miRTarBase - #MIRT513084


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pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol USP9X   
Synonyms DFFRX, FAF, FAM, MRX99, MRXS99F
Description ubiquitin specific peptidase 9, X-linked
Transcript NM_001039590   
Other Transcripts NM_001039591   
Expression
Putative miRNA Targets on USP9X
3'UTR of USP9X
(miRNA target sites are highlighted)		 
>USP9X|NM_001039590|3'UTR
   1 AATGCACATAATTAACTGGTTCCATCAAGACTGTGCACCCAGGCCTTACAGTCCAACCTTTTTCTGTGTCTGGCTAATAT
  81 TTAAAACTAGAAAAACTATTCCTAATCAACATGGAGTGGAGAGTTTATTCACTGTCTTATCTGCAGAAATTTGCTGTCAA
 161 TATATAACCCGCCTGCAGTGGAAAGTGTATAGTGTTTTGTAATAAATGGCCTGATGCTAATGTGTAAATGGCAAAGGTGT
 241 ATATAGTATATTAATGTTGACTGTTAATTCTTAAGCAAGAAACTTTTTTCTTGATGAGACTCACAGATCTACACAAACTA
 321 CAAAAGTTAATTTTCTTGTTACACCCACTGCACTCTGCAACCAGTGTTGCCTGCCTCATGGCAGTTGGATCAGCTCCTTT
 401 ACAAAAAAGAAAAAAAAAAAACCAACAGCAACAAAACAGAGCCCATCCATGTCAGCCACACCAATAGTTTCATGTTAATT
 481 CTTTGCCACTGGAGTCAATTTTGCTATGAGCAATGTAAGGCTGGTAACCTTTAAATTATTTGGTTGATGTGGAAAATTGG
 561 TGATGTAACACTGTTTCTAGATTTTTTTCATTGCCTTTTTATTCTGATATTAGGTTAATCACTTTGAAGCTATAGTTATG
 641 CTGTAACATTTAGCATGGCTTCACACCAAGTTAGTGTAGCCAATGAGGAAAAAGTTACCATAATGACAGCAGTTGTCCGA
 721 GAAGTGACAGCTGTATTACTCAGAGCTTTTACTTCTTACACCTAGAATATTAAAATATAAAACAAGGGGAGAAATGTGAC
 801 AGTCTATTTTCAGTTGCACATATGTTCCTTATATATAATGTTTGACAGTTCAATCTCTGGGTGGAATAAAGAACACTTAC
 881 GTATCAGTAATGGGAATTTTTAAAGATTTAAAACAAATATGCAAAAATTTGCTATGCCAAGATGCTGGAGCATAATATAA
 961 GACTGTATTTGGTGTGCTTGTTTTGTTTCTTTGGTAGAGTTTATTAGGTGAATCTTCTAAAACTTTCCTTCTGTTGGATC
1041 CCAGTGACGTGGAAGTCATCAGAACCCCACGGTACTTGGAGTACCTCTCTGCACCAAGATAGCTGGCTGATTTTCTGCTC
1121 AGTCACAATTTTACTTGAAAGCAAGAATTGTCCTAGCTCCTTTTCCATTATTCCAAAACGTTTAACGTTCAAAGCAGGGT
1201 CTCATTAAAAAAGAAACTACTGGTTGATATAATTGAGATATTACAATTTCAGAATAAACATTTGATTAAAAATAAGGAAA
1281 TCCTCAGTTCATACTGTATTTAAAAGAGAATTGGTAACTTGAATGTGTGTAATTTTTTGGAACCTGTCTAAAAACCAAAT
1361 ACCCCTGCAAACAGATACAGCCCACCCTATTCTATTTAAATATTTTGCTGTTTTATTTTATAGAAATTATTTTGCTGAAT
1441 TCACAAATAGAATTTGATTTAAGAAGAACTTTTTGTCCTGTGGTGTGTTTTTGGTTTTTTTTTTGGTTACTTTTTTTGTC
1521 CTTTTTTTTTTTTTTTAAAAGAGGACTGCATATTAAAATTCATTCTGTGCATAGCATGCCTAGGCATGACACTGATTCAG
1601 GATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTTGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATG
1681 TTGACACTGTAAAAGTTTCCTAACATAATCTTGTACTTTTTGTATGTTTTTTATATACATGTATATTTAATGAGCACAAG
1761 CTTGGTTGTATTTTTTACAATTCAGTTAATAGGGAAATGTTTTGTCAAAAGGCTACACTTGGAACTGAACAAAGCAGAAA
1841 CAAAATTGAGCATTGCATTATTTTGTGATTAAAAGGGGCAGGTATTTAAGATAAAGCTTTGGGTATCTTATTTGTAGTAC
1921 TGTATAGTCAACCTGTGCTTCTAGGTGTTCCTGTAGGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGT
2001 TTGCAATTCCAACTGATTTTTGTTTTGTTTTTATTTTTTTGTTGTTTTCTTCTTTGAGATGGAGTCTTGCTCTGTCACCC
2081 AGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACGTCGCCTCCTGGGTTCAAGCGATTCTTCCGCCTCAGCCTCC
2161 CGAGTAGCTGGGATTAGAGGTGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTGTAGAGACAGGGTTTCACCACGTT
2241 GGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGGCCGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGTGTGAG
2321 CCACCGCGCCTGGCCCCAGTTGATAGTTTTTTTAATTTAAAAGTTCCTCAATTCCAAGCTCTTTAAACGAGTGAAATAGG
2401 TTAACTTTATTTGGATGAGTTAGGTGTACCATCTCACCATCTGAGAGGAGATTTATATATTTCCTGCTGCTCCTTAACAA
2481 AATATGTAATGTACTTAAAAACTTTAACGACTTCCTAGTTGAGAGAAAACTTGACATATAAAAGGCTGTGAATTTTTCTG
2561 CTTGGAGGAAGAGCCCAACCTTGGTTGCTTTGAAGTTACAAGCCCCCTTGTGCCAGGTGAGGGGCTTGTGAGTCATTTTT
2641 GTCTCCATTTGAGGAAGAGTGGTATTCGTTGTGACTAGGAGCAAGGGAAAGTGGAGTTATTTTTGTTTGTGCAAATTATT
2721 TTCTATATTTAACTCAAGCATTAATGTATAACCAGAAATTTAAAGATGCATGTTGTTGCAAGAGCAACATAATGGTGATT
2801 TTGAGGTCTTTTTCTGAACACAAGTGGCACATTTTAAATTTCAAGTCTTCAAAGTGCCTAAGGATTATTTAGTTCTCCCT
2881 CAACTGATTTTTTGAGCCATATATTTCCTATTTTAAATGTTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCC
2961 AGAATTCTAAATGACACGATTATAGAAGACAGTAGAATGTGTTACCATAAAGACTGAAGATATTTTAGTTGTAAAACCAT
3041 GTGAACAAGGGCTTTTGCCCTATTGTATCTAAGTATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGC
3121 CCTCCACCAACTGAACTTTCATGTTTAGCATTGTAGAGGCAGAAATAACATACTAGGTTTTTTTTTTCTTTCATTGATTT
3201 TTCTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATTTAGAATTAAAATGTTTTCTATTTT
3281 TTTCATGATTAACTTAGTGAATAACTTAAATCCTTAATCCTCGTAGTGGTTAGAAAGATGAGGAGACTTTTTTGACTTAC
3361 ATTTGTAAATGAAAACAAGTCTGTGAATATTCAGATGACTACTTCGAAGTAATTCAGTTTTTTTATTAGTATTTTTCCAG
3441 CTTATGTTTTCCCATGAGCTATTTTACTTTGCTGAATTTTGTGGGTAATTTGGTGGATATATCCTGCCTTATTTAGGATT
3521 ATAGCTGGATAAGAAAATTGCCTTTTCATTGTAAGTGCCCAGTTTTGGTCTCTAGTTTGAAGGTACTACATACTGCCGAT
3601 AAAGGAAAACACTCCCCTACACCCCAGTTTTTGTGTTACCAAGAAAAAAAAAACAGTATTGGTTTCATAGTAGGACTCAA
3681 CCAGAATTGGTCCTACATATATGTGAGTGTTCAGTTTTTGCAAATAAGGTTTTTGAGTGTGATAAAACACTACAGAAGTG
3761 CTAAGTGTATTGAGAATTTGCTGCTGATTGTATTTATAACAATTACTTGACGTTTGCAGAAATTTAGCACTTTCCCTCCA
3841 AATTTATAGGTGTAAGAGAAGCGGGGGCAAGGTGCACCACATTTTAAAACTGCAAATGTGTGAAAATTTATTTAGAGATT
3921 CAGATTCCTAAAAGGAAATTTCACCACCCAAGTCATGCACTTCTTAGCCTTTTACAAGCCAACAGACTGACATGAAGATT
4001 GTTCACAGTTCCTAAGATTTAGCACATATACAAAAATAAAACTTTATAAATTCAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucuCCGUCCAAGGACCUAGUa 5'
             |||||    :||||||| 
Target 5' catGGCAG----TTGGATCAg 3'
 377 - 393 152.00 -15.60
2 
miRNA  3' ucuCCGUCCAAGGACCUAGUa 5'
             ||||   ||:||| ||| 
Target 5' agtGGCACAATCTTGGCTCAc 3'
 2093 - 2113 130.00 -14.20
3 
miRNA  3' ucuccguccAAG--GACCUAGua 5'
                   |||  :||||||  
Target 5' aaactttccTTCTGTTGGATCcc 3'
 1020 - 1042 126.00 -7.30
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs764740172 4 dbSNP
rs941494267 6 dbSNP
rs980966461 7 dbSNP
rs1186706324 8 dbSNP
rs758021124 13 dbSNP
rs1436113051 16 dbSNP
rs779732431 23 dbSNP
rs748481170 31 dbSNP
rs1011893428 36 dbSNP
rs756538230 40 dbSNP
rs1043011904 48 dbSNP
rs905687796 50 dbSNP
rs939636286 59 dbSNP
rs1173052212 78 dbSNP
rs1225770913 85 dbSNP
rs761791209 110 dbSNP
rs1351873608 112 dbSNP
rs1278547614 113 dbSNP
rs892090039 127 dbSNP
rs1332302245 133 dbSNP
rs945074398 133 dbSNP
rs1209250978 142 dbSNP
rs1404257511 147 dbSNP
rs1416716402 161 dbSNP
rs1299980445 163 dbSNP
rs10463 165 dbSNP
rs750360852 170 dbSNP
rs1035405480 171 dbSNP
rs1468849643 172 dbSNP
rs1391713052 175 dbSNP
rs1200151588 183 dbSNP
rs1480157570 193 dbSNP
rs1267321596 194 dbSNP
rs1218592728 209 dbSNP
rs1043432013 225 dbSNP
rs903635476 230 dbSNP
rs1007334170 231 dbSNP
rs1325330077 242 dbSNP
rs1283536633 249 dbSNP
rs1222316751 255 dbSNP
rs959791215 263 dbSNP
rs1017431965 264 dbSNP
rs1801413 269 dbSNP
rs1345608376 273 dbSNP
rs1233566716 280 dbSNP
rs1280398510 291 dbSNP
rs1243394532 292 dbSNP
rs1349337637 296 dbSNP
rs1415964186 297 dbSNP
rs1201826296 298 dbSNP
rs1250371579 301 dbSNP
rs1480766625 302 dbSNP
rs1408494547 303 dbSNP
rs1178117173 305 dbSNP
rs1177446927 308 dbSNP
rs758452044 331 dbSNP
rs1469317321 342 dbSNP
rs1427333681 343 dbSNP
rs780175003 347 dbSNP
rs1188775536 355 dbSNP
rs765589010 356 dbSNP
rs901680559 361 dbSNP
rs997809085 369 dbSNP
rs993811057 376 dbSNP
rs1191403097 383 dbSNP
rs1462948642 384 dbSNP
rs532609791 389 dbSNP
rs751354535 399 dbSNP
rs754837579 405 dbSNP
rs1320760272 408 dbSNP
rs1361104124 410 dbSNP
rs759670124 410 dbSNP
rs780643372 410 dbSNP
rs1268356615 411 dbSNP
rs1396216629 418 dbSNP
rs1416207002 422 dbSNP
rs1168455658 429 dbSNP
rs1354139822 438 dbSNP
rs952442021 446 dbSNP
rs1299669286 448 dbSNP
rs985440317 454 dbSNP
rs938046672 458 dbSNP
rs1403980162 464 dbSNP
rs951437495 465 dbSNP
rs1410612434 473 dbSNP
rs1419358088 482 dbSNP
rs1391406724 483 dbSNP
rs1166687698 493 dbSNP
rs1439907702 499 dbSNP
rs982806864 523 dbSNP
rs1017020205 528 dbSNP
rs1459747025 530 dbSNP
rs962823425 557 dbSNP
rs909507005 563 dbSNP
rs1204536821 564 dbSNP
rs1212244704 568 dbSNP
rs747901880 572 dbSNP
rs964813295 574 dbSNP
rs1307685163 578 dbSNP
rs1206262727 582 dbSNP
rs1377170348 589 dbSNP
rs974891368 600 dbSNP
rs1354044951 605 dbSNP
rs926741874 607 dbSNP
rs1427162434 614 dbSNP
rs1386236416 623 dbSNP
rs1163261779 640 dbSNP
rs149428213 671 dbSNP
rs1409641130 681 dbSNP
rs1213493842 684 dbSNP
rs1177457146 687 dbSNP
rs1254123484 695 dbSNP
rs1479319280 704 dbSNP
rs933386382 705 dbSNP
rs1480006526 710 dbSNP
rs1184827570 713 dbSNP
rs1053159028 719 dbSNP
rs1224606802 734 dbSNP
rs1490511473 734 dbSNP
rs1418984015 752 dbSNP
rs1243430455 760 dbSNP
rs1318529395 772 dbSNP
rs1309376130 778 dbSNP
rs1224584009 779 dbSNP
rs939542048 794 dbSNP
rs1429329551 796 dbSNP
rs777394037 799 dbSNP
rs913214836 807 dbSNP
rs947448677 815 dbSNP
rs1303104202 821 dbSNP
rs1456674876 824 dbSNP
rs1043324819 830 dbSNP
rs1159349245 831 dbSNP
rs905788094 837 dbSNP
rs1460689316 841 dbSNP
rs1409119093 842 dbSNP
rs552319983 854 dbSNP
rs772517269 862 dbSNP
rs570532221 882 dbSNP
rs1220207277 884 dbSNP
rs41305227 888 dbSNP
rs945017773 891 dbSNP
rs1287776802 903 dbSNP
rs770413509 915 dbSNP
rs1215819888 921 dbSNP
rs1291016436 923 dbSNP
rs1333735250 927 dbSNP
rs1346263716 928 dbSNP
rs769127237 935 dbSNP
rs1283168372 941 dbSNP
rs1385638714 957 dbSNP
rs1364504755 960 dbSNP
rs1289883455 967 dbSNP
rs1453498218 973 dbSNP
rs181857101 981 dbSNP
rs1385920412 989 dbSNP
rs1178174715 997 dbSNP
rs1469832870 1002 dbSNP
rs1043401290 1003 dbSNP
rs1196640039 1007 dbSNP
rs925025279 1008 dbSNP
rs1262164313 1013 dbSNP
rs1185650362 1020 dbSNP
rs1484783435 1024 dbSNP
rs943084367 1027 dbSNP
rs1025427743 1032 dbSNP
rs1205853534 1040 dbSNP
rs1324345913 1041 dbSNP
rs183876408 1045 dbSNP
rs765203418 1049 dbSNP
rs1231698566 1050 dbSNP
rs1038767361 1061 dbSNP
rs1214355707 1068 dbSNP
rs773389648 1071 dbSNP
rs2773 1072 dbSNP
rs1195968649 1076 dbSNP
rs766364795 1086 dbSNP
rs1475029986 1097 dbSNP
rs997378433 1099 dbSNP
rs1165336365 1100 dbSNP
rs751548446 1104 dbSNP
rs964947894 1126 dbSNP
rs1317481455 1128 dbSNP
rs974987613 1129 dbSNP
rs1004211057 1151 dbSNP
rs1401249709 1159 dbSNP
rs1461985172 1166 dbSNP
rs1255737236 1175 dbSNP
rs754726449 1188 dbSNP
rs1341593764 1196 dbSNP
rs954908101 1200 dbSNP
rs1227397305 1207 dbSNP
rs1340454855 1207 dbSNP
rs989298246 1212 dbSNP
rs1246253105 1216 dbSNP
rs1354397803 1218 dbSNP
rs767405464 1222 dbSNP
rs1033780426 1228 dbSNP
rs1392582891 1231 dbSNP
rs913318109 1238 dbSNP
rs1396640320 1242 dbSNP
rs1297516240 1244 dbSNP
rs1427804083 1245 dbSNP
rs947341746 1247 dbSNP
rs868101409 1274 dbSNP
rs992361950 1283 dbSNP
rs1443790443 1289 dbSNP
rs1368068614 1291 dbSNP
rs1043075137 1292 dbSNP
rs1185731994 1293 dbSNP
rs1439605929 1294 dbSNP
rs1251401765 1296 dbSNP
rs1205061388 1301 dbSNP
rs914126273 1302 dbSNP
rs1294595524 1309 dbSNP
rs1223612891 1311 dbSNP
rs1356130011 1312 dbSNP
rs1282031046 1319 dbSNP
rs781371866 1325 dbSNP
rs1358845284 1332 dbSNP
rs979657598 1336 dbSNP
rs1367305083 1347 dbSNP
rs1303709359 1351 dbSNP
rs752270969 1354 dbSNP
rs1222423697 1359 dbSNP
rs755749307 1364 dbSNP
rs1471315122 1371 dbSNP
rs1364454425 1373 dbSNP
rs1181466160 1374 dbSNP
rs1057100714 1376 dbSNP
rs943053368 1387 dbSNP
rs895644704 1392 dbSNP
rs929836189 1431 dbSNP
rs1039171382 1441 dbSNP
rs1223935946 1442 dbSNP
rs923069827 1443 dbSNP
rs1288244808 1445 dbSNP
rs777424158 1445 dbSNP
rs748736829 1452 dbSNP
rs1047214269 1459 dbSNP
rs1218855082 1461 dbSNP
rs189324134 1470 dbSNP
rs888213052 1484 dbSNP
rs775997568 1485 dbSNP
rs1283816683 1488 dbSNP
rs1320120996 1495 dbSNP
rs1401079807 1495 dbSNP
rs756764468 1495 dbSNP
rs1485464140 1496 dbSNP
rs181284876 1499 dbSNP
rs1005603563 1500 dbSNP
rs1455680825 1506 dbSNP
rs1431600509 1509 dbSNP
rs888569467 1510 dbSNP
rs1200764972 1511 dbSNP
rs1239444725 1511 dbSNP
rs1478025610 1518 dbSNP
rs114415755 1519 dbSNP
rs1468373576 1519 dbSNP
rs764501766 1521 dbSNP
rs1218575779 1522 dbSNP
rs1325049103 1522 dbSNP
rs747569481 1522 dbSNP
rs775584964 1522 dbSNP
rs886355070 1525 dbSNP
rs1342706615 1528 dbSNP
rs1271871476 1537 dbSNP
rs200346057 1537 dbSNP
rs186333517 1538 dbSNP
rs867682123 1539 dbSNP
rs1006101450 1540 dbSNP
rs1177158897 1543 dbSNP
rs1413987668 1547 dbSNP
rs1423619454 1570 dbSNP
rs1170178023 1574 dbSNP
rs1475929855 1587 dbSNP
rs777091885 1619 dbSNP
rs1017919864 1634 dbSNP
rs4827256 1637 dbSNP
rs779652265 1651 dbSNP
rs56680196 1670 dbSNP
rs1208745994 1678 dbSNP
rs1440220543 1693 dbSNP
rs1171197678 1700 dbSNP
rs1274981217 1705 dbSNP
rs898469137 1723 dbSNP
rs1374384648 1739 dbSNP
rs1341176592 1743 dbSNP
rs996374511 1746 dbSNP
rs749109273 1757 dbSNP
rs1434817734 1760 dbSNP
rs1247905758 1779 dbSNP
rs770012954 1779 dbSNP
rs954835238 1793 dbSNP
rs1447332918 1798 dbSNP
rs1357538242 1800 dbSNP
rs1333648591 1806 dbSNP
rs762306554 1842 dbSNP
rs1279386561 1851 dbSNP
rs1378256128 1853 dbSNP
rs1389944387 1854 dbSNP
rs745326415 1868 dbSNP
rs755747414 1877 dbSNP
rs1385419474 1887 dbSNP
rs1034160371 1903 dbSNP
rs960849177 1904 dbSNP
rs1205128895 1909 dbSNP
rs538370712 1915 dbSNP
rs1482649448 1939 dbSNP
rs1014162338 1946 dbSNP
rs1224370200 1950 dbSNP
rs191134658 1960 dbSNP
rs1359920977 1961 dbSNP
rs1313665110 1969 dbSNP
rs763064543 1971 dbSNP
rs767753221 1978 dbSNP
rs1280941233 1979 dbSNP
rs979625140 1980 dbSNP
rs1306744545 1982 dbSNP
rs766633429 1983 dbSNP
rs1426902906 1986 dbSNP
rs1350875126 1991 dbSNP
rs1163615888 1993 dbSNP
rs1020758490 1996 dbSNP
rs1436339206 1997 dbSNP
rs181687601 1998 dbSNP
rs1471989008 2018 dbSNP
rs1249474554 2021 dbSNP
rs12836942 2026 dbSNP
rs1180786305 2028 dbSNP
rs1201549949 2030 dbSNP
rs1490445402 2031 dbSNP
rs925558399 2039 dbSNP
rs1221109162 2042 dbSNP
rs12836954 2043 dbSNP
rs12836958 2046 dbSNP
rs1320077513 2047 dbSNP
rs1286631349 2049 dbSNP
rs1191610080 2053 dbSNP
rs1229030786 2072 dbSNP
rs1394413245 2073 dbSNP
rs964329838 2082 dbSNP
rs1286968431 2088 dbSNP
rs1407353412 2088 dbSNP
rs968849802 2093 dbSNP
rs1173839910 2094 dbSNP
rs979279371 2098 dbSNP
rs1456725707 2103 dbSNP
rs1346548506 2107 dbSNP
rs1393843207 2114 dbSNP
rs927266557 2117 dbSNP
rs923007955 2119 dbSNP
rs1409188076 2120 dbSNP
rs933127314 2123 dbSNP
rs1433770410 2124 dbSNP
rs937360279 2132 dbSNP
rs1189189152 2140 dbSNP
rs1486738178 2141 dbSNP
rs1244020942 2149 dbSNP
rs759569225 2150 dbSNP
rs767187492 2162 dbSNP
rs1037597110 2163 dbSNP
rs1370937546 2185 dbSNP
rs1234029851 2189 dbSNP
rs905800969 2194 dbSNP
rs1337694067 2195 dbSNP
rs937995783 2197 dbSNP
rs929767164 2199 dbSNP
rs1338051891 2200 dbSNP
rs1046909377 2203 dbSNP
rs1055165966 2203 dbSNP
rs12837254 2211 dbSNP
rs1458874600 2221 dbSNP
rs1430051364 2224 dbSNP
rs1189442755 2225 dbSNP
rs1013637813 2227 dbSNP
rs1246436911 2234 dbSNP
rs888298841 2236 dbSNP
rs1483637910 2237 dbSNP
rs1255886239 2239 dbSNP
rs941104553 2243 dbSNP
rs1039890885 2250 dbSNP
rs902667509 2256 dbSNP
rs1001013084 2258 dbSNP
rs1032545037 2260 dbSNP
rs1362512532 2262 dbSNP
rs1252240620 2266 dbSNP
rs964967498 2268 dbSNP
rs1400919924 2278 dbSNP
rs556374684 2284 dbSNP
rs974814232 2288 dbSNP
rs1463515873 2291 dbSNP
rs185767800 2298 dbSNP
rs1256363991 2302 dbSNP
rs1447457088 2305 dbSNP
rs1388509747 2314 dbSNP
rs761383123 2317 dbSNP
rs1424447735 2325 dbSNP
rs771746847 2328 dbSNP
rs1010797319 2329 dbSNP
rs1484285290 2340 dbSNP
rs1275993872 2342 dbSNP
rs1204825844 2347 dbSNP
rs1340521130 2349 dbSNP
rs1316686461 2350 dbSNP
rs1245135208 2356 dbSNP
rs373656515 2373 dbSNP
rs1168075736 2384 dbSNP
rs1425330509 2385 dbSNP
rs1020433328 2389 dbSNP
rs750664836 2399 dbSNP
rs763668765 2400 dbSNP
rs779714845 2402 dbSNP
rs1307371477 2409 dbSNP
rs983190301 2412 dbSNP
rs77616713 2416 dbSNP
rs190964950 2418 dbSNP
rs978861152 2429 dbSNP
rs763908032 2431 dbSNP
rs941823780 2431 dbSNP
rs1253117429 2436 dbSNP
rs1182147906 2445 dbSNP
rs1325591839 2445 dbSNP
rs1034473958 2448 dbSNP
rs958656950 2450 dbSNP
rs1210061629 2458 dbSNP
rs992837440 2459 dbSNP
rs1263333930 2471 dbSNP
rs1240509347 2480 dbSNP
rs1350611074 2484 dbSNP
rs1287625917 2485 dbSNP
rs772996894 2498 dbSNP
rs1231206935 2503 dbSNP
rs927186198 2520 dbSNP
rs929930554 2526 dbSNP
rs1323889762 2531 dbSNP
rs1272366134 2536 dbSNP
rs1390226579 2537 dbSNP
rs937313190 2540 dbSNP
rs1458860294 2559 dbSNP
rs1488765719 2564 dbSNP
rs983130725 2569 dbSNP
rs1211629045 2571 dbSNP
rs760462816 2588 dbSNP
rs1259592947 2603 dbSNP
rs756746133 2604 dbSNP
rs1471936711 2607 dbSNP
rs1248972892 2615 dbSNP
rs766070073 2647 dbSNP
rs1451422059 2650 dbSNP
rs1264784319 2660 dbSNP
rs1210258620 2668 dbSNP
rs1329221989 2673 dbSNP
rs778442188 2691 dbSNP
rs1425297569 2692 dbSNP
rs896457687 2694 dbSNP
rs1474044112 2702 dbSNP
rs949432692 2711 dbSNP
rs1163217796 2723 dbSNP
rs1042435805 2724 dbSNP
rs1232208879 2731 dbSNP
rs1039387461 2741 dbSNP
rs1458744987 2770 dbSNP
rs921019649 2776 dbSNP
rs1329177083 2784 dbSNP
rs1321804200 2788 dbSNP
rs1437622349 2791 dbSNP
rs933629112 2792 dbSNP
rs1389466645 2793 dbSNP
rs1050735853 2795 dbSNP
rs1383472209 2799 dbSNP
rs1427817190 2806 dbSNP
rs752938903 2807 dbSNP
rs1381665011 2810 dbSNP
rs1298938167 2812 dbSNP
rs1465015514 2813 dbSNP
rs1247043073 2816 dbSNP
rs1206229333 2818 dbSNP
rs1443674016 2832 dbSNP
rs769278711 2843 dbSNP
rs1000982250 2845 dbSNP
rs1342600358 2850 dbSNP
rs1010475406 2859 dbSNP
rs1032514249 2866 dbSNP
rs1299640549 2869 dbSNP
rs1042397351 2871 dbSNP
rs763410652 2876 dbSNP
rs996411527 2888 dbSNP
rs183153247 2902 dbSNP
rs1322040228 2920 dbSNP
rs1428682699 2923 dbSNP
rs954377728 2925 dbSNP
rs764461898 2926 dbSNP
rs1000775957 2931 dbSNP
rs983544866 2932 dbSNP
rs1170810098 2934 dbSNP
rs1014667740 2946 dbSNP
rs1034401965 2950 dbSNP
rs755473254 2956 dbSNP
rs963156210 2957 dbSNP
rs1186327114 2964 dbSNP
rs973229920 2979 dbSNP
rs1237607072 2990 dbSNP
rs927072092 2991 dbSNP
rs958799702 2994 dbSNP
rs1276708800 3022 dbSNP
rs1246726758 3038 dbSNP
rs746118613 3040 dbSNP
rs752112265 3041 dbSNP
rs757322011 3051 dbSNP
rs1349899330 3052 dbSNP
rs1213086691 3059 dbSNP
rs1381423927 3063 dbSNP
rs1284786130 3068 dbSNP
rs1216664034 3069 dbSNP
rs1354057022 3070 dbSNP
rs187610322 3073 dbSNP
rs1264788485 3110 dbSNP
rs73203659 3112 dbSNP
rs1430774566 3115 dbSNP
rs190880477 3116 dbSNP
rs1406806815 3135 dbSNP
rs1186705897 3140 dbSNP
rs139527660 3141 dbSNP
rs1471538108 3144 dbSNP
rs182541184 3147 dbSNP
rs949401213 3153 dbSNP
rs951492699 3154 dbSNP
rs1182868415 3166 dbSNP
rs1223500800 3178 dbSNP
rs1482595783 3178 dbSNP
rs771115532 3178 dbSNP
rs188455264 3179 dbSNP
rs1323670166 3185 dbSNP
rs1362539736 3189 dbSNP
rs1453729916 3193 dbSNP
rs1159326321 3194 dbSNP
rs1362603264 3195 dbSNP
rs1227770685 3200 dbSNP
rs1432958507 3208 dbSNP
rs909790819 3211 dbSNP
rs962539923 3213 dbSNP
rs1042405558 3219 dbSNP
rs975228963 3220 dbSNP
rs1296745936 3222 dbSNP
rs192639814 3226 dbSNP
rs771985411 3236 dbSNP
rs1240856900 3240 dbSNP
rs924027176 3251 dbSNP
rs1288091905 3257 dbSNP
rs1459391428 3260 dbSNP
rs1413600565 3270 dbSNP
rs1345029348 3277 dbSNP
rs1159802013 3278 dbSNP
rs1209564784 3280 dbSNP
rs936721955 3281 dbSNP
rs878858084 3288 dbSNP
rs1249546770 3294 dbSNP
rs1050829887 3300 dbSNP
rs913560623 3321 dbSNP
rs1247479372 3323 dbSNP
rs775290764 3324 dbSNP
rs1467184211 3332 dbSNP
rs760510886 3340 dbSNP
rs1229094710 3343 dbSNP
rs1329016843 3344 dbSNP
rs1305525205 3348 dbSNP
rs368925689 3356 dbSNP
rs763934384 3357 dbSNP
rs1248947449 3361 dbSNP
rs1368802407 3362 dbSNP
rs867425171 3364 dbSNP
rs753465954 3366 dbSNP
rs1438337227 3370 dbSNP
rs1390386276 3371 dbSNP
rs1179751023 3372 dbSNP
rs1456269750 3374 dbSNP
rs761491777 3382 dbSNP
rs1452615412 3384 dbSNP
rs1433534689 3402 dbSNP
rs1173117871 3406 dbSNP
rs1041934942 3416 dbSNP
rs1250154948 3418 dbSNP
rs1359942386 3424 dbSNP
rs900637445 3426 dbSNP
rs904782804 3439 dbSNP
rs1467833828 3446 dbSNP
rs1212925543 3447 dbSNP
rs568515361 3455 dbSNP
rs1296227477 3467 dbSNP
rs1313140586 3477 dbSNP
rs1300935938 3478 dbSNP
rs1232568504 3484 dbSNP
rs1366855849 3494 dbSNP
rs1297918823 3495 dbSNP
rs996765632 3503 dbSNP
rs1395430283 3507 dbSNP
rs749901340 3515 dbSNP
rs1382205895 3522 dbSNP
rs1304501673 3532 dbSNP
rs34393338 3543 dbSNP
rs894673166 3543 dbSNP
rs890729762 3548 dbSNP
rs1014337739 3549 dbSNP
rs1024433303 3552 dbSNP
rs1232895887 3575 dbSNP
rs1451128411 3586 dbSNP
rs1392215912 3587 dbSNP
rs1189501701 3588 dbSNP
rs866770043 3589 dbSNP
rs1313589953 3590 dbSNP
rs1004627298 3599 dbSNP
rs1483829919 3614 dbSNP
rs1014637016 3616 dbSNP
rs73480481 3619 dbSNP
rs994554420 3622 dbSNP
rs1457546589 3623 dbSNP
rs962966955 3628 dbSNP
rs975324430 3631 dbSNP
rs921083608 3640 dbSNP
rs1467563750 3641 dbSNP
rs1034118935 3644 dbSNP
rs1183638218 3644 dbSNP
rs1324170481 3644 dbSNP
rs958548127 3647 dbSNP
rs1426031685 3655 dbSNP
rs1431371106 3660 dbSNP
rs781676507 3684 dbSNP
rs1169460775 3697 dbSNP
rs1168516663 3701 dbSNP
rs917167623 3702 dbSNP
rs1371566662 3708 dbSNP
rs1166940341 3709 dbSNP
rs780353957 3722 dbSNP
rs748986559 3743 dbSNP
rs1186487930 3753 dbSNP
rs768542756 3759 dbSNP
rs1253071975 3762 dbSNP
rs1195594582 3765 dbSNP
rs945029534 3766 dbSNP
rs778681981 3777 dbSNP
rs748165320 3778 dbSNP
rs1244835438 3782 dbSNP
rs1320638955 3811 dbSNP
rs936690965 3812 dbSNP
rs936222247 3818 dbSNP
rs1411654220 3822 dbSNP
rs2295339 3827 dbSNP
rs1053772896 3834 dbSNP
rs145259177 3837 dbSNP
rs1394550501 3845 dbSNP
rs894642207 3845 dbSNP
rs1471891752 3854 dbSNP
rs1165259307 3863 dbSNP
rs1458455133 3864 dbSNP
rs756538463 3866 dbSNP
rs932155434 3869 dbSNP
rs1473819982 3871 dbSNP
rs1413365866 3876 dbSNP
rs1181475885 3884 dbSNP
rs879059207 3899 dbSNP
rs1436464309 3905 dbSNP
rs1052396056 3906 dbSNP
rs1210119411 3913 dbSNP
rs778335195 3929 dbSNP
rs1467633199 3938 dbSNP
rs1270655539 3943 dbSNP
rs890710707 3959 dbSNP
rs1329718314 3961 dbSNP
rs1045781022 3965 dbSNP
rs887202880 3966 dbSNP
rs1036623589 3970 dbSNP
rs1004192097 3980 dbSNP
rs898808806 3982 dbSNP
rs1294360862 3983 dbSNP
rs1394034518 3993 dbSNP
rs1318184223 3994 dbSNP
rs1458908234 3998 dbSNP
rs1219610579 3999 dbSNP
rs994529635 4004 dbSNP
rs1333320372 4008 dbSNP
rs1034090729 4013 dbSNP
rs1221401482 4020 dbSNP
rs1453357176 4023 dbSNP
rs1250773170 4024 dbSNP
rs1210010355 4028 dbSNP
rs1017330214 4030 dbSNP
rs1283444960 4043 dbSNP
rs1203379550 4044 dbSNP
rs1346853296 4046 dbSNP
rs958736017 4051 dbSNP
rs1275154323 4054 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 8239.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucuccguccaagGACCUAGUa 5'
                      :||||||| 
Target 5' -----------gUUGGAUCAg 3'
 		1 - 10
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001039590 | 3UTR | CACCCACUGCACUCUGCAACCAGUGUUGCCUGCCUCAUGGCAGUUGGAUCAGCUCCUUUACAAAAAAGAAAAAAAAAAAACCAACAGCAACAAAACAGAGCCCAUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000324545.8 | 3UTR | GUUGGAUCAGCUCCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.569 1.9e-3 0.538 3.3e-3 24 Click to see details
GSE27834 Pluripotent stem cells -0.555 1.3e-2 -0.556 1.3e-2 16 Click to see details
GSE28260 Renal cortex and medulla 0.491 4.4e-2 0.268 1.9e-1 13 Click to see details
GSE19350 CNS germ cell tumors -0.501 4.9e-2 -0.182 2.9e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells -0.298 7.9e-2 -0.412 2.3e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.212 1.5e-1 0.188 1.8e-1 25 Click to see details
GSE21687 Ependynoma primary tumors -0.102 2.1e-1 -0.040 3.8e-1 64 Click to see details
GSE17498 Multiple myeloma 0.13 2.1e-1 0.157 1.7e-1 40 Click to see details
GSE21849 B cell lymphoma -0.145 2.3e-1 -0.091 3.2e-1 29 Click to see details
GSE19536 Breast cancer 0.072 2.4e-1 0.099 1.6e-1 100 Click to see details
GSE38226 Liver fibrosis -0.15 2.6e-1 -0.174 2.3e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.113 3.0e-1 -0.015 4.7e-1 25 Click to see details
GSE19783 ER- ER- breast cancer 0.031 3.9e-1 0.054 3.2e-1 79 Click to see details
GSE32688 Pancreatic cancer -0.033 4.3e-1 -0.012 4.7e-1 32 Click to see details
GSE19783 ER+ ER+ breast cancer -0.038 4.4e-1 0.009 4.8e-1 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.032 4.5e-1 -0.119 3.1e-1 20 Click to see details
GSE17306 Multiple myeloma 0.017 4.5e-1 0.113 2.2e-1 49 Click to see details
GSE14794 Lymphoblastoid cells -0.01 4.6e-1 -0.026 4.0e-1 90 Click to see details
GSE42095 Differentiated embryonic stem cells 0.013 4.8e-1 0.000 5.0e-1 23 Click to see details
GSE42095 Differentiated embryonic stem cells 0.013 4.8e-1 0.000 5.0e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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