miRTarBase - #MIRT513640


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pre-miRNA Information
pre-miRNA hsa-mir-1199   
Genomic Coordinates chr19: 14073361 - 14073479
Description Homo sapiens miR-1199 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1199-5p
Sequence 21| CCUGAGCCCGGGCCGCGCAG |40
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1438702968 5 dbSNP
rs757334792 6 dbSNP
rs1159152107 9 dbSNP
rs1365081692 10 dbSNP
rs1451155091 12 dbSNP
rs934105122 17 dbSNP
Putative Targets

Gene Information
Gene Symbol TP53INP2   
Synonyms C20orf110, DOR, PIG-U, PIGU, PINH, dJ1181N3.1
Description tumor protein p53 inducible nuclear protein 2
Transcript NM_021202   
Expression
Putative miRNA Targets on TP53INP2
3'UTR of TP53INP2
(miRNA target sites are highlighted)		 
>TP53INP2|NM_021202|3'UTR
   1 GCGTCCACCGGCCGCGCCACGAACCCCTTGCCGATCCCGATCCCTGTCGGGCTCCTCCGACTCCTCGGGCTGGACACCGA
  81 AACCTCCCTTCTTAAAGCGTGTGAGGTTGGGTGATAGCCGTTCCTTCCCCGACACCCTCAATTTCCCCATCTCTGATCCT
 161 CTAATCTGCCTCTGAACCCATTCACCCTTCACCCTCACTCCTGGTCCCCATACCCAGCATCTAATCATCCATGCCCCCTA
 241 CTCCTGGCCCCTCCATCCTTTCTTCTCTGGTCCCCATCCCTGTCTCTCCCTTTCACCCTTGCCCTCCAGTCCTCTACCTC
 321 TGGCCTGCCCCTATTTCTGAAAGCTTCTTCCAGTCCCTGATCTGGCTCATTCCCCACCTTCAACTCCCACCTTACATGTC
 401 TCACACTATCCCATGGTTGGCATTACACTCACTCCTGTTCCCTTATTCTTCATTCCCAGTAATTCCCTACCAAATGGTGG
 481 GGACCCTGAGCCCAGCTCTGACCAGGTAGAGCCTGTGCAGCCTGGGCTGCTGTCATTGCCCTCCAGTAAGGGCTCAGGGT
 561 TTTGCTTTTAGTCTCCCCTTCCTTCTGCCTTGGGGGCGGTACTCTGTGGAGCTGCTTAGGCCTGGAAAGGTACAGTATGT
 641 AGAAGAGGACTGTGAGACGTGAGTTAGAGGGAGAAGATGGAGGGAATCTAGGGAACGAGGCAGCCTATTGGAGATGCGGA
 721 CAGGACAGACACGTTGAGAAGCTGCAGGGAGCAGGGCACCAAGGGAGTGTGCACTGTGCTTGCTCAGAGAGGCCAAACCC
 801 TGCTCCCAGGCTGAAGCCTGGAGTCTGCCCCCACTTCCCTTTTCTATAATCCACCCTTCTGCAGGCCCTGAAATCTGAAG
 881 GGCTTAGTTAGTACCTTGCCACTCTACCCCCAACACGTCACCCGAGTAGAAGCTGGGCAAGGCCCTACCATCCTGGCCGT
 961 CTGTTCACAAGCCCAAGGTGCTAGAACTAGCTTAGGAGACATGCAGGCCACAGGGCTTCTAGGCAGGGAAAGGGCACACA
1041 CCCTAGGTCAGCGTGCAGAGCAGTGATGCTGGAGGACACACCATGGGGTGAAGCCATCCCAAGGCTGACAGCTCAGTCTT
1121 CACCTTGCCTCTGGCCTTGTATTTCACACCCTGCTCAGTATGGCTAGCCAGCAGTCCTGAGTAGGAGTCCAGGACTCCCA
1201 CTGTCTCAATCTGCAAATTGTTCCTATCCAGGTTCAGGGCCTTCAGGGGGCCTCTTTTCATTTTCTCCCACAGGCCTCTC
1281 TTTCTTTCTAGGTTGCTGGGGAGAAATGGGTACCCTATGATCCCCCTCCCCTTCTCCTCCAGTAAATACCTGGAAGAGGG
1361 AACCTGAATCCCTGGGGGAGACAGAAGGGGCAGGGGCCACCAGCCTCCCCTTCTTGTGGTGAGACTGAATTTTGGGCTCA
1441 GACACCAGCAACAGCCTCTTGGGATGCCCTGAGTTGCTTCCCATTTCCTCTTTCTAGCCGTCCTTTTCTAGTGTGTGCTC
1521 ACTCTTCCTAGGAACTTTTAAGACTTCTTGGTACCTATGAACATAGGTCCTCCCCTCACCCCAACTCTAGGTTTCCAGGC
1601 CTCACAGCCAAGCTGAAGCTTGGAGAAAACTCTGCATTCCCATGAGGGCAAAGGCAGCTGCCCTCCCTGACCCTATAGCC
1681 CCAGGCCTCATGGGGGGTATGTGGGGAAGGGATGGGGTATCCCCATGGATGCTGGGATGAGGACAGAGGAAGACCTGATG
1761 GGGTCTCCTATTCCAGGGAATAAGCCAAATTAACACTAAAAACGGATCAAAGCTCCCACGCCAGTCCACTAGGGCCCCAG
1841 TAGTTGACAGCCTTGCTCCTCTCCCAAGTTCTCCTTCAGAACCTAGTTGCTTTTATTCTTCCAGCTACCACTTGGGCACT
1921 TCACAGCCAGCCTAGGGTCTTCGGCACCTCCAAGAGCTGAATCTCCCTCCAACCCTTCTTGCCTACTCCTCACTGCCAGC
2001 TGGGACCTAGGCTCAGTCCTGTGTGGTGCCCATGATCCTTCTGGTGGGGGAAGAGTTTAAGTTATAGGGCATTTGGCTCA
2081 AATTTTAAAAGGCCTTTTGTTTACCTATATTTCTGGAGGCTCCTGTATTCTAGAACCCAATCTCTCACCTGCTTGGTTGC
2161 AAGGCTCATATTTTTTTGTACCTTTCCTATAGATTCTGTAGCATTTGAGTGTGGCAATATTTTAATTGTGTATAGATTTC
2241 TAAGAACCAACACTACTCAGTCTCCTGCTAGTCTGACTCCTGAAGCATCAGCCCTTGTCATACTGTATTGACTGTGTACG
2321 TGCCTTTCACCTTGAGCATGCTTCAGGATTTTTTTTTAAACCACAGAACTTGAATACATGAGGGAACCAGAGTTCAAAGT
2401 CCTATGCAACCTTAGGAGGGGGTTAGAGAGTCTGTTTTGATTGATGTTTTCTGAGGCCCTAGAGGAGTTTGTATCAATTT
2481 GTGAGTATTAATGTCAGTACTACCAGCACTTTGCCAAAACTGTCAGAGGGACCCGTTTCTAGAGTGAGTCCCAGTTACAT
2561 CAAACAGTGACTTCCAGTTATTCCCCAGTAAGTCTGAGTGGTTCCTTCAAGCTGGGTGTCTTTCCAGCCTTTGCCAGTCT
2641 AGCCCCAGCAGGGCACCGTGTATGAATGCAGTTTGGTGCTGTTTTAGAGTATGCCTGCTCCCCAGCCCCCTGCCTGGAAC
2721 CCTCTGAGCAACTTGCTCTGACCTATAATGTCTTAGGTGCAACACGGACCCCACCAGAGCTCTTGGATACCCCCCTAGAT
2801 CCATGTGGCTTTATGTGAGGGGACTGAATGCAGACACACCATAGCCCCCTTCTACTACTTTCCCTCTCGCCCTGCCACCT
2881 AGTTCCACATGGAACCAACAAGTTGAGTGCATCCCTGTTGGGTGTTTTGTGTTGAGACTGGCTGAAATGAGGAGACTTTG
2961 ACCATGTGACGTGTCAACAGACTCAAGGAGACAACCACCTCAACTGGGTCATGTGGCATGCCTGTGTATGTGTGTAACAG
3041 AATTCTGATTGTTAGACTGTAATGCTATTCCTCTATGGGAGAAAAAAATTAATATAAAGAAAAACAAATAAAAATATATT
3121 TAAAGCACATGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaCG-CGCCGGGCCCGAGUCc 5'
            || | | ||: ||||||| 
Target 5' caGCTGGGACCTAGGCTCAGt 3'
 1997 - 2017 154.00 -20.50
2 
miRNA  3' gacgcgccGGGCCCGAGUCc 5'
                  :::|||||||| 
Target 5' gactgaatTTTGGGCTCAGa 3'
 1423 - 1442 148.00 -19.60
3 
miRNA  3' gacgcGCCGGGCCCGAGUCc 5'
               | |:  |||||||| 
Target 5' ccctcCAGTAAGGGCTCAGg 3'
 539 - 558 147.00 -20.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30511443 28 COSMIC
COSN30161897 35 COSMIC
COSN30126522 45 COSMIC
COSN31535984 55 COSMIC
COSN15854420 117 COSMIC
COSN20079840 121 COSMIC
COSN30144057 172 COSMIC
COSN16361556 268 COSMIC
COSN7089820 521 COSMIC
COSN31481465 918 COSMIC
COSN10014759 925 COSMIC
COSN30173612 1335 COSMIC
COSN31528922 1360 COSMIC
COSN26555499 1467 COSMIC
COSN31578847 1516 COSMIC
COSN30173694 1548 COSMIC
COSN30173742 1570 COSMIC
COSN31528630 1690 COSMIC
COSN31520365 1742 COSMIC
COSN30173562 1878 COSMIC
COSN26640627 1949 COSMIC
COSN20116407 1968 COSMIC
COSN26466297 1995 COSMIC
COSN1870260 2038 COSMIC
COSN26563007 2044 COSMIC
COSN9126514 2076 COSMIC
COSN20730834 2240 COSMIC
COSN31481038 2290 COSMIC
COSN22779486 2307 COSMIC
COSN17589084 2335 COSMIC
COSN31548550 2452 COSMIC
COSN23289032 2662 COSMIC
COSN19655625 2731 COSMIC
COSN30543467 2796 COSMIC
COSN26555500 2816 COSMIC
COSN31521183 2840 COSMIC
COSN31537714 2870 COSMIC
COSN28533667 2962 COSMIC
COSN31547776 3085 COSMIC
COSN14438541 3098 COSMIC
COSN26647830 3100 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs563406729 3 dbSNP
rs1316777527 4 dbSNP
rs771497872 10 dbSNP
rs781702225 11 dbSNP
rs1242597879 14 dbSNP
rs368017515 15 dbSNP
rs1006759643 16 dbSNP
rs770499577 17 dbSNP
rs898264934 21 dbSNP
rs776948100 23 dbSNP
rs1235937021 25 dbSNP
rs770585406 31 dbSNP
rs1300414749 34 dbSNP
rs768806408 37 dbSNP
rs774371779 38 dbSNP
rs1422578718 40 dbSNP
rs1384866705 43 dbSNP
rs761739203 44 dbSNP
rs1369565695 45 dbSNP
rs1461508954 47 dbSNP
rs1025314816 50 dbSNP
rs760129169 53 dbSNP
rs1269432404 55 dbSNP
rs1399702527 57 dbSNP
rs1168599012 60 dbSNP
rs983663487 61 dbSNP
rs1329286292 64 dbSNP
rs1479324955 67 dbSNP
rs1378712463 69 dbSNP
rs1035266363 93 dbSNP
rs1198691530 97 dbSNP
rs1204160073 100 dbSNP
rs1281777234 102 dbSNP
rs960848445 116 dbSNP
rs1444484681 118 dbSNP
rs1253036735 121 dbSNP
rs765696732 132 dbSNP
rs916628230 139 dbSNP
rs1457015452 152 dbSNP
rs948240564 160 dbSNP
rs1204999165 162 dbSNP
rs1345026025 169 dbSNP
rs1255355404 170 dbSNP
rs1237276978 176 dbSNP
rs1230915108 187 dbSNP
rs1337342489 191 dbSNP
rs530477252 194 dbSNP
rs867743447 198 dbSNP
rs925428927 200 dbSNP
rs868121382 207 dbSNP
rs979803418 209 dbSNP
rs923963978 216 dbSNP
rs935354032 217 dbSNP
rs1402927404 218 dbSNP
rs1172523864 225 dbSNP
rs1464948259 234 dbSNP
rs763233128 237 dbSNP
rs6088587 239 dbSNP
rs936931371 251 dbSNP
rs1235986715 256 dbSNP
rs1189125459 258 dbSNP
rs1442519458 258 dbSNP
rs546037219 260 dbSNP
rs1198705160 261 dbSNP
rs891073328 266 dbSNP
rs942489512 268 dbSNP
rs571302272 269 dbSNP
rs1239156245 272 dbSNP
rs1351146520 272 dbSNP
rs898207243 274 dbSNP
rs1307361747 283 dbSNP
rs1404538869 298 dbSNP
rs538740256 299 dbSNP
rs888842219 303 dbSNP
rs1354613520 304 dbSNP
rs1025853350 315 dbSNP
rs886764515 318 dbSNP
rs1002522794 319 dbSNP
rs1007707922 327 dbSNP
rs1412823194 331 dbSNP
rs1290187914 332 dbSNP
rs1350548673 335 dbSNP
rs1037517899 336 dbSNP
rs1277270350 342 dbSNP
rs1035216611 347 dbSNP
rs960961676 373 dbSNP
rs1378802826 381 dbSNP
rs1164669485 390 dbSNP
rs1472904736 396 dbSNP
rs751826371 407 dbSNP
rs1200695994 414 dbSNP
rs1280025129 418 dbSNP
rs1184767457 422 dbSNP
rs1489270876 434 dbSNP
rs553762616 435 dbSNP
rs1026153564 438 dbSNP
rs41290898 441 dbSNP
rs1230281199 463 dbSNP
rs1214959701 464 dbSNP
rs979533067 468 dbSNP
rs796895893 477 dbSNP
rs757223982 478 dbSNP
rs986819835 485 dbSNP
rs1472556345 509 dbSNP
rs969528805 514 dbSNP
rs182563807 531 dbSNP
rs942603549 533 dbSNP
rs1412618931 537 dbSNP
rs925482902 541 dbSNP
rs1478523042 546 dbSNP
rs1423660021 549 dbSNP
rs1192890023 552 dbSNP
rs1476780236 553 dbSNP
rs1039902091 559 dbSNP
rs1172251435 560 dbSNP
rs536917852 578 dbSNP
rs919765487 595 dbSNP
rs1289435339 600 dbSNP
rs1374598631 607 dbSNP
rs1320135844 608 dbSNP
rs6142228 620 dbSNP
rs1278887732 630 dbSNP
rs1218616771 634 dbSNP
rs111756231 635 dbSNP
rs1432689105 642 dbSNP
rs1349606182 645 dbSNP
rs1321198925 651 dbSNP
rs1309769937 659 dbSNP
rs931170789 660 dbSNP
rs538373099 661 dbSNP
rs958186424 666 dbSNP
rs1046795995 671 dbSNP
rs886882163 672 dbSNP
rs576562824 674 dbSNP
rs1056737683 679 dbSNP
rs896708252 689 dbSNP
rs1332360802 691 dbSNP
rs1192030954 694 dbSNP
rs1233494372 697 dbSNP
rs1258866542 697 dbSNP
rs185280682 699 dbSNP
rs1281368471 700 dbSNP
rs1220265445 701 dbSNP
rs1367382105 703 dbSNP
rs145864814 705 dbSNP
rs1448591976 709 dbSNP
rs1346164190 716 dbSNP
rs753713441 718 dbSNP
rs914133030 731 dbSNP
rs576876189 733 dbSNP
rs541145029 734 dbSNP
rs1360331586 739 dbSNP
rs968231169 743 dbSNP
rs1413810170 747 dbSNP
rs1001464843 751 dbSNP
rs1031070022 756 dbSNP
rs1441852835 758 dbSNP
rs956792078 760 dbSNP
rs1178200197 765 dbSNP
rs1479713399 765 dbSNP
rs1239240468 770 dbSNP
rs1211484143 771 dbSNP
rs1312096962 775 dbSNP
rs190587008 786 dbSNP
rs1194622593 792 dbSNP
rs1269514697 799 dbSNP
rs754966270 808 dbSNP
rs561001669 822 dbSNP
rs964078336 829 dbSNP
rs149017815 831 dbSNP
rs1302894755 833 dbSNP
rs1447277967 841 dbSNP
rs1451564373 848 dbSNP
rs993252966 850 dbSNP
rs1420098171 857 dbSNP
rs143823869 870 dbSNP
rs895705527 874 dbSNP
rs931140828 887 dbSNP
rs1416109097 907 dbSNP
rs1182503715 908 dbSNP
rs1461383750 911 dbSNP
rs1047355529 916 dbSNP
rs908270053 917 dbSNP
rs938441548 918 dbSNP
rs1488833962 919 dbSNP
rs1002325584 920 dbSNP
rs1236493594 922 dbSNP
rs1392246433 923 dbSNP
rs1032395400 924 dbSNP
rs1227250766 925 dbSNP
rs1324640380 927 dbSNP
rs6088588 934 dbSNP
rs561068976 943 dbSNP
rs958209363 944 dbSNP
rs1359706758 947 dbSNP
rs1298749205 956 dbSNP
rs866226637 957 dbSNP
rs879867791 959 dbSNP
rs151024162 960 dbSNP
rs1165664570 963 dbSNP
rs1225844205 970 dbSNP
rs1415703120 981 dbSNP
rs1267810927 982 dbSNP
rs914041470 982 dbSNP
rs1262993232 987 dbSNP
rs955004544 990 dbSNP
rs1489634565 997 dbSNP
rs1265680447 1002 dbSNP
rs1220316901 1012 dbSNP
rs116891932 1019 dbSNP
rs571429352 1039 dbSNP
rs528796852 1042 dbSNP
rs540276762 1046 dbSNP
rs182762631 1053 dbSNP
rs1339738332 1054 dbSNP
rs1001015495 1055 dbSNP
rs1293255610 1056 dbSNP
rs1251231243 1060 dbSNP
rs538702013 1063 dbSNP
rs1062820 1065 dbSNP
rs1391107094 1079 dbSNP
rs1294363837 1085 dbSNP
rs1461081300 1086 dbSNP
rs1392437744 1087 dbSNP
rs1466382737 1089 dbSNP
rs756047152 1099 dbSNP
rs1031184048 1107 dbSNP
rs1172892606 1112 dbSNP
rs956737477 1119 dbSNP
rs1466665442 1134 dbSNP
rs1008311732 1151 dbSNP
rs80325451 1152 dbSNP
rs964062471 1162 dbSNP
rs1262143213 1163 dbSNP
rs758221869 1164 dbSNP
rs187313205 1177 dbSNP
rs6060004 1178 dbSNP
rs1168228557 1185 dbSNP
rs1268450973 1196 dbSNP
rs1190316592 1209 dbSNP
rs1370052809 1210 dbSNP
rs746690164 1215 dbSNP
rs952752014 1217 dbSNP
rs1316671564 1218 dbSNP
rs1249557599 1226 dbSNP
rs1235256870 1229 dbSNP
rs929155927 1245 dbSNP
rs770282699 1251 dbSNP
rs895621224 1255 dbSNP
rs1369048089 1257 dbSNP
rs950038373 1261 dbSNP
rs1447632006 1276 dbSNP
rs1166699741 1279 dbSNP
rs1395804499 1279 dbSNP
rs982601580 1283 dbSNP
rs908385075 1288 dbSNP
rs1378621178 1291 dbSNP
rs1044698602 1295 dbSNP
rs938552566 1300 dbSNP
rs992525902 1304 dbSNP
rs1391693042 1309 dbSNP
rs546866016 1319 dbSNP
rs193279839 1321 dbSNP
rs1002167141 1322 dbSNP
rs948390214 1324 dbSNP
rs1320867358 1331 dbSNP
rs1361679821 1340 dbSNP
rs1380947325 1354 dbSNP
rs1247756431 1357 dbSNP
rs1202146270 1361 dbSNP
rs550866753 1364 dbSNP
rs6060005 1365 dbSNP
rs1231816456 1380 dbSNP
rs1355516334 1381 dbSNP
rs1311772123 1383 dbSNP
rs1447748902 1389 dbSNP
rs1043130899 1394 dbSNP
rs1032439468 1398 dbSNP
rs1398361757 1420 dbSNP
rs904073597 1421 dbSNP
rs555232109 1425 dbSNP
rs1312731848 1431 dbSNP
rs75027744 1452 dbSNP
rs1433258955 1484 dbSNP
rs576708386 1488 dbSNP
rs1382501666 1489 dbSNP
rs1158903294 1494 dbSNP
rs568629746 1500 dbSNP
rs1009633923 1501 dbSNP
rs1271305643 1511 dbSNP
rs1442427103 1513 dbSNP
rs1331363049 1522 dbSNP
rs1209583798 1524 dbSNP
rs1021161586 1528 dbSNP
rs1052728491 1530 dbSNP
rs112386864 1532 dbSNP
rs955036074 1542 dbSNP
rs537750012 1549 dbSNP
rs11551615 1551 dbSNP
rs1293235907 1558 dbSNP
rs1413429444 1560 dbSNP
rs183847254 1564 dbSNP
rs1299161581 1577 dbSNP
rs1399822521 1585 dbSNP
rs776168266 1586 dbSNP
rs1472854821 1599 dbSNP
rs1187188386 1612 dbSNP
rs140359653 1630 dbSNP
rs1019689140 1631 dbSNP
rs377186486 1634 dbSNP
rs763582863 1646 dbSNP
rs1214796844 1648 dbSNP
rs1344166036 1655 dbSNP
rs1451193481 1656 dbSNP
rs996829280 1659 dbSNP
rs1027407241 1660 dbSNP
rs1335581985 1668 dbSNP
rs1403393524 1672 dbSNP
rs1414671926 1674 dbSNP
rs952619555 1676 dbSNP
rs146517195 1677 dbSNP
rs74491571 1679 dbSNP
rs1229009344 1681 dbSNP
rs1306403118 1692 dbSNP
rs1325002434 1692 dbSNP
rs1350556324 1693 dbSNP
rs3746454 1695 dbSNP
rs1405563943 1698 dbSNP
rs3746453 1701 dbSNP
rs1162159982 1707 dbSNP
rs150150822 1721 dbSNP
rs768328229 1722 dbSNP
rs188019813 1723 dbSNP
rs1474315387 1724 dbSNP
rs1485906440 1728 dbSNP
rs1248198630 1730 dbSNP
rs978413793 1736 dbSNP
rs1469058083 1748 dbSNP
rs774369297 1750 dbSNP
rs935888275 1760 dbSNP
rs934375434 1778 dbSNP
rs1052673279 1781 dbSNP
rs1255396439 1789 dbSNP
rs893806957 1798 dbSNP
rs1276953590 1801 dbSNP
rs892743935 1803 dbSNP
rs1177215301 1804 dbSNP
rs138591745 1805 dbSNP
rs1448367462 1806 dbSNP
rs762161961 1809 dbSNP
rs767481643 1820 dbSNP
rs1408109114 1821 dbSNP
rs1427062413 1822 dbSNP
rs1177839455 1829 dbSNP
rs750566343 1838 dbSNP
rs1396046415 1843 dbSNP
rs1434563686 1844 dbSNP
rs1191932487 1845 dbSNP
rs759439478 1846 dbSNP
rs1311450263 1852 dbSNP
rs149310945 1856 dbSNP
rs1443593880 1868 dbSNP
rs1041246200 1875 dbSNP
rs890631749 1876 dbSNP
rs899880162 1880 dbSNP
rs1235480973 1890 dbSNP
rs1300829725 1896 dbSNP
rs1241814905 1901 dbSNP
rs11551614 1907 dbSNP
rs144629520 1911 dbSNP
rs547965599 1913 dbSNP
rs1221138008 1919 dbSNP
rs1360822702 1922 dbSNP
rs565820110 1938 dbSNP
rs1433893137 1941 dbSNP
rs1302318780 1942 dbSNP
rs1004194082 1943 dbSNP
rs1441756963 1944 dbSNP
rs377699792 1965 dbSNP
rs1015442575 1973 dbSNP
rs1483966381 1974 dbSNP
rs1239734397 1975 dbSNP
rs1212158831 1977 dbSNP
rs1485566027 1982 dbSNP
rs973608166 1984 dbSNP
rs1342736089 1986 dbSNP
rs1218397225 1988 dbSNP
rs529707367 1990 dbSNP
rs1305754103 1994 dbSNP
rs1027316725 1998 dbSNP
rs1221578684 2004 dbSNP
rs1231785883 2006 dbSNP
rs547825223 2019 dbSNP
rs567459785 2022 dbSNP
rs959961227 2024 dbSNP
rs765121254 2037 dbSNP
rs1373452582 2050 dbSNP
rs137866411 2054 dbSNP
rs1023224109 2056 dbSNP
rs969958705 2057 dbSNP
rs537310203 2066 dbSNP
rs971275869 2068 dbSNP
rs1346020443 2071 dbSNP
rs980370152 2079 dbSNP
rs1417421423 2082 dbSNP
rs1415999192 2085 dbSNP
rs1189318047 2088 dbSNP
rs1475153166 2091 dbSNP
rs978912816 2092 dbSNP
rs1196293037 2093 dbSNP
rs1486359499 2094 dbSNP
rs935941130 2099 dbSNP
rs559231946 2108 dbSNP
rs1323041351 2110 dbSNP
rs1273249508 2121 dbSNP
rs925752639 2123 dbSNP
rs1410990267 2141 dbSNP
rs955670658 2147 dbSNP
rs1170425358 2151 dbSNP
rs915253160 2161 dbSNP
rs192164729 2166 dbSNP
rs570698977 2169 dbSNP
rs1352828369 2171 dbSNP
rs1382588436 2172 dbSNP
rs1360947288 2178 dbSNP
rs988492284 2181 dbSNP
rs1288539910 2183 dbSNP
rs914125351 2187 dbSNP
rs1396842317 2188 dbSNP
rs1438779719 2188 dbSNP
rs1165735033 2199 dbSNP
rs944278446 2202 dbSNP
rs1326663123 2209 dbSNP
rs1196399547 2212 dbSNP
rs890508124 2218 dbSNP
rs372855142 2226 dbSNP
rs1184456541 2227 dbSNP
rs1439008462 2236 dbSNP
rs1300931212 2243 dbSNP
rs1212522359 2247 dbSNP
rs1331948915 2249 dbSNP
rs1259947289 2256 dbSNP
rs921429601 2262 dbSNP
rs1306749780 2274 dbSNP
rs1293154082 2276 dbSNP
rs1380804020 2277 dbSNP
rs6142229 2281 dbSNP
rs1373465059 2285 dbSNP
rs534929737 2288 dbSNP
rs900677228 2292 dbSNP
rs932865549 2301 dbSNP
rs1440280205 2304 dbSNP
rs1048939115 2311 dbSNP
rs761020665 2313 dbSNP
rs1170188774 2318 dbSNP
rs888559379 2320 dbSNP
rs1027831218 2321 dbSNP
rs1004141725 2329 dbSNP
rs1037003619 2330 dbSNP
rs6142230 2332 dbSNP
rs950392756 2341 dbSNP
rs866307116 2343 dbSNP
rs1455803239 2345 dbSNP
rs1004933164 2346 dbSNP
rs1192557753 2346 dbSNP
rs7344208 2347 dbSNP
rs1023959009 2349 dbSNP
rs971575956 2349 dbSNP
rs1215065865 2358 dbSNP
rs752655939 2362 dbSNP
rs1249473008 2373 dbSNP
rs1235150696 2380 dbSNP
rs7344213 2383 dbSNP
rs1304472158 2389 dbSNP
rs1014125490 2393 dbSNP
rs758133929 2396 dbSNP
rs6141507 2403 dbSNP
rs574545865 2406 dbSNP
rs1330959594 2408 dbSNP
rs6141508 2412 dbSNP
rs913129235 2415 dbSNP
rs1396413158 2425 dbSNP
rs1296892490 2430 dbSNP
rs1253110578 2433 dbSNP
rs1396032623 2440 dbSNP
rs777630871 2442 dbSNP
rs945409262 2444 dbSNP
rs7344244 2456 dbSNP
rs1181903009 2461 dbSNP
rs375752469 2461 dbSNP
rs1417935326 2466 dbSNP
rs1475981416 2466 dbSNP
rs911880546 2470 dbSNP
rs1202061247 2472 dbSNP
rs557039620 2476 dbSNP
rs1186445729 2478 dbSNP
rs1039087176 2480 dbSNP
rs1345984298 2481 dbSNP
rs1417905448 2482 dbSNP
rs895203549 2484 dbSNP
rs1407585703 2493 dbSNP
rs1239874082 2500 dbSNP
rs1033150138 2504 dbSNP
rs1335191532 2505 dbSNP
rs955785671 2514 dbSNP
rs988441284 2517 dbSNP
rs751170239 2518 dbSNP
rs1312641808 2527 dbSNP
rs1432555357 2532 dbSNP
rs1386693456 2533 dbSNP
rs886662741 2535 dbSNP
rs142391734 2536 dbSNP
rs1005115018 2546 dbSNP
rs184179719 2551 dbSNP
rs59396124 2555 dbSNP
rs1475486526 2561 dbSNP
rs756996098 2570 dbSNP
rs752610894 2602 dbSNP
rs1185535322 2605 dbSNP
rs1448455283 2616 dbSNP
rs565212105 2617 dbSNP
rs1286632860 2618 dbSNP
rs145963478 2619 dbSNP
rs1269392227 2623 dbSNP
rs1259020897 2634 dbSNP
rs971076605 2644 dbSNP
rs921553310 2651 dbSNP
rs1359721168 2652 dbSNP
rs932788849 2654 dbSNP
rs780533011 2659 dbSNP
rs957209995 2680 dbSNP
rs909936996 2684 dbSNP
rs541272073 2688 dbSNP
rs1333583302 2691 dbSNP
rs1211427000 2696 dbSNP
rs989952731 2701 dbSNP
rs1269706760 2703 dbSNP
rs188552170 2713 dbSNP
rs745327640 2715 dbSNP
rs967724982 2725 dbSNP
rs1476286489 2729 dbSNP
rs1242451447 2734 dbSNP
rs1447218490 2745 dbSNP
rs940113502 2748 dbSNP
rs1246338836 2753 dbSNP
rs1215644293 2759 dbSNP
rs529713667 2760 dbSNP
rs1273134407 2765 dbSNP
rs548280257 2766 dbSNP
rs569531692 2767 dbSNP
rs1014239968 2768 dbSNP
rs986733740 2774 dbSNP
rs911916111 2775 dbSNP
rs1327430901 2776 dbSNP
rs1417222800 2788 dbSNP
rs555024269 2790 dbSNP
rs974803366 2790 dbSNP
rs191735700 2792 dbSNP
rs921998194 2795 dbSNP
rs1167105077 2800 dbSNP
rs1385871822 2802 dbSNP
rs1388566792 2810 dbSNP
rs1400366136 2816 dbSNP
rs1044683939 2846 dbSNP
rs1317325480 2847 dbSNP
rs1252420206 2851 dbSNP
rs184650054 2851 dbSNP
rs1220079308 2854 dbSNP
rs1440054775 2855 dbSNP
rs747730876 2858 dbSNP
rs905796392 2861 dbSNP
rs189984598 2865 dbSNP
rs45458901 2869 dbSNP
rs749814969 2870 dbSNP
rs1230857544 2872 dbSNP
rs1369669617 2875 dbSNP
rs1323297741 2876 dbSNP
rs1280796270 2881 dbSNP
rs906864889 2886 dbSNP
rs1450595379 2889 dbSNP
rs1328036233 2899 dbSNP
rs1408024787 2903 dbSNP
rs1350874588 2905 dbSNP
rs1001177544 2910 dbSNP
rs1204214809 2911 dbSNP
rs36083782 2913 dbSNP
rs955735553 2914 dbSNP
rs1175804419 2949 dbSNP
rs1034112304 2953 dbSNP
rs1486885109 2954 dbSNP
rs1212208319 2957 dbSNP
rs892919338 2966 dbSNP
rs1257511892 2968 dbSNP
rs534990191 2971 dbSNP
rs1020577100 2972 dbSNP
rs768896755 2972 dbSNP
rs1484985184 2983 dbSNP
rs1282881842 2988 dbSNP
rs766798445 2993 dbSNP
rs1364492204 2996 dbSNP
rs1009986210 2999 dbSNP
rs6087620 3000 dbSNP
rs1018738999 3005 dbSNP
rs1298657784 3007 dbSNP
rs965684261 3021 dbSNP
rs1373366772 3031 dbSNP
rs1469791107 3035 dbSNP
rs1157100727 3039 dbSNP
rs1405509414 3044 dbSNP
rs1407888594 3045 dbSNP
rs139891548 3046 dbSNP
rs1028965887 3050 dbSNP
rs1219271773 3051 dbSNP
rs1433795867 3052 dbSNP
rs1375082377 3065 dbSNP
rs954329017 3068 dbSNP
rs1174158760 3071 dbSNP
rs967230082 3075 dbSNP
rs1402553946 3077 dbSNP
rs1436430953 3080 dbSNP
rs1408765078 3082 dbSNP
rs1177181983 3087 dbSNP
rs1471886877 3087 dbSNP
rs568332682 3087 dbSNP
rs1313269435 3092 dbSNP
rs984658798 3095 dbSNP
rs1412877910 3096 dbSNP
rs1485517916 3096 dbSNP
rs987130568 3100 dbSNP
rs13902 3102 dbSNP
rs369941329 3106 dbSNP
rs1282915416 3110 dbSNP
rs974688580 3117 dbSNP
rs1237850880 3118 dbSNP
rs972781478 3120 dbSNP
rs1350498639 3127 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 58476.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacgcgccgGGCCCGAGUCc 5'
                   ::|||||||| 
Target 5' ---------UUGGGCUCAGa 3'
 		1 - 11
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A PAR-CLIP data was present in SRX1760641. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000374810.3 | 3UTR | UUGGGCUCAGACACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-1199-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130735 GATAD2B GATA zinc finger domain containing 2B 2 4
MIRT134908 CCND2 cyclin D2 2 2
MIRT273033 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT276644 KPNA3 karyopherin subunit alpha 3 2 6
MIRT446532 OAS2 2'-5'-oligoadenylate synthetase 2 2 2
MIRT456270 TDRKH tudor and KH domain containing 2 12
MIRT494455 BTG2 BTG anti-proliferation factor 2 2 2
MIRT494966 USP46 ubiquitin specific peptidase 46 2 2
MIRT496690 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT496698 RGS11 regulator of G protein signaling 11 2 2
MIRT504377 IRF4 interferon regulatory factor 4 2 6
MIRT510981 PFN2 profilin 2 2 6
MIRT512549 MFN2 mitofusin 2 2 6
MIRT513640 TP53INP2 tumor protein p53 inducible nuclear protein 2 2 2
MIRT514017 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 4
MIRT514075 MTRNR2L6 MT-RNR2-like 6 2 2
MIRT515302 C15orf38-AP3S2 C15orf38-AP3S2 readthrough 2 4
MIRT517286 AP3S2 adaptor related protein complex 3 sigma 2 subunit 2 4
MIRT519076 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT520780 TCF23 transcription factor 23 2 2
MIRT522487 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT528857 PKP1 plakophilin 1 2 2
MIRT529080 PATE2 prostate and testis expressed 2 2 2
MIRT531210 PLA2G4D phospholipase A2 group IVD 2 2
MIRT533989 TAB3 TGF-beta activated kinase 1 and MAP3K7 binding protein 3 2 2
MIRT537025 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT537499 FAM168B family with sequence similarity 168 member B 2 2
MIRT553127 UBE2Z ubiquitin conjugating enzyme E2 Z 2 2
MIRT555592 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT556371 LUZP1 leucine zipper protein 1 2 2
MIRT569746 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT570150 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT571244 FADS6 fatty acid desaturase 6 2 2
MIRT573066 TRIB1 tribbles pseudokinase 1 2 2
MIRT575534 Map4 microtubule-associated protein 4 2 2
MIRT575778 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT616559 ZNF512B zinc finger protein 512B 2 2
MIRT630079 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT631480 KLHL21 kelch like family member 21 2 2
MIRT632174 CCL22 C-C motif chemokine ligand 22 2 2
MIRT638398 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT641193 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT642563 TEX9 testis expressed 9 2 2
MIRT642938 KRTAP5-9 keratin associated protein 5-9 2 2
MIRT649704 ZNF175 zinc finger protein 175 2 2
MIRT652114 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT652274 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT655216 PFKM phosphofructokinase, muscle 2 2
MIRT682779 ZNF852 zinc finger protein 852 2 2
MIRT683002 MUC20 mucin 20, cell surface associated 2 2
MIRT684321 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT689436 CYB561 cytochrome b561 2 2
MIRT693848 ZNF107 zinc finger protein 107 2 2
MIRT696716 TAX1BP3 Tax1 binding protein 3 2 2
MIRT698598 TEX261 testis expressed 261 2 2
MIRT699974 RREB1 ras responsive element binding protein 1 2 2
MIRT703311 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT706797 RAI1 retinoic acid induced 1 2 2
MIRT709005 CD109 CD109 molecule 2 2
MIRT709182 TBC1D10B TBC1 domain family member 10B 2 2
MIRT709836 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT711628 CORO1C coronin 1C 2 2
MIRT712635 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713695 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT713753 SLC9A8 solute carrier family 9 member A8 2 2
MIRT714909 CHMP3 charged multivesicular body protein 3 2 2
MIRT716372 CBLL1 Cbl proto-oncogene like 1 2 2
MIRT718304 XPOT exportin for tRNA 2 2
MIRT718714 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT718741 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT719442 NPTX2 neuronal pentraxin 2 2 2
MIRT720897 OTUD4 OTU deubiquitinase 4 2 2
MIRT722450 RXFP4 relaxin/insulin like family peptide receptor 4 2 2
MIRT723883 VKORC1 vitamin K epoxide reductase complex subunit 1 2 2
MIRT724587 SYNJ2BP synaptojanin 2 binding protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1199 (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1199-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1199-5p Tamoxifen+Fulvestrant resistant cell line (LCC9)

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