miRTarBase - #MIRT512540


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pre-miRNA Information
pre-miRNA hsa-mir-302b   
Genomic Coordinates chr4: 112648485 - 112648557
Description Homo sapiens miR-302b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-302b-5p
Sequence 11| ACUUUAACAUGGAAGUGCUUUC |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8489942 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs771747691 1 dbSNP
rs1413992790 2 dbSNP
rs1287454726 3 dbSNP
rs1407802102 5 dbSNP
rs556661625 8 dbSNP
rs114318553 9 dbSNP
rs183105707 12 dbSNP
rs759066554 13 dbSNP
rs1338196516 15 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF793   
Synonyms -
Description zinc finger protein 793
Transcript NM_001013659   
Expression
Putative miRNA Targets on ZNF793
3'UTR of ZNF793
(miRNA target sites are highlighted)		 
>ZNF793|NM_001013659|3'UTR
   1 GCAAAATATCTGGTTTCATGGTATGTAGGGAATTTTTTTTTTTTTTTTTTGAGTTGGAATCTCACTTTGTCACCCAGGCT
  81 GGAGTGCAGTGGCGCGATCTCGGCTTACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAG
 161 TAGCTGGGACTACAGGTGCCCACCACCATGCCCGGCTAATTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTG
 241 TTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCGCCTTGTCCTCCCAAAGTGCTGGGATTACAGGCGTGAG
 321 CCACCGCGCCTGGCCGGTATGTAGGGAATTTATCCTTAGGAGAAATCTTATCATTTTAATGAATTTGAACAGTGTGTTTT
 401 TATTTTATTTATTTATTTATTTTGAGTTGTATTCTCTGTTTCCCAGGCTGGAGTGCAATGGCACTATCTCGGCTCACTGT
 481 AACCTCAGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACGC
 561 CTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCTTTGGCTAGGCTGGTCTCG
 641 AACTCCTGACCTCGTGATACCCCCCAACCCCCCGCCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCAACGCG
 721 CCCAACCGACAGTGTTGTATCATAATGGAAATCATGATCTAATTGTGATACAAACTTTTCTAGAAAATACTTTCTCAAAC
 801 ATAAGCATGGACACCCTGGCATGTAAACGTTTAAAAATGTATTAAATGGAATAACAGCAGAATACAAAATATCTGTGAAG
 881 AGACTTAAAGGCATACTCTGGTATATTCCACAGTGAGCCATACAATCAGCATTATTTGTATTTTGGAGTTGTAAATGTGA
 961 AATTAACATAAAATGTGAATATCAGACACATGTCACACAACATATAGAATGCCATTCAGAAAACTTTTCCACTTTAAATA
1041 TCATCATTGTCTTTTGATGTCTTAACAATACAAAAAAATAACAACAACATGGCCCACTATTGTTAAAAGAACTTTATTAT
1121 ACCAGCTACATTTTTCCACCTTTTTGTAATACATGTAAATGGCTATAGAGGTTGTTACTGTCCTCTGCAGAAATAATAAA
1201 GCAGTGTTTTTAAATGTATTTGGATAATTTGGCCAAAAATTTTACTAAAATGTAGTTATTTATATTAAAAATGCAAGCTA
1281 AGGAATAGTTTAAGAACCTGATACTGGGTAAATGAAACACTGTAAACTATTTGACAAAATGTAGTGTCACCCTGGTGTAC
1361 AGTACACTGTTCATATTTTCTTAGTCTTGCTTAAAATATCTTGTAGCAAATTAGTAGCATTGCTACACTATTCTAGATAC
1441 ACTATTCTATATACAGGTTGTATAACTCAGAAATGTTTCATGCGTAGACCACTGAAGGAGAATTTCTTTTCTCTCTATCC
1521 CTCTGCAAATTAATTCAAGAATATTCATTTTTTTCATATAAATTTCCTTGCAAGTGTCCTAGACACTAAATCCCAAGGTT
1601 TTAATTATTTCAATGTTTGGAAAGAAGTCTGCTTCCCTGAGTTGCTATGTCATCCATATTAGAAAATAAATGGCCATGTG
1681 GAATCTACATTTTTCAAGATTTCCCTCCATGTAAGACTGCCTGATCCAGAATGAGAAAGGAGACATAACCACAGATATCA
1761 ATATGATTTTTTAAGTGATAAAAAGATACCTCATACAACTCTAATCAACATATTTTTTAAAAAGAGGAGGTGGATGCTTT
1841 TCTAATAAACTTAAGTTATGAAAACTGCAATAAGAAGTAGAAAACTTGGTAGGATAGTTAACATTGAAAAACTCAAAAAA
1921 GCTATTAAAGATCTATAATGGGAAAATGCTCCAGGCTCAGAAGAGTTCATGCTTAGTTCTATCTTTTAAAGAAAGAGTAA
2001 TACCAGTGTTATTTATTATATGGATGTAATACAATCCATGAACTGTACTCATTTATTTTATTAAGTCAGAATAAATTTTA
2081 ACACCAAAATCAAATACAGATAGTTGAAAAAAGAAAACTTCTGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAACACTT
2161 TGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGAAGTTCGAGATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTA
2241 GCCGGGTGTGGTGGCACACACCTGTAGTCCCAGCTACTTGGGAGGTTGAGGCATGAGGCAGGAGAATTGCTTGTACCCAG
2321 GAGGTAGAGGTTGCGGTGAGCCAAGATCGTGCCATCCAGCCTGGGTGACAAGAGCGAAACTCCGTCAAAAAAAAAAAAAA
2401 AAAAAGAAAACTTCAGACCAGTCTTACTCATGAATATAGAAACAAAAATTATAGTTAAAATACTAGCAAATAGAATTCAG
2481 CCATATACCCAAAGAGTGACATAGTAAGAGTCATCCCAAGAATGCCAAACCAGTTCAGTTAATAGGAAATGCATCAATCA
2561 AATTAACAGTTTAAAGGAGAAGAATCATATGAACTCTCAACAGATACTGAGAAGGCATTTCATAGAATGTGTTAATTTAC
2641 ATTGTAATAGATGGGAACCACTTAAAGCGGTTTTTCTTAAAAAAAATTTTTTTTAACCCAAACCCCAAAGCATATATTAT
2721 GCCAAAGCCATTTTTTAAAATCAGGAATTCAATATTGGCTTAGAGATTCCAGTGAAGGCAATAAAAAGAAATGAATTGGT
2801 ATAAACAGCAGAAAAGGTAAAACTATCCATTTTTACTGATGATATGGTTGTACACCAATAAATGAAAAGACTATTTTTTG
2881 AGTTAACTTTTCTAAGAAGACAGGGTACCAAAATCAAGAGCTGTTCTCCATACTGACAAGAAAACATAATTTATATGTAC
2961 TTCTTTTGGAATTACACTAAATCTCAATGATTTTTTGACAATCATTGAAAAAAATATATGAAAAAAATCATACCATGTAT
3041 AAAAACATCACATGTACCCAATAAATATATACAACAATTATATATCTATAATAATTAAAAATTTTTAAAATGCCATGCTA
3121 GATACCAGAAGATAACATGAAGCCATTCTAATGAAATTAATATTGTATTGGCAAAGGAACAGGTAAATACATCATTAGAA
3201 CACAGTAGAAAATTCAGAAATAGACTTCGATATATATGAACTTTTTCATATGTGAAAAAGGTGAAATCTGAAACCACAGG
3281 GGAAAAGAGTAGTTTACTTAAAAAGAATTCTGGAACAGAACCTTTTAATCTTAAAGGAAGAAAATTTGGATTAACAGCAC
3361 AAAAATAAATTCTGGGTGGCTTTAAGACGTAAAATTTTAAAGCAACAGAATTCTTAAAAGAAAATCAAAGGAGCCTATGT
3441 GTACAATCTAGGAGTTGGGAGATATTAACTTTACCAACACAGGACACTCAGAAGCTATTTAGAAATAAGCAGTTGAAGGC
3521 TGGGTGCAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGAGGATCACCTGAGGTTAGGAGTTCAAG
3601 ACTAGTCTGGTCAACATGGTGAAACCCCATCTCCACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACATGCCTGTAG
3681 TCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGAAGGCAGGGGTTGAAGTGAGCTGAGATTGCACCA
3761 CTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAGAAAAAAAGAAAAAGAAAAAAAAAAGGAAACAAACATTTG
3841 ACTACGTAGAATCTTTTGGTACAATCTTTTGGGTGACAAAAGATGCCATCAGCAAACTCAAGAGATAATAGATTGTGGGG
3921 AAATATTTGTAAAGCTGATCAGAGAGAAGGCATTCATGAAATGGACAGGAAAAAAACCCAATAGCAAAATGTGGCAAAGA
4001 ATATGAGTTGACAGTTGTGAGAAGAGCAAATCTAAGTGGCCAATGGACCTGTCCAAAAATGTTTATCCTCAGTAGTCACT
4081 GGGGGATGCAGATTTAAAGTTAAAATCAAATAACACTGTGTAACAGCATTTTTAGCTATCAGAACAAAAGATGTTACACA
4161 CTGCTGGTGGAGAAATAAATTTTGAAAAACAATGCAAATTACTGTTTTGGAAAGAAATCTGGTAATATTTAGGCTGGGCG
4241 TGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGCAAATTGTCTGAGGTCGGGAGTTCGAGAACAGC
4321 CTGGCCAGCATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGCACCTGTGATCCCAG
4401 CTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCAC
4481 TCCAACCTGGGCAACAGAGCAAAAAGATTCCATCTCAAAAGAAAAGAAAAGAAATCTGTTAATATTATTAAAATATTTAT
4561 GTCACTTTGGAGAATCTTCCCTTAGAAGTAAAAGCTCCAATACATAAAAGACAGATGAACATGTGAACATGGACATTTAT
4641 TGTAAAAATTGTTCTTAATGGCAAAAAAACCCCCAAAACCAAAGCAAACACTAGAATCAAAGTAAATACCCATCAACTGG
4721 GAAATTGTAGAAAGGAAAAAACTATAGTGTATCCATTCCATAGAATGTTAATATAGCCATTAAGGTGGACAAATTAAAAC
4801 TATGCTAGTGGACTTGAGTGGAATTCCACAATGTTCTCTTGAGTGAAAAATGCAAGGTAGATATTAAGTATGTTAAATAT
4881 GACTCCATTTTTTTAAATCATTAACAAAATGTCTCTAGGTGTTTGTCAGCAATAAACGGTATCTATATATGTTTATTTGA
4961 TTTTATGTGCATGAAGAAAAGTATAGAAGAGTATGCATTGACTTGGAGGGAGGTGGGTAATGCAGGTAGGTTATGGGGGA
5041 GTCAGGGGTGTAGGGAAAAGGAAAACCAAAAAAGAAAAATACATAAATGACTGAATCACGGGTGATACCACAAATGTGTG
5121 AGTTAGTAAATTTGGCTGGGGATGGGGGAGCTAGAATTTTGCTAATTTGTGGGGATGTTCATGGTATATATTGTAAAAAG
5201 GGAAAATTTCATAATAATGTATACGATTCTATTTTTAAAAAAAGTAAAAACTCCTGTGTGTGTATATATGCATGTGGATG
5281 TTTATATGAACATAGAAAAGTGTAGAAGAATACACACGAAGGTGTTAACATTCATTGGTTACCTTGGTGGAGAAGGGTAA
5361 TAAGTTTTCTGAATACCTTTGCATTGTCTTGTTCACATATATTGCTTTTGTAATTTGAAAAACAAAATAAAGGGGGAAAA
5441 CATTTCAAACTGAATGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuuUCGUGAAGGUACAAUUUCa 5'
             ||| || ||| ||| ||| 
Target 5' ctcAGC-CTCCCAGGTTCAAGc 3'
 484 - 504 134.00 -9.90
2 
miRNA  3' cuuucGUGAAGGUACAAUUUca 5'
               |||| :  |||||||  
Target 5' tggccCACTAT--TGTTAAAag 3'
 1090 - 1109 133.00 -6.60
3 
miRNA  3' cuuUCGUG--AAGGUACAAUUUCa 5'
             || ||  ||: || |||||| 
Target 5' aacAGAACCTTTTAATCTTAAAGg 3'
 3314 - 3337 133.00 -6.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1215114 51 COSMIC
COSN18772875 51 COSMIC
COSN31931856 51 COSMIC
COSN1215116 56 COSMIC
COSN30531925 97 COSMIC
COSN28663915 115 COSMIC
COSN7126099 126 COSMIC
COSN6143803 227 COSMIC
COSN23114339 241 COSMIC
COSN4967778 259 COSMIC
COSN4967780 970 COSMIC
COSN23613791 1026 COSMIC
COSN7126100 1136 COSMIC
COSN15093846 1239 COSMIC
COSN17369384 1894 COSMIC
COSN25398706 2171 COSMIC
COSN6143804 2310 COSMIC
COSN15933101 2350 COSMIC
COSN19285807 2378 COSMIC
COSN29176259 2406 COSMIC
COSN17591334 2687 COSMIC
COSN16822461 2753 COSMIC
COSN5760300 2782 COSMIC
COSN15119238 2985 COSMIC
COSN7126101 3122 COSMIC
COSN1767617 3257 COSMIC
COSN17182204 3453 COSMIC
COSN4907218 3479 COSMIC
COSN17182211 3567 COSMIC
COSN26484508 3612 COSMIC
COSN5437747 3684 COSMIC
COSN23754532 3711 COSMIC
COSN4967782 3718 COSMIC
COSN22917807 3784 COSMIC
COSN17182199 3841 COSMIC
COSN17182205 3850 COSMIC
COSN17182206 3905 COSMIC
COSN9849920 4007 COSMIC
COSN9849921 4071 COSMIC
COSN28656636 4405 COSMIC
COSN31528191 4441 COSMIC
COSN18939754 4442 COSMIC
COSN31577159 4521 COSMIC
COSN31540362 4557 COSMIC
COSN31568364 4573 COSMIC
COSN28185353 4612 COSMIC
COSN13801770 4671 COSMIC
COSN7126102 4681 COSMIC
COSN7126103 4712 COSMIC
COSN31530254 4759 COSMIC
COSN30542442 4777 COSMIC
COSN17182212 4788 COSMIC
COSN17182207 4857 COSMIC
COSN25662507 4938 COSMIC
COSN21141618 4952 COSMIC
COSN4778138 5069 COSMIC
COSN27365926 5225 COSMIC
COSN16938885 5238 COSMIC
COSN4967784 5364 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1032345463 3 dbSNP
rs760983396 4 dbSNP
rs1420406688 7 dbSNP
rs1174849562 13 dbSNP
rs1395108956 25 dbSNP
rs1341925090 27 dbSNP
rs759877341 31 dbSNP
rs1468176919 33 dbSNP
rs369737171 33 dbSNP
rs751222584 33 dbSNP
rs756900746 33 dbSNP
rs780658939 33 dbSNP
rs892081423 33 dbSNP
rs1436056894 34 dbSNP
rs76868510 36 dbSNP
rs1269059168 40 dbSNP
rs1218019374 41 dbSNP
rs1315271670 51 dbSNP
rs1021031658 52 dbSNP
rs1173174402 53 dbSNP
rs1373582333 56 dbSNP
rs1374238029 57 dbSNP
rs1440682653 60 dbSNP
rs1393250779 65 dbSNP
rs1289147816 68 dbSNP
rs966439695 70 dbSNP
rs372339543 73 dbSNP
rs554444390 74 dbSNP
rs540520346 79 dbSNP
rs1330218348 80 dbSNP
rs149389958 85 dbSNP
rs1029859250 86 dbSNP
rs905021267 87 dbSNP
rs1453631458 90 dbSNP
rs144727279 94 dbSNP
rs985892378 95 dbSNP
rs534546100 96 dbSNP
rs963378075 97 dbSNP
rs544377578 102 dbSNP
rs1056179090 103 dbSNP
rs1234006103 106 dbSNP
rs148457624 107 dbSNP
rs929280845 110 dbSNP
rs1470039002 112 dbSNP
rs1212207931 119 dbSNP
rs1287746711 124 dbSNP
rs776711901 126 dbSNP
rs992604106 126 dbSNP
rs12972657 127 dbSNP
rs1433794316 128 dbSNP
rs574193690 134 dbSNP
rs560534069 135 dbSNP
rs904495951 143 dbSNP
rs935991781 144 dbSNP
rs1426185725 158 dbSNP
rs1053164457 159 dbSNP
rs1486729293 163 dbSNP
rs1418101201 165 dbSNP
rs892023081 170 dbSNP
rs528015150 171 dbSNP
rs1162354255 178 dbSNP
rs1225744188 180 dbSNP
rs1305374302 181 dbSNP
rs1349029390 182 dbSNP
rs376366048 183 dbSNP
rs777047649 185 dbSNP
rs1310931596 187 dbSNP
rs1359843606 188 dbSNP
rs867306699 189 dbSNP
rs368875781 190 dbSNP
rs748479331 192 dbSNP
rs538070272 194 dbSNP
rs549929230 195 dbSNP
rs1166012023 196 dbSNP
rs963195643 198 dbSNP
rs1194418720 200 dbSNP
rs1438934704 200 dbSNP
rs369363940 200 dbSNP
rs376288863 200 dbSNP
rs549118812 200 dbSNP
rs71177465 200 dbSNP
rs1317858869 204 dbSNP
rs983446546 211 dbSNP
rs1259462229 213 dbSNP
rs1336230450 217 dbSNP
rs1394525409 220 dbSNP
rs1243483006 221 dbSNP
rs1336257507 222 dbSNP
rs1309133147 223 dbSNP
rs1389459196 224 dbSNP
rs1488280849 225 dbSNP
rs191696655 227 dbSNP
rs183843667 228 dbSNP
rs973951825 229 dbSNP
rs372115588 230 dbSNP
rs1470584406 231 dbSNP
rs1185282578 234 dbSNP
rs1366052947 236 dbSNP
rs950680196 237 dbSNP
rs189009759 238 dbSNP
rs12972887 239 dbSNP
rs1350847280 240 dbSNP
rs1262352003 241 dbSNP
rs533515247 242 dbSNP
rs555640532 243 dbSNP
rs372744419 244 dbSNP
rs1343362044 246 dbSNP
rs544450615 248 dbSNP
rs1418950735 249 dbSNP
rs1313426821 250 dbSNP
rs562648622 251 dbSNP
rs751665012 253 dbSNP
rs926027367 254 dbSNP
rs578176487 255 dbSNP
rs545473392 258 dbSNP
rs560342328 259 dbSNP
rs1352860984 260 dbSNP
rs934209059 260 dbSNP
rs1236209828 261 dbSNP
rs1281018323 261 dbSNP
rs1345471214 262 dbSNP
rs549079702 265 dbSNP
rs1328232806 267 dbSNP
rs1051350231 268 dbSNP
rs561262217 270 dbSNP
rs1376580410 272 dbSNP
rs192851002 272 dbSNP
rs370077541 272 dbSNP
rs950851310 273 dbSNP
rs549990966 274 dbSNP
rs185807394 279 dbSNP
rs1038589818 280 dbSNP
rs1243532303 281 dbSNP
rs539201465 283 dbSNP
rs184056548 284 dbSNP
rs572498900 288 dbSNP
rs959485880 289 dbSNP
rs543166729 290 dbSNP
rs1405452749 291 dbSNP
rs190314145 294 dbSNP
rs574010164 297 dbSNP
rs1268698648 298 dbSNP
rs1218087065 300 dbSNP
rs1356182725 302 dbSNP
rs945182350 305 dbSNP
rs538132957 306 dbSNP
rs1174144665 308 dbSNP
rs1024166224 310 dbSNP
rs969987276 314 dbSNP
rs1412048997 315 dbSNP
rs979886982 316 dbSNP
rs5020265 317 dbSNP
rs1333656123 318 dbSNP
rs1355327415 319 dbSNP
rs1444546010 320 dbSNP
rs957654882 321 dbSNP
rs988930257 322 dbSNP
rs998156069 324 dbSNP
rs913185420 325 dbSNP
rs577920872 326 dbSNP
rs375011080 327 dbSNP
rs560657294 328 dbSNP
rs942958161 329 dbSNP
rs959347918 330 dbSNP
rs1038932790 331 dbSNP
rs113524934 332 dbSNP
rs1166436928 333 dbSNP
rs994954061 336 dbSNP
rs1047480051 337 dbSNP
rs886221241 340 dbSNP
rs977845823 344 dbSNP
rs1230986654 364 dbSNP
rs1178219186 367 dbSNP
rs924993702 368 dbSNP
rs1277213237 372 dbSNP
rs936338573 374 dbSNP
rs1013870521 376 dbSNP
rs1206126308 380 dbSNP
rs1211888917 382 dbSNP
rs1321272663 386 dbSNP
rs1285494500 392 dbSNP
rs1225996851 394 dbSNP
rs974427663 395 dbSNP
rs1236015883 399 dbSNP
rs1457133624 417 dbSNP
rs1023948461 435 dbSNP
rs969934957 438 dbSNP
rs1371260269 439 dbSNP
rs543042709 441 dbSNP
rs552010678 442 dbSNP
rs1052442969 446 dbSNP
rs1348810198 452 dbSNP
rs1159684921 453 dbSNP
rs1033235025 454 dbSNP
rs1420238673 455 dbSNP
rs1411750874 456 dbSNP
rs868845508 459 dbSNP
rs1255124903 463 dbSNP
rs1189703229 464 dbSNP
rs1488168176 465 dbSNP
rs1242804182 466 dbSNP
rs989268808 471 dbSNP
rs530261861 472 dbSNP
rs143463991 481 dbSNP
rs899280076 486 dbSNP
rs548699260 488 dbSNP
rs1271311121 495 dbSNP
rs911256682 497 dbSNP
rs560500061 501 dbSNP
rs1358480063 503 dbSNP
rs1157973426 505 dbSNP
rs1435096097 506 dbSNP
rs1339430023 507 dbSNP
rs1034348918 517 dbSNP
rs1215861835 520 dbSNP
rs1255741347 528 dbSNP
rs942902909 529 dbSNP
rs1487352738 535 dbSNP
rs1214085018 540 dbSNP
rs1254573359 542 dbSNP
rs1486845128 543 dbSNP
rs974371095 544 dbSNP
rs1278687295 545 dbSNP
rs1233022821 546 dbSNP
rs1311198263 547 dbSNP
rs1013508409 548 dbSNP
rs1449664919 548 dbSNP
rs532744753 549 dbSNP
rs930150076 550 dbSNP
rs1047716008 551 dbSNP
rs1242663423 551 dbSNP
rs974481747 551 dbSNP
rs1355268696 552 dbSNP
rs1172893244 554 dbSNP
rs1476414865 555 dbSNP
rs1423069858 556 dbSNP
rs547650718 559 dbSNP
rs1037825409 560 dbSNP
rs1045342828 563 dbSNP
rs905554545 564 dbSNP
rs369352759 565 dbSNP
rs181043897 566 dbSNP
rs1276978055 569 dbSNP
rs1319523828 585 dbSNP
rs371706598 587 dbSNP
rs184324807 591 dbSNP
rs549043871 592 dbSNP
rs1397020248 594 dbSNP
rs1275826373 595 dbSNP
rs893077977 601 dbSNP
rs1464299848 609 dbSNP
rs1010068964 610 dbSNP
rs1165683629 611 dbSNP
rs1463090683 611 dbSNP
rs1020562296 614 dbSNP
rs955431395 615 dbSNP
rs986896759 617 dbSNP
rs1420032224 618 dbSNP
rs1253159528 622 dbSNP
rs1017273086 623 dbSNP
rs1233454701 629 dbSNP
rs1274684822 631 dbSNP
rs1456139022 632 dbSNP
rs1018266251 636 dbSNP
rs567259438 640 dbSNP
rs527672169 641 dbSNP
rs1263597658 651 dbSNP
rs1014643975 653 dbSNP
rs1448733676 654 dbSNP
rs920185010 655 dbSNP
rs1262497202 657 dbSNP
rs1024909292 660 dbSNP
rs372863287 661 dbSNP
rs1388735299 662 dbSNP
rs1163160256 664 dbSNP
rs1454729777 664 dbSNP
rs10402827 667 dbSNP
rs1032209289 668 dbSNP
rs1439479418 668 dbSNP
rs982957774 669 dbSNP
rs1193939507 672 dbSNP
rs773897244 674 dbSNP
rs538841497 675 dbSNP
rs1159570501 677 dbSNP
rs1387769300 679 dbSNP
rs1029124406 688 dbSNP
rs1438931460 689 dbSNP
rs867804535 692 dbSNP
rs1329602692 693 dbSNP
rs1322922633 695 dbSNP
rs1382863656 696 dbSNP
rs146673311 697 dbSNP
rs1296962131 700 dbSNP
rs1045458343 703 dbSNP
rs1339210303 710 dbSNP
rs1414900214 711 dbSNP
rs1294710651 712 dbSNP
rs1396117791 714 dbSNP
rs140088278 718 dbSNP
rs4803214 719 dbSNP
rs2385126 720 dbSNP
rs907522285 721 dbSNP
rs893034949 728 dbSNP
rs574873852 729 dbSNP
rs1487824424 739 dbSNP
rs1280827101 740 dbSNP
rs1220764678 743 dbSNP
rs973624670 754 dbSNP
rs1020103920 756 dbSNP
rs920768654 760 dbSNP
rs890984785 763 dbSNP
rs1342516086 764 dbSNP
rs1276834114 769 dbSNP
rs576040304 769 dbSNP
rs1376625945 770 dbSNP
rs543368492 780 dbSNP
rs1336503542 791 dbSNP
rs1413132571 796 dbSNP
rs1008278954 801 dbSNP
rs565261950 809 dbSNP
rs1399528622 813 dbSNP
rs1055898902 824 dbSNP
rs761226060 829 dbSNP
rs1254326057 830 dbSNP
rs112601592 840 dbSNP
rs1182799798 842 dbSNP
rs188091228 858 dbSNP
rs1477428891 862 dbSNP
rs1365847867 866 dbSNP
rs1211898272 867 dbSNP
rs559685641 876 dbSNP
rs995499115 883 dbSNP
rs1158527241 892 dbSNP
rs1376635364 902 dbSNP
rs1434774420 904 dbSNP
rs1027428582 907 dbSNP
rs999481859 908 dbSNP
rs1356597139 936 dbSNP
rs1286472050 946 dbSNP
rs951633422 947 dbSNP
rs1446271733 949 dbSNP
rs1053663304 960 dbSNP
rs144924173 971 dbSNP
rs893651607 983 dbSNP
rs996383412 984 dbSNP
rs1399603832 990 dbSNP
rs918045827 997 dbSNP
rs1402057150 1000 dbSNP
rs970878795 1003 dbSNP
rs980941474 1010 dbSNP
rs549107269 1013 dbSNP
rs1015044369 1028 dbSNP
rs1183590637 1032 dbSNP
rs148987520 1035 dbSNP
rs961651952 1036 dbSNP
rs1378787439 1040 dbSNP
rs973634531 1041 dbSNP
rs937110401 1042 dbSNP
rs1198013292 1045 dbSNP
rs1308419301 1046 dbSNP
rs1348580775 1049 dbSNP
rs1054116975 1050 dbSNP
rs1227153184 1055 dbSNP
rs1356046752 1068 dbSNP
rs1280459088 1072 dbSNP
rs1449487291 1072 dbSNP
rs11881806 1080 dbSNP
rs775870677 1080 dbSNP
rs753901089 1083 dbSNP
rs1041661512 1085 dbSNP
rs571551520 1086 dbSNP
rs1403497225 1090 dbSNP
rs917408677 1096 dbSNP
rs775801609 1100 dbSNP
rs1008059977 1101 dbSNP
rs1236574897 1104 dbSNP
rs1196551610 1110 dbSNP
rs1178320014 1119 dbSNP
rs1468946607 1123 dbSNP
rs1248567351 1127 dbSNP
rs1039579353 1128 dbSNP
rs1252962866 1132 dbSNP
rs899898390 1133 dbSNP
rs1178462667 1136 dbSNP
rs1242767603 1139 dbSNP
rs950212000 1140 dbSNP
rs1306605384 1147 dbSNP
rs1041799635 1149 dbSNP
rs996009404 1150 dbSNP
rs1294725047 1159 dbSNP
rs538536043 1160 dbSNP
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rs138465907 1167 dbSNP
rs951461313 1168 dbSNP
rs1465136999 1175 dbSNP
rs550308481 1180 dbSNP
rs1378302579 1181 dbSNP
rs893751534 1183 dbSNP
rs1433941829 1189 dbSNP
rs1427550094 1196 dbSNP
rs996094786 1198 dbSNP
rs1488238484 1204 dbSNP
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rs1264516378 1212 dbSNP
rs1219499981 1213 dbSNP
rs2199644 1223 dbSNP
rs1285706959 1224 dbSNP
rs1212076606 1230 dbSNP
rs1330508226 1240 dbSNP
rs1312354054 1251 dbSNP
rs1302959628 1253 dbSNP
rs536003450 1258 dbSNP
rs554648112 1260 dbSNP
rs745797582 1263 dbSNP
rs1388382823 1265 dbSNP
rs1299128354 1272 dbSNP
rs980887647 1284 dbSNP
rs767276488 1289 dbSNP
rs1009067327 1315 dbSNP
rs1297298337 1321 dbSNP
rs1466370160 1321 dbSNP
rs1228291214 1325 dbSNP
rs1174296803 1326 dbSNP
rs1253268317 1328 dbSNP
rs926823712 1330 dbSNP
rs1432651547 1334 dbSNP
rs1014594245 1336 dbSNP
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rs1198403936 1345 dbSNP
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rs958454882 1351 dbSNP
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rs1201323408 1360 dbSNP
rs1470125469 1362 dbSNP
rs1484480507 1364 dbSNP
rs914205490 1367 dbSNP
rs142658313 1374 dbSNP
rs547100549 1377 dbSNP
rs543430077 1385 dbSNP
rs958974463 1391 dbSNP
rs558515448 1399 dbSNP
rs1041441391 1400 dbSNP
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rs1039527053 1417 dbSNP
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rs185568728 1449 dbSNP
rs1024931648 1450 dbSNP
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rs1188919605 1458 dbSNP
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rs1254560559 1465 dbSNP
rs1181668316 1468 dbSNP
rs779868626 1469 dbSNP
rs936005131 1470 dbSNP
rs181679208 1474 dbSNP
rs1382834430 1483 dbSNP
rs1199905350 1484 dbSNP
rs2385125 1485 dbSNP
rs887234279 1491 dbSNP
rs1004167904 1495 dbSNP
rs549830722 1504 dbSNP
rs115863855 1507 dbSNP
rs750570553 1512 dbSNP
rs1377843069 1514 dbSNP
rs1333699345 1516 dbSNP
rs1036091196 1518 dbSNP
rs187649798 1522 dbSNP
rs1459858665 1525 dbSNP
rs897605051 1538 dbSNP
rs1164446202 1541 dbSNP
rs1486519367 1547 dbSNP
rs1027308586 1548 dbSNP
rs994530673 1548 dbSNP
rs1002426172 1562 dbSNP
rs34326494 1566 dbSNP
rs1249168034 1568 dbSNP
rs768082892 1583 dbSNP
rs958451612 1586 dbSNP
rs773957622 1587 dbSNP
rs1263616975 1588 dbSNP
rs1013586380 1589 dbSNP
rs1354220546 1594 dbSNP
rs1311709872 1605 dbSNP
rs1238297515 1608 dbSNP
rs1192426958 1613 dbSNP
rs1324226602 1614 dbSNP
rs1418169531 1616 dbSNP
rs1425309047 1620 dbSNP
rs1389118312 1630 dbSNP
rs1024525491 1632 dbSNP
rs1349221128 1641 dbSNP
rs1454188636 1642 dbSNP
rs1299976909 1645 dbSNP
rs573407758 1648 dbSNP
rs1437387874 1657 dbSNP
rs1038085 1661 dbSNP
rs565921982 1663 dbSNP
rs1294114453 1668 dbSNP
rs1031824548 1674 dbSNP
rs1488475633 1675 dbSNP
rs977069332 1677 dbSNP
rs957476386 1682 dbSNP
rs990232021 1711 dbSNP
rs1212650874 1716 dbSNP
rs1350147477 1724 dbSNP
rs1275664060 1731 dbSNP
rs912242356 1757 dbSNP
rs536065268 1762 dbSNP
rs943912030 1764 dbSNP
rs576229380 1767 dbSNP
rs975330069 1773 dbSNP
rs1283172007 1788 dbSNP
rs1401105785 1791 dbSNP
rs1363032589 1797 dbSNP
rs1296674846 1798 dbSNP
rs1419486755 1804 dbSNP
rs1383787934 1811 dbSNP
rs74808464 1819 dbSNP
rs1467109390 1823 dbSNP
rs1375465780 1824 dbSNP
rs932636337 1826 dbSNP
rs986467302 1828 dbSNP
rs1284537785 1829 dbSNP
rs921071578 1830 dbSNP
rs931131780 1832 dbSNP
rs1215319511 1837 dbSNP
rs773630764 1841 dbSNP
rs1446276654 1844 dbSNP
rs1279581245 1846 dbSNP
rs1237680174 1848 dbSNP
rs1343181095 1856 dbSNP
rs1048264509 1858 dbSNP
rs1262537863 1867 dbSNP
rs887173551 1870 dbSNP
rs940138035 1871 dbSNP
rs1342860242 1878 dbSNP
rs1179758874 1881 dbSNP
rs1412730354 1885 dbSNP
rs569852750 1890 dbSNP
rs537141396 1895 dbSNP
rs944604809 1896 dbSNP
rs761043858 1897 dbSNP
rs1038084 1902 dbSNP
rs1378459877 1904 dbSNP
rs1034358000 1905 dbSNP
rs558580274 1913 dbSNP
rs1011471670 1922 dbSNP
rs112070049 1925 dbSNP
rs967089759 1929 dbSNP
rs977185368 1939 dbSNP
rs12984698 1940 dbSNP
rs1474943765 1941 dbSNP
rs1237801565 1952 dbSNP
rs965049588 1967 dbSNP
rs1440855610 1973 dbSNP
rs1242765721 1977 dbSNP
rs1199347191 1982 dbSNP
rs975140574 1983 dbSNP
rs1374455152 1993 dbSNP
rs191955872 2004 dbSNP
rs150851670 2005 dbSNP
rs1256694001 2008 dbSNP
rs907474939 2013 dbSNP
rs1353690969 2019 dbSNP
rs999101153 2023 dbSNP
rs931269677 2025 dbSNP
rs183869563 2029 dbSNP
rs1031883415 2035 dbSNP
rs113098429 2038 dbSNP
rs1380029815 2041 dbSNP
rs186696016 2049 dbSNP
rs908397946 2051 dbSNP
rs1446862081 2061 dbSNP
rs940086955 2069 dbSNP
rs542475254 2078 dbSNP
rs750742761 2079 dbSNP
rs117695292 2085 dbSNP
rs906512149 2091 dbSNP
rs189593236 2104 dbSNP
rs1164716077 2111 dbSNP
rs1236577842 2118 dbSNP
rs1471726777 2119 dbSNP
rs1384831100 2120 dbSNP
rs1179551635 2122 dbSNP
rs1459124323 2124 dbSNP
rs1236387711 2132 dbSNP
rs543534425 2133 dbSNP
rs912542556 2139 dbSNP
rs564954663 2140 dbSNP
rs532016326 2142 dbSNP
rs2126976 2153 dbSNP
rs1011168868 2154 dbSNP
rs1359241800 2162 dbSNP
rs1438939056 2163 dbSNP
rs1174203635 2168 dbSNP
rs1042925489 2170 dbSNP
rs559405175 2171 dbSNP
rs1295891459 2180 dbSNP
rs796647766 2185 dbSNP
rs1175592777 2194 dbSNP
rs529925730 2200 dbSNP
rs778143292 2201 dbSNP
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rs569502422 2206 dbSNP
rs1329816921 2211 dbSNP
rs1441723755 2215 dbSNP
rs1019366256 2223 dbSNP
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rs1406077941 2241 dbSNP
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rs1220064253 2256 dbSNP
rs1277142809 2257 dbSNP
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rs536807520 2265 dbSNP
rs1277460369 2284 dbSNP
rs4803215 2287 dbSNP
rs952709929 2300 dbSNP
rs1053331606 2310 dbSNP
rs62111486 2315 dbSNP
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rs908346084 2331 dbSNP
rs1276513737 2332 dbSNP
rs534722310 2335 dbSNP
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rs954186107 2376 dbSNP
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rs369259817 2387 dbSNP
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rs1467318989 2391 dbSNP
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rs1424953891 2397 dbSNP
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rs540695785 2687 dbSNP
rs970262200 2688 dbSNP
rs1296766885 2695 dbSNP
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rs1356203216 2995 dbSNP
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rs1452096410 3412 dbSNP
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rs895093613 3671 dbSNP
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rs1290113572 3703 dbSNP
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rs1411122717 3722 dbSNP
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rs1197917565 3761 dbSNP
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rs1203450271 3797 dbSNP
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rs1313809441 3810 dbSNP
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rs978190547 3826 dbSNP
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rs1043316579 3857 dbSNP
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rs1007055283 3865 dbSNP
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rs1225673281 3891 dbSNP
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rs1337477447 4092 dbSNP
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rs895048774 4115 dbSNP
rs1195920938 4117 dbSNP
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rs1231738004 4159 dbSNP
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rs1381754557 4173 dbSNP
rs988170004 4176 dbSNP
rs1224200037 4182 dbSNP
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rs1355126194 4185 dbSNP
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rs1314640543 4200 dbSNP
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rs1286435241 4215 dbSNP
rs1227523606 4234 dbSNP
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rs796619353 4240 dbSNP
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rs1031086120 4302 dbSNP
rs184273015 4304 dbSNP
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rs1365269560 4312 dbSNP
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rs1217334187 4321 dbSNP
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rs775647073 4343 dbSNP
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rs1207023820 4372 dbSNP
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rs1269719809 4499 dbSNP
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rs1006221967 4510 dbSNP
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rs755656638 4517 dbSNP
rs1173003034 4518 dbSNP
rs1334535966 4523 dbSNP
rs1380035401 4527 dbSNP
rs903807740 4532 dbSNP
rs1275584387 4534 dbSNP
rs999357766 4537 dbSNP
rs1193136325 4548 dbSNP
rs1258149577 4551 dbSNP
rs752682896 4560 dbSNP
rs1052292410 4561 dbSNP
rs564179562 4563 dbSNP
rs980988278 4566 dbSNP
rs1207044398 4568 dbSNP
rs1187837239 4571 dbSNP
rs545082582 4576 dbSNP
rs1246763610 4580 dbSNP
rs1361627703 4586 dbSNP
rs998024962 4589 dbSNP
rs1395896426 4596 dbSNP
rs867060561 4597 dbSNP
rs1374695350 4606 dbSNP
rs1165448781 4610 dbSNP
rs960817333 4613 dbSNP
rs1396560975 4616 dbSNP
rs1368288617 4617 dbSNP
rs1167622596 4621 dbSNP
rs1424939909 4627 dbSNP
rs1369645372 4629 dbSNP
rs1455542703 4630 dbSNP
rs988222206 4635 dbSNP
rs1317588415 4636 dbSNP
rs1345804526 4641 dbSNP
rs1408715745 4662 dbSNP
rs1354530045 4663 dbSNP
rs913907642 4667 dbSNP
rs188644740 4671 dbSNP
rs953509139 4675 dbSNP
rs1223440263 4677 dbSNP
rs1489595282 4682 dbSNP
rs1263686442 4713 dbSNP
rs1244235535 4723 dbSNP
rs58208767 4724 dbSNP
rs1309841552 4726 dbSNP
rs1457832855 4729 dbSNP
rs1226912542 4731 dbSNP
rs1369129084 4737 dbSNP
rs1350214893 4745 dbSNP
rs775932529 4745 dbSNP
rs1221261277 4746 dbSNP
rs925915277 4747 dbSNP
rs749635623 4748 dbSNP
rs1282287314 4756 dbSNP
rs1457022891 4760 dbSNP
rs1364289966 4761 dbSNP
rs1161234459 4766 dbSNP
rs529383075 4774 dbSNP
rs1410877042 4784 dbSNP
rs962292611 4804 dbSNP
rs942599659 4806 dbSNP
rs1270786983 4807 dbSNP
rs972191849 4810 dbSNP
rs1265602193 4815 dbSNP
rs1039573185 4833 dbSNP
rs1486256092 4836 dbSNP
rs1207337458 4844 dbSNP
rs1437090637 4854 dbSNP
rs922435405 4859 dbSNP
rs1222232081 4865 dbSNP
rs139536262 4871 dbSNP
rs1235976130 4888 dbSNP
rs4803216 4894 dbSNP
rs1298802751 4895 dbSNP
rs1046763129 4900 dbSNP
rs1384989553 4902 dbSNP
rs73931002 4906 dbSNP
rs552063486 4911 dbSNP
rs1455511416 4919 dbSNP
rs1387900471 4922 dbSNP
rs1198935985 4927 dbSNP
rs1176865093 4935 dbSNP
rs916215943 4938 dbSNP
rs947704956 4939 dbSNP
rs1424671783 4947 dbSNP
rs766135444 4952 dbSNP
rs1249918249 4965 dbSNP
rs1186764521 4966 dbSNP
rs925173754 4972 dbSNP
rs1264370797 4973 dbSNP
rs1202523349 4974 dbSNP
rs1419259137 4977 dbSNP
rs144283741 4984 dbSNP
rs534428007 4985 dbSNP
rs1232003640 4990 dbSNP
rs1326147044 4998 dbSNP
rs905474301 4999 dbSNP
rs754936101 5023 dbSNP
rs1351082724 5025 dbSNP
rs549146480 5026 dbSNP
rs1402612597 5031 dbSNP
rs1302132687 5035 dbSNP
rs567850382 5037 dbSNP
rs1432329622 5041 dbSNP
rs1002862514 5042 dbSNP
rs1052241613 5049 dbSNP
rs535168844 5051 dbSNP
rs1171799745 5054 dbSNP
rs576762991 5054 dbSNP
rs901677054 5055 dbSNP
rs1392332976 5056 dbSNP
rs556587118 5084 dbSNP
rs1050930067 5092 dbSNP
rs373508875 5093 dbSNP
rs575198595 5097 dbSNP
rs1006615664 5100 dbSNP
rs747610345 5101 dbSNP
rs1228780603 5109 dbSNP
rs1196810362 5114 dbSNP
rs1342412894 5117 dbSNP
rs1291992969 5120 dbSNP
rs1489874892 5121 dbSNP
rs1221919356 5122 dbSNP
rs1340791381 5140 dbSNP
rs910534420 5141 dbSNP
rs2291002 5146 dbSNP
rs1191324682 5152 dbSNP
rs182189610 5168 dbSNP
rs1372824887 5170 dbSNP
rs1333261144 5177 dbSNP
rs1410270785 5183 dbSNP
rs898052792 5209 dbSNP
rs975694985 5211 dbSNP
rs1306448266 5216 dbSNP
rs922446610 5219 dbSNP
rs1473352386 5222 dbSNP
rs993729220 5225 dbSNP
rs1165079075 5226 dbSNP
rs573024779 5238 dbSNP
rs1422207232 5251 dbSNP
rs1162300091 5252 dbSNP
rs1182950348 5255 dbSNP
rs1484262474 5261 dbSNP
rs1250100857 5263 dbSNP
rs1202523556 5270 dbSNP
rs1360619860 5271 dbSNP
rs1301767740 5274 dbSNP
rs972981108 5281 dbSNP
rs746689238 5288 dbSNP
rs991707221 5292 dbSNP
rs1023804595 5293 dbSNP
rs969191225 5299 dbSNP
rs147731631 5302 dbSNP
rs924956093 5304 dbSNP
rs561847668 5306 dbSNP
rs776931413 5307 dbSNP
rs988062019 5308 dbSNP
rs4803220 5309 dbSNP
rs753611587 5309 dbSNP
rs933145066 5318 dbSNP
rs746250851 5330 dbSNP
rs889185045 5331 dbSNP
rs1357278218 5334 dbSNP
rs1403723012 5339 dbSNP
rs942139442 5343 dbSNP
rs1160497758 5348 dbSNP
rs1037641808 5358 dbSNP
rs897832497 5378 dbSNP
rs896669789 5383 dbSNP
rs142529330 5385 dbSNP
rs1009762142 5386 dbSNP
rs1021121119 5387 dbSNP
rs993676990 5390 dbSNP
rs1288565347 5399 dbSNP
rs1209225351 5400 dbSNP
rs767764924 5406 dbSNP
rs770369352 5414 dbSNP
rs186769987 5415 dbSNP
rs1227620630 5423 dbSNP
rs1368544015 5431 dbSNP
rs776160048 5433 dbSNP
rs896110123 5439 dbSNP
rs1001354950 5441 dbSNP
rs1434617834 5442 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 390927.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 390927.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000445217.1 | 3UTR | CUAUCUUUUAAAGAAAGAGUAAUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000445217.1 | 3UTR | CUUUUAAAGAAAGAGUAAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.729 2.3e-3 0.659 7.1e-3 13 Click to see details
GSE14794 Lymphoblastoid cells 0.204 2.7e-2 0.216 2.0e-2 90 Click to see details
GSE21687 Ependynoma primary tumors -0.221 4.0e-2 -0.137 1.4e-1 64 Click to see details
GSE38226 Liver fibrosis -0.345 6.3e-2 -0.075 3.7e-1 21 Click to see details
GSE27834 Pluripotent stem cells 0.398 6.3e-2 0.659 2.7e-3 16 Click to see details
GSE28544 Breast cancer -0.168 2.2e-1 -0.194 1.8e-1 24 Click to see details
GSE17306 Multiple myeloma 0.099 2.5e-1 0.399 2.3e-3 49 Click to see details
GSE19350 CNS germ cell tumors -0.127 3.5e-1 0.273 2.0e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.042 4.1e-1 0.036 4.2e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.019 4.6e-1 -0.163 2.2e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
109 hsa-miR-302b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088427 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT142406 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT162006 TFRC transferrin receptor 2 2
MIRT170893 PURB purine rich element binding protein B 2 2
MIRT203348 CCNT2 cyclin T2 2 4
MIRT207353 TGOLN2 trans-golgi network protein 2 2 2
MIRT208232 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT214733 HSPA9 heat shock protein family A (Hsp70) member 9 2 2
MIRT254842 NUP50 nucleoporin 50 2 2
MIRT257285 FOXC1 forkhead box C1 2 2
MIRT338890 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT400032 USP37 ubiquitin specific peptidase 37 2 2
MIRT404031 ATP9A ATPase phospholipid transporting 9A (putative) 2 8
MIRT405843 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 2
MIRT445847 FPGT fucose-1-phosphate guanylyltransferase 2 2
MIRT446350 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446649 BTBD7 BTB domain containing 7 2 2
MIRT447925 SCRN1 secernin 1 2 2
MIRT448575 PLCG1 phospholipase C gamma 1 2 2
MIRT463616 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT465782 TMOD3 tropomodulin 3 2 2
MIRT470261 PRR14L proline rich 14 like 2 2
MIRT471090 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT475612 HMGB1 high mobility group box 1 2 2
MIRT476824 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT483107 TYRP1 tyrosinase related protein 1 2 10
MIRT500537 XPO4 exportin 4 2 2
MIRT502525 EPHA2 EPH receptor A2 2 4
MIRT510989 PER1 period circadian clock 1 2 4
MIRT512540 ZNF793 zinc finger protein 793 2 4
MIRT513868 HOXA5 homeobox A5 2 2
MIRT520756 TFDP1 transcription factor Dp-1 2 6
MIRT524304 CTC1 CST telomere replication complex component 1 2 8
MIRT526306 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526378 LSAMP limbic system-associated membrane protein 2 2
MIRT527438 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527511 ZNF134 zinc finger protein 134 2 2
MIRT528068 HES2 hes family bHLH transcription factor 2 2 2
MIRT528367 ZMYM1 zinc finger MYM-type containing 1 2 4
MIRT531804 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT532323 DUSP4 dual specificity phosphatase 4 2 2
MIRT532431 DHX33 DEAH-box helicase 33 2 2
MIRT534523 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT536660 INIP INTS3 and NABP interacting protein 2 2
MIRT538488 CLOCK clock circadian regulator 2 2
MIRT538593 CDK6 cyclin dependent kinase 6 2 2
MIRT539706 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540306 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT546892 PURA purine rich element binding protein A 2 2
MIRT552738 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552781 YIPF6 Yip1 domain family member 6 2 2
MIRT553742 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 4
MIRT553909 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT554540 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT555319 PPP2CB protein phosphatase 2 catalytic subunit beta 2 2
MIRT555512 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT556221 MB21D2 Mab-21 domain containing 2 2 2
MIRT556292 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT556606 LDOC1L retrotransposon Gag like 6 2 4
MIRT556901 ISOC1 isochorismatase domain containing 1 2 2
MIRT557675 GATA6 GATA binding protein 6 2 2
MIRT560198 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT560493 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT566069 RCC2 regulator of chromosome condensation 2 2 2
MIRT568431 GDNF glial cell derived neurotrophic factor 2 2
MIRT570703 FAM69A family with sequence similarity 69 member A 2 2
MIRT571705 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough 2 2
MIRT573152 ITGA9 integrin subunit alpha 9 2 2
MIRT574410 TFAP2A transcription factor AP-2 alpha 2 2
MIRT614823 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616507 COX7A2L cytochrome c oxidase subunit 7A2 like 2 2
MIRT618301 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT621188 FAM153B family with sequence similarity 153 member B 2 2
MIRT621594 WT1 Wilms tumor 1 2 2
MIRT623814 GGCX gamma-glutamyl carboxylase 2 2
MIRT624407 CCDC171 coiled-coil domain containing 171 2 2
MIRT625136 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT626121 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626874 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627874 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT633670 FAM53B family with sequence similarity 53 member B 2 2
MIRT634285 SYAP1 synapse associated protein 1 2 2
MIRT640925 POU2F1 POU class 2 homeobox 1 2 2
MIRT642028 MYADM myeloid associated differentiation marker 2 2
MIRT643031 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT646122 SLC26A9 solute carrier family 26 member 9 2 2
MIRT646245 SNAP47 synaptosome associated protein 47 2 2
MIRT652457 TMEM2 transmembrane protein 2 2 2
MIRT657018 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT660586 APP amyloid beta precursor protein 2 2
MIRT664316 CD209 CD209 molecule 2 2
MIRT667113 OLA1 Obg like ATPase 1 2 2
MIRT668773 DCP2 decapping mRNA 2 2 2
MIRT698430 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT700216 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT710498 CAPRIN1 cell cycle associated protein 1 2 2
MIRT711836 AMOTL2 angiomotin like 2 2 2
MIRT713226 GPR75 G protein-coupled receptor 75 2 2
MIRT714415 TBC1D16 TBC1 domain family member 16 2 2
MIRT714490 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT715254 F9 coagulation factor IX 2 2
MIRT716250 PALM2 paralemmin 2 2 2
MIRT717261 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT717730 FGF1 fibroblast growth factor 1 2 2
MIRT719262 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719398 SLC15A4 solute carrier family 15 member 4 2 2
MIRT720653 TMEM218 transmembrane protein 218 2 2
MIRT720777 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722059 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-302b Epirubicin approved 41867 Microarray osteosarcoma cells 23845851 2013 down-regualted
miR-302b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 up-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-302b (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-302b Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-302b-5p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-302b-5p Celastrol 12302620 NSC70931 sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Docetaxel 148124 NSC628503 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Doxorubicin 31703 NSC123127 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Taxol 36314 NSC125973 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-302b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-302b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-302b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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