miRTarBase - #MIRT515210


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pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-3p
Sequence 45| UGUGUUAGAAUAGGGGCAAUAA |66
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8332435 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1056852374 2 dbSNP
rs894329932 11 dbSNP
rs1429410622 12 dbSNP
rs13299349 13 dbSNP
rs539052066 14 dbSNP
rs1028341616 15 dbSNP
rs969346701 16 dbSNP
rs1176815888 19 dbSNP
rs1474970048 19 dbSNP
rs1240079601 21 dbSNP
Putative Targets

Gene Information
Gene Symbol CRCP   
Synonyms CGRP-RCP, CGRPRCP, RCP, RCP9
Description CGRP receptor component
Transcript NM_001040647   
Other Transcripts NM_001040648 , NM_001142414 , NM_014478   
Expression
Putative miRNA Targets on CRCP
3'UTR of CRCP
(miRNA target sites are highlighted)		 
>CRCP|NM_001040647|3'UTR
   1 AAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATT
  81 TGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAATAAGTTAAAAAGAAATATTT
 161 GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGGGGACAGTGACCGCG
 241 GACCCCTCTGTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCACAGCGGGGAAAATG
 321 CTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTTCCCTGGGAACTTACTAAGGGGCCCAGAGCACTG
 401 TTGGAAGTCTGGTTAGAGTCCCCAGAGAGTTACTCTAAGTTAAAATGAGCCACTGACCTTGGCTCACCTTAGAGGAATTT
 481 CCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGGCA
 561 GGGGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGAAAACGGGCACTCCAGGCT
 641 TAGTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGC
 721 AGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTGCACAACAGTCAAATTGTTTGTTCCTTTAAAAAGGACACAATTAG
 801 CCTGGCACGGTGACTCATGCTTGTAATCCCAGCACTTTGGGAGGGCAAGGCAGGCGGATCACCTGAGGTCAGGAGTTTGA
 881 GACCAGCCTCACCAACATGGAAAAACCCCATCTCTACTAAAAAAATACAAAATTAACCAGGGGTGATGGCACATTCCTGT
 961 AATCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGAGGTGAGCCAAGATTGCAC
1041 CATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTTCATCTAAAAAACAGAAAATATTAAGATGATTACCATGTGAAAAC
1121 CTTTTTAATATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGAA
1201 AATCGGATTTTCCACATTCACTTTCTTCCCTGTTTTAGGGAAGAAAATGATCATAGACATTCGATTTTCCAAATTGGCGC
1281 TCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCCGTCCATCCATCCCAGTCCCCAGGCATCTTAA
1361 CCTTACCATCTGAGCTTCAGCTGAAATCTGTTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCA
1441 CACCTGTAATCCCAGCACTTTGGGAGGCGGAGGCTAGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATG
1521 GTGAAACCCCCATCTCTACTAAAGATATAAAAAACTAGCCGAGCGTGGTGTTGCATGCCTGTGATCCCAGCTACTCGGGA
1601 GGCTGAGGCGGGGGAATCGCTTGAACCGGGGAGGCAGAGGTTGCAGTGAGCCAGATCGTGCATTGCACTCCAGCCTGGCC
1681 GACAGGGTGAGACTCCATCTCAAAAAAGAGAAAGTACCAGATTGTACTTTTAAATCTGTCTAGCGTATTGAGAATTTTAG
1761 TGGGAGCTGTTGATTTATTTCTCAGGGCATACATGTGCCAATCTGTCTCATTGTTGTCTCTCTCTTTTTTTTTTTTTTTT
1841 TTGAGACAGTCTCGCTGTGTTGCCCAGGAGTGCAGTGGCACGATCTCTGCTCACTGCAACCTCTGCCTCCCAGATTCAAG
1921 CGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGGGACTTACAGGCACGTACCACTATACCCTGCTAAAATTTGTATTTTTA
2001 GTAGAGACAGGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATATGTTAGGTGGTTTTTCT
2081 TGATGGATTTAGGGTTAACCTAGTTAATAATAAATTGTTTCCAGGTAATTATCAAGTTTTGTCATTTTATAAATCTGAAG
2161 AGTTAATATTGTCATCGATACAAATAAAGTGAAATCTGACTGAGGCTAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aaUAACGGGGAUAAGAUUGUGu 5'
            | ||:|:|| ||:|||||| 
Target 5' gtAATGTCTCT-TTTTAACACt 3'
 2038 - 2058 155.00 -15.60
2 
miRNA  3' aaUAACGG--GGAUAAGAUU-GUGu 5'
            :||| |  ||| ||||:| ||| 
Target 5' gtGTTGGCTGCCT-TTCTGACCACc 3'
 664 - 687 117.00 -13.40
3 
miRNA  3' aauaaCGGGGAUAA---GAUUGUGu 5'
               | | | |||   ||::||| 
Target 5' aaaagGACACAATTAGCCTGGCACg 3'
 785 - 809 117.00 -11.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31600471 6 COSMIC
COSN30615380 21 COSMIC
COSN18719456 22 COSMIC
COSN30524137 61 COSMIC
COSN30495160 65 COSMIC
COSN31578092 86 COSMIC
COSN20064290 158 COSMIC
COSN9506246 386 COSMIC
COSN30175788 546 COSMIC
COSN15302897 628 COSMIC
COSN26556302 646 COSMIC
COSN17076218 1348 COSMIC
COSN17280886 1695 COSMIC
COSN32061343 1843 COSMIC
COSN14891954 1862 COSMIC
COSN17037528 2007 COSMIC
COSN18953201 2134 COSMIC
rs875971 252 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1357355973 3 dbSNP
rs749987614 6 dbSNP
rs754807926 8 dbSNP
rs1282258939 14 dbSNP
rs1488037087 15 dbSNP
rs1217428335 16 dbSNP
rs1266023283 17 dbSNP
rs1484963086 18 dbSNP
rs143456688 19 dbSNP
rs779924167 20 dbSNP
rs969034944 21 dbSNP
rs751502627 22 dbSNP
rs1164698429 23 dbSNP
rs541138195 28 dbSNP
rs1336931569 32 dbSNP
rs1418610244 41 dbSNP
rs903172974 45 dbSNP
rs781067936 52 dbSNP
rs557466509 56 dbSNP
rs1413017844 61 dbSNP
rs181793565 62 dbSNP
rs1356196665 63 dbSNP
rs983612140 69 dbSNP
rs765989328 75 dbSNP
rs762795573 77 dbSNP
rs1395901888 91 dbSNP
rs1399894743 98 dbSNP
rs1403701220 105 dbSNP
rs73699725 106 dbSNP
rs1342710718 108 dbSNP
rs1178005094 109 dbSNP
rs545696734 110 dbSNP
rs1237328019 132 dbSNP
rs562490900 144 dbSNP
rs1228601304 148 dbSNP
rs748143716 149 dbSNP
rs1247269253 153 dbSNP
rs942086780 157 dbSNP
rs1319407054 159 dbSNP
rs1037756125 164 dbSNP
rs1223980229 166 dbSNP
rs531499304 170 dbSNP
rs1023225686 192 dbSNP
rs575351642 194 dbSNP
rs922052143 200 dbSNP
rs755990168 201 dbSNP
rs147138211 217 dbSNP
rs1281794733 224 dbSNP
rs1015377073 230 dbSNP
rs1347057229 231 dbSNP
rs561713662 238 dbSNP
rs1485715119 239 dbSNP
rs890364364 240 dbSNP
rs999862152 241 dbSNP
rs1267891264 244 dbSNP
rs1487498027 246 dbSNP
rs114209437 251 dbSNP
rs875971 252 dbSNP
rs1010778624 253 dbSNP
rs570462940 256 dbSNP
rs1193589762 257 dbSNP
rs539483826 269 dbSNP
rs1023386939 272 dbSNP
rs910713851 273 dbSNP
rs548236904 274 dbSNP
rs969152476 280 dbSNP
rs1364783066 281 dbSNP
rs947596939 284 dbSNP
rs1358806230 285 dbSNP
rs770515570 285 dbSNP
rs1315009625 298 dbSNP
rs1436289497 301 dbSNP
rs1377974983 303 dbSNP
rs1175179903 311 dbSNP
rs2292936 312 dbSNP
rs1376081049 315 dbSNP
rs960297016 316 dbSNP
rs745482498 320 dbSNP
rs1057441861 325 dbSNP
rs537599976 329 dbSNP
rs2292937 330 dbSNP
rs535751630 334 dbSNP
rs1387775008 335 dbSNP
rs1383310338 344 dbSNP
rs1255769726 351 dbSNP
rs1208515911 353 dbSNP
rs186186866 361 dbSNP
rs777119968 366 dbSNP
rs1309757552 377 dbSNP
rs1323284235 384 dbSNP
rs1329733932 387 dbSNP
rs948635302 393 dbSNP
rs1295261094 398 dbSNP
rs1415623152 399 dbSNP
rs190509544 400 dbSNP
rs1302018354 401 dbSNP
rs138775484 407 dbSNP
rs535128829 409 dbSNP
rs1171307665 421 dbSNP
rs922001496 423 dbSNP
rs576222141 428 dbSNP
rs1423999259 429 dbSNP
rs1255106056 430 dbSNP
rs1180432843 434 dbSNP
rs1051685823 438 dbSNP
rs1259200734 457 dbSNP
rs911885072 464 dbSNP
rs935230710 466 dbSNP
rs142728057 476 dbSNP
rs893763877 478 dbSNP
rs867767219 482 dbSNP
rs946516689 485 dbSNP
rs1044950404 486 dbSNP
rs1029751822 490 dbSNP
rs1205664925 493 dbSNP
rs755277093 494 dbSNP
rs369369726 508 dbSNP
rs1449663185 509 dbSNP
rs577713213 512 dbSNP
rs1003314246 513 dbSNP
rs1017839865 515 dbSNP
rs1398079422 516 dbSNP
rs968828888 518 dbSNP
rs1439393871 520 dbSNP
rs1457989797 521 dbSNP
rs1156900029 523 dbSNP
rs1367492544 524 dbSNP
rs1034649931 531 dbSNP
rs1162265364 537 dbSNP
rs1420563613 545 dbSNP
rs1239166392 551 dbSNP
rs1454718611 555 dbSNP
rs1293463714 558 dbSNP
rs773195556 559 dbSNP
rs1003913976 571 dbSNP
rs1456807117 573 dbSNP
rs538915425 578 dbSNP
rs1355731916 581 dbSNP
rs1015587384 588 dbSNP
rs1241440389 594 dbSNP
rs963621538 596 dbSNP
rs763039523 600 dbSNP
rs956325029 603 dbSNP
rs1374508290 609 dbSNP
rs992959412 610 dbSNP
rs1327073219 614 dbSNP
rs563328071 617 dbSNP
rs144793361 618 dbSNP
rs1044326131 627 dbSNP
rs316305 628 dbSNP
rs1318226554 630 dbSNP
rs148551979 633 dbSNP
rs941152610 635 dbSNP
rs1397353432 641 dbSNP
rs1239601753 647 dbSNP
rs561927029 649 dbSNP
rs1200214490 651 dbSNP
rs527445169 657 dbSNP
rs1036870434 663 dbSNP
rs912016039 665 dbSNP
rs1207018471 670 dbSNP
rs1488729625 682 dbSNP
rs142911355 684 dbSNP
rs564208807 691 dbSNP
rs1351243858 696 dbSNP
rs889432655 699 dbSNP
rs79282496 713 dbSNP
rs199497946 717 dbSNP
rs746267991 735 dbSNP
rs569521772 743 dbSNP
rs758204430 744 dbSNP
rs1401331949 754 dbSNP
rs76817934 759 dbSNP
rs549371866 764 dbSNP
rs1164241609 775 dbSNP
rs1418190707 780 dbSNP
rs939046994 781 dbSNP
rs1404788373 795 dbSNP
rs1173598332 796 dbSNP
rs1056607800 797 dbSNP
rs1264138081 799 dbSNP
rs886899481 810 dbSNP
rs956270525 816 dbSNP
rs1478209762 817 dbSNP
rs1262667739 828 dbSNP
rs1367228974 831 dbSNP
rs1004266064 833 dbSNP
rs917371068 839 dbSNP
rs970437021 843 dbSNP
rs1166073525 844 dbSNP
rs1016628765 854 dbSNP
rs62465483 855 dbSNP
rs1464738674 856 dbSNP
rs1344151054 857 dbSNP
rs995067290 858 dbSNP
rs1219863490 861 dbSNP
rs1340610011 867 dbSNP
rs1277081496 873 dbSNP
rs777720510 876 dbSNP
rs1029084191 882 dbSNP
rs1335251445 885 dbSNP
rs909764052 888 dbSNP
rs941265859 889 dbSNP
rs1173465619 902 dbSNP
rs953540566 903 dbSNP
rs1015554251 908 dbSNP
rs1391454900 909 dbSNP
rs1422996103 915 dbSNP
rs987696265 918 dbSNP
rs1311475971 919 dbSNP
rs1473883646 920 dbSNP
rs918415140 922 dbSNP
rs749163116 923 dbSNP
rs1353454109 926 dbSNP
rs534935466 927 dbSNP
rs1441637324 931 dbSNP
rs1276347314 939 dbSNP
rs557923134 943 dbSNP
rs1318608390 944 dbSNP
rs889561444 951 dbSNP
rs956842919 953 dbSNP
rs1273529032 955 dbSNP
rs1043381764 956 dbSNP
rs988520249 965 dbSNP
rs1284461272 973 dbSNP
rs1447678713 975 dbSNP
rs1339094627 976 dbSNP
rs1333860576 981 dbSNP
rs577751899 983 dbSNP
rs915266374 984 dbSNP
rs1253279751 986 dbSNP
rs1481119801 989 dbSNP
rs1181320727 992 dbSNP
rs537128818 995 dbSNP
rs1168558793 997 dbSNP
rs182808311 998 dbSNP
rs1414719102 1000 dbSNP
rs756828231 1007 dbSNP
rs1241031633 1008 dbSNP
rs1031944789 1010 dbSNP
rs1458142121 1017 dbSNP
rs188186351 1021 dbSNP
rs891944466 1025 dbSNP
rs1323009371 1032 dbSNP
rs1290079035 1035 dbSNP
rs1227374588 1040 dbSNP
rs980689676 1041 dbSNP
rs1014438815 1051 dbSNP
rs1024788936 1064 dbSNP
rs970172857 1066 dbSNP
rs778279053 1072 dbSNP
rs980068157 1073 dbSNP
rs1438632726 1090 dbSNP
rs1323053208 1106 dbSNP
rs1403782826 1106 dbSNP
rs939177073 1113 dbSNP
rs1056321519 1120 dbSNP
rs542107145 1135 dbSNP
rs1016937435 1141 dbSNP
rs908274237 1143 dbSNP
rs190970226 1148 dbSNP
rs1462216479 1151 dbSNP
rs1489458585 1157 dbSNP
rs1301730424 1162 dbSNP
rs1489690376 1163 dbSNP
rs962744970 1164 dbSNP
rs939798577 1167 dbSNP
rs972627514 1173 dbSNP
rs1038420723 1179 dbSNP
rs572293676 1180 dbSNP
rs1293835538 1188 dbSNP
rs1339825935 1189 dbSNP
rs1212583254 1193 dbSNP
rs1434431593 1203 dbSNP
rs996503555 1205 dbSNP
rs28581829 1206 dbSNP
rs1420027624 1220 dbSNP
rs1209707285 1229 dbSNP
rs1359652994 1231 dbSNP
rs1278230885 1253 dbSNP
rs1156751713 1264 dbSNP
rs1434808203 1265 dbSNP
rs564249922 1274 dbSNP
rs1190079361 1276 dbSNP
rs1009467716 1278 dbSNP
rs1479170807 1279 dbSNP
rs903509531 1280 dbSNP
rs1216867951 1281 dbSNP
rs1487795796 1290 dbSNP
rs1019125996 1293 dbSNP
rs1474753874 1296 dbSNP
rs533081169 1298 dbSNP
rs956983322 1299 dbSNP
rs1009659364 1303 dbSNP
rs892068229 1306 dbSNP
rs1022273177 1311 dbSNP
rs1024487666 1319 dbSNP
rs968031267 1330 dbSNP
rs316306 1331 dbSNP
rs781691781 1334 dbSNP
rs748482270 1335 dbSNP
rs1392650965 1341 dbSNP
rs960684043 1348 dbSNP
rs992371204 1351 dbSNP
rs962691501 1364 dbSNP
rs770225105 1367 dbSNP
rs760998304 1375 dbSNP
rs939725594 1381 dbSNP
rs529815491 1398 dbSNP
rs538193043 1403 dbSNP
rs972746676 1404 dbSNP
rs1313027392 1409 dbSNP
rs1183925530 1419 dbSNP
rs1038077714 1424 dbSNP
rs1025943222 1435 dbSNP
rs563304490 1436 dbSNP
rs1428607218 1438 dbSNP
rs768167231 1445 dbSNP
rs543536882 1451 dbSNP
rs1218147976 1456 dbSNP
rs1305943748 1458 dbSNP
rs528837290 1468 dbSNP
rs889339843 1469 dbSNP
rs987156678 1473 dbSNP
rs1009171756 1480 dbSNP
rs1450317900 1481 dbSNP
rs1402432117 1482 dbSNP
rs1170713191 1485 dbSNP
rs1218796110 1486 dbSNP
rs1464678533 1492 dbSNP
rs1370919935 1503 dbSNP
rs1166491158 1513 dbSNP
rs1301536894 1514 dbSNP
rs1255904448 1519 dbSNP
rs1040906351 1526 dbSNP
rs568187238 1527 dbSNP
rs979136259 1531 dbSNP
rs548165174 1548 dbSNP
rs1267360607 1549 dbSNP
rs575727069 1549 dbSNP
rs1321391082 1564 dbSNP
rs892645082 1565 dbSNP
rs143637899 1566 dbSNP
rs1445755230 1569 dbSNP
rs1022384107 1578 dbSNP
rs968146870 1581 dbSNP
rs759457228 1583 dbSNP
rs1390253912 1588 dbSNP
rs1002190086 1589 dbSNP
rs934976133 1595 dbSNP
rs1458072653 1597 dbSNP
rs1367585784 1598 dbSNP
rs1052112040 1602 dbSNP
rs1476044309 1605 dbSNP
rs1381409217 1610 dbSNP
rs35288506 1610 dbSNP
rs763365966 1610 dbSNP
rs566286049 1611 dbSNP
rs960883441 1614 dbSNP
rs370847277 1619 dbSNP
rs992092370 1620 dbSNP
rs1210561484 1621 dbSNP
rs908337442 1625 dbSNP
rs1250748857 1627 dbSNP
rs961233985 1628 dbSNP
rs1455337348 1629 dbSNP
rs1238241276 1630 dbSNP
rs906013421 1632 dbSNP
rs1302741089 1638 dbSNP
rs1364492658 1644 dbSNP
rs1300917926 1645 dbSNP
rs1173689860 1650 dbSNP
rs1361561782 1651 dbSNP
rs1379178206 1652 dbSNP
rs771100813 1658 dbSNP
rs1398835872 1659 dbSNP
rs919665888 1661 dbSNP
rs1469033762 1667 dbSNP
rs1001733440 1669 dbSNP
rs769677861 1678 dbSNP
rs1432678446 1679 dbSNP
rs932417325 1681 dbSNP
rs774357914 1682 dbSNP
rs759760553 1687 dbSNP
rs994540763 1688 dbSNP
rs1435474966 1698 dbSNP
rs1025635541 1703 dbSNP
rs955598551 1704 dbSNP
rs1323728148 1708 dbSNP
rs1257724312 1720 dbSNP
rs1233264128 1725 dbSNP
rs528746008 1728 dbSNP
rs1344301946 1735 dbSNP
rs146772680 1746 dbSNP
rs1401424586 1748 dbSNP
rs571481964 1750 dbSNP
rs1318013249 1757 dbSNP
rs1129531 1761 dbSNP
rs963817047 1765 dbSNP
rs1173686476 1772 dbSNP
rs892748320 1778 dbSNP
rs924995563 1788 dbSNP
rs956463856 1790 dbSNP
rs945506730 1794 dbSNP
rs1478259886 1795 dbSNP
rs1043945176 1796 dbSNP
rs1129532 1798 dbSNP
rs903909123 1802 dbSNP
rs1225909525 1804 dbSNP
rs1445076661 1806 dbSNP
rs1258074100 1808 dbSNP
rs756598729 1810 dbSNP
rs1322780874 1813 dbSNP
rs1421085744 1817 dbSNP
rs1219956602 1822 dbSNP
rs1318122076 1825 dbSNP
rs1335356689 1825 dbSNP
rs138993929 1825 dbSNP
rs749363558 1825 dbSNP
rs767773387 1825 dbSNP
rs1491474806 1826 dbSNP
rs557126766 1827 dbSNP
rs1033639264 1828 dbSNP
rs896493734 1830 dbSNP
rs1255336606 1842 dbSNP
rs1473933374 1843 dbSNP
rs773564797 1843 dbSNP
rs1027509552 1844 dbSNP
rs1231747128 1845 dbSNP
rs182805986 1846 dbSNP
rs1460777065 1849 dbSNP
rs1241230258 1855 dbSNP
rs1470799122 1857 dbSNP
rs2460427 1862 dbSNP
rs1408627190 1863 dbSNP
rs536288331 1865 dbSNP
rs1460895421 1866 dbSNP
rs1358079168 1875 dbSNP
rs917591049 1880 dbSNP
rs1381181000 1882 dbSNP
rs1162508701 1883 dbSNP
rs117490174 1889 dbSNP
rs1326975378 1892 dbSNP
rs1129541 1894 dbSNP
rs1407269311 1895 dbSNP
rs1129542 1899 dbSNP
rs1391749713 1902 dbSNP
rs1163936613 1915 dbSNP
rs1443783596 1922 dbSNP
rs1462128736 1923 dbSNP
rs572396572 1927 dbSNP
rs541303781 1929 dbSNP
rs1140143 1933 dbSNP
rs949098444 1940 dbSNP
rs187467471 1947 dbSNP
rs1129546 1949 dbSNP
rs1015492356 1961 dbSNP
rs961620758 1967 dbSNP
rs973848880 1968 dbSNP
rs1222131955 1971 dbSNP
rs1357763289 1971 dbSNP
rs1312000768 1979 dbSNP
rs1241463042 1981 dbSNP
rs760516665 1982 dbSNP
rs1373308851 1986 dbSNP
rs1277799141 1988 dbSNP
rs1438739638 1991 dbSNP
rs1026796402 1993 dbSNP
rs1129529 2001 dbSNP
rs953758676 2002 dbSNP
rs577871886 2003 dbSNP
rs1129547 2004 dbSNP
rs912336794 2007 dbSNP
rs1335910869 2013 dbSNP
rs927545376 2018 dbSNP
rs937451759 2019 dbSNP
rs1038553886 2020 dbSNP
rs1047476 2023 dbSNP
rs1213860098 2024 dbSNP
rs543508069 2028 dbSNP
rs994258840 2031 dbSNP
rs1478728932 2033 dbSNP
rs1269086297 2038 dbSNP
rs563287344 2039 dbSNP
rs1216981176 2042 dbSNP
rs1205974444 2047 dbSNP
rs1233004903 2048 dbSNP
rs1316800903 2058 dbSNP
rs1474814111 2063 dbSNP
rs1282773186 2067 dbSNP
rs1220962024 2073 dbSNP
rs1368377880 2083 dbSNP
rs914144310 2088 dbSNP
rs1419675056 2089 dbSNP
rs945622315 2100 dbSNP
rs192514553 2101 dbSNP
rs1167172276 2112 dbSNP
rs1342670345 2118 dbSNP
rs184596184 2119 dbSNP
rs1431247901 2121 dbSNP
rs559280849 2124 dbSNP
rs1344468488 2125 dbSNP
rs766154326 2130 dbSNP
rs1411913137 2132 dbSNP
rs1329565418 2133 dbSNP
rs1156859245 2137 dbSNP
rs1416165131 2141 dbSNP
rs1008658059 2159 dbSNP
rs938043886 2167 dbSNP
rs552418974 2169 dbSNP
rs896587676 2172 dbSNP
rs1013575554 2173 dbSNP
rs1187401873 2180 dbSNP
rs528783000 2189 dbSNP
rs1016024792 2196 dbSNP
rs1240778617 2204 dbSNP
rs1218402433 2211 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 27297.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aauaacggggauaaGAUUGUGu 5'
                        ||||||| 
Target 5' ----------cuggCUAACACg 3'
 		1 - 12
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000415001.2 | 3UTR | CUGGCUAACACGGUGAAACCCUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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60 hsa-miR-3152-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT068760 RB1 RB transcriptional corepressor 1 2 2
MIRT142268 DCTN5 dynactin subunit 5 2 8
MIRT179443 TBRG1 transforming growth factor beta regulator 1 2 2
MIRT221382 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 6
MIRT332510 CD81 CD81 molecule 2 2
MIRT442419 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT445519 PLXDC2 plexin domain containing 2 2 2
MIRT464185 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT467933 SLC16A6 solute carrier family 16 member 6 2 2
MIRT468378 SETD5 SET domain containing 5 2 2
MIRT468486 SESN3 sestrin 3 2 2
MIRT468928 RPS24 ribosomal protein S24 2 2
MIRT478171 DENND5B DENN domain containing 5B 2 2
MIRT490447 GLUD1 glutamate dehydrogenase 1 2 2
MIRT494675 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT502287 GNG5 G protein subunit gamma 5 2 6
MIRT506078 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 6
MIRT508008 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508760 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT509091 SYNPO2L synaptopodin 2 like 2 4
MIRT511968 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT515210 CRCP CGRP receptor component 2 2
MIRT516377 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT517047 ZNF678 zinc finger protein 678 2 2
MIRT521125 SHROOM4 shroom family member 4 2 2
MIRT521277 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component 2 2
MIRT522772 LAMP2 lysosomal associated membrane protein 2 2 6
MIRT524419 CNKSR3 CNKSR family member 3 2 2
MIRT529398 ICK intestinal cell kinase 2 2
MIRT529965 PHF7 PHD finger protein 7 2 2
MIRT530189 TIGD2 tigger transposable element derived 2 2 2
MIRT533716 TMEM30A transmembrane protein 30A 2 2
MIRT543170 FICD FIC domain containing 2 2
MIRT548496 E2F8 E2F transcription factor 8 2 2
MIRT555020 RAB23 RAB23, member RAS oncogene family 2 2
MIRT560728 ZNF529 zinc finger protein 529 2 10
MIRT564890 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT567327 HMGB1 high mobility group box 1 2 2
MIRT568035 CLIP4 CAP-Gly domain containing linker protein family member 4 2 2
MIRT574763 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT620811 SLC26A2 solute carrier family 26 member 2 2 2
MIRT622456 RNF19B ring finger protein 19B 2 2
MIRT636240 SIM1 single-minded family bHLH transcription factor 1 2 2
MIRT643231 MUC15 mucin 15, cell surface associated 2 2
MIRT646319 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT646674 CCDC69 coiled-coil domain containing 69 2 2
MIRT650043 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT652533 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT663022 CD40LG CD40 ligand 2 2
MIRT667465 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT668620 EEA1 early endosome antigen 1 2 2
MIRT675678 SLC35F5 solute carrier family 35 member F5 2 2
MIRT681814 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT682674 CPM carboxypeptidase M 2 2
MIRT701447 NFIC nuclear factor I C 2 2
MIRT706222 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT707510 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT710466 ASTN2 astrotactin 2 2 2
MIRT712957 SGCD sarcoglycan delta 2 2
MIRT723030 MYLIP myosin regulatory light chain interacting protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3152-3p 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3152-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-3152-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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