pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SEZ6L   
Synonyms -
Description seizure related 6 homolog like
Transcript NM_001184773   
Other Transcripts NM_001184774 , NM_001184775 , NM_001184776 , NM_001184777 , NM_021115   
Expression
Putative miRNA Targets on SEZ6L
3'UTR of SEZ6L
(miRNA target sites are highlighted)
>SEZ6L|NM_001184773|3'UTR
   1 AGAGAGCTACACTTGAGAAGGGGACTTGTGAACTCAACCACAATCTCCTCGAGACATTCATCCAGAGACCATGTGGCACT
  81 TGATTGAAACCCCAGAATGTCGACTGTCTTTTGTTTAGACTCTTTATCAAAGGTTTACTGTTTTCTTCCCTGTATTTATT
 161 ATATTTAAAAGTGAAATAGGTGTGGGTTTGGATGTTTCGCGGCCTCAGCCAAATTCATGTTACAGCCTCAATTCTGAAGG
 241 CAGGTGGAAGACTTGCAAAATGGCAAACCGCGGCAGCAAAAACACAAAACAGCAGATGGAGTTTCTCCCATCAGCAATGC
 321 CATGCTAAGGCTGCATTGAATTGCATGCATCTTTGGGAACCATGCCCATGATGTTTTCAGTACAAATCTAAGTCCCAAGA
 401 TTAGGTTGGAAAGGGTATTTCTTGTTGGCTTAGTTTGGGTTGGAATTTAGCATGGGTACTTAAACCCATTTGGAGAGCTG
 481 TGCTCCTAAACAAATTCTGTGTCCTCTCTTCCCATTTTGCCAGCTTCTGAAAGGTTTTTCCACAGCCCCTCCCTCTCACG
 561 GTTCTTCTGAAGGTAGCAAAGGTGTTATATAAACATTGTCTTTTACCACTCTGGCCTCGCTGGACAGTGACAAAACAAGA
 641 AAACGTTTTCTTTCTAGAAAGGTGATAAACGACCAAAGGCAATTTTTCAGAGACAAATGAGAGATTTGAGAGTTCCAATG
 721 AAGAATTGGGTGAGGGGGATCATTGGGTAAGGGAATTGGGTTAAAATGTTCTTTTCTTTGACACTCTTTCAATGATGAAA
 801 GAGCGTGTAATTTATGCTACAAGTGCCAGAATCGATCACCATGTTCAGCAAGCCACTCTCAAGCTGTGGTAATAAACACA
 881 CAGGCTTGGGAGGCACCAGCGGCCCCACTCATACAGTGACAAGGATTTGTGATGGGAAAAAGGAGGTGCCATGTTTGGAA
 961 ATGCAGGGGTGAGCTCTGGTTTCTCCTGGGGTTCTGGAATATCTCAGCCCTCAAAATAGAGGAGACTCAAGTGCACTGAT
1041 TCTCTAAAAGGTGTCATCTTCAGAATATACTTGCCATCAAGTATTTCAGGGGGCGGGAGGGTCCCATGAGAAGAAACTAT
1121 TTTTCTATTCTCCAAAGCTGTCTGGATGTTGGAGGGTGGTGTGAATGCTGACTGAGGAGGTGCAGAGAACAGGGGCAGGG
1201 GATTTTAAATCACAGCAGACCATCCAGTGGAATCCTGTATCATCTGATCTGAACATCAATGAAGACAGAGAGAGGAATTT
1281 CATTCAGAAAGGATTCCATAGCCCCACATCTAGTCACACGGGCATTCCTCTTATTTTATCAGGGTCTGTTTTCCCCCAAC
1361 CCAGTGAAACCGGTGAGTGTGTAACTCTTGGGAAGATTCTTTTCTAAATACAGGTATAAAGAGAAGGTGGAGGGTGCGGG
1441 TGCATGGAAGAAATACTATGTGTGAAGCAGATTCACCTTCCTGGGACCGGTGACATGGTGGTGACAGTCAATGGCTTGGA
1521 CAGACAGACGGGCACAGTGGCATTTGGAACCCTCTTTGGTGCCCTCCCATTCTCTCTGGAATTGTTTCAAGTCTGCTGGT
1601 TTTCAAACAAGAAAAGACCTTTCTGGCCATAGGGAGAATAGCAGGGAGTCTATGTTTTGGTGGTTACATTGGAAACATCT
1681 TAAGCAAGATAGGGAAAGTTGATTTTAGGCACACATGTACCCTCCTTGACAGCAGGAACTCAGACTTCAATCTTGGGGGT
1761 CTAAGACCAGAATATTTTCCTTCTGCCAGAAAAGAATCTTGCACATATACTCCTGAAGGCATGAGTGTGTGGTCCATGGC
1841 AAGAAATAGCTAAAGGCTGCTTTCCAGGACCCAAAGCCCCATTTAATGCAAGAACCAGAGAAGTGTTCTAGGCCATTAGT
1921 GGACAATGTCATGTTTGGAGAAAGATAACAACACAAATAATGTAACCTTTCCTTAAAAGGCAGAACTCAATCCATTTTAT
2001 TTGATGCTTATTCTAACCCTAACCCTGGGTCACCTGGAATGAAGAACTCTATGAATAATATTTGATTTTACAACGTGTTA
2081 TGGTTATGTGAAAACTAAACATTTGCCTTTTATAAAGACTGACAAAATATAAATCTTTATTCTAACCCTATCCCCAAAAC
2161 TAGCCAGGCCACACCCCAGATGTTCTTATTGACTATTGGAAAGATAGAAAAGGCGTTGTGTTTTTTGTTTTTTTGTTGTT
2241 GTTGTCATTGTTGTTTTTTTCAGAAGACCAGTGTCTCAGTTCTGTCTTAGTAGTACCACACCCGTAACCGTGTTTTAAAA
2321 GTTTGTTTTAGCCTAGAGACAGATCATACGAGTTCAACAATGTACAGTGTGATTGAAAAGACAGGTTGGTGTCTATTTTT
2401 CTTTTTAAAATATCTGAATGTGTATTTGTAATACGTAAAGGTAAAAAAAAATAGTGCCAAAAATGTGCAAGGCATCTCAT
2481 TACAGCTCATGTACGTCTGTTTTTATAAGATCAATATTAAAACCCATTGGGATTAAATATTTTTGAATAGGATACACTCT
2561 TGAGAAACTCGAGAATGGACTGAGCCTTCCTACAAGCCACTCTTTGTTTTTAAAACAGTGGGGAAATACGTTTACAGAGA
2641 TTGTGAGCTTCAGAGAATGCATGTGATGGTGTGTATTACATGCTAATTCATATAAGCTGTATCTGTCAGCTACCACCCTG
2721 TGCTTTAAAAATGCACACACTCAACCCTCTTTAGCTTGGAGCTCAGCTTTTTGCTTTTTTTTTTTTTTTTTTGTAGAATT
2801 ATTTAGCTAACATAAGTATTCTGATTGCTACCTGATGGCCATTCTTACTTAGTTTCATAGATGTGCTTTAACTATGATCC
2881 TTTGAAGCTCACCCCTTGGAGAGCCTACAGAACCTCAGGCTGATAGCTTTGAAGACTGCCAAACAGCCCAGAAGGAAGCA
2961 AAGCATCTGCATAATCAGGAGGGTTGTATAACAAGTAGTGATTTGGCAAATATGTGGGTAGCTTTAGGCTGAGGCACGGG
3041 CCTCAGGCAAAAATGCCCTTCGAGTGAATCCGAAGGGCATGATCTTCCTATGTCCTTGACTAGGCATGACGAGTCATTTG
3121 AGGTCAGATATTATTTGAGTTGTTCAGCACCCCCAAAGGTAGGCATTCTCCTGGGAAATTTTCATTTCCATTTTATCGCC
3201 AAACAAAATAAAAAGCAAAACAAACTTTCTAAGCTAGAATAATGAAATTAAGTCATTTTCCACTTTGTATATATTGATGC
3281 TAATAAAACAGATGAAAAAGAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaACCCAAAAUUCU-CAAGAAAu 5'
            ||||  |||| | ||||||| 
Target 5' atTGGG--TTAAAATGTTCTTTt 3'
755 - 775 164.00 -14.40
2
miRNA  3' uaACCCAAAAUUCUCAAGAAAu 5'
            || |||||    |||:||| 
Target 5' gtTGTGTTTT--TTGTTTTTTt 3'
2215 - 2234 140.00 -7.00
3
miRNA  3' uaaCCCAAAAUUCUCAAGAAAu 5'
             | ||||||| ||||: || 
Target 5' accGTGTTTTAAAAGTTTGTTt 3'
2307 - 2328 131.00 -6.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19347654 7 COSMIC
COSN30487631 22 COSMIC
COSN30140029 27 COSMIC
COSN30514958 39 COSMIC
COSN30105865 42 COSMIC
COSN30188521 64 COSMIC
COSN31509399 66 COSMIC
COSN28045108 68 COSMIC
COSN30498302 102 COSMIC
COSN8997202 103 COSMIC
COSN30155263 119 COSMIC
COSN31956748 133 COSMIC
COSN30525869 149 COSMIC
COSN31583647 157 COSMIC
COSN20226148 201 COSMIC
COSN30654044 202 COSMIC
COSN4974117 271 COSMIC
COSN22126143 484 COSMIC
COSN29632511 494 COSMIC
COSN21362259 557 COSMIC
COSN1260259 662 COSMIC
COSN25662596 990 COSMIC
COSN10028901 1249 COSMIC
COSN16569886 1321 COSMIC
COSN5990055 1489 COSMIC
COSN30583964 1667 COSMIC
COSN30556675 1711 COSMIC
COSN27177247 1734 COSMIC
COSN30144643 1734 COSMIC
COSN13907669 1737 COSMIC
COSN5990056 1786 COSMIC
COSN8612524 1799 COSMIC
COSN25899930 1909 COSMIC
COSN2476917 1968 COSMIC
COSN22077346 2172 COSMIC
COSN9163143 2219 COSMIC
COSN21168552 2285 COSMIC
COSN21595172 2305 COSMIC
COSN1260260 2380 COSMIC
COSN24856176 2461 COSMIC
COSN18941108 2630 COSMIC
COSN27255246 2792 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765878831 5 dbSNP
rs1349837364 7 dbSNP
rs1377441135 10 dbSNP
rs776546447 11 dbSNP
rs375371828 12 dbSNP
rs1401108072 16 dbSNP
rs764921132 21 dbSNP
rs1296350221 25 dbSNP
rs1369591735 40 dbSNP
rs758161731 44 dbSNP
rs1188644740 49 dbSNP
rs75138773 51 dbSNP
rs142360994 52 dbSNP
rs1330961390 55 dbSNP
rs1415795334 56 dbSNP
rs144636647 61 dbSNP
rs898260228 65 dbSNP
rs1007591939 70 dbSNP
rs1017093104 73 dbSNP
rs1175987341 74 dbSNP
rs1489674818 78 dbSNP
rs1204933862 81 dbSNP
rs1013142809 85 dbSNP
rs1220403313 102 dbSNP
rs5997084 121 dbSNP
rs1483187257 122 dbSNP
rs994339880 134 dbSNP
rs527895322 141 dbSNP
rs1228520388 149 dbSNP
rs1327850714 179 dbSNP
rs1304870015 180 dbSNP
rs549589225 186 dbSNP
rs567634217 191 dbSNP
rs540882233 193 dbSNP
rs772989655 196 dbSNP
rs560672222 199 dbSNP
rs1002741911 200 dbSNP
rs550191854 201 dbSNP
rs184914894 202 dbSNP
rs1457901464 204 dbSNP
rs539695156 205 dbSNP
rs956669395 215 dbSNP
rs988114468 218 dbSNP
rs1291852899 219 dbSNP
rs1435377422 219 dbSNP
rs1426353035 222 dbSNP
rs1193444840 227 dbSNP
rs1467397200 232 dbSNP
rs915288399 233 dbSNP
rs1208959503 236 dbSNP
rs979724914 242 dbSNP
rs1464049974 243 dbSNP
rs1390179501 244 dbSNP
rs925228079 247 dbSNP
rs1235353930 261 dbSNP
rs776398728 262 dbSNP
rs975930633 264 dbSNP
rs1231887072 270 dbSNP
rs557786876 271 dbSNP
rs112693479 272 dbSNP
rs113309050 273 dbSNP
rs1384376486 282 dbSNP
rs1287151885 291 dbSNP
rs1342431911 292 dbSNP
rs760758287 306 dbSNP
rs572957531 313 dbSNP
rs934098835 323 dbSNP
rs908802316 326 dbSNP
rs1051041271 327 dbSNP
rs1453037045 337 dbSNP
rs1038060891 341 dbSNP
rs1392339431 343 dbSNP
rs1229232174 346 dbSNP
rs898181058 348 dbSNP
rs889817438 349 dbSNP
rs1427502781 350 dbSNP
rs1259091048 358 dbSNP
rs1483284736 361 dbSNP
rs942722296 362 dbSNP
rs1263147926 364 dbSNP
rs1012656800 369 dbSNP
rs1338352160 373 dbSNP
rs1344058934 374 dbSNP
rs1297998990 378 dbSNP
rs533730609 384 dbSNP
rs1044575909 385 dbSNP
rs906994256 393 dbSNP
rs1254758121 407 dbSNP
rs1463497989 415 dbSNP
rs1397917386 416 dbSNP
rs1002666976 418 dbSNP
rs1031521211 430 dbSNP
rs1433336925 432 dbSNP
rs955974257 448 dbSNP
rs555564559 449 dbSNP
rs1038986470 453 dbSNP
rs1461767687 454 dbSNP
rs1390630089 457 dbSNP
rs1011470565 469 dbSNP
rs1022281853 478 dbSNP
rs1256129448 485 dbSNP
rs968488353 496 dbSNP
rs898765281 501 dbSNP
rs975521512 503 dbSNP
rs573396773 505 dbSNP
rs529364794 507 dbSNP
rs1163007786 517 dbSNP
rs1337186248 519 dbSNP
rs921351095 536 dbSNP
rs151237595 540 dbSNP
rs764836802 540 dbSNP
rs1328020495 541 dbSNP
rs1413502048 542 dbSNP
rs543943896 543 dbSNP
rs1352904266 544 dbSNP
rs994308361 560 dbSNP
rs1025846065 561 dbSNP
rs1164654031 562 dbSNP
rs1458053322 565 dbSNP
rs1416567025 579 dbSNP
rs908772748 593 dbSNP
rs549439507 594 dbSNP
rs1473275046 597 dbSNP
rs79392905 601 dbSNP
rs1180992417 607 dbSNP
rs1435871904 612 dbSNP
rs1269129213 613 dbSNP
rs1023392859 619 dbSNP
rs375923717 620 dbSNP
rs979140789 623 dbSNP
rs527615945 627 dbSNP
rs547652130 633 dbSNP
rs1044115302 636 dbSNP
rs1331320828 640 dbSNP
rs1320763216 645 dbSNP
rs1238893547 646 dbSNP
rs1334380360 654 dbSNP
rs1325896601 658 dbSNP
rs60383901 671 dbSNP
rs987918221 672 dbSNP
rs189670414 707 dbSNP
rs545648904 717 dbSNP
rs115524791 719 dbSNP
rs1326985617 726 dbSNP
rs370558030 727 dbSNP
rs1157942086 739 dbSNP
rs1208091427 743 dbSNP
rs986811220 744 dbSNP
rs1379181354 757 dbSNP
rs183208392 761 dbSNP
rs5761503 765 dbSNP
rs1252684271 774 dbSNP
rs781445496 776 dbSNP
rs920159142 789 dbSNP
rs1284992506 796 dbSNP
rs1223746582 803 dbSNP
rs903814703 805 dbSNP
rs561507831 806 dbSNP
rs1235552429 809 dbSNP
rs1047253942 810 dbSNP
rs1436753463 811 dbSNP
rs867244387 816 dbSNP
rs1409926910 818 dbSNP
rs531802325 827 dbSNP
rs1316966308 833 dbSNP
rs587471 834 dbSNP
rs1013765277 835 dbSNP
rs1173074177 837 dbSNP
rs1160610694 838 dbSNP
rs1347499644 840 dbSNP
rs1453583748 843 dbSNP
rs948163169 850 dbSNP
rs1464812210 854 dbSNP
rs1302646186 855 dbSNP
rs986909533 858 dbSNP
rs117888300 861 dbSNP
rs904955555 864 dbSNP
rs1415086893 865 dbSNP
rs961573114 867 dbSNP
rs1348138390 871 dbSNP
rs1227676749 876 dbSNP
rs1000928663 878 dbSNP
rs116578176 882 dbSNP
rs1212139026 884 dbSNP
rs956618178 889 dbSNP
rs547803589 893 dbSNP
rs1347625374 895 dbSNP
rs1278570944 897 dbSNP
rs1230199054 898 dbSNP
rs1030212823 901 dbSNP
rs1269202722 902 dbSNP
rs1428109281 906 dbSNP
rs1341735665 913 dbSNP
rs1313425859 917 dbSNP
rs1433977343 932 dbSNP
rs527518806 933 dbSNP
rs138176320 934 dbSNP
rs928326675 938 dbSNP
rs1420566083 945 dbSNP
rs1186145098 950 dbSNP
rs1474469108 963 dbSNP
rs1483694910 970 dbSNP
rs1239222727 974 dbSNP
rs938420147 979 dbSNP
rs1052834235 1004 dbSNP
rs911267064 1011 dbSNP
rs1207795360 1013 dbSNP
rs1308429695 1017 dbSNP
rs567246554 1023 dbSNP
rs780047027 1025 dbSNP
rs748037983 1036 dbSNP
rs947212555 1037 dbSNP
rs1293329564 1040 dbSNP
rs1042945780 1045 dbSNP
rs1353539390 1046 dbSNP
rs1472284514 1048 dbSNP
rs1183020349 1052 dbSNP
rs1170022046 1054 dbSNP
rs919973826 1063 dbSNP
rs868219662 1065 dbSNP
rs1047306378 1076 dbSNP
rs918192286 1077 dbSNP
rs561005848 1084 dbSNP
rs900431891 1089 dbSNP
rs188165461 1093 dbSNP
rs555262140 1094 dbSNP
rs573510953 1095 dbSNP
rs537500815 1096 dbSNP
rs1008310153 1101 dbSNP
rs904924175 1112 dbSNP
rs1232213374 1114 dbSNP
rs141792319 1115 dbSNP
rs73879891 1116 dbSNP
rs1224212369 1127 dbSNP
rs892095033 1139 dbSNP
rs1300308328 1140 dbSNP
rs1348376957 1141 dbSNP
rs1212798337 1142 dbSNP
rs1009189046 1149 dbSNP
rs1461046393 1152 dbSNP
rs1272698738 1154 dbSNP
rs1161944787 1156 dbSNP
rs749809440 1164 dbSNP
rs544658063 1178 dbSNP
rs5752315 1180 dbSNP
rs1479204166 1181 dbSNP
rs1253315922 1191 dbSNP
rs954639249 1196 dbSNP
rs1466762512 1197 dbSNP
rs1007791368 1216 dbSNP
rs928295480 1222 dbSNP
rs1216444961 1223 dbSNP
rs191717454 1230 dbSNP
rs959737311 1236 dbSNP
rs1304750791 1238 dbSNP
rs1220793857 1243 dbSNP
rs1017460792 1245 dbSNP
rs1304444934 1247 dbSNP
rs746868022 1260 dbSNP
rs1392416158 1267 dbSNP
rs570009596 1272 dbSNP
rs1454355914 1277 dbSNP
rs1345183723 1283 dbSNP
rs1157555452 1292 dbSNP
rs1455861989 1294 dbSNP
rs964467896 1299 dbSNP
rs974151572 1300 dbSNP
rs770818799 1303 dbSNP
rs776492205 1315 dbSNP
rs879389092 1320 dbSNP
rs1263364306 1321 dbSNP
rs951338396 1325 dbSNP
rs1485251688 1340 dbSNP
rs1258959888 1345 dbSNP
rs1455825190 1360 dbSNP
rs116906183 1371 dbSNP
rs561423322 1372 dbSNP
rs751987681 1373 dbSNP
rs981347704 1387 dbSNP
rs1297978968 1391 dbSNP
rs183544332 1410 dbSNP
rs769444885 1412 dbSNP
rs1361283991 1415 dbSNP
rs543899595 1427 dbSNP
rs1434174557 1429 dbSNP
rs892232410 1438 dbSNP
rs1037086813 1439 dbSNP
rs1236153403 1443 dbSNP
rs565361094 1445 dbSNP
rs1433217832 1455 dbSNP
rs897248631 1459 dbSNP
rs188874701 1460 dbSNP
rs192366428 1469 dbSNP
rs970285945 1470 dbSNP
rs1275176109 1476 dbSNP
rs1001739072 1489 dbSNP
rs115727743 1490 dbSNP
rs1256693395 1498 dbSNP
rs1254120185 1508 dbSNP
rs1208535156 1513 dbSNP
rs1470230867 1514 dbSNP
rs890353529 1524 dbSNP
rs527551524 1530 dbSNP
rs549262293 1531 dbSNP
rs482902 1535 dbSNP
rs1168182255 1543 dbSNP
rs995097557 1545 dbSNP
rs1293470773 1552 dbSNP
rs1027043684 1554 dbSNP
rs1403052094 1568 dbSNP
rs879883414 1576 dbSNP
rs912960595 1578 dbSNP
rs1413394006 1583 dbSNP
rs1395035614 1592 dbSNP
rs79154331 1617 dbSNP
rs982764465 1620 dbSNP
rs1364251792 1628 dbSNP
rs1166534907 1631 dbSNP
rs1475241867 1634 dbSNP
rs183837315 1637 dbSNP
rs921756120 1639 dbSNP
rs1272103772 1646 dbSNP
rs571008564 1653 dbSNP
rs971381336 1655 dbSNP
rs1227754049 1668 dbSNP
rs1051645652 1669 dbSNP
rs1256369638 1670 dbSNP
rs981010927 1671 dbSNP
rs926869172 1674 dbSNP
rs540636505 1682 dbSNP
rs601548 1691 dbSNP
rs780336305 1695 dbSNP
rs897182727 1698 dbSNP
rs1456906014 1699 dbSNP
rs751992654 1704 dbSNP
rs749788191 1707 dbSNP
rs755547227 1711 dbSNP
rs1329914688 1716 dbSNP
rs1391160020 1717 dbSNP
rs746552991 1718 dbSNP
rs995988178 1718 dbSNP
rs779317999 1719 dbSNP
rs748495103 1731 dbSNP
rs1479695961 1734 dbSNP
rs377155701 1735 dbSNP
rs774944913 1740 dbSNP
rs1465330886 1748 dbSNP
rs73415354 1752 dbSNP
rs746731545 1758 dbSNP
rs770416615 1760 dbSNP
rs1292925358 1763 dbSNP
rs1343384805 1764 dbSNP
rs890086349 1768 dbSNP
rs776274116 1769 dbSNP
rs1278637922 1770 dbSNP
rs1180879524 1773 dbSNP
rs1316861984 1782 dbSNP
rs1212460765 1785 dbSNP
rs1417064870 1786 dbSNP
rs759441426 1789 dbSNP
rs769734981 1793 dbSNP
rs775315426 1794 dbSNP
rs762738515 1795 dbSNP
rs572013794 1796 dbSNP
rs1489953572 1799 dbSNP
rs943033014 1806 dbSNP
rs1272572088 1813 dbSNP
rs143254900 1816 dbSNP
rs1035874522 1817 dbSNP
rs1471610890 1821 dbSNP
rs542926685 1826 dbSNP
rs1010468284 1827 dbSNP
rs1441127024 1837 dbSNP
rs1393139124 1847 dbSNP
rs899092203 1851 dbSNP
rs1418018691 1856 dbSNP
rs1323359877 1857 dbSNP
rs555314462 1860 dbSNP
rs1385649922 1861 dbSNP
rs1157921696 1868 dbSNP
rs1052299646 1869 dbSNP
rs767852439 1872 dbSNP
rs1020359343 1873 dbSNP
rs114145797 1874 dbSNP
rs1252575642 1875 dbSNP
rs35212633 1876 dbSNP
rs563862116 1881 dbSNP
rs370264622 1882 dbSNP
rs887190817 1891 dbSNP
rs756260084 1894 dbSNP
rs1448810563 1901 dbSNP
rs1004337123 1904 dbSNP
rs777305101 1907 dbSNP
rs1320059226 1911 dbSNP
rs529455195 1912 dbSNP
rs1282866376 1915 dbSNP
rs16981991 1917 dbSNP
rs565524176 1918 dbSNP
rs566483976 1918 dbSNP
rs1272701507 1920 dbSNP
rs1293960744 1928 dbSNP
rs372296472 1932 dbSNP
rs1326431453 1936 dbSNP
rs186951974 1950 dbSNP
rs532489065 1961 dbSNP
rs1380407850 1962 dbSNP
rs77237339 1963 dbSNP
rs1268003931 1967 dbSNP
rs1433855040 1969 dbSNP
rs76540571 1973 dbSNP
rs78032966 1974 dbSNP
rs74382755 1975 dbSNP
rs940574559 1977 dbSNP
rs972008152 1979 dbSNP
rs1352056804 1980 dbSNP
rs149269258 1987 dbSNP
rs867797477 1989 dbSNP
rs530128396 1991 dbSNP
rs966425271 1993 dbSNP
rs987143048 2001 dbSNP
rs1048925125 2002 dbSNP
rs1212115990 2004 dbSNP
rs146221536 2006 dbSNP
rs937487494 2023 dbSNP
rs777806408 2024 dbSNP
rs5997085 2025 dbSNP
rs1269039161 2029 dbSNP
rs920505834 2058 dbSNP
rs191420478 2067 dbSNP
rs75170824 2070 dbSNP
rs528499403 2072 dbSNP
rs16981994 2075 dbSNP
rs1332466366 2076 dbSNP
rs529482803 2088 dbSNP
rs1046491569 2096 dbSNP
rs999875111 2101 dbSNP
rs1167461279 2103 dbSNP
rs906622385 2115 dbSNP
rs1414090669 2125 dbSNP
rs1002195335 2135 dbSNP
rs1485554972 2150 dbSNP
rs745521596 2165 dbSNP
rs1377522848 2182 dbSNP
rs538311025 2184 dbSNP
rs1034119360 2186 dbSNP
rs570735940 2190 dbSNP
rs184889287 2191 dbSNP
rs1271823467 2196 dbSNP
rs1216328788 2197 dbSNP
rs489363 2201 dbSNP
rs1273425023 2212 dbSNP
rs1344804213 2213 dbSNP
rs189787384 2215 dbSNP
rs1212087530 2216 dbSNP
rs1021165193 2217 dbSNP
rs1330926272 2221 dbSNP
rs1464134269 2226 dbSNP
rs1396707635 2228 dbSNP
rs920530409 2228 dbSNP
rs966826349 2228 dbSNP
rs181806723 2233 dbSNP
rs911633700 2234 dbSNP
rs1486456736 2236 dbSNP
rs984157197 2240 dbSNP
rs1249287997 2242 dbSNP
rs1438301169 2244 dbSNP
rs927311315 2246 dbSNP
rs775321066 2247 dbSNP
rs1309044017 2248 dbSNP
rs1319910095 2248 dbSNP
rs7284717 2249 dbSNP
rs1174041495 2252 dbSNP
rs1308814032 2253 dbSNP
rs1057180740 2254 dbSNP
rs1397045230 2256 dbSNP
rs1373327238 2259 dbSNP
rs576804469 2264 dbSNP
rs1457450063 2270 dbSNP
rs1297670780 2271 dbSNP
rs946224621 2272 dbSNP
rs1397368845 2279 dbSNP
rs1161830931 2281 dbSNP
rs1042331116 2286 dbSNP
rs1322104235 2293 dbSNP
rs1380025961 2297 dbSNP
rs544167740 2302 dbSNP
rs139223070 2304 dbSNP
rs930305872 2305 dbSNP
rs1306093050 2310 dbSNP
rs185094410 2311 dbSNP
rs1028644269 2319 dbSNP
rs143967932 2333 dbSNP
rs567445737 2334 dbSNP
rs1350383983 2336 dbSNP
rs1008647349 2347 dbSNP
rs1018707892 2350 dbSNP
rs1197058297 2351 dbSNP
rs1265105909 2353 dbSNP
rs1365509197 2354 dbSNP
rs145942215 2360 dbSNP
rs961839148 2362 dbSNP
rs1194021623 2369 dbSNP
rs1254717874 2371 dbSNP
rs1447869959 2372 dbSNP
rs949833579 2377 dbSNP
rs1046003995 2382 dbSNP
rs574865587 2389 dbSNP
rs1430959844 2392 dbSNP
rs906599058 2429 dbSNP
rs1002739019 2435 dbSNP
rs1487943940 2435 dbSNP
rs1055124761 2436 dbSNP
rs981125786 2438 dbSNP
rs1212829311 2442 dbSNP
rs1232746980 2443 dbSNP
rs1485873696 2443 dbSNP
rs71758401 2443 dbSNP
rs201703792 2444 dbSNP
rs893765120 2453 dbSNP
rs1297870436 2454 dbSNP
rs1215219846 2456 dbSNP
rs1010880397 2466 dbSNP
rs1021134159 2468 dbSNP
rs767868862 2469 dbSNP
rs1376382037 2473 dbSNP
rs917342075 2478 dbSNP
rs1374401406 2479 dbSNP
rs1477201203 2487 dbSNP
rs16981995 2487 dbSNP
rs1328328919 2491 dbSNP
rs1421476324 2494 dbSNP
rs563385379 2495 dbSNP
rs964487209 2496 dbSNP
rs974867013 2497 dbSNP
rs1198484959 2512 dbSNP
rs926141977 2513 dbSNP
rs1434865479 2516 dbSNP
rs1199426608 2523 dbSNP
rs1294345184 2524 dbSNP
rs531463165 2529 dbSNP
rs189355139 2531 dbSNP
rs1356534812 2546 dbSNP
rs564906144 2549 dbSNP
rs1027411780 2562 dbSNP
rs375396060 2572 dbSNP
rs1394629485 2575 dbSNP
rs762167581 2576 dbSNP
rs1398253878 2577 dbSNP
rs182007069 2593 dbSNP
rs555059349 2600 dbSNP
rs766671706 2601 dbSNP
rs1397440062 2603 dbSNP
rs1040118777 2610 dbSNP
rs897597129 2626 dbSNP
rs907778493 2630 dbSNP
rs949969821 2631 dbSNP
rs1185221963 2637 dbSNP
rs773451315 2640 dbSNP
rs547307644 2642 dbSNP
rs753973963 2660 dbSNP
rs927152763 2704 dbSNP
rs937197153 2706 dbSNP
rs1457383611 2714 dbSNP
rs1027477211 2717 dbSNP
rs369050660 2726 dbSNP
rs1185741420 2741 dbSNP
rs1262625787 2747 dbSNP
rs893905657 2750 dbSNP
rs1243153079 2753 dbSNP
rs1337833740 2755 dbSNP
rs1307277497 2768 dbSNP
rs141631869 2773 dbSNP
rs1445531424 2774 dbSNP
rs890803166 2774 dbSNP
rs1239818044 2775 dbSNP
rs1364114373 2775 dbSNP
rs1374160678 2775 dbSNP
rs35749592 2775 dbSNP
rs398036704 2775 dbSNP
rs761988016 2775 dbSNP
rs763011509 2775 dbSNP
rs77779362 2775 dbSNP
rs78604204 2777 dbSNP
rs946706360 2781 dbSNP
rs1417317859 2783 dbSNP
rs1439356906 2788 dbSNP
rs565743820 2789 dbSNP
rs1195638258 2791 dbSNP
rs1462397881 2791 dbSNP
rs1167679882 2792 dbSNP
rs1452246158 2792 dbSNP
rs1208516214 2793 dbSNP
rs79458369 2793 dbSNP
rs1003915094 2794 dbSNP
rs1453419726 2796 dbSNP
rs1289820214 2797 dbSNP
rs62224568 2799 dbSNP
rs1015179137 2802 dbSNP
rs1362215448 2806 dbSNP
rs536396235 2813 dbSNP
rs1290875780 2822 dbSNP
rs1354321099 2839 dbSNP
rs1329949368 2843 dbSNP
rs917270304 2844 dbSNP
rs547206303 2845 dbSNP
rs1383805524 2851 dbSNP
rs1385536583 2859 dbSNP
rs1157875634 2863 dbSNP
rs1233404054 2864 dbSNP
rs1295002921 2865 dbSNP
rs755151950 2866 dbSNP
rs902772194 2867 dbSNP
rs1009598679 2872 dbSNP
rs1478404266 2878 dbSNP
rs1377091168 2882 dbSNP
rs1196807231 2888 dbSNP
rs1449282841 2889 dbSNP
rs1214729778 2897 dbSNP
rs778845104 2916 dbSNP
rs1487475547 2919 dbSNP
rs1282043775 2921 dbSNP
rs548197118 2931 dbSNP
rs1343717983 2943 dbSNP
rs1198999164 2945 dbSNP
rs73158677 2947 dbSNP
rs1297500387 2954 dbSNP
rs1341116201 2954 dbSNP
rs1397918029 2957 dbSNP
rs926139162 2966 dbSNP
rs140605651 2968 dbSNP
rs996375451 2968 dbSNP
rs1027786641 2974 dbSNP
rs537693503 2987 dbSNP
rs2092744 2992 dbSNP
rs16981998 2993 dbSNP
rs1476431178 2997 dbSNP
rs1424978510 3000 dbSNP
rs910819461 3005 dbSNP
rs944331463 3009 dbSNP
rs577333158 3014 dbSNP
rs1246699242 3016 dbSNP
rs1014636954 3030 dbSNP
rs1410310341 3038 dbSNP
rs971294961 3041 dbSNP
rs1441534188 3046 dbSNP
rs981730674 3054 dbSNP
rs993254766 3058 dbSNP
rs535198827 3062 dbSNP
rs1277503545 3064 dbSNP
rs887580878 3069 dbSNP
rs927235097 3072 dbSNP
rs937141348 3073 dbSNP
rs1002456380 3075 dbSNP
rs1358872260 3078 dbSNP
rs142481081 3080 dbSNP
rs1467262639 3086 dbSNP
rs896386613 3091 dbSNP
rs781164949 3111 dbSNP
rs73415355 3112 dbSNP
rs1182861907 3121 dbSNP
rs1472670669 3125 dbSNP
rs541930811 3156 dbSNP
rs1294603223 3167 dbSNP
rs8136212 3171 dbSNP
rs745613245 3176 dbSNP
rs967820156 3180 dbSNP
rs1457839910 3185 dbSNP
rs902486726 3191 dbSNP
rs977492584 3198 dbSNP
rs563297427 3199 dbSNP
rs1307413144 3201 dbSNP
rs957531378 3205 dbSNP
rs1041001600 3209 dbSNP
rs186236660 3210 dbSNP
rs376337208 3221 dbSNP
rs755843669 3231 dbSNP
rs1330817351 3236 dbSNP
rs1464115604 3249 dbSNP
rs1352183758 3250 dbSNP
rs1166021150 3268 dbSNP
rs1405152495 3270 dbSNP
rs1412011301 3277 dbSNP
rs996737825 3284 dbSNP
rs1049284053 3291 dbSNP
rs1028249124 3300 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 23544.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uaaCCCAAAAUUCUCAAgaaau 5'
             |||  ||  |:|||     
Target 5' uaaGGGAAUU--GGGUUaaaau 3'
1 - 20
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uaaCCCAAAAUUCUCAAgaaau 5'
             |||  ||  |:|||     
Target 5' uaaGGGAAUU--GGGUUaaaau 3'
1 - 20
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000360929.3 | 3UTR | UAAGGGAAUUGGGUUAAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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