pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NIPAL3   
Synonyms DJ462O23.2, NPAL3
Description NIPA like domain containing 3
Transcript NM_020448   
Expression
Putative miRNA Targets on NIPAL3
3'UTR of NIPAL3
(miRNA target sites are highlighted)
>NIPAL3|NM_020448|3'UTR
   1 GACTCGCCTCCCTCTATTTATAACTGTCCCCTCCAGGCTGACAGTGGTTCAACCCTGAATCCTAAAACTTGCCTTTCAAG
  81 TCTCATTTTGTTTCTAACTGAGAACTCTATGGATGATGATCTCAAAAAGCCTTTGTCTCTGGGAAAGGATGCGTTATCTT
 161 GGTCTTGGAAATTTCAAATGATGAGGGTTGGGGGATGGAAGCATTATTCCAGGTGGACGGGATAGAATCCAGCCTCTGCC
 241 TGGATTAGCCCAGGGGGATTTGGAAAGCCTTTCTACCATCCTTGAGGATGGTAACTGAGCTTCCTCTGACAGTGACCAAA
 321 GGATGCTGTATCCTTCAGAGCTAAGGCAAGACAGAGAGTCTGCTGTTAATTCTCAAATCCAGCGAAAGGCTGGACATCTC
 401 TAAATCTCGTCTTCCTCCACCTCATGTGCATGCCTGATCTCACCCTGACACTCCTGATGCCGCATCTGTGATAGCACTCG
 481 TGTTGCCTTCACATGGCAGGCTGGGCCAACCCTGGGTGGAAGGTTCTGACATTTGTGTTTTCAGAAATGTACATCTGCCT
 561 TCCAGTCATCTGTGCCCTTCTAGGGAAGATGTGCTTGATATGTTCAAATTGGATCTACTCTGAAAACGAAACTTGGTTTT
 641 GGTCCTGTGAGGACTACTTGTTTGTCCACCTCCTCCACCAAAGGAATTAGGAAGTTAAGAGAAGGGGAAGAATATGGAGG
 721 ATAGGAGAGGGTGATGATGCTTTAGCCCATTAAGGAAGAAAAGTTCCCCTTACTCTTACAAAAGGTGATTGCACCACTTA
 801 AAAAAGGATAGGTAGAAAATCTGGCCATTTTATGTGTTATTTTTTTCCTGCATACCAGTGCCCCCTGGAAAGATGGGGAT
 881 GCTCATTTCAGAGACAGCCTCTTCACCTGTCCTCCGTCTCTCCATTACAGAGCCACAAGCCAAGCTTGAGTTACTGGTTA
 961 ATTTCCTTGAAGTCAATAGAGACTCTCTGGGTCCTCATCCCCATGCATATATGTCTGGGAGAAGCAAGCATTCTCCAAAA
1041 CAGGGCTGTTGCTTTCTTCCTGGCCGCATATGTGACTGTCTTCCCCTAGACTGATGGTATACTTTTGAGAGGGGCGGATA
1121 AAGGTTTGCAAACTTTAATGGGCATAAGGATCCCCTAGAAGCATATGTAAAATGCAGATTCCTGCACCCCAACTGCAGAC
1201 ACTGTTAAGTGGGACTGGAGTGGGGCCCACGGGTCTGCATTCTTAACTGGTACCACCAGTGATTCTGATGCGATGCTTCA
1281 ATCCCGAGATTTCACATCTGGAAAGCCTAAGAATTTACAAAGATGTTCTGCTAAAACCCCCAGGGCCCCATGCAGTCTTG
1361 CTAGAAAATTTCCTCCCTAGGGTTCCTTTGGAAGGTTAAATACTCCCCATAGGATCTGTGGCATTTCTCCATCCAATGAA
1441 TACTACTTAGAGCTACACTCACCACTTCCCTAGACAGCCTTTAATAGGCATGATAACAGTGTTAATAGACCAGTGTGATA
1521 GATCACTTATCTTTATGGATTGTGCTTAATACTGATTTAGTATCTTGACTCCAAAAACTGACATCTGTTGTCTGTGATAA
1601 CCACTTCTGTATTGCGTCTTAACCACTTCTGTATTGTGTGGTCTTAACTGCCTAAGGCGGCAATGGGCAGTGGGCCCCTT
1681 TCCCTTAGGATGGGTATCAATTCAACAATATTTATAAGGCATTTACTGTGTGCTAAGCATTTGGAAGACCCAGGCTACAA
1761 AATAAGACATAGTTCCTGCCCTCCAGGCCAGCAGAGGGAGGCACAAATACCCAGGAATCTCTGATGGGTGTGAAGTGCGG
1841 TCGTGGGCCACAGAAAATGACCGTCATGGAGACCCTGCTAAAGGTCGGACCCTGAGCCCAAAGGGGTATTCAGAAGTGGA
1921 GATGATTTTGGCCCCACTCATAGATGGGTGGCAAATCTAAGATTTGTATAAAGCATATAAAATAGGGTGATCACCCCCGA
2001 GGCAGAGGGGCCAGCATTTGCAAAGGCACAGAGCTAAGAGGAGCTGGGCAAAGAAAGGAAAGCCAGGGAAGGTGGTGGGA
2081 GATGAGTCTCAAAGCTAAGTAGTGGAAGCTGGGCACAGTGGCTCATGCCTGCAATCCCAGCACTTTGGGAGGCCAAGGCT
2161 GGAGGATCACTTGAGCCCAGGAGTTTTATATCAGCCTGGGCAACATAGCAAGACCTCATCTCTGCTAAAAATTAAAAATA
2241 AATAAATTAGCTGGGTGTGGTGGTGCATGCCTGTGATCCTAGCTACTCAGGAGGCTGAGGTGGGAGGATCGCTAGAGCCC
2321 AGAGAGCCAAGGCTACAGTGAGCCATGATCATGCTACTGCACTCCAGCCTGGGTGACAATGAGACCATGGCTCAAAAAAA
2401 AAAAAAAAAAAAAGATAAGCAGTGGAGGCCGAATCATGGAGGGTCTTGAATACCTGGCTAAGGAGTTTAAAGTGTATCCA
2481 AGAGGACGTGGGAGCCACTGATGGTTCATGAGGAAGAGAAGGGCAGGACCAGCACTGATTGAAAAGGAGGGCTTGTTCAG
2561 TGTGGAGGAAGAATCAGAAGGGGGAATAAGTTACCTTCTCCGAGCCTGCAAGAACAAAAAACAAAAAGCAGAAATTAAAA
2641 TCAGGTTTCACTGCTATTTATATATTTCTCCTTTCCCAAATGATTTTTCTAAAGCTGGGAGTGGAGGCAGGAGGGAGAAA
2721 CAGAAGGTGAGCAGGGAGGCTATTTAGATGTGTCAAACCCGGGTGATCATTAATAATTTGGGCATATATATGCTCCCAAA
2801 CTTACTCTGCCCCCTTCCTTCCCTTTTTTTTTTTTTTTTTTGGTATGGGCCTTTTAGGCTTGGGCCAGCCAGCTTTCTTG
2881 AGATGAGTGAATAAAAGCGTATTGTAATTTCATGTCTGCTTCAGATCATGGGGACAGTGCCACCCAGGAACTGCTGCTGA
2961 GGCCTGGGAAGCTCCCTTGCCTTCGGGTTTGGAGCAGTGGCATCATCCCACCAACCTGAGCCATGAAAGGGCTGAGCAGA
3041 AAGTTAAATGGTAGTTTCCTGACTGGAAGCCACACGTAGGTCACTTGAGTAGTCAGGAAGCACAGTGGGTGTGGAGCCAT
3121 CATCTGTCTTGGGCTGGTTCCTCCCAATCTTTGTCCAGTGGTATAAATGGACTGTCTGCTGATGGCCATACGCAGCACTG
3201 GCTGTTAAGATGGGGAAGGGGTACATCAGGATTCCACTCATAGCCCTGGTTCGTTATTGTTACTCATGGCTCTGACGTCC
3281 CCAAGCCCTCTTGAATGTTGCAAGCAATGTTAAATATCACACCTCGGTCTCCTTTTGAGCAGCCCAGGTACCTAAAGCAA
3361 GGTCACCAAACTTGGGTTTAAACTTCAGTTGCCATCACAGCAGGGTTCAGGTTATGCAGTTTTTGCAGTGTGGAGTTGAA
3441 CGCTGGGTAAAGAAGGGAGAGCTGACTCTCCATTGCTTTTCTAGTGGAAACCAGCCAGTTTGACGGCACGGTGCGGATAC
3521 AGGACTCCATCAGGCTAGTGTTGGGGAACCAGCCCGGCAGCCTTCCATGTGAATTCCAAAGCTGTTTCAACACTGGCTGA
3601 TAGGCAGACAAAAGGTTACTTGTGTGTTTCTCTGAGAAGCGGTGTAAATGAAGTCACCTTAGAATATATTCTGTGCGGAT
3681 GCTTATATTTTGTTAACTTCACGACTTATGGCATGTCTTATTTAAAAAAAAAAAAGTACTAGGTGCAAATAACATTATGA
3761 AGTGGTATTTAATTAAAAATCCATGCAGTGACAGCTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCG--UUCUGG--GGCAGAGAUUu 5'
            |||  |||:|:   | ||||||| 
Target 5' ccAGCGAAAGGCTGGACATCTCTAAa 3'
379 - 404 156.00 -14.30
2
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            |||||||||:| |||||:  
Target 5' atAGCAAGACCTCATCTCTGct 3'
2205 - 2226 152.00 -24.40
3
miRNA  3' ucucGUUC----UGGGGCAGAGAUUu 5'
              ||||    |::::||:||||| 
Target 5' ctttCAAGTCTCATTTTGTTTCTAAc 3'
73 - 98 144.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30471465 30 COSMIC
COSN30507632 31 COSMIC
COSN30494673 93 COSMIC
COSN30167483 122 COSMIC
COSN1441538 618 COSMIC
COSN31960195 650 COSMIC
COSN31960196 812 COSMIC
COSN16396787 833 COSMIC
COSN5740132 1040 COSMIC
COSN23183033 1273 COSMIC
COSN4749778 1360 COSMIC
COSN30279219 1619 COSMIC
COSN22084863 2298 COSMIC
COSN20094551 2414 COSMIC
COSN1441552 2604 COSMIC
COSN1101715 2709 COSMIC
COSN20094553 2841 COSMIC
COSN21744046 3076 COSMIC
COSN31960197 3426 COSMIC
COSN26322029 3619 COSMIC
COSN217023 3641 COSMIC
COSN1101717 3736 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769999230 2 dbSNP
rs759053798 6 dbSNP
rs773042716 7 dbSNP
rs1299111492 10 dbSNP
rs760337810 11 dbSNP
rs185468559 14 dbSNP
rs368289521 19 dbSNP
rs762339294 20 dbSNP
rs1046660842 21 dbSNP
rs765746261 27 dbSNP
rs200497617 28 dbSNP
rs758963795 29 dbSNP
rs1158601293 34 dbSNP
rs779954764 37 dbSNP
rs751639464 39 dbSNP
rs375070709 51 dbSNP
rs749341031 54 dbSNP
rs769074566 55 dbSNP
rs374873194 63 dbSNP
rs1449158792 76 dbSNP
rs909128122 83 dbSNP
rs1357029660 92 dbSNP
rs1226183833 94 dbSNP
rs1266940786 94 dbSNP
rs1329169904 101 dbSNP
rs1399635141 111 dbSNP
rs774856427 112 dbSNP
rs1206846106 114 dbSNP
rs941989722 118 dbSNP
rs1441735753 121 dbSNP
rs975133361 125 dbSNP
rs1259337299 130 dbSNP
rs1471773708 131 dbSNP
rs762284050 140 dbSNP
rs1181652253 146 dbSNP
rs548216536 152 dbSNP
rs568354212 153 dbSNP
rs933365361 154 dbSNP
rs1402172072 163 dbSNP
rs1335018869 181 dbSNP
rs899173440 187 dbSNP
rs760271067 188 dbSNP
rs75181393 190 dbSNP
rs1290153545 192 dbSNP
rs1048793099 194 dbSNP
rs34756034 197 dbSNP
rs889673403 201 dbSNP
rs1043264627 203 dbSNP
rs555151629 216 dbSNP
rs1261444425 219 dbSNP
rs904769972 220 dbSNP
rs534116175 230 dbSNP
rs1344291526 251 dbSNP
rs1200962844 252 dbSNP
rs1282208973 256 dbSNP
rs553989132 257 dbSNP
rs1019500870 267 dbSNP
rs1250258570 268 dbSNP
rs41268765 270 dbSNP
rs1421073859 274 dbSNP
rs1184878149 276 dbSNP
rs1013264339 282 dbSNP
rs965191539 294 dbSNP
rs1024681513 317 dbSNP
rs1176011456 320 dbSNP
rs573392638 343 dbSNP
rs983238431 344 dbSNP
rs534457493 345 dbSNP
rs766015341 353 dbSNP
rs1030723041 357 dbSNP
rs552911951 366 dbSNP
rs957944144 377 dbSNP
rs989124807 385 dbSNP
rs577599977 390 dbSNP
rs58488495 393 dbSNP
rs35913793 395 dbSNP
rs766110372 398 dbSNP
rs1375465842 399 dbSNP
rs974702328 401 dbSNP
rs1467254865 406 dbSNP
rs114858366 409 dbSNP
rs115682716 410 dbSNP
rs556343948 411 dbSNP
rs1309731755 418 dbSNP
rs376770704 424 dbSNP
rs920651396 430 dbSNP
rs930648347 440 dbSNP
rs543989734 444 dbSNP
rs1299248574 450 dbSNP
rs12096213 455 dbSNP
rs1234226011 464 dbSNP
rs565858951 469 dbSNP
rs1337807186 479 dbSNP
rs1006838119 481 dbSNP
rs1040972365 497 dbSNP
rs1275856684 503 dbSNP
rs1490319936 505 dbSNP
rs547612659 519 dbSNP
rs1296114702 524 dbSNP
rs901021086 532 dbSNP
rs559815606 555 dbSNP
rs1265042462 564 dbSNP
rs1335686291 567 dbSNP
rs1215683581 603 dbSNP
rs1246245855 605 dbSNP
rs145306390 628 dbSNP
rs1199049305 629 dbSNP
rs1372178746 636 dbSNP
rs1189696531 647 dbSNP
rs41268767 653 dbSNP
rs1422386639 655 dbSNP
rs1013210607 668 dbSNP
rs1367575116 669 dbSNP
rs1461619350 673 dbSNP
rs1166546573 684 dbSNP
rs1385803607 691 dbSNP
rs1456651524 694 dbSNP
rs1289324617 705 dbSNP
rs1046079761 721 dbSNP
rs1170227145 728 dbSNP
rs1394112544 729 dbSNP
rs1370985666 730 dbSNP
rs569575710 732 dbSNP
rs1311716833 740 dbSNP
rs1356399591 755 dbSNP
rs1235360723 758 dbSNP
rs534760963 762 dbSNP
rs1328505840 767 dbSNP
rs1217164978 780 dbSNP
rs957844143 795 dbSNP
rs1291777428 798 dbSNP
rs1011067746 805 dbSNP
rs1475370173 809 dbSNP
rs118158534 813 dbSNP
rs1409155813 817 dbSNP
rs758317755 818 dbSNP
rs1471954591 819 dbSNP
rs1159153858 824 dbSNP
rs1346943422 825 dbSNP
rs969012645 832 dbSNP
rs1302111457 833 dbSNP
rs1295058372 835 dbSNP
rs1363258892 840 dbSNP
rs963263309 840 dbSNP
rs541852702 849 dbSNP
rs878997408 851 dbSNP
rs149192530 857 dbSNP
rs1035210165 858 dbSNP
rs1275790882 872 dbSNP
rs758950321 876 dbSNP
rs1349987764 880 dbSNP
rs1028919312 909 dbSNP
rs777609370 910 dbSNP
rs954645949 912 dbSNP
rs189554797 917 dbSNP
rs534699711 919 dbSNP
rs552757845 924 dbSNP
rs577688296 925 dbSNP
rs181386494 929 dbSNP
rs1486829198 934 dbSNP
rs868012544 939 dbSNP
rs972224994 949 dbSNP
rs978882044 959 dbSNP
rs1409519446 962 dbSNP
rs143379995 968 dbSNP
rs930784484 977 dbSNP
rs1190187911 978 dbSNP
rs937525848 978 dbSNP
rs576796483 982 dbSNP
rs1370247605 991 dbSNP
rs1443797393 1002 dbSNP
rs910587007 1005 dbSNP
rs944662838 1011 dbSNP
rs140736710 1012 dbSNP
rs1273460640 1016 dbSNP
rs901055073 1018 dbSNP
rs1274351014 1031 dbSNP
rs1288329871 1033 dbSNP
rs1306623227 1035 dbSNP
rs1204692539 1036 dbSNP
rs1234126965 1042 dbSNP
rs1487189600 1043 dbSNP
rs1192967544 1044 dbSNP
rs1455518373 1051 dbSNP
rs41268769 1054 dbSNP
rs751911845 1060 dbSNP
rs1410751477 1062 dbSNP
rs186583769 1066 dbSNP
rs1348236210 1067 dbSNP
rs1437530547 1069 dbSNP
rs1373903266 1073 dbSNP
rs1046035968 1075 dbSNP
rs1297321303 1096 dbSNP
rs1298623528 1100 dbSNP
rs1214817529 1107 dbSNP
rs886121456 1116 dbSNP
rs1005018210 1117 dbSNP
rs1212577320 1124 dbSNP
rs1037460357 1125 dbSNP
rs868492310 1134 dbSNP
rs111856131 1138 dbSNP
rs1186526619 1140 dbSNP
rs1469824322 1140 dbSNP
rs1226996344 1143 dbSNP
rs1052314277 1147 dbSNP
rs1475592360 1150 dbSNP
rs1322828953 1151 dbSNP
rs1239010663 1156 dbSNP
rs1266936760 1161 dbSNP
rs12117331 1164 dbSNP
rs781414037 1177 dbSNP
rs1010684728 1188 dbSNP
rs1023311930 1189 dbSNP
rs79796969 1198 dbSNP
rs1482775291 1200 dbSNP
rs780282448 1201 dbSNP
rs1179875098 1202 dbSNP
rs749333901 1210 dbSNP
rs1396699617 1221 dbSNP
rs1456124093 1222 dbSNP
rs1318190824 1229 dbSNP
rs954592193 1231 dbSNP
rs1433381378 1232 dbSNP
rs867791892 1234 dbSNP
rs1008846930 1250 dbSNP
rs1020267431 1253 dbSNP
rs1376591707 1260 dbSNP
rs1232296221 1261 dbSNP
rs967422193 1265 dbSNP
rs962357682 1266 dbSNP
rs1206769934 1268 dbSNP
rs972723584 1272 dbSNP
rs979214122 1273 dbSNP
rs1033103981 1274 dbSNP
rs1027846466 1278 dbSNP
rs952300686 1284 dbSNP
rs541351285 1286 dbSNP
rs1409775123 1287 dbSNP
rs986229902 1294 dbSNP
rs1471627359 1295 dbSNP
rs1458890687 1304 dbSNP
rs1386376592 1305 dbSNP
rs991667975 1309 dbSNP
rs1332683965 1318 dbSNP
rs910618160 1321 dbSNP
rs1375154544 1322 dbSNP
rs917436953 1325 dbSNP
rs944693837 1332 dbSNP
rs191940516 1338 dbSNP
rs1405656237 1339 dbSNP
rs983015676 1346 dbSNP
rs924602930 1351 dbSNP
rs935284740 1374 dbSNP
rs907510716 1377 dbSNP
rs940377844 1396 dbSNP
rs1276260763 1397 dbSNP
rs1380435503 1401 dbSNP
rs1485193738 1404 dbSNP
rs1037808362 1406 dbSNP
rs898913961 1408 dbSNP
rs1482185692 1409 dbSNP
rs1181257962 1414 dbSNP
rs1364454534 1415 dbSNP
rs1287020939 1422 dbSNP
rs1326378585 1423 dbSNP
rs551476134 1437 dbSNP
rs931747960 1448 dbSNP
rs1050238769 1449 dbSNP
rs1315149205 1470 dbSNP
rs879095160 1471 dbSNP
rs890306528 1486 dbSNP
rs1052766699 1488 dbSNP
rs778847312 1507 dbSNP
rs1327604409 1511 dbSNP
rs748733693 1522 dbSNP
rs1044793566 1523 dbSNP
rs551567899 1531 dbSNP
rs1335774509 1545 dbSNP
rs904918402 1549 dbSNP
rs1444319777 1551 dbSNP
rs1238970271 1561 dbSNP
rs1003239864 1578 dbSNP
rs1483461174 1580 dbSNP
rs1347017310 1581 dbSNP
rs368182953 1584 dbSNP
rs756250020 1608 dbSNP
rs1234816253 1609 dbSNP
rs1008794524 1610 dbSNP
rs1020214844 1613 dbSNP
rs1034687150 1614 dbSNP
rs1195377240 1615 dbSNP
rs1439589126 1616 dbSNP
rs574152545 1616 dbSNP
rs772679372 1617 dbSNP
rs1252971087 1634 dbSNP
rs563389766 1642 dbSNP
rs530693656 1645 dbSNP
rs993796672 1653 dbSNP
rs548899515 1659 dbSNP
rs952266852 1660 dbSNP
rs1166907697 1661 dbSNP
rs567236743 1664 dbSNP
rs1411192852 1668 dbSNP
rs1323282192 1676 dbSNP
rs528244260 1678 dbSNP
rs1159975250 1694 dbSNP
rs138546684 1695 dbSNP
rs6687649 1709 dbSNP
rs1227001639 1711 dbSNP
rs538765120 1716 dbSNP
rs867261530 1717 dbSNP
rs183153239 1719 dbSNP
rs568907965 1720 dbSNP
rs1469305219 1729 dbSNP
rs564462058 1735 dbSNP
rs988093729 1748 dbSNP
rs1246597992 1749 dbSNP
rs1428247989 1755 dbSNP
rs971542355 1765 dbSNP
rs1306677684 1769 dbSNP
rs915102139 1771 dbSNP
rs1162256669 1773 dbSNP
rs1393012637 1773 dbSNP
rs1461907192 1781 dbSNP
rs78489047 1784 dbSNP
rs982963292 1795 dbSNP
rs1381482294 1799 dbSNP
rs1296005117 1801 dbSNP
rs1044910907 1803 dbSNP
rs1288421160 1808 dbSNP
rs908792604 1809 dbSNP
rs941647468 1811 dbSNP
rs926457279 1812 dbSNP
rs1216131391 1828 dbSNP
rs939127577 1838 dbSNP
rs758978637 1839 dbSNP
rs574280365 1840 dbSNP
rs1206149886 1842 dbSNP
rs897504876 1843 dbSNP
rs1280301456 1855 dbSNP
rs1429934796 1862 dbSNP
rs993549383 1863 dbSNP
rs374174329 1864 dbSNP
rs1475228110 1865 dbSNP
rs1204206296 1879 dbSNP
rs1166433014 1884 dbSNP
rs1362043704 1885 dbSNP
rs1050190864 1887 dbSNP
rs1289232548 1888 dbSNP
rs1386786807 1890 dbSNP
rs1413188598 1890 dbSNP
rs887993994 1892 dbSNP
rs1007809777 1900 dbSNP
rs1483977852 1900 dbSNP
rs74470122 1901 dbSNP
rs1304941281 1902 dbSNP
rs1246191593 1903 dbSNP
rs553572273 1905 dbSNP
rs966184868 1909 dbSNP
rs1262880551 1922 dbSNP
rs1484868081 1932 dbSNP
rs545232082 1934 dbSNP
rs997612011 1942 dbSNP
rs1032149414 1947 dbSNP
rs1208323717 1967 dbSNP
rs1477091194 1968 dbSNP
rs578032507 1969 dbSNP
rs1183158921 1972 dbSNP
rs1405074920 1975 dbSNP
rs1426182487 1976 dbSNP
rs1418442260 1982 dbSNP
rs141180412 1986 dbSNP
rs1365351516 1987 dbSNP
rs1432672448 1991 dbSNP
rs563325849 1993 dbSNP
rs1172759840 1994 dbSNP
rs914571607 1995 dbSNP
rs1416849641 1996 dbSNP
rs1296528657 1998 dbSNP
rs1372628190 1999 dbSNP
rs762918255 2000 dbSNP
rs1430936285 2009 dbSNP
rs1392502608 2012 dbSNP
rs980637737 2031 dbSNP
rs113007477 2038 dbSNP
rs1234086346 2050 dbSNP
rs1281481166 2054 dbSNP
rs72882466 2063 dbSNP
rs1211722452 2065 dbSNP
rs1433712732 2065 dbSNP
rs1230699167 2068 dbSNP
rs1480000978 2069 dbSNP
rs1177242064 2070 dbSNP
rs1276201388 2070 dbSNP
rs939160359 2071 dbSNP
rs1056237367 2083 dbSNP
rs1452483556 2088 dbSNP
rs918964458 2092 dbSNP
rs894487852 2093 dbSNP
rs1227268415 2099 dbSNP
rs1416396475 2117 dbSNP
rs1295124717 2126 dbSNP
rs1012918258 2127 dbSNP
rs928997692 2130 dbSNP
rs35568064 2140 dbSNP
rs1462600284 2144 dbSNP
rs1299949555 2145 dbSNP
rs1049241021 2150 dbSNP
rs887431722 2159 dbSNP
rs186182452 2165 dbSNP
rs191030310 2166 dbSNP
rs1289069984 2168 dbSNP
rs1449901519 2179 dbSNP
rs1039272031 2190 dbSNP
rs1204675697 2194 dbSNP
rs756980989 2197 dbSNP
rs1259421365 2199 dbSNP
rs1223900805 2207 dbSNP
rs1004336600 2214 dbSNP
rs997644910 2218 dbSNP
rs780155768 2219 dbSNP
rs560800405 2221 dbSNP
rs79456652 2237 dbSNP
rs879657181 2252 dbSNP
rs1172997767 2254 dbSNP
rs1298265091 2257 dbSNP
rs1022069616 2258 dbSNP
rs1402680910 2259 dbSNP
rs1282273163 2260 dbSNP
rs1313095741 2265 dbSNP
rs953026661 2266 dbSNP
rs985843312 2270 dbSNP
rs1327113332 2273 dbSNP
rs1407621641 2274 dbSNP
rs1259416992 2275 dbSNP
rs1350584627 2276 dbSNP
rs1324919102 2292 dbSNP
rs1429121576 2301 dbSNP
rs1269962715 2311 dbSNP
rs911634535 2312 dbSNP
rs1279556953 2314 dbSNP
rs1218059759 2315 dbSNP
rs1331968714 2317 dbSNP
rs1394669127 2325 dbSNP
rs970018441 2326 dbSNP
rs195728 2327 dbSNP
rs1241306337 2331 dbSNP
rs924467526 2333 dbSNP
rs1033535704 2338 dbSNP
rs1196049216 2339 dbSNP
rs187869438 2346 dbSNP
rs1283479988 2352 dbSNP
rs1198909556 2356 dbSNP
rs1416659591 2363 dbSNP
rs1054786437 2368 dbSNP
rs776403472 2376 dbSNP
rs967084595 2378 dbSNP
rs894443552 2379 dbSNP
rs369629048 2380 dbSNP
rs1346098858 2382 dbSNP
rs10664394 2394 dbSNP
rs1187108816 2394 dbSNP
rs1221941666 2394 dbSNP
rs1442754246 2394 dbSNP
rs763927612 2394 dbSNP
rs1354147603 2395 dbSNP
rs1230022290 2396 dbSNP
rs1290660907 2397 dbSNP
rs1464509491 2407 dbSNP
rs1012863995 2412 dbSNP
rs1247942015 2415 dbSNP
rs992369268 2417 dbSNP
rs1218474308 2421 dbSNP
rs977719488 2424 dbSNP
rs1255731019 2425 dbSNP
rs531475849 2431 dbSNP
rs1188828991 2437 dbSNP
rs1239214006 2440 dbSNP
rs1469064310 2449 dbSNP
rs1158448472 2450 dbSNP
rs907279875 2455 dbSNP
rs1004282951 2458 dbSNP
rs1172141837 2461 dbSNP
rs1187245408 2473 dbSNP
rs1367138398 2475 dbSNP
rs1373304833 2477 dbSNP
rs532095127 2488 dbSNP
rs929069444 2489 dbSNP
rs1341683193 2497 dbSNP
rs1439968545 2508 dbSNP
rs984543010 2509 dbSNP
rs116302557 2510 dbSNP
rs1417864738 2512 dbSNP
rs1351282122 2513 dbSNP
rs942990823 2524 dbSNP
rs1242123042 2531 dbSNP
rs12058036 2536 dbSNP
rs1347433195 2542 dbSNP
rs1211795781 2545 dbSNP
rs1280853248 2550 dbSNP
rs138018614 2562 dbSNP
rs1390418055 2563 dbSNP
rs1181135901 2566 dbSNP
rs1234021473 2580 dbSNP
rs1442075360 2595 dbSNP
rs748220532 2599 dbSNP
rs772732740 2602 dbSNP
rs954310722 2603 dbSNP
rs191011320 2606 dbSNP
rs1327584308 2608 dbSNP
rs759231532 2613 dbSNP
rs1448815580 2614 dbSNP
rs1300998594 2616 dbSNP
rs1369908579 2616 dbSNP
rs1234281054 2617 dbSNP
rs1276872028 2628 dbSNP
rs1337673732 2640 dbSNP
rs1053736502 2644 dbSNP
rs1273802349 2646 dbSNP
rs567855116 2655 dbSNP
rs1459486582 2657 dbSNP
rs1212306869 2662 dbSNP
rs1252790844 2663 dbSNP
rs891945396 2669 dbSNP
rs1455008961 2676 dbSNP
rs1201426821 2677 dbSNP
rs1012103455 2680 dbSNP
rs1021683715 2682 dbSNP
rs1379065105 2684 dbSNP
rs1474218028 2702 dbSNP
rs535378515 2703 dbSNP
rs183315406 2708 dbSNP
rs195729 2709 dbSNP
rs924432007 2711 dbSNP
rs1393602092 2714 dbSNP
rs1387185510 2716 dbSNP
rs1303121247 2718 dbSNP
rs1033566752 2721 dbSNP
rs188253587 2722 dbSNP
rs960647388 2727 dbSNP
rs992069535 2733 dbSNP
rs1026593040 2746 dbSNP
rs77666839 2748 dbSNP
rs775090628 2751 dbSNP
rs1278935005 2760 dbSNP
rs1330060267 2761 dbSNP
rs149514025 2762 dbSNP
rs984963264 2764 dbSNP
rs557007345 2765 dbSNP
rs908922072 2767 dbSNP
rs1045696556 2768 dbSNP
rs1260002041 2769 dbSNP
rs907225984 2770 dbSNP
rs1191963334 2771 dbSNP
rs575336594 2780 dbSNP
rs1169874499 2786 dbSNP
rs1444494464 2791 dbSNP
rs1188782474 2794 dbSNP
rs940085349 2796 dbSNP
rs943023613 2799 dbSNP
rs965294468 2805 dbSNP
rs974439164 2806 dbSNP
rs922928294 2810 dbSNP
rs1295078660 2813 dbSNP
rs933592672 2814 dbSNP
rs1342582852 2824 dbSNP
rs1381890021 2824 dbSNP
rs148414271 2824 dbSNP
rs55926605 2824 dbSNP
rs568049280 2824 dbSNP
rs749269170 2824 dbSNP
rs755555547 2824 dbSNP
rs1053361937 2825 dbSNP
rs1247547380 2826 dbSNP
rs1156272303 2827 dbSNP
rs1413589288 2841 dbSNP
rs1217766355 2842 dbSNP
rs1263517176 2842 dbSNP
rs1410995254 2843 dbSNP
rs200053322 2844 dbSNP
rs1399725043 2846 dbSNP
rs1415985577 2848 dbSNP
rs1424344500 2849 dbSNP
rs1166773984 2857 dbSNP
rs1361885103 2862 dbSNP
rs1452845995 2864 dbSNP
rs1159006516 2869 dbSNP
rs891972321 2879 dbSNP
rs947557232 2899 dbSNP
rs1313371528 2900 dbSNP
rs1043128218 2903 dbSNP
rs898629509 2912 dbSNP
rs1312363190 2920 dbSNP
rs1379922139 2936 dbSNP
rs1398337437 2938 dbSNP
rs1305543595 2949 dbSNP
rs996069759 2951 dbSNP
rs1290276615 2952 dbSNP
rs1241402813 2958 dbSNP
rs1028528317 2961 dbSNP
rs1336500170 2963 dbSNP
rs905925595 2967 dbSNP
rs1208211975 2970 dbSNP
rs147201287 2985 dbSNP
rs1347514845 2986 dbSNP
rs1018590959 2987 dbSNP
rs1248399327 2988 dbSNP
rs965706697 2997 dbSNP
rs1201417553 3000 dbSNP
rs867497443 3006 dbSNP
rs561371378 3016 dbSNP
rs74060365 3022 dbSNP
rs192067317 3052 dbSNP
rs1026204834 3056 dbSNP
rs776843846 3065 dbSNP
rs759297688 3076 dbSNP
rs1006018659 3079 dbSNP
rs1197662903 3088 dbSNP
rs769299086 3089 dbSNP
rs1375606126 3090 dbSNP
rs565051290 3102 dbSNP
rs140587873 3106 dbSNP
rs751880097 3107 dbSNP
rs1448083625 3108 dbSNP
rs1311939278 3120 dbSNP
rs1369176854 3124 dbSNP
rs550801266 3127 dbSNP
rs562530929 3148 dbSNP
rs954374562 3155 dbSNP
rs1369783747 3161 dbSNP
rs928599475 3162 dbSNP
rs529857134 3164 dbSNP
rs1427737852 3166 dbSNP
rs989486432 3174 dbSNP
rs1199138352 3178 dbSNP
rs1309779722 3182 dbSNP
rs1452384970 3187 dbSNP
rs913447503 3192 dbSNP
rs775029514 3193 dbSNP
rs1426210307 3194 dbSNP
rs142941729 3195 dbSNP
rs1168433084 3197 dbSNP
rs370252076 3205 dbSNP
rs200398874 3206 dbSNP
rs1037067872 3214 dbSNP
rs1299413438 3215 dbSNP
rs1466624506 3218 dbSNP
rs757696024 3225 dbSNP
rs1392883836 3226 dbSNP
rs370629274 3227 dbSNP
rs1333017191 3228 dbSNP
rs1440697552 3240 dbSNP
rs937453123 3244 dbSNP
rs1235358298 3249 dbSNP
rs566491740 3253 dbSNP
rs1367868445 3254 dbSNP
rs774001977 3254 dbSNP
rs1297300650 3263 dbSNP
rs1220535248 3264 dbSNP
rs1292847787 3267 dbSNP
rs1316700707 3268 dbSNP
rs931436669 3277 dbSNP
rs1340491333 3278 dbSNP
rs1207851620 3291 dbSNP
rs1057112780 3292 dbSNP
rs1480652401 3293 dbSNP
rs1208697143 3301 dbSNP
rs1264716594 3311 dbSNP
rs1050335351 3317 dbSNP
rs1489597120 3326 dbSNP
rs184665915 3327 dbSNP
rs767765810 3332 dbSNP
rs1423049675 3333 dbSNP
rs1389248882 3338 dbSNP
rs1478214168 3347 dbSNP
rs1172887395 3358 dbSNP
rs994141559 3362 dbSNP
rs1447448147 3370 dbSNP
rs15441 3371 dbSNP
rs886391642 3385 dbSNP
rs1019888163 3389 dbSNP
rs1351965084 3394 dbSNP
rs902804219 3395 dbSNP
rs1286791103 3397 dbSNP
rs1339393329 3398 dbSNP
rs1400094374 3405 dbSNP
rs1279468053 3406 dbSNP
rs1332671511 3419 dbSNP
rs35633363 3420 dbSNP
rs998926434 3421 dbSNP
rs1290387962 3422 dbSNP
rs1006139391 3430 dbSNP
rs571866945 3442 dbSNP
rs1291834374 3443 dbSNP
rs1262765082 3448 dbSNP
rs1016127856 3451 dbSNP
rs1196026596 3463 dbSNP
rs1255479894 3467 dbSNP
rs1472788488 3471 dbSNP
rs1031360800 3474 dbSNP
rs1416541450 3475 dbSNP
rs1399345848 3476 dbSNP
rs1158359873 3477 dbSNP
rs147455027 3484 dbSNP
rs1419924664 3485 dbSNP
rs1299561489 3487 dbSNP
rs1320161409 3496 dbSNP
rs774216768 3501 dbSNP
rs1030063006 3505 dbSNP
rs187852328 3506 dbSNP
rs969867972 3509 dbSNP
rs1221868792 3510 dbSNP
rs988463108 3511 dbSNP
rs1165065344 3515 dbSNP
rs912883228 3516 dbSNP
rs981289916 3521 dbSNP
rs1278339892 3535 dbSNP
rs1441949517 3538 dbSNP
rs969039315 3542 dbSNP
rs34433310 3543 dbSNP
rs1239738254 3544 dbSNP
rs939991312 3546 dbSNP
rs549596136 3555 dbSNP
rs148510569 3557 dbSNP
rs931358400 3568 dbSNP
rs1469423331 3588 dbSNP
rs1160050313 3597 dbSNP
rs1213863573 3602 dbSNP
rs1399557151 3610 dbSNP
rs1247054451 3611 dbSNP
rs1413430244 3615 dbSNP
rs927477757 3628 dbSNP
rs761644109 3629 dbSNP
rs868507432 3631 dbSNP
rs1190233891 3634 dbSNP
rs1308328523 3641 dbSNP
rs536393152 3642 dbSNP
rs1041274874 3650 dbSNP
rs1301554974 3657 dbSNP
rs1344512455 3660 dbSNP
rs1057146708 3672 dbSNP
rs1201113246 3677 dbSNP
rs554642828 3678 dbSNP
rs917304104 3682 dbSNP
rs1198545557 3686 dbSNP
rs750155441 3686 dbSNP
rs192683002 3703 dbSNP
rs1053171063 3704 dbSNP
rs1375582850 3710 dbSNP
rs888426336 3712 dbSNP
rs941954809 3713 dbSNP
rs184124103 3720 dbSNP
rs1011703580 3724 dbSNP
rs11308969 3724 dbSNP
rs1172720240 3724 dbSNP
rs879327298 3724 dbSNP
rs1037593931 3725 dbSNP
rs1400883785 3733 dbSNP
rs1448738851 3734 dbSNP
rs1321263920 3749 dbSNP
rs1330809296 3750 dbSNP
rs969814035 3755 dbSNP
rs1276738580 3756 dbSNP
rs900356941 3760 dbSNP
rs547683038 3768 dbSNP
rs79989922 3784 dbSNP
rs890247073 3785 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucguucUGGGGCAGAGauuu 5'
                  |:|:|||||:    
Target 5' --------AUCUCGUCUUccuc 3'
1 - 14
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 57185.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucguucUGGGGCAGAGauuu 5'
                  |:|:|||||:    
Target 5' --------AUCUCGUCUUccuc 3'
1 - 14
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177623. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_1 PAR-CLIP data was present in ERX177627. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_5 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000003912.3 | 3UTR | AUCUCGUCUUCCUCCACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000003912.3 | 3UTR | AUCUCGUCUUCCUCCACCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer -0.476 2.9e-3 -0.457 4.3e-3 32 Click to see details
GSE28544 Breast cancer -0.531 3.8e-3 -0.468 1.1e-2 24 Click to see details
GSE28260 Renal cortex and medulla 0.682 5.1e-3 0.670 6.1e-3 13 Click to see details
GSE42095 Differentiated embryonic stem cells -0.403 2.8e-2 -0.418 2.4e-2 23 Click to see details
GSE38226 Liver fibrosis -0.42 2.9e-2 -0.279 1.1e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.179 2.0e-1 -0.147 2.4e-1 25 Click to see details
GSE26953 Aortic valvular endothelial cells -0.041 4.2e-1 -0.072 3.7e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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