pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IRAK4   
Synonyms IPD1, IRAK-4, NY-REN-64, REN64
Description interleukin 1 receptor associated kinase 4
Transcript NM_001114182   
Other Transcripts NM_001145256 , NM_001145257 , NM_001145258 , NM_016123   
Expression
Putative miRNA Targets on IRAK4
3'UTR of IRAK4
(miRNA target sites are highlighted)
>IRAK4|NM_001114182|3'UTR
   1 AACTTTATTGGAAAAGACTCTTGACTTTTTATATACACCTATCTCAACCATTTTTTTAACTGATTTTTTTCCTAAATATT
  81 CTTCTTTACCTTTAACAAGGCATAGGCTGTTGCAGGACAGTGGTTATTAAAGCATGGGTTGAACTTCCAAAATATAAAAA
 161 TAGAGCCACCATATCAACACTTAGCCCTACCCATTAGTATCACCCCCAGTTCTTACAGTAATCCCTGAGAAATCTCCTTC
 241 AAGCATCACCAAACACAGTTTGAAAATTACAGGGTTAGCAAAAAGAGCCTGGGCTGTATGTAGGGTGGAAACACTCTGAT
 321 CTGAAGCCCAGCTGACTCCACTACTAATTTGCTGTAAAGCTTTGGACATACACTTAGCTGCTGTGAGCCACTAATAACAT
 401 TGGGCTAATATCTGCTGTGCTTCTCTGACAGGTAGTCATGAAAATCAAATGATGCAAAATATATACAAGCACTTTGTAAA
 481 TTGTAAAATGATACAAAATTTAAAGTTTATAGAGCCAGTTACAAAATCCTATTAGTCATATATTTATAGATTGTGTTCAC
 561 AGCAATCATTTAACCACAAATAAAATATCCCTTGATGATACTGCCATAATGATATGTCCATTATTAGATTATGTTACATG
 641 ACAAAGTTGAAGGAATTTGGCAGATGCAGTTAAGGTTCCTAAACAACTCACTTTGAGACTGTTGAAAGGGCCTGACCTAA
 721 TCAAGTGAACCCTTGCAAGAAGAATTCTCCTTGTAAGCCTTGAAGAAGTATGTGAGAGGGCCACATTGGCTAAAACCTAA
 801 AGGTGGCCTCTAGGAGATGAGACCTACCTTCCAGTTGTCAGCAAGCAGGAAAAAAAAATTGGGACCTCAGTTGCAACCAC
 881 AAGGAACTGAATTCTGCCAAAAATCTGAGTCAGCTTAGAAGAGTACTCCAAGCTTCAGATGATAACCACAGCCTGGGCTG
 961 ACACCTGGATTTCAGCTTTGCATGATCCTCAGTATGAGAATCTATCTGTTCTGTGCTGGACTTCTAATATATAGAACTGT
1041 GAGATAATGGGTCACATTGGCTGGATGTGGTGGCTCATACCTGTAAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGAT
1121 CACCTGAGGTCAAGAGTTCAAGACCGGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGACGA
1201 GCGTGGTGGTGGACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGACTAGCTGGAACCAGGGAGGTAGAGGTT
1281 GCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCATAAATAAATAAATAAATAAA
1361 TGGGTCACATTAAGCCTTTAAGTTTGTGGTAATTTATTATTCAGTAATAGAAAACAAATACAGATACTCTCCCATGATGT
1441 TTTTCCCATGATGATTTCCCATGATATTTACAGGTTTTGCCCACATTTGAGGGGTATGTGGAAATTATACAGAGCATGTA
1521 CAGCGGGAGGCTTATAGTGTACGTACTGAAATGTGGGGTTGGAGCCCCAACACAGAGACCCCAGCAGGACACTGCCTAGT
1601 AGAGCTATGGGAAGGGTGCTGCCACCCTCCAGACTTGAGAATTGTAGAGCCACCAGCAGCTTGCACTCTGAGCTTGGAAA
1681 AGCCACAGGCACTCAACTTCAACCATGAGGGAAGCCACGCACCCTGCAAAGCCACAGGAGTGGAGCTGCCCACGGCCTCG
1761 AGGGCCCACCCCTTGCACCAGTGTGCCAGGATGTGGGACATGGAATCAAGGAATATGTTAGGGCTTTTTTTTTTTTTTTT
1841 TTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCTGCCTCCCAGG
1921 TTCACGCCATTCCCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCCAGCTAATTTTTTTTG
2001 TATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCACCCGCCTCGGCC
2081 TCCCAAAGTGCCAGTATTTAAAGTTTAATGTCTTCCCAGCTGGGTTTCAGACTTGCCAGGATCCTGTTGCCCCTTTCTTT
2161 AGCCAATTTCTCCCTTTTGGGACAAGAATGTTTTACTTATTGCCTGTACCACCAACTGTATCTTGGAAATAAATAACTTA
2241 TATTTTATTTCAGAGGCTCATAGGCGGCAGGAACTTACCTTGAGTCTCAAATGAGACTTAGGACTTTTGAGTGATGCTAG
2321 AATGAGTTAAGACTTTGGGAAGGGATGATTATATTTTGCAATGTGAGAAAGACATTAGATTTGGGGGGCTGGGGGTAGAA
2401 TGACATTGTTTAGATGTTTGTCTCCTTCAAATTTCATGTTTAAATGTAATCCCCAGTGTTGGGGGTGGAGGTGGGGCCTG
2481 ATGGGAAGTGTTTGGGTCATGGTGGATGATCCCTCATGAATGGCTTAGAGCCACTGGTGATGAGTGAGTTCTCACTCAGT
2561 TCGTGTGAGATCTGGTGGCTTAAAAGAGTCTGCTCCCCCTTTGCCTTCCATTGTGATTGTAACCTTCCTGGGGCCTTCAT
2641 CAAAGGCCAGGCAAATATTGGTGCCGTGCTAGTATGGCCTGCAGAACCGTAAGCCAAAACAAACCTTTTTTCTTTATAAA
2721 TTACCCAGCCTCAGTTATTCCTTTATAGTGATGCAAAACGGGCTAACTATATAAATTTGTAATTTTTAAGTTATAGATTG
2801 TTTTTATTAAACACTTATGAATACTGTTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              || || ||||||| 
Target 5' tcccCTGCC-TCAGCCTc 3'
1931 - 1947 149.00 -17.60
2
miRNA  3' gguaGAAGGAAGUCGGag 5'
              |||:|||:||||  
Target 5' gcccCTTTCTTTAGCCaa 3'
2149 - 2166 130.00 -16.40
3
miRNA  3' gguagaagGAAGUCGGAg 5'
                  :||||||:| 
Target 5' cacctggaTTTCAGCTTt 3'
962 - 979 130.00 -11.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
308734 79 ClinVar
308735 147 ClinVar
308736 271 ClinVar
308737 282 ClinVar
883788 320 ClinVar
883789 513 ClinVar
308738 521 ClinVar
308739 575 ClinVar
308740 609 ClinVar
308741 624 ClinVar
881455 630 ClinVar
881456 855 ClinVar
308742 990 ClinVar
308743 1029 ClinVar
308744 1116 ClinVar
308745 1162 ClinVar
308746 1163 ClinVar
881892 1188 ClinVar
881893 1200 ClinVar
308747 1273 ClinVar
881894 1290 ClinVar
308748 1307 ClinVar
308749 1326 ClinVar
308750 1436 ClinVar
881895 1516 ClinVar
883067 1589 ClinVar
883068 1595 ClinVar
308751 1669 ClinVar
883069 1754 ClinVar
308752 1761 ClinVar
308753 1778 ClinVar
308754 1795 ClinVar
883070 1877 ClinVar
308755 1888 ClinVar
308756 1896 ClinVar
883841 1926 ClinVar
308757 1975 ClinVar
308758 1992 ClinVar
883842 2015 ClinVar
308759 2072 ClinVar
308760 2077 ClinVar
308761 2084 ClinVar
308762 2189 ClinVar
308763 2199 ClinVar
308764 2346 ClinVar
880552 2375 ClinVar
308765 2434 ClinVar
308766 2472 ClinVar
308767 2564 ClinVar
308768 2667 ClinVar
880553 2667 ClinVar
308769 2705 ClinVar
881973 2726 ClinVar
308770 2762 ClinVar
308771 2818 ClinVar
881974 2827 ClinVar
COSN30101924 2 COSMIC
COSN20077729 3 COSMIC
COSN19734982 27 COSMIC
COSN30470695 31 COSMIC
COSN31610384 42 COSMIC
COSN31582193 71 COSMIC
COSN30148523 85 COSMIC
COSN30169301 99 COSMIC
COSN20416349 943 COSMIC
COSN22392919 966 COSMIC
COSN25313924 1116 COSMIC
COSN5322933 1152 COSMIC
COSN21829457 1199 COSMIC
COSN17366371 1638 COSMIC
COSN18765829 1843 COSMIC
COSN25914490 2635 COSMIC
COSN31960776 2673 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755104443 5 dbSNP
rs1349132326 7 dbSNP
rs567188868 8 dbSNP
rs1207590581 9 dbSNP
rs1253567278 12 dbSNP
rs1448388797 14 dbSNP
rs748253330 18 dbSNP
rs199727839 20 dbSNP
rs1049222594 22 dbSNP
rs1175507391 24 dbSNP
rs781021520 25 dbSNP
rs781731425 28 dbSNP
rs1170610237 32 dbSNP
rs745643347 34 dbSNP
rs1402701273 35 dbSNP
rs1319039163 38 dbSNP
rs553330681 42 dbSNP
rs769526114 44 dbSNP
rs1306183211 45 dbSNP
rs1372373984 47 dbSNP
rs1007292830 48 dbSNP
rs1232923484 48 dbSNP
rs755909125 51 dbSNP
rs924111105 52 dbSNP
rs184380424 53 dbSNP
rs1199262905 64 dbSNP
rs1275009412 65 dbSNP
rs934115892 75 dbSNP
rs1428078788 77 dbSNP
rs1345604245 79 dbSNP
rs886049388 79 dbSNP
rs1167135816 84 dbSNP
rs1462273405 89 dbSNP
rs1374768877 103 dbSNP
rs1051196240 110 dbSNP
rs577974384 113 dbSNP
rs1268986203 121 dbSNP
rs911287558 129 dbSNP
rs1435743690 139 dbSNP
rs1271802430 143 dbSNP
rs1038795401 145 dbSNP
rs1341884030 146 dbSNP
rs4251546 147 dbSNP
rs182322900 151 dbSNP
rs899116917 154 dbSNP
rs1285299021 156 dbSNP
rs1202164357 168 dbSNP
rs1408034204 172 dbSNP
rs1335434967 189 dbSNP
rs879661524 192 dbSNP
rs995161171 202 dbSNP
rs1398363272 203 dbSNP
rs1173909034 204 dbSNP
rs997172018 207 dbSNP
rs1447729978 209 dbSNP
rs1178006235 211 dbSNP
rs1468130782 216 dbSNP
rs1168797709 217 dbSNP
rs1399263185 223 dbSNP
rs1413223298 227 dbSNP
rs1021080719 229 dbSNP
rs1241696642 234 dbSNP
rs1375497930 234 dbSNP
rs1047599057 240 dbSNP
rs1265504993 240 dbSNP
rs187201106 246 dbSNP
rs1350024645 262 dbSNP
rs4251547 271 dbSNP
rs1241460155 273 dbSNP
rs4251548 282 dbSNP
rs1339657114 283 dbSNP
rs1334474982 285 dbSNP
rs1451598624 288 dbSNP
rs1406787421 292 dbSNP
rs1338600032 303 dbSNP
rs115845154 306 dbSNP
rs1204972384 308 dbSNP
rs1398510801 314 dbSNP
rs1034749271 319 dbSNP
rs769535835 320 dbSNP
rs1470970801 327 dbSNP
rs1011942091 328 dbSNP
rs879391895 342 dbSNP
rs147004395 343 dbSNP
rs770150730 344 dbSNP
rs991505795 346 dbSNP
rs915986446 350 dbSNP
rs1245568923 354 dbSNP
rs1214267286 366 dbSNP
rs1446864783 374 dbSNP
rs971926045 378 dbSNP
rs981456775 388 dbSNP
rs919256687 397 dbSNP
rs773095431 398 dbSNP
rs924163265 401 dbSNP
rs1199788239 402 dbSNP
rs929503890 409 dbSNP
rs1428565409 410 dbSNP
rs559634238 411 dbSNP
rs1318442268 421 dbSNP
rs4251549 429 dbSNP
rs1363378664 451 dbSNP
rs191617315 463 dbSNP
rs1213364437 467 dbSNP
rs1240204975 478 dbSNP
rs183559035 489 dbSNP
rs1387475376 491 dbSNP
rs1185087110 510 dbSNP
rs909351719 511 dbSNP
rs1243163221 513 dbSNP
rs1218093538 516 dbSNP
rs4251550 521 dbSNP
rs548838962 523 dbSNP
rs1291393366 532 dbSNP
rs919923725 535 dbSNP
rs901590810 538 dbSNP
rs1361779690 541 dbSNP
rs929958547 562 dbSNP
rs1212544197 563 dbSNP
rs1361231213 564 dbSNP
rs1270669227 565 dbSNP
rs886049389 575 dbSNP
rs1047650889 578 dbSNP
rs886332656 580 dbSNP
rs1375090360 582 dbSNP
rs1424914797 588 dbSNP
rs1477354563 594 dbSNP
rs1003354171 598 dbSNP
rs1409719385 604 dbSNP
rs1420917252 607 dbSNP
rs1172468867 608 dbSNP
rs4251551 609 dbSNP
rs1268280509 620 dbSNP
rs138178820 621 dbSNP
rs4251552 624 dbSNP
rs1231360824 630 dbSNP
rs571568921 639 dbSNP
rs1306692538 654 dbSNP
rs1382393241 659 dbSNP
rs1273709525 661 dbSNP
rs1032235960 665 dbSNP
rs774327325 667 dbSNP
rs759513055 671 dbSNP
rs1282119251 676 dbSNP
rs538982204 682 dbSNP
rs968134071 685 dbSNP
rs1232531351 690 dbSNP
rs1304055227 694 dbSNP
rs999169502 699 dbSNP
rs1442014432 700 dbSNP
rs1355478281 709 dbSNP
rs1012064927 710 dbSNP
rs1429149406 711 dbSNP
rs1177291280 712 dbSNP
rs1031283332 723 dbSNP
rs1248751253 732 dbSNP
rs1349897385 738 dbSNP
rs1025260045 759 dbSNP
rs1176832346 771 dbSNP
rs1236595609 786 dbSNP
rs955596306 799 dbSNP
rs767298091 819 dbSNP
rs971470719 824 dbSNP
rs987001377 836 dbSNP
rs1205916967 839 dbSNP
rs752547785 841 dbSNP
rs1262399027 850 dbSNP
rs36085436 850 dbSNP
rs567630494 855 dbSNP
rs1313431799 857 dbSNP
rs964205390 860 dbSNP
rs974571998 863 dbSNP
rs1333823695 872 dbSNP
rs919993546 874 dbSNP
rs566365168 877 dbSNP
rs1406051022 880 dbSNP
rs919234375 883 dbSNP
rs1264341537 892 dbSNP
rs1337943769 900 dbSNP
rs1467707855 909 dbSNP
rs1450232575 921 dbSNP
rs1158403185 932 dbSNP
rs1419917101 943 dbSNP
rs1410391578 945 dbSNP
rs575385169 957 dbSNP
rs1180321151 960 dbSNP
rs929996797 964 dbSNP
rs1193622033 967 dbSNP
rs542787354 968 dbSNP
rs1258450882 974 dbSNP
rs982727525 989 dbSNP
rs4251584 990 dbSNP
rs1310967003 991 dbSNP
rs1244306328 995 dbSNP
rs1382486189 996 dbSNP
rs1316087744 997 dbSNP
rs1398319070 1004 dbSNP
rs909444945 1005 dbSNP
rs1288395636 1016 dbSNP
rs1379131391 1018 dbSNP
rs1454349746 1020 dbSNP
rs943640326 1025 dbSNP
rs974931358 1027 dbSNP
rs886049390 1029 dbSNP
rs1384387721 1031 dbSNP
rs923442747 1035 dbSNP
rs894972528 1041 dbSNP
rs1425511353 1050 dbSNP
rs933045680 1056 dbSNP
rs574043929 1068 dbSNP
rs1388385953 1076 dbSNP
rs541034481 1077 dbSNP
rs1043887141 1084 dbSNP
rs902160838 1096 dbSNP
rs559273571 1097 dbSNP
rs753237737 1103 dbSNP
rs1287794029 1106 dbSNP
rs777619096 1108 dbSNP
rs141847763 1109 dbSNP
rs1358213101 1111 dbSNP
rs886049391 1116 dbSNP
rs1444414663 1123 dbSNP
rs1307233144 1125 dbSNP
rs1030666347 1126 dbSNP
rs1012584531 1140 dbSNP
rs1342447129 1143 dbSNP
rs891423866 1144 dbSNP
rs1424283245 1145 dbSNP
rs1008486960 1146 dbSNP
rs1024767709 1147 dbSNP
rs1459227274 1149 dbSNP
rs1018494622 1154 dbSNP
rs879628134 1158 dbSNP
rs545334973 1162 dbSNP
rs886049392 1163 dbSNP
rs974243476 1165 dbSNP
rs563991845 1171 dbSNP
rs1026388168 1172 dbSNP
rs1212059044 1174 dbSNP
rs1337841798 1178 dbSNP
rs755598323 1188 dbSNP
rs1228803501 1195 dbSNP
rs531038940 1199 dbSNP
rs1016308230 1200 dbSNP
rs1249288027 1203 dbSNP
rs964957546 1204 dbSNP
rs1388365333 1211 dbSNP
rs781639576 1212 dbSNP
rs1394070331 1220 dbSNP
rs1167046982 1228 dbSNP
rs182497864 1273 dbSNP
rs111571285 1274 dbSNP
rs1173684531 1281 dbSNP
rs1457063703 1284 dbSNP
rs928635218 1289 dbSNP
rs150604439 1290 dbSNP
rs933500132 1295 dbSNP
rs528147840 1297 dbSNP
rs1435650248 1298 dbSNP
rs1250279179 1299 dbSNP
rs554628455 1303 dbSNP
rs770097373 1307 dbSNP
rs1459505239 1320 dbSNP
rs1261785225 1323 dbSNP
rs139778399 1326 dbSNP
rs563645022 1330 dbSNP
rs894815894 1334 dbSNP
rs1330582509 1336 dbSNP
rs868782659 1337 dbSNP
rs138875923 1340 dbSNP
rs1447204218 1340 dbSNP
rs368676868 1340 dbSNP
rs527750692 1340 dbSNP
rs531640584 1340 dbSNP
rs1372769017 1345 dbSNP
rs1402432300 1351 dbSNP
rs1392048288 1353 dbSNP
rs947906897 1364 dbSNP
rs186825265 1365 dbSNP
rs947970606 1371 dbSNP
rs1338954268 1374 dbSNP
rs1046755597 1376 dbSNP
rs906478387 1386 dbSNP
rs530704544 1387 dbSNP
rs1179703136 1389 dbSNP
rs1052144916 1390 dbSNP
rs4251553 1402 dbSNP
rs1337402070 1408 dbSNP
rs1197366962 1416 dbSNP
rs1251261330 1419 dbSNP
rs886514856 1421 dbSNP
rs1481210224 1428 dbSNP
rs1006319075 1432 dbSNP
rs1350277833 1433 dbSNP
rs886049393 1436 dbSNP
rs1016236009 1439 dbSNP
rs965092209 1440 dbSNP
rs974994982 1445 dbSNP
rs1197073311 1449 dbSNP
rs1253405049 1454 dbSNP
rs1410837097 1457 dbSNP
rs1007868513 1461 dbSNP
rs1018960946 1464 dbSNP
rs1188179787 1468 dbSNP
rs900063080 1473 dbSNP
rs1383856397 1475 dbSNP
rs1030990382 1482 dbSNP
rs955009469 1486 dbSNP
rs1158868213 1490 dbSNP
rs1419841078 1492 dbSNP
rs1383786361 1494 dbSNP
rs1183315227 1499 dbSNP
rs1473429894 1501 dbSNP
rs1239693440 1504 dbSNP
rs996106416 1507 dbSNP
rs1446486345 1509 dbSNP
rs1287096672 1515 dbSNP
rs536073958 1516 dbSNP
rs924118620 1517 dbSNP
rs554707596 1525 dbSNP
rs542838156 1526 dbSNP
rs1379860618 1528 dbSNP
rs574051595 1535 dbSNP
rs1285862193 1536 dbSNP
rs951503711 1543 dbSNP
rs139675032 1544 dbSNP
rs1300020653 1546 dbSNP
rs1401482605 1548 dbSNP
rs1035700812 1555 dbSNP
rs1400120013 1557 dbSNP
rs1163389170 1558 dbSNP
rs1406296299 1564 dbSNP
rs1414468480 1571 dbSNP
rs960051691 1573 dbSNP
rs1475336481 1576 dbSNP
rs947698293 1586 dbSNP
rs778083287 1589 dbSNP
rs969326979 1591 dbSNP
rs1268412829 1592 dbSNP
rs1220624655 1594 dbSNP
rs927867279 1595 dbSNP
rs1291670157 1604 dbSNP
rs553037446 1608 dbSNP
rs925111508 1614 dbSNP
rs1278308924 1620 dbSNP
rs1046896967 1622 dbSNP
rs1295258164 1628 dbSNP
rs1302132809 1631 dbSNP
rs1437713233 1636 dbSNP
rs1351989663 1646 dbSNP
rs1327203043 1653 dbSNP
rs1409921473 1657 dbSNP
rs576135948 1669 dbSNP
rs192534409 1683 dbSNP
rs1006286549 1687 dbSNP
rs1037802914 1688 dbSNP
rs778897449 1688 dbSNP
rs544979835 1693 dbSNP
rs543426658 1697 dbSNP
rs1428931131 1701 dbSNP
rs1211223658 1719 dbSNP
rs771014920 1720 dbSNP
rs912290913 1725 dbSNP
rs1487065546 1726 dbSNP
rs1202127376 1733 dbSNP
rs943724908 1736 dbSNP
rs1039357815 1739 dbSNP
rs1419902802 1742 dbSNP
rs1219999134 1749 dbSNP
rs900615971 1750 dbSNP
rs1299912088 1752 dbSNP
rs558662153 1754 dbSNP
rs1393412787 1755 dbSNP
rs1030372928 1760 dbSNP
rs144535012 1761 dbSNP
rs1446473589 1763 dbSNP
rs1004317063 1773 dbSNP
rs4251554 1778 dbSNP
rs1288709295 1780 dbSNP
rs1405452470 1784 dbSNP
rs1031103439 1790 dbSNP
rs960102286 1791 dbSNP
rs1435159514 1792 dbSNP
rs4251555 1795 dbSNP
rs1438835070 1806 dbSNP
rs1234787571 1817 dbSNP
rs1238789323 1822 dbSNP
rs1384487633 1824 dbSNP
rs79794889 1824 dbSNP
rs1239954258 1825 dbSNP
rs1281674097 1825 dbSNP
rs1459881436 1825 dbSNP
rs538947924 1825 dbSNP
rs1299800654 1826 dbSNP
rs1378110902 1838 dbSNP
rs1311840319 1840 dbSNP
rs1022964172 1842 dbSNP
rs1347716885 1843 dbSNP
rs1451119513 1843 dbSNP
rs1046433865 1844 dbSNP
rs1281792345 1845 dbSNP
rs1351079943 1846 dbSNP
rs1303536180 1848 dbSNP
rs1467627359 1849 dbSNP
rs1214594997 1856 dbSNP
rs906590166 1862 dbSNP
rs1242559102 1865 dbSNP
rs1343711031 1872 dbSNP
rs528687727 1877 dbSNP
rs1420466093 1878 dbSNP
rs1380701527 1882 dbSNP
rs546754318 1884 dbSNP
rs1180223029 1887 dbSNP
rs4251556 1888 dbSNP
rs183931852 1889 dbSNP
rs1181990076 1891 dbSNP
rs4251557 1894 dbSNP
rs969204513 1895 dbSNP
rs4251558 1896 dbSNP
rs1288637453 1897 dbSNP
rs987953923 1900 dbSNP
rs1321693581 1908 dbSNP
rs1314047781 1909 dbSNP
rs912342735 1911 dbSNP
rs927658723 1926 dbSNP
rs536497843 1934 dbSNP
rs1433337545 1939 dbSNP
rs548182708 1942 dbSNP
rs1047033149 1950 dbSNP
rs1400866400 1956 dbSNP
rs930937716 1957 dbSNP
rs1362649542 1964 dbSNP
rs1370949337 1966 dbSNP
rs1442215836 1974 dbSNP
rs12321678 1975 dbSNP
rs1165393537 1979 dbSNP
rs1425421062 1983 dbSNP
rs941161072 1984 dbSNP
rs1039565211 1989 dbSNP
rs1488434491 1992 dbSNP
rs886049394 1992 dbSNP
rs900583855 1994 dbSNP
rs1220792611 2000 dbSNP
rs1488355625 2004 dbSNP
rs866115650 2010 dbSNP
rs533723416 2015 dbSNP
rs1004369443 2030 dbSNP
rs1052158259 2039 dbSNP
rs371821781 2041 dbSNP
rs999703017 2044 dbSNP
rs1219295960 2049 dbSNP
rs1342670400 2051 dbSNP
rs1013007384 2054 dbSNP
rs533412197 2062 dbSNP
rs958305099 2063 dbSNP
rs1293843338 2069 dbSNP
rs776314485 2072 dbSNP
rs1023839514 2073 dbSNP
rs1195395167 2075 dbSNP
rs886049395 2077 dbSNP
rs1196311237 2078 dbSNP
rs776764561 2081 dbSNP
rs111813306 2084 dbSNP
rs1211962231 2089 dbSNP
rs534645871 2101 dbSNP
rs1199416042 2109 dbSNP
rs1320091607 2111 dbSNP
rs1408986015 2114 dbSNP
rs951042290 2116 dbSNP
rs374721629 2124 dbSNP
rs1000582055 2132 dbSNP
rs982473872 2134 dbSNP
rs909783852 2141 dbSNP
rs956596544 2142 dbSNP
rs1163251579 2150 dbSNP
rs1398095253 2151 dbSNP
rs1330585598 2158 dbSNP
rs1466015976 2160 dbSNP
rs1401861923 2161 dbSNP
rs1394175142 2173 dbSNP
rs988006180 2175 dbSNP
rs941298584 2179 dbSNP
rs1141168 2189 dbSNP
rs1453346562 2193 dbSNP
rs965545616 2195 dbSNP
rs1438210059 2197 dbSNP
rs563217241 2199 dbSNP
rs1179821855 2201 dbSNP
rs920982775 2203 dbSNP
rs1261369686 2211 dbSNP
rs1199907986 2221 dbSNP
rs769976979 2224 dbSNP
rs932033974 2239 dbSNP
rs1051867807 2241 dbSNP
rs557276770 2256 dbSNP
rs983740537 2262 dbSNP
rs890567306 2266 dbSNP
rs4251560 2267 dbSNP
rs1057278340 2272 dbSNP
rs543346753 2302 dbSNP
rs895994062 2309 dbSNP
rs1402544066 2316 dbSNP
rs1173967177 2320 dbSNP
rs1417410989 2326 dbSNP
rs1052424873 2337 dbSNP
rs368152755 2346 dbSNP
rs1236203580 2347 dbSNP
rs1292496086 2349 dbSNP
rs749964168 2350 dbSNP
rs1000225908 2352 dbSNP
rs554949427 2359 dbSNP
rs1214738177 2362 dbSNP
rs1353194104 2365 dbSNP
rs1285080840 2370 dbSNP
rs1240565318 2372 dbSNP
rs892426318 2375 dbSNP
rs1282344655 2386 dbSNP
rs1437090337 2390 dbSNP
rs1446739908 2391 dbSNP
rs1009488166 2396 dbSNP
rs1335555548 2397 dbSNP
rs1397778543 2403 dbSNP
rs1203951793 2404 dbSNP
rs1233478558 2405 dbSNP
rs747864158 2407 dbSNP
rs905379274 2414 dbSNP
rs1186037290 2415 dbSNP
rs1019913723 2423 dbSNP
rs1473377795 2433 dbSNP
rs9849 2434 dbSNP
rs1191547690 2437 dbSNP
rs975626319 2438 dbSNP
rs1264144395 2458 dbSNP
rs1217143722 2463 dbSNP
rs1448516705 2464 dbSNP
rs1034764177 2471 dbSNP
rs886049396 2472 dbSNP
rs982444098 2476 dbSNP
rs1356907906 2482 dbSNP
rs1294635218 2486 dbSNP
rs1216225057 2487 dbSNP
rs1339502282 2489 dbSNP
rs1298422791 2496 dbSNP
rs1401387302 2497 dbSNP
rs1016645578 2500 dbSNP
rs1323247554 2516 dbSNP
rs1406491470 2532 dbSNP
rs1416549791 2534 dbSNP
rs908222238 2536 dbSNP
rs1477625721 2537 dbSNP
rs76405665 2545 dbSNP
rs939656158 2547 dbSNP
rs1329009353 2549 dbSNP
rs1355745236 2554 dbSNP
rs962588846 2559 dbSNP
rs145856072 2563 dbSNP
rs756483703 2564 dbSNP
rs549897461 2566 dbSNP
rs549623720 2578 dbSNP
rs1451923265 2579 dbSNP
rs1268153390 2581 dbSNP
rs948939629 2588 dbSNP
rs1316921847 2590 dbSNP
rs987060204 2591 dbSNP
rs904638568 2595 dbSNP
rs1273851050 2600 dbSNP
rs1274738167 2612 dbSNP
rs147831464 2613 dbSNP
rs1351922525 2618 dbSNP
rs1329734024 2624 dbSNP
rs1465493369 2630 dbSNP
rs1401284416 2631 dbSNP
rs1173152202 2634 dbSNP
rs1053153231 2643 dbSNP
rs1190499128 2649 dbSNP
rs891806691 2649 dbSNP
rs1257083851 2656 dbSNP
rs1486098856 2659 dbSNP
rs532207331 2666 dbSNP
rs375914722 2667 dbSNP
rs12310328 2670 dbSNP
rs893810633 2678 dbSNP
rs1040984229 2690 dbSNP
rs1475399217 2698 dbSNP
rs749524568 2703 dbSNP
rs1168997070 2704 dbSNP
rs4251562 2705 dbSNP
rs1277315179 2717 dbSNP
rs1432339561 2724 dbSNP
rs766712571 2726 dbSNP
rs1375709279 2735 dbSNP
rs1028574565 2752 dbSNP
rs369823166 2753 dbSNP
rs562549392 2754 dbSNP
rs1378159380 2757 dbSNP
rs905473142 2760 dbSNP
rs1003697741 2761 dbSNP
rs4251563 2762 dbSNP
rs1325606665 2767 dbSNP
rs961048228 2770 dbSNP
rs1431475202 2772 dbSNP
rs1459545011 2775 dbSNP
rs886851428 2777 dbSNP
rs992436106 2782 dbSNP
rs1156822426 2795 dbSNP
rs771957948 2805 dbSNP
rs1271871767 2815 dbSNP
rs1178518229 2816 dbSNP
rs1482073815 2817 dbSNP
rs4251564 2818 dbSNP
rs1210189963 2819 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguagaaggaaGUCGGAg 5'
                     | |||| 
Target 5' ---ccauucccCUGCCUc 3'
1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51135.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51135.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_001145256 | 3UTR | CUCAGCCUCCCCAGUAGCUGGGACUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_016123 | 3UTR | CUCCCCAGUAGCUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000431837.1 | 3UTR | CCAUUCCCCUGCCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000431837.1 | 3UTR | UUCACGCCAUUCCCCUGCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000431837.1 | 3UTR | UUCACGCCAUUCCCCUGCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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