs555500003 930 dbSNP
rs994566789 945 dbSNP
rs1029659773 952 dbSNP
rs1048418961 960 dbSNP
rs1486378957 960 dbSNP
rs568038 979 dbSNP
rs1199286517 983 dbSNP
rs1006124261 984 dbSNP
rs982867379 987 dbSNP
rs1015658310 988 dbSNP
rs560966833 989 dbSNP
rs1220849049 997 dbSNP
rs970273808 999 dbSNP
rs1277823398 1000 dbSNP
rs1415576721 1004 dbSNP
rs1342380470 1006 dbSNP
rs1332245700 1018 dbSNP
rs529790681 1023 dbSNP
rs1413891730 1024 dbSNP
rs1002712302 1031 dbSNP
rs1172648384 1035 dbSNP
rs973243675 1036 dbSNP
rs1463878404 1040 dbSNP
rs920538734 1041 dbSNP
rs1188256583 1044 dbSNP
rs1197307929 1050 dbSNP
rs1235296391 1051 dbSNP
rs1186209910 1053 dbSNP
rs75568536 1061 dbSNP
rs1274331090 1069 dbSNP
rs980446250 1072 dbSNP
rs756815068 1073 dbSNP
rs1234180725 1083 dbSNP
rs1254275541 1085 dbSNP
rs927637861 1093 dbSNP
rs556603336 1094 dbSNP
rs968385647 1095 dbSNP
rs577971700 1098 dbSNP
rs938988492 1100 dbSNP
rs944167282 1110 dbSNP
rs1052145777 1126 dbSNP
rs77023778 1135 dbSNP
rs560190087 1137 dbSNP
rs1406796050 1142 dbSNP
rs111561113 1144 dbSNP
rs542931374 1146 dbSNP
rs1401666640 1150 dbSNP
rs1162213321 1152 dbSNP
rs1470212895 1178 dbSNP
rs1461325272 1183 dbSNP
rs1323996504 1185 dbSNP
rs900117233 1186 dbSNP
rs1234069818 1188 dbSNP
rs1392915319 1190 dbSNP
rs1387390528 1194 dbSNP
rs997105015 1202 dbSNP
rs1323808133 1207 dbSNP
rs1295182649 1208 dbSNP
rs561111714 1224 dbSNP
rs1048370202 1228 dbSNP
rs1029880101 1245 dbSNP
rs142382974 1249 dbSNP
rs1334092099 1250 dbSNP
rs549647175 1258 dbSNP
rs146398816 1267 dbSNP
rs1347846042 1268 dbSNP
rs1322505155 1270 dbSNP
rs1004193115 1278 dbSNP
rs1381674900 1279 dbSNP
rs1156286678 1282 dbSNP
rs1274539947 1285 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 143903.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 "HITS-CLIP data was present in GSM714643. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gagaucgcuccuaagGUUGUAa 5'
                         |||||| 
Target 5' ----------cugggCAACAUa 3'
1 - 12
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 143903.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000525126.1 | 3UTR | UGGGCAACAUAACGAGACCCCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714643
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000525126.1 | 3UTR | CUGGGCAACAUAACGAGACCCCGUCUCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000525126.1 | 3UTR | CAACAUAACGAGACCCCGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
204 hsa-miR-4781-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT071728 CCNK cyclin K 2 2
MIRT184858 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT205881 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT218699 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2 2
MIRT223783 OXR1 oxidation resistance 1 2 2
MIRT242435 GAN gigaxonin 2 2
MIRT306825 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT334170 CCND1 cyclin D1 2 6
MIRT339617 TMPO thymopoietin 2 2
MIRT400371 C2ORF68 chromosome 2 open reading frame 68 2 2
MIRT445533 KIF1B kinesin family member 1B 2 4
MIRT450273 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450701 RORA RAR related orphan receptor A 2 2
MIRT451160 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT453775 NUCB1 nucleobindin 1 2 10
MIRT453884 IFRD1 interferon related developmental regulator 1 2 12
MIRT454238 OSBPL10 oxysterol binding protein like 10 2 9
MIRT458661 PAGR1 PAXIP1 associated glutamate rich protein 1 2 12
MIRT466948 STAU1 staufen double-stranded RNA binding protein 1 2 2
MIRT470278 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT471144 PHF19 PHD finger protein 19 2 2
MIRT471873 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT476739 FOXN2 forkhead box N2 2 2
MIRT480453 C16orf72 chromosome 16 open reading frame 72 2 6
MIRT482107 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483374 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT484063 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT496329 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT498659 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 4
MIRT498711 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499322 ZNF485 zinc finger protein 485 2 6
MIRT499711 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499767 CIRH1A UTP4, small subunit processome component 2 6
MIRT499912 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 8
MIRT504946 ZSWIM6 zinc finger SWIM-type containing 6 2 4
MIRT505377 TMEM154 transmembrane protein 154 2 4
MIRT508778 GSG1 germ cell associated 1 2 2
MIRT509793 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT512421 LAYN layilin 2 4
MIRT513321 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT513592 DCTN6 dynactin subunit 6 2 2
MIRT514785 RBM4B RNA binding motif protein 4B 2 2
MIRT514859 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515122 LMOD3 leiomodin 3 2 2
MIRT515271 CSNK1E casein kinase 1 epsilon 2 2
MIRT515594 FBXL13 F-box and leucine rich repeat protein 13 2 2
MIRT515880 PLXDC2 plexin domain containing 2 2 2
MIRT515908 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT515960 C9orf156 tRNA methyltransferase O 2 2
MIRT517210 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517330 ZNF347 zinc finger protein 347 2 2
MIRT517480 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517594 ZNF579 zinc finger protein 579 2 4
MIRT517676 TRIM72 tripartite motif containing 72 2 2
MIRT518215 TRMT10B tRNA methyltransferase 10B 2 2
MIRT518583 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT518777 ZFP14 ZFP14 zinc finger protein 2 2
MIRT519094 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 4
MIRT519112 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT519400 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519446 GLA galactosidase alpha 2 2
MIRT519476 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT519711 ZNF584 zinc finger protein 584 2 4
MIRT521409 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT521522 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT522652 MANEAL mannosidase endo-alpha like 2 2
MIRT523505 GMPS guanine monophosphate synthase 2 4
MIRT523795 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT524062 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524136 DMXL1 Dmx like 1 2 2
MIRT524192 DENND4C DENN domain containing 4C 2 4
MIRT525925 KIAA0391 KIAA0391 2 2
MIRT528021 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT528685 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT528769 CD1D CD1d molecule 2 2
MIRT529373 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529469 ZNF546 zinc finger protein 546 2 2
MIRT529641 ZNF621 zinc finger protein 621 2 2
MIRT530681 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT530752 GPR82 G protein-coupled receptor 82 2 2
MIRT531628 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT531649 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT532179 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT532219 CCDC117 coiled-coil domain containing 117 2 2
MIRT534238 SLC25A16 solute carrier family 25 member 16 2 4
MIRT539952 SLC30A5 solute carrier family 30 member 5 2 2
MIRT540179 MB21D1 Mab-21 domain containing 1 2 2
MIRT540466 ZNF71 zinc finger protein 71 2 2
MIRT540560 PPIC peptidylprolyl isomerase C 2 2
MIRT543265 ZNF662 zinc finger protein 662 2 2
MIRT543596 KIAA1549 KIAA1549 2 2
MIRT543971 RNF20 ring finger protein 20 2 2
MIRT544053 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544605 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT544679 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT547627 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT550668 TRAF1 TNF receptor associated factor 1 2 2
MIRT551533 EMB embigin 2 2
MIRT552443 ZNF449 zinc finger protein 449 2 2
MIRT559265 BAG4 BCL2 associated athanogene 4 2 4
MIRT562479 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT564211 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT565973 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT570524 SHH sonic hedgehog 2 2
MIRT575307 Osbpl10 oxysterol binding protein-like 10 2 6
MIRT618212 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT620115 HARBI1 harbinger transposase derived 1 2 2
MIRT624062 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT626083 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT629868 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630750 COG6 component of oligomeric golgi complex 6 2 2
MIRT631002 ZNF573 zinc finger protein 573 2 2
MIRT631100 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631290 SGSM1 small G protein signaling modulator 1 2 2
MIRT631337 CD300E CD300e molecule 2 2
MIRT631532 MYO6 myosin VI 2 2
MIRT631644 WDR91 WD repeat domain 91 2 4
MIRT632788 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633282 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633593 ABRACL ABRA C-terminal like 2 2
MIRT634074 PLIN3 perilipin 3 2 2
MIRT634163 YME1L1 YME1 like 1 ATPase 2 2
MIRT634257 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634679 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT638384 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638687 GCLM glutamate-cysteine ligase modifier subunit 2 2
MIRT640311 PRR13 proline rich 13 2 2
MIRT641132 NPHP3 nephrocystin 3 2 2
MIRT642315 FPR1 formyl peptide receptor 1 2 2
MIRT643703 KIAA0586 KIAA0586 2 2
MIRT644322 NFKBID NFKB inhibitor delta 2 2
MIRT645741 POLR3A RNA polymerase III subunit A 2 2
MIRT646975 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 2
MIRT648064 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648536 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT649294 NEK8 NIMA related kinase 8 2 2
MIRT650014 KLB klotho beta 2 2
MIRT650551 YIPF4 Yip1 domain family member 4 2 2
MIRT651796 UTP6 UTP6, small subunit processome component 2 2
MIRT652647 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653548 SLC38A7 solute carrier family 38 member 7 2 2
MIRT653895 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT655470 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT657764 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT659118 DENND6A DENN domain containing 6A 2 2
MIRT659377 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659836 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT659954 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT660258 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT663268 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT663766 ZNF285 zinc finger protein 285 2 2
MIRT666198 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT669763 ZNF101 zinc finger protein 101 2 4
MIRT669933 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT670007 GPR156 G protein-coupled receptor 156 2 4
MIRT670465 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670868 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671313 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671959 SPPL3 signal peptide peptidase like 3 2 2
MIRT672281 SHE Src homology 2 domain containing E 2 2
MIRT673654 CYCS cytochrome c, somatic 2 2
MIRT674063 ATXN3 ataxin 3 2 2
MIRT674423 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT674438 MIOX myo-inositol oxygenase 2 4
MIRT674483 BCL2L15 BCL2 like 15 2 2
MIRT675478 NUBPL nucleotide binding protein like 2 2
MIRT675648 TTPAL alpha tocopherol transfer protein like 2 2
MIRT675981 FAM126B family with sequence similarity 126 member B 2 2
MIRT676251 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT677652 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT682718 KIAA1456 KIAA1456 2 2
MIRT687545 MOB1B MOB kinase activator 1B 2 2
MIRT689620 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690035 CCDC90B coiled-coil domain containing 90B 2 2
MIRT691449 CXorf36 chromosome X open reading frame 36 2 2
MIRT691549 FLYWCH2 FLYWCH family member 2 2 2
MIRT691737 LARS leucyl-tRNA synthetase 2 2
MIRT692638 SUSD1 sushi domain containing 1 2 2
MIRT693866 IYD iodotyrosine deiodinase 2 2
MIRT693979 ZNF70 zinc finger protein 70 2 2
MIRT694150 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT695492 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695547 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT696023 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696402 CORO7 coronin 7 2 2
MIRT703028 HEATR5A HEAT repeat containing 5A 2 2
MIRT703559 FKBP14 FK506 binding protein 14 2 2
MIRT705036 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT705120 C4orf29 abhydrolase domain containing 18 2 2
MIRT706611 CYB5B cytochrome b5 type B 2 2
MIRT706635 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706730 RFK riboflavin kinase 2 2
MIRT706868 MAFF MAF bZIP transcription factor F 2 2
MIRT707020 RRP36 ribosomal RNA processing 36 2 2
MIRT707036 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707125 ZNF154 zinc finger protein 154 2 2
MIRT707390 SLC35F6 solute carrier family 35 member F6 2 2
MIRT708664 LYRM7 LYR motif containing 7 2 2
MIRT713010 BBX BBX, HMG-box containing 2 2
MIRT717314 TRAF3IP1 TRAF3 interacting protein 1 2 2
MIRT721912 C6orf201 chromosome 6 open reading frame 201 2 2
MIRT723050 YTHDC1 YTH domain containing 1 2 2
MIRT725038 NDUFAF7 NADH:ubiquinone oxidoreductase complex assembly factor 7 2 2
MIRT755316 SMAD5 SMAD family member 5 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4781-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4781-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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