miRTarBase - #MIRT514017


—
pre-miRNA Information
pre-miRNA hsa-mir-1199   
Genomic Coordinates chr19: 14073361 - 14073479
Description Homo sapiens miR-1199 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1199-5p
Sequence 21| CCUGAGCCCGGGCCGCGCAG |40
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1438702968 5 dbSNP
rs757334792 6 dbSNP
rs1159152107 9 dbSNP
rs1365081692 10 dbSNP
rs1451155091 12 dbSNP
rs934105122 17 dbSNP
Putative Targets

Gene Information
Gene Symbol CAMSAP1   
Synonyms -
Description calmodulin regulated spectrin associated protein 1
Transcript NM_015447   
Expression
Putative miRNA Targets on CAMSAP1
3'UTR of CAMSAP1
(miRNA target sites are highlighted)		 
>CAMSAP1|NM_015447|3'UTR
   1 CCCCGGTGCAGCTGGCGTCCAAAGGGTGACCCAGACTCGTAAATGATGCCCTTGTGGCTGGCATCCAGAGGGTGCCACGG
  81 GGTCCTTATTTATTGTTTTCATCTATTTGGGTACGAAGTGTGCAAAGTCACAGACCTTTTGCAAAGAGGTTTCTAGACAG
 161 CAGAAGAAAACCCCTCTCTCAGCGCTCATCTCACGCAGAGGATGCCAGGCAGGGTGAGGATGGGGGAGTAGATGCCGCTT
 241 TTGCAGTGGCTCGCACTGCTGTGGCCACTGCTGACCACTGAGGCTCCCAGCGGAGGGTGTTCACAGCCAGGTCCCGGGCC
 321 ACGGAGCTCCCTTACTTGAAGTTCTCCTTCAGCATAGATTAGACGTGATCCACTTTGCTTTCTTGCTTCTCACCTCGCCC
 401 CCTTGCACATTGCCTGACACCCTCATATTGGCCAGCTGTAATCTCGTGACTATGGGACTGAGGCTCAATCTTGGCTTGGG
 481 GTGTTTGAATGTCTATAGCAAAGGAATTCATAATGGGAAATCTTTTTCATTTGAGAAATTGTATGATATTTATTGGTTGT
 561 GTCTACTGCCAACATTTATATCCAATTCTAAGATTTCTGAAAAAAAATTCTTATCCCTTGCTGCTCAGAAAAAGTTTACG
 641 GAAAACACCAGTTCACTAAAAGCACCGAAATCTGCAAAGCCTGTCTTCCGCTAGAACAACGTCTACAAATGTGAAGATGA
 721 TGACTTCTGGCACGCGGTCATGAGGGTGGGGAATGGCACTAGGAGCTGATGTTTGCCTCATTTAAAGTAGGCAAGCCGAG
 801 CCAACTGCAGCCATCATTCATTAAGTTTTGGGTAGTGCTCTAATGGTTTGTTCACTTTAATAAAGACAGATTTTGGTAAA
 881 GTAGAATATTTTTCATTCTGAGCATGTTTGTCCCAAAAGGTGATGCACTTAAGCTGACAGTCCCTTCAGTGGTTTTGTTA
 961 GGTCACGGCTTGTCCTGTCTGGATTCTGCATCTGGAAGCGCTGCATGCTCTCAGAGGAGCGTGCCGTTTCCCCTGTAGAT
1041 GGATACTTTTGTTTTGTTGCCTATTTAAAAACAATTAAGTGGTTATTTGCAGTTATTTCAGAACTCCAAGTAAGTGGATG
1121 GCTTTGGGTTCTTTCTGCCTTGGTCCCAATGGTGTTGATGCTTCTGTGGAGCGCGGACATTCCCAGGAGCAGGTGCGTGC
1201 CAGCCATGGCTGCCAGACACTGCTGCAACTGACCAGCTGCCGGAAGATTCTGGAGCCACTAACATTAGTTTTGCACATAT
1281 TTTCTTGGGAGTGTTACTTGAATCTATCTCAAACTGCAGAAAAAATCAAAAGATCAATAATTGGGAGAAAAAGAGACAAA
1361 TTTAACTGTTACATAATTTTAGATAGACAAAAAACATGAGTGAGTCGTGTACATAAGGAGGGAACATGGTACAGAAGGCT
1441 AGAAGGAATTATAGGTCTTATTCCCCTTTCCTCAGTCCTTTGAAGAGAAGTACAGTCTCTTGCGATTTTGTATATATCGT
1521 GTTCGACACAGCCGCTCTCTGTCCTGTAAATAGGGAACTAAAGGCTGTATGATTTCTCAAGTGCTGAGTTACACAGTCCT
1601 GAGTGAGCTTTCTGTTACCATACTTTCACACGTGGGCTTTATTTCTCACTGTATGTTTGATATGATATTACTGTATTTAT
1681 TTTAAGAAAGCACTAAGATGTAATAAAGTGATGAACTAATTTGCTTTACATTGAATCGTATGTGTGAGGTTGCTGTGGCT
1761 CATTTCGCTGACCAGGCGACACCAACTCCTTGCTTTATAGGAGTTTCACATTGTTCTTTACCATGGCCCTATCGAAGTCA
1841 GTGGAATTGGATTCTTTTTAATGAAGAGCTAGAAAATATCTGGCATAGAGCTGGAAAATTGCATTCCCATGGGACGTCTG
1921 AATCAATTCTGGATTTTCTCCATGGAATGAGTCAGTGTGTGGAACATCCTGAAACTTGTCCTTAAGCGTGTAGTTTTCAC
2001 TGTTCGTTGCGAGTAAGCACTAATGTGGCATGGACATTCCTGATGTCCCAAGTCCCCAGGCCAGTGTTCGCCTAATGATT
2081 GACAGAAGCGTCCCTGCGTTCTTCATGCTTGGACACAGCAACCCTTTTAATTAGTCTTGAAAAGTTTCAGACACAGGATT
2161 AATTTTCGTGGTGGTGCTTTTGGGCCTTTCTGGCTTGGGTGGTGGTAAAGTCATGATTTTGCAGTTGATAACACTGACTT
2241 ATAACTCTGTTTATCAATGTCTCCTATATTCAAAGCCCCTGCAGTGGTATTTGTGTCTCGTTGCAAATTTCTTTCAGCGG
2321 AAAGCTTGCACAACTTTCGTTGTGTCTCAGAATTCTAACCTTGTTATTTAAGACAAGCTGCTCTACCCATTTAGGATATA
2401 ACTTTGTAAAGAAAGTGTAAACCAAATGATTCAATGTATGATGAAGTTTATGTGTAAATCCTTGGTAATGCTAGAATTCT
2481 GGGAGCCCAGAAGGGTTGAAAGAGAAATGAAACTTGCGTGAGTCCCATTATTTTACGCATGTATGTGCAGATACGTTCTA
2561 CCCACACGTGTGCGTGCACATGGCTGTGTGCGTGCACCAAAGATGGACTGCTTTCCATGTGTCCTTTTGACTTTCTGCAC
2641 GTGTCACTGCGGTGCAGTCTCTTAGCAGACTTCAGGCCCAAACTGTATTCTTCACTCAGGCAAAATTGAAAAGTGGAATA
2721 ATTCTAAATTACTTCTAGGTTATACTTTTACCTCCCTGAAATTGTAGTTGTCACTTGGAGGGCAAAATATTTATTGAAAT
2801 AAAATTTTCTGTTAAAAATTCAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaCGCGCCG--GGC-CCGAGUcc 5'
            |:| ||:  |:| ||||||  
Target 5' gtGTGAGGTTGCTGTGGCTCAtt 3'
 1742 - 1764 132.00 -17.50
2 
miRNA  3' gacgcgCCGGGC-CCGAGUcc 5'
                || |:| ||||||  
Target 5' actatgGGACTGAGGCTCAat 3'
 449 - 469 130.00 -17.30
3 
miRNA  3' gacgcgccgggccCGAGUCc 5'
                       |||||| 
Target 5' cttatcccttgctGCTCAGa 3'
 610 - 629 120.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26586436 2 COSMIC
COSN26434772 39 COSMIC
COSN31507481 44 COSMIC
COSN30147504 45 COSMIC
COSN31501544 56 COSMIC
COSN31538133 80 COSMIC
COSN23017352 178 COSMIC
COSN28194717 201 COSMIC
COSN17439956 206 COSMIC
COSN19059065 250 COSMIC
COSN8520259 253 COSMIC
COSN17921925 298 COSMIC
COSN6382018 315 COSMIC
COSN9702798 416 COSMIC
COSN32215141 424 COSMIC
COSN20120013 446 COSMIC
COSN31588251 599 COSMIC
COSN29202394 758 COSMIC
COSN2312866 888 COSMIC
COSN6382017 933 COSMIC
COSN6382016 966 COSMIC
COSN31963124 1021 COSMIC
COSN30176982 1135 COSMIC
COSN7559379 1202 COSMIC
COSN29690154 1221 COSMIC
COSN19464097 1261 COSMIC
COSN31513443 1276 COSMIC
COSN23152914 1464 COSMIC
COSN2312865 1762 COSMIC
COSN31523133 1764 COSMIC
COSN16690785 1929 COSMIC
COSN15155780 2005 COSMIC
COSN16188751 2337 COSMIC
COSN25288549 2429 COSMIC
COSN8332018 2517 COSMIC
COSN7559378 2537 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1175857293 1 dbSNP
rs757630710 2 dbSNP
rs369711971 3 dbSNP
rs374443066 4 dbSNP
rs539202672 5 dbSNP
rs1269510812 6 dbSNP
rs764704881 8 dbSNP
rs754523990 9 dbSNP
rs368983345 10 dbSNP
rs149360226 11 dbSNP
rs766003903 16 dbSNP
rs199531330 17 dbSNP
rs1303614501 20 dbSNP
rs1469507118 25 dbSNP
rs1403934194 27 dbSNP
rs1161476104 31 dbSNP
rs1458164912 32 dbSNP
rs372468564 38 dbSNP
rs190405675 39 dbSNP
rs377308361 49 dbSNP
rs998500516 60 dbSNP
rs948935813 70 dbSNP
rs968372791 75 dbSNP
rs139688665 78 dbSNP
rs374480824 79 dbSNP
rs1162613968 80 dbSNP
rs940138262 83 dbSNP
rs1458655533 84 dbSNP
rs1450439216 87 dbSNP
rs997090984 92 dbSNP
rs185746692 105 dbSNP
rs908607401 109 dbSNP
rs987259524 111 dbSNP
rs150654027 114 dbSNP
rs562749047 115 dbSNP
rs1293243786 118 dbSNP
rs755180729 125 dbSNP
rs1330204085 127 dbSNP
rs544538455 129 dbSNP
rs1008718726 130 dbSNP
rs1230675766 135 dbSNP
rs887170726 144 dbSNP
rs763479863 158 dbSNP
rs1485377582 164 dbSNP
rs1200692062 170 dbSNP
rs1257600019 173 dbSNP
rs923058458 181 dbSNP
rs1047609300 183 dbSNP
rs532299493 184 dbSNP
rs776003147 185 dbSNP
rs370038565 186 dbSNP
rs1363018715 187 dbSNP
rs1484733196 192 dbSNP
rs948655847 193 dbSNP
rs138421069 194 dbSNP
rs754128620 195 dbSNP
rs938525193 202 dbSNP
rs955669207 209 dbSNP
rs573254302 213 dbSNP
rs1286772083 219 dbSNP
rs977575496 220 dbSNP
rs1316722702 233 dbSNP
rs968348597 235 dbSNP
rs554684817 236 dbSNP
rs542598586 237 dbSNP
rs1003004753 240 dbSNP
rs964293875 241 dbSNP
rs1483958094 244 dbSNP
rs1179940080 245 dbSNP
rs371188666 248 dbSNP
rs575265293 249 dbSNP
rs1023552775 252 dbSNP
rs1013155005 253 dbSNP
rs1432927870 255 dbSNP
rs1173165437 260 dbSNP
rs1371249213 263 dbSNP
rs1412168189 265 dbSNP
rs1306755178 267 dbSNP
rs1008372634 277 dbSNP
rs766452990 286 dbSNP
rs117695618 289 dbSNP
rs182178833 291 dbSNP
rs1343705130 292 dbSNP
rs1202886109 294 dbSNP
rs995624076 297 dbSNP
rs190467641 307 dbSNP
rs751472117 315 dbSNP
rs112145639 316 dbSNP
rs1452737335 321 dbSNP
rs1425937429 322 dbSNP
rs1414716889 323 dbSNP
rs1431750686 326 dbSNP
rs923161305 327 dbSNP
rs535260997 329 dbSNP
rs1354530081 331 dbSNP
rs948605838 346 dbSNP
rs1181527606 347 dbSNP
rs1458733673 350 dbSNP
rs1295588940 357 dbSNP
rs1369262282 357 dbSNP
rs974558573 360 dbSNP
rs566555036 364 dbSNP
rs747206261 365 dbSNP
rs1057424666 370 dbSNP
rs914509645 373 dbSNP
rs778700862 376 dbSNP
rs1322325541 387 dbSNP
rs924446463 389 dbSNP
rs1263395597 393 dbSNP
rs113455852 396 dbSNP
rs947164175 397 dbSNP
rs914227890 399 dbSNP
rs1248934410 401 dbSNP
rs1031717921 402 dbSNP
rs1482726652 409 dbSNP
rs1184929570 411 dbSNP
rs981255370 413 dbSNP
rs975023549 419 dbSNP
rs1023118525 424 dbSNP
rs753779279 425 dbSNP
rs1013021495 428 dbSNP
rs898646188 445 dbSNP
rs1017147952 446 dbSNP
rs1390453023 446 dbSNP
rs963699356 448 dbSNP
rs912775203 450 dbSNP
rs139031964 452 dbSNP
rs1410957224 455 dbSNP
rs1310538379 457 dbSNP
rs568885206 466 dbSNP
rs775445792 467 dbSNP
rs951571772 468 dbSNP
rs1483640039 474 dbSNP
rs899894577 479 dbSNP
rs1416395656 487 dbSNP
rs771948473 495 dbSNP
rs1164318521 497 dbSNP
rs1460109276 512 dbSNP
rs1298181392 517 dbSNP
rs1039784857 519 dbSNP
rs1026270955 522 dbSNP
rs995571878 523 dbSNP
rs1160075484 531 dbSNP
rs1449647854 535 dbSNP
rs1046300 536 dbSNP
rs11553780 537 dbSNP
rs1472314409 538 dbSNP
rs943198582 541 dbSNP
rs1248248278 543 dbSNP
rs962814871 548 dbSNP
rs914376290 559 dbSNP
rs550810904 560 dbSNP
rs1222241170 561 dbSNP
rs934572496 561 dbSNP
rs1312822243 562 dbSNP
rs1212402594 565 dbSNP
rs1256015938 568 dbSNP
rs1485592601 569 dbSNP
rs532308649 572 dbSNP
rs1183553414 574 dbSNP
rs1254355639 592 dbSNP
rs1468953070 593 dbSNP
rs185966500 607 dbSNP
rs1425503581 608 dbSNP
rs1488658781 608 dbSNP
rs1010412123 610 dbSNP
rs1374339017 611 dbSNP
rs924335547 613 dbSNP
rs145156823 614 dbSNP
rs1330841543 617 dbSNP
rs1057012994 620 dbSNP
rs971195796 631 dbSNP
rs1268380994 638 dbSNP
rs1003242837 639 dbSNP
rs749939737 640 dbSNP
rs1278212431 643 dbSNP
rs1347272533 647 dbSNP
rs1206445350 648 dbSNP
rs1305427938 654 dbSNP
rs903000006 655 dbSNP
rs1389082919 658 dbSNP
rs577251400 660 dbSNP
rs991163865 666 dbSNP
rs528324773 667 dbSNP
rs775408029 680 dbSNP
rs149044952 683 dbSNP
rs914299887 687 dbSNP
rs376620568 689 dbSNP
rs942347955 690 dbSNP
rs1456740770 694 dbSNP
rs3824357 699 dbSNP
rs987067128 700 dbSNP
rs180879754 701 dbSNP
rs1433745677 705 dbSNP
rs745641313 713 dbSNP
rs1229304974 724 dbSNP
rs188838616 733 dbSNP
rs578178778 735 dbSNP
rs962886855 736 dbSNP
rs1054284948 739 dbSNP
rs1248210152 741 dbSNP
rs184105872 742 dbSNP
rs924505334 755 dbSNP
rs1207752728 758 dbSNP
rs1045627893 760 dbSNP
rs1484590753 780 dbSNP
rs1257298493 784 dbSNP
rs1012343415 787 dbSNP
rs891851479 792 dbSNP
rs1190014031 796 dbSNP
rs371734905 797 dbSNP
rs1035456341 798 dbSNP
rs949767361 802 dbSNP
rs751204927 804 dbSNP
rs1415641897 820 dbSNP
rs1324119942 823 dbSNP
rs1459714564 823 dbSNP
rs567879737 824 dbSNP
rs991237290 830 dbSNP
rs1303318491 834 dbSNP
rs1320306303 839 dbSNP
rs962428110 840 dbSNP
rs910081588 845 dbSNP
rs764473347 846 dbSNP
rs554176151 855 dbSNP
rs1337384268 864 dbSNP
rs903072398 866 dbSNP
rs372009655 867 dbSNP
rs1272141103 874 dbSNP
rs1465014542 880 dbSNP
rs1206538734 883 dbSNP
rs1041638200 885 dbSNP
rs150325311 886 dbSNP
rs536362240 889 dbSNP
rs1304717219 894 dbSNP
rs1466624390 895 dbSNP
rs1039421308 898 dbSNP
rs1259590135 900 dbSNP
rs1474101413 904 dbSNP
rs1374715265 913 dbSNP
rs1412457983 915 dbSNP
rs775876466 925 dbSNP
rs1171713288 927 dbSNP
rs1451058070 934 dbSNP
rs951553558 937 dbSNP
rs1390604183 941 dbSNP
rs1187519735 947 dbSNP
rs912210113 948 dbSNP
rs797002112 952 dbSNP
rs1335438888 960 dbSNP
rs1051231303 965 dbSNP
rs568823668 966 dbSNP
rs368306878 967 dbSNP
rs1258628370 969 dbSNP
rs200370141 972 dbSNP
rs974321653 974 dbSNP
rs769775708 979 dbSNP
rs532175185 980 dbSNP
rs1003260799 983 dbSNP
rs1252227084 988 dbSNP
rs1420698999 989 dbSNP
rs1184228861 991 dbSNP
rs1344716497 992 dbSNP
rs1453135667 994 dbSNP
rs760089647 999 dbSNP
rs140158223 1000 dbSNP
rs990903786 1003 dbSNP
rs1312836013 1005 dbSNP
rs1054320472 1010 dbSNP
rs961106902 1012 dbSNP
rs1315130025 1014 dbSNP
rs1396633223 1020 dbSNP
rs1035126047 1021 dbSNP
rs1281784317 1024 dbSNP
rs978476583 1025 dbSNP
rs902988584 1026 dbSNP
rs966684925 1031 dbSNP
rs1481487672 1040 dbSNP
rs1193930314 1042 dbSNP
rs546903710 1050 dbSNP
rs1167179267 1051 dbSNP
rs1418662036 1052 dbSNP
rs1194526764 1054 dbSNP
rs1452702314 1055 dbSNP
rs1173536780 1059 dbSNP
rs1046063167 1060 dbSNP
rs192276301 1076 dbSNP
rs894179400 1077 dbSNP
rs892971651 1079 dbSNP
rs1396258740 1084 dbSNP
rs1187839499 1085 dbSNP
rs1386953853 1091 dbSNP
rs1305233665 1092 dbSNP
rs1055375086 1093 dbSNP
rs909652003 1106 dbSNP
rs982521699 1121 dbSNP
rs1422687442 1124 dbSNP
rs1488701367 1126 dbSNP
rs930142835 1126 dbSNP
rs367994882 1134 dbSNP
rs1255179622 1135 dbSNP
rs1018086100 1142 dbSNP
rs977449479 1145 dbSNP
rs1420333691 1149 dbSNP
rs1006627906 1163 dbSNP
rs759229622 1172 dbSNP
rs776474384 1173 dbSNP
rs1050882326 1174 dbSNP
rs775125652 1175 dbSNP
rs770428163 1176 dbSNP
rs929590192 1179 dbSNP
rs896830337 1182 dbSNP
rs1288878554 1187 dbSNP
rs189161383 1190 dbSNP
rs941631628 1193 dbSNP
rs916738748 1196 dbSNP
rs56055200 1197 dbSNP
rs530905632 1206 dbSNP
rs928002879 1212 dbSNP
rs563479184 1213 dbSNP
rs1269291565 1217 dbSNP
rs545057375 1217 dbSNP
rs1242736645 1219 dbSNP
rs1022293024 1221 dbSNP
rs1185268847 1224 dbSNP
rs1261714170 1225 dbSNP
rs1167472653 1226 dbSNP
rs1460637848 1226 dbSNP
rs772385058 1228 dbSNP
rs1160824749 1235 dbSNP
rs1460546367 1239 dbSNP
rs746535911 1240 dbSNP
rs957312037 1241 dbSNP
rs72771922 1242 dbSNP
rs1428097977 1250 dbSNP
rs1288201879 1253 dbSNP
rs1356085096 1259 dbSNP
rs1416549252 1262 dbSNP
rs929740636 1264 dbSNP
rs1333931833 1265 dbSNP
rs1007112569 1272 dbSNP
rs1175857591 1277 dbSNP
rs890963802 1287 dbSNP
rs115943853 1288 dbSNP
rs541725007 1291 dbSNP
rs780053854 1300 dbSNP
rs574244407 1302 dbSNP
rs11553781 1312 dbSNP
rs942956380 1322 dbSNP
rs185152787 1328 dbSNP
rs1038072441 1329 dbSNP
rs1177401977 1334 dbSNP
rs1409780746 1335 dbSNP
rs1269979380 1340 dbSNP
rs1375544735 1343 dbSNP
rs1436462530 1344 dbSNP
rs369751836 1353 dbSNP
rs989702839 1353 dbSNP
rs958033218 1357 dbSNP
rs1271513350 1359 dbSNP
rs575402273 1361 dbSNP
rs1280356502 1363 dbSNP
rs941020055 1365 dbSNP
rs756059376 1368 dbSNP
rs772470612 1370 dbSNP
rs1030997152 1376 dbSNP
rs745807467 1379 dbSNP
rs1213602597 1380 dbSNP
rs141287658 1388 dbSNP
rs866531446 1388 dbSNP
rs1332581672 1390 dbSNP
rs557054241 1390 dbSNP
rs1024582953 1394 dbSNP
rs1234965821 1395 dbSNP
rs1468232466 1397 dbSNP
rs1324027956 1401 dbSNP
rs1176299612 1406 dbSNP
rs1439697639 1407 dbSNP
rs1055385658 1409 dbSNP
rs1391739401 1418 dbSNP
rs1322166563 1420 dbSNP
rs1014058327 1426 dbSNP
rs1457276847 1427 dbSNP
rs3201247 1430 dbSNP
rs866197328 1437 dbSNP
rs1330575633 1438 dbSNP
rs1406663377 1441 dbSNP
rs894282478 1445 dbSNP
rs1034235825 1447 dbSNP
rs1158477593 1451 dbSNP
rs1469107930 1452 dbSNP
rs1379728415 1453 dbSNP
rs1194584906 1457 dbSNP
rs1005384599 1465 dbSNP
rs1301876637 1466 dbSNP
rs1251319013 1470 dbSNP
rs1344844252 1474 dbSNP
rs1215681233 1485 dbSNP
rs1275505954 1494 dbSNP
rs1210854619 1495 dbSNP
rs56381246 1503 dbSNP
rs1253299970 1504 dbSNP
rs779247727 1505 dbSNP
rs1046721146 1510 dbSNP
rs1393966774 1512 dbSNP
rs1283709281 1515 dbSNP
rs559653861 1518 dbSNP
rs1417094074 1519 dbSNP
rs1409210251 1520 dbSNP
rs1042864028 1524 dbSNP
rs1330920804 1524 dbSNP
rs945488883 1525 dbSNP
rs1275369825 1529 dbSNP
rs751134561 1533 dbSNP
rs1368560685 1534 dbSNP
rs900905421 1535 dbSNP
rs1272478260 1536 dbSNP
rs1337838834 1539 dbSNP
rs1218480225 1546 dbSNP
rs1274200852 1546 dbSNP
rs1336415555 1547 dbSNP
rs989410110 1549 dbSNP
rs964698122 1552 dbSNP
rs911088707 1553 dbSNP
rs1435427637 1561 dbSNP
rs755377144 1567 dbSNP
rs571244473 1570 dbSNP
rs546546450 1576 dbSNP
rs955376431 1578 dbSNP
rs1029535798 1582 dbSNP
rs534615370 1583 dbSNP
rs370116535 1596 dbSNP
rs1174841299 1601 dbSNP
rs567078197 1609 dbSNP
rs1401416258 1617 dbSNP
rs1320842860 1618 dbSNP
rs62584792 1622 dbSNP
rs1399943884 1631 dbSNP
rs7838 1632 dbSNP
rs971113121 1635 dbSNP
rs1005184062 1636 dbSNP
rs1264546251 1645 dbSNP
rs193109960 1651 dbSNP
rs1206449720 1653 dbSNP
rs1281534518 1653 dbSNP
rs1241588087 1663 dbSNP
rs1188598547 1667 dbSNP
rs1213640892 1672 dbSNP
rs1259305648 1675 dbSNP
rs1474131062 1677 dbSNP
rs1185672880 1683 dbSNP
rs1368180429 1685 dbSNP
rs1454505627 1689 dbSNP
rs1160313361 1690 dbSNP
rs1382907494 1691 dbSNP
rs1419582327 1691 dbSNP
rs1444209390 1691 dbSNP
rs1055779672 1692 dbSNP
rs1314060939 1703 dbSNP
rs1377634534 1709 dbSNP
rs1003840298 1718 dbSNP
rs765596133 1730 dbSNP
rs551872291 1737 dbSNP
rs759966944 1738 dbSNP
rs1005461370 1739 dbSNP
rs777033806 1740 dbSNP
rs756152574 1741 dbSNP
rs1211467480 1752 dbSNP
rs915300419 1753 dbSNP
rs1282458323 1761 dbSNP
rs533139091 1766 dbSNP
rs559176101 1767 dbSNP
rs1419841620 1770 dbSNP
rs1184283236 1773 dbSNP
rs910587404 1777 dbSNP
rs539579601 1778 dbSNP
rs1439220961 1782 dbSNP
rs1174805242 1783 dbSNP
rs1397509870 1784 dbSNP
rs1433410163 1791 dbSNP
rs993867078 1792 dbSNP
rs955339567 1797 dbSNP
rs1392732446 1798 dbSNP
rs1268059947 1800 dbSNP
rs559706200 1810 dbSNP
rs1234467804 1813 dbSNP
rs1375502814 1813 dbSNP
rs1304994401 1823 dbSNP
rs1340583343 1825 dbSNP
rs1040824207 1833 dbSNP
rs1313984492 1837 dbSNP
rs1434693346 1838 dbSNP
rs1006606939 1845 dbSNP
rs1197749704 1847 dbSNP
rs1481513999 1847 dbSNP
rs1374009348 1850 dbSNP
rs541698662 1857 dbSNP
rs1457370029 1867 dbSNP
rs574384211 1869 dbSNP
rs922414361 1871 dbSNP
rs760648941 1878 dbSNP
rs1410880760 1879 dbSNP
rs762974817 1880 dbSNP
rs972538035 1883 dbSNP
rs1185035504 1884 dbSNP
rs773380869 1890 dbSNP
rs961202501 1894 dbSNP
rs1463896848 1897 dbSNP
rs866315709 1904 dbSNP
rs1258381685 1908 dbSNP
rs1327270236 1909 dbSNP
rs889991732 1915 dbSNP
rs140491561 1916 dbSNP
rs1484689812 1920 dbSNP
rs1309030008 1921 dbSNP
rs544016147 1931 dbSNP
rs867538183 1934 dbSNP
rs748396211 1941 dbSNP
rs936941601 1942 dbSNP
rs924232620 1951 dbSNP
rs1043004786 1954 dbSNP
rs1254927283 1956 dbSNP
rs1005342785 1957 dbSNP
rs949420797 1957 dbSNP
rs1263129257 1958 dbSNP
rs959297988 1967 dbSNP
rs1430812920 1970 dbSNP
rs1191879074 1980 dbSNP
rs990902084 1984 dbSNP
rs147652617 1988 dbSNP
rs1166691920 1992 dbSNP
rs959441791 1998 dbSNP
rs556755227 1999 dbSNP
rs12004494 2005 dbSNP
rs1398088398 2006 dbSNP
rs1277282354 2009 dbSNP
rs1355889652 2010 dbSNP
rs577527683 2011 dbSNP
rs1319988844 2024 dbSNP
rs1025576384 2035 dbSNP
rs1487107614 2036 dbSNP
rs1009650317 2037 dbSNP
rs1239034885 2038 dbSNP
rs893982328 2039 dbSNP
rs1354037442 2040 dbSNP
rs1262878881 2042 dbSNP
rs1475764889 2045 dbSNP
rs1189604820 2047 dbSNP
rs1053791332 2048 dbSNP
rs1422888694 2051 dbSNP
rs943495286 2056 dbSNP
rs1159127498 2064 dbSNP
rs540344493 2069 dbSNP
rs368472737 2070 dbSNP
rs1375813690 2073 dbSNP
rs1168578692 2075 dbSNP
rs199639883 2081 dbSNP
rs1377176037 2086 dbSNP
rs1227981504 2088 dbSNP
rs933336460 2089 dbSNP
rs1019289459 2090 dbSNP
rs142690839 2097 dbSNP
rs1215055701 2098 dbSNP
rs889519531 2104 dbSNP
rs1032068973 2105 dbSNP
rs1213388353 2108 dbSNP
rs1001051676 2115 dbSNP
rs902646537 2117 dbSNP
rs1042645935 2119 dbSNP
rs949665670 2122 dbSNP
rs148718844 2123 dbSNP
rs939827659 2124 dbSNP
rs909319870 2125 dbSNP
rs909757748 2127 dbSNP
rs1358393314 2128 dbSNP
rs1447531920 2133 dbSNP
rs1231010549 2141 dbSNP
rs985253792 2143 dbSNP
rs759429831 2144 dbSNP
rs983855987 2148 dbSNP
rs1349162854 2152 dbSNP
rs1221457708 2155 dbSNP
rs1276901621 2156 dbSNP
rs931171760 2159 dbSNP
rs1204753358 2160 dbSNP
rs1234311603 2167 dbSNP
rs536819944 2168 dbSNP
rs972716474 2178 dbSNP
rs965659380 2184 dbSNP
rs959183102 2190 dbSNP
rs749697939 2192 dbSNP
rs568355423 2199 dbSNP
rs1424176752 2202 dbSNP
rs1272152556 2205 dbSNP
rs746501004 2211 dbSNP
rs1230859077 2212 dbSNP
rs777395677 2218 dbSNP
rs953662208 2220 dbSNP
rs1032101867 2221 dbSNP
rs1000984115 2223 dbSNP
rs1035964240 2224 dbSNP
rs902718842 2224 dbSNP
rs1033860952 2227 dbSNP
rs1273635241 2231 dbSNP
rs981775874 2233 dbSNP
rs1215594586 2241 dbSNP
rs970801045 2242 dbSNP
rs1224878172 2249 dbSNP
rs1260403656 2249 dbSNP
rs1021127243 2252 dbSNP
rs188880581 2255 dbSNP
rs1009805664 2256 dbSNP
rs757984688 2258 dbSNP
rs1469456642 2272 dbSNP
rs1196643129 2283 dbSNP
rs1032496307 2286 dbSNP
rs1246121099 2291 dbSNP
rs1008043088 2298 dbSNP
rs184547078 2299 dbSNP
rs1296881423 2300 dbSNP
rs1443572415 2304 dbSNP
rs1395422587 2312 dbSNP
rs533469942 2314 dbSNP
rs1055281309 2318 dbSNP
rs1052285277 2319 dbSNP
rs933302495 2333 dbSNP
rs897863294 2335 dbSNP
rs1330964227 2337 dbSNP
rs765543101 2338 dbSNP
rs566087844 2339 dbSNP
rs972958330 2340 dbSNP
rs1418489351 2342 dbSNP
rs547803968 2346 dbSNP
rs1405514541 2349 dbSNP
rs1357840544 2358 dbSNP
rs943827041 2367 dbSNP
rs1288539590 2368 dbSNP
rs1447463707 2369 dbSNP
rs755356570 2372 dbSNP
rs1218747617 2378 dbSNP
rs1260730871 2379 dbSNP
rs1477403362 2382 dbSNP
rs909705307 2384 dbSNP
rs983928040 2395 dbSNP
rs912494595 2399 dbSNP
rs937858473 2401 dbSNP
rs953696002 2403 dbSNP
rs926351920 2417 dbSNP
rs1032420785 2418 dbSNP
rs1251933552 2422 dbSNP
rs1211469868 2426 dbSNP
rs766763459 2431 dbSNP
rs1359007565 2432 dbSNP
rs1399852093 2444 dbSNP
rs565197199 2446 dbSNP
rs776310083 2451 dbSNP
rs1217132561 2463 dbSNP
rs970408731 2468 dbSNP
rs577642619 2470 dbSNP
rs7021888 2476 dbSNP
rs1305513421 2479 dbSNP
rs988333816 2485 dbSNP
rs1350817843 2493 dbSNP
rs1372222529 2493 dbSNP
rs958310035 2494 dbSNP
rs1032568040 2498 dbSNP
rs1487837426 2515 dbSNP
rs1002373959 2517 dbSNP
rs1007688481 2518 dbSNP
rs1289586684 2524 dbSNP
rs887821051 2525 dbSNP
rs1453148067 2526 dbSNP
rs889291393 2529 dbSNP
rs1378931025 2534 dbSNP
rs773107949 2536 dbSNP
rs767711549 2537 dbSNP
rs1030408888 2539 dbSNP
rs1393902466 2540 dbSNP
rs1454518324 2540 dbSNP
rs1335822273 2541 dbSNP
rs762088320 2551 dbSNP
rs1306460932 2554 dbSNP
rs774738963 2554 dbSNP
rs1275268216 2560 dbSNP
rs1234959633 2561 dbSNP
rs1036394384 2563 dbSNP
rs1451021852 2567 dbSNP
rs943857943 2568 dbSNP
rs1006240782 2573 dbSNP
rs1198932420 2573 dbSNP
rs1458384604 2574 dbSNP
rs1049713069 2576 dbSNP
rs1259449435 2586 dbSNP
rs932547060 2588 dbSNP
rs191210507 2591 dbSNP
rs924999528 2592 dbSNP
rs527568942 2598 dbSNP
rs755718609 2598 dbSNP
rs760177987 2599 dbSNP
rs1280138661 2616 dbSNP
rs769052345 2617 dbSNP
rs888343060 2620 dbSNP
rs564142352 2627 dbSNP
rs979490787 2636 dbSNP
rs12671 2637 dbSNP
rs1375568018 2639 dbSNP
rs937823579 2640 dbSNP
rs116830426 2641 dbSNP
rs1046142412 2645 dbSNP
rs1251683256 2647 dbSNP
rs949161187 2650 dbSNP
rs1200790141 2657 dbSNP
rs1256205249 2663 dbSNP
rs553286414 2682 dbSNP
rs149592841 2683 dbSNP
rs539951153 2684 dbSNP
rs544733718 2685 dbSNP
rs1314608915 2686 dbSNP
rs1435332770 2687 dbSNP
rs1033808841 2690 dbSNP
rs776559827 2694 dbSNP
rs1424815766 2699 dbSNP
rs1466828385 2701 dbSNP
rs1374624306 2706 dbSNP
rs913556448 2717 dbSNP
rs1398902856 2718 dbSNP
rs1171454114 2723 dbSNP
rs1458028057 2724 dbSNP
rs1463347401 2729 dbSNP
rs1388409067 2732 dbSNP
rs770756704 2734 dbSNP
rs746976666 2735 dbSNP
rs1192064403 2737 dbSNP
rs577667877 2738 dbSNP
rs1295974549 2739 dbSNP
rs1027880576 2744 dbSNP
rs993916771 2750 dbSNP
rs1426190035 2757 dbSNP
rs1317375387 2760 dbSNP
rs56025849 2761 dbSNP
rs1257720794 2762 dbSNP
rs139593088 2767 dbSNP
rs540599731 2770 dbSNP
rs957717457 2779 dbSNP
rs1209095608 2785 dbSNP
rs777194771 2792 dbSNP
rs1264317336 2804 dbSNP
rs1479039887 2819 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 157922.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacgcgccgggccCGAGUCc 5'
                       |||||| 
Target 5' cuuaucccuugcuGCUCAG- 3'
 		11 - 29
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 157922.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000389532.4 | 3UTR | AAAAAAAAUUCUUAUCCCUUGCUGCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000389532.4 | 3UTR | AAAAAAAAUUCUUAUCCCUUGCUGCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000389532.4 | 3UTR | AAUUCUUAUCCCUUGCUGCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-1199-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130735 GATAD2B GATA zinc finger domain containing 2B 2 4
MIRT134908 CCND2 cyclin D2 2 2
MIRT273033 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT276644 KPNA3 karyopherin subunit alpha 3 2 6
MIRT446532 OAS2 2'-5'-oligoadenylate synthetase 2 2 2
MIRT456270 TDRKH tudor and KH domain containing 2 12
MIRT494455 BTG2 BTG anti-proliferation factor 2 2 2
MIRT494966 USP46 ubiquitin specific peptidase 46 2 2
MIRT496690 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT496698 RGS11 regulator of G protein signaling 11 2 2
MIRT504377 IRF4 interferon regulatory factor 4 2 6
MIRT510981 PFN2 profilin 2 2 6
MIRT512549 MFN2 mitofusin 2 2 6
MIRT513640 TP53INP2 tumor protein p53 inducible nuclear protein 2 2 2
MIRT514017 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 4
MIRT514075 MTRNR2L6 MT-RNR2-like 6 2 2
MIRT515302 C15orf38-AP3S2 C15orf38-AP3S2 readthrough 2 4
MIRT517286 AP3S2 adaptor related protein complex 3 sigma 2 subunit 2 4
MIRT519076 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT520780 TCF23 transcription factor 23 2 2
MIRT522487 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT528857 PKP1 plakophilin 1 2 2
MIRT529080 PATE2 prostate and testis expressed 2 2 2
MIRT531210 PLA2G4D phospholipase A2 group IVD 2 2
MIRT533989 TAB3 TGF-beta activated kinase 1 and MAP3K7 binding protein 3 2 2
MIRT537025 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT537499 FAM168B family with sequence similarity 168 member B 2 2
MIRT553127 UBE2Z ubiquitin conjugating enzyme E2 Z 2 2
MIRT555592 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT556371 LUZP1 leucine zipper protein 1 2 2
MIRT569746 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT570150 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT571244 FADS6 fatty acid desaturase 6 2 2
MIRT573066 TRIB1 tribbles pseudokinase 1 2 2
MIRT575534 Map4 microtubule-associated protein 4 2 2
MIRT575778 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT616559 ZNF512B zinc finger protein 512B 2 2
MIRT630079 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT631480 KLHL21 kelch like family member 21 2 2
MIRT632174 CCL22 C-C motif chemokine ligand 22 2 2
MIRT638398 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT641193 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT642563 TEX9 testis expressed 9 2 2
MIRT642938 KRTAP5-9 keratin associated protein 5-9 2 2
MIRT649704 ZNF175 zinc finger protein 175 2 2
MIRT652114 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT652274 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT655216 PFKM phosphofructokinase, muscle 2 2
MIRT682779 ZNF852 zinc finger protein 852 2 2
MIRT683002 MUC20 mucin 20, cell surface associated 2 2
MIRT684321 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT689436 CYB561 cytochrome b561 2 2
MIRT693848 ZNF107 zinc finger protein 107 2 2
MIRT696716 TAX1BP3 Tax1 binding protein 3 2 2
MIRT698598 TEX261 testis expressed 261 2 2
MIRT699974 RREB1 ras responsive element binding protein 1 2 2
MIRT703311 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT706797 RAI1 retinoic acid induced 1 2 2
MIRT709005 CD109 CD109 molecule 2 2
MIRT709182 TBC1D10B TBC1 domain family member 10B 2 2
MIRT709836 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT711628 CORO1C coronin 1C 2 2
MIRT712635 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713695 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT713753 SLC9A8 solute carrier family 9 member A8 2 2
MIRT714909 CHMP3 charged multivesicular body protein 3 2 2
MIRT716372 CBLL1 Cbl proto-oncogene like 1 2 2
MIRT718304 XPOT exportin for tRNA 2 2
MIRT718714 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT718741 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT719442 NPTX2 neuronal pentraxin 2 2 2
MIRT720897 OTUD4 OTU deubiquitinase 4 2 2
MIRT722450 RXFP4 relaxin/insulin like family peptide receptor 4 2 2
MIRT723883 VKORC1 vitamin K epoxide reductase complex subunit 1 2 2
MIRT724587 SYNJ2BP synaptojanin 2 binding protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1199 (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1199-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1199-5p Tamoxifen+Fulvestrant resistant cell line (LCC9)

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