pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol CEP104   
Synonyms CFAP256, GlyBP, JBTS25, KIAA0562, ROC22
Description centrosomal protein 104
Transcript NM_014704   
Expression
Putative miRNA Targets on CEP104
3'UTR of CEP104
(miRNA target sites are highlighted)
>CEP104|NM_014704|3'UTR
   1 CGCGGCGCTCGGGCTCCTTGGTCTCTGTGAGGGATGGAGCGGGTCTCCTGATTCTACACCATCTCTCCAGAACTCTCTGG
  81 CCTTGGTGGCCCCATGCTCTGGCTGCTGTCCCCAGCTCCCCGCCGTGCACGCCTCTTACGCGTCTGTGCCGTCAGCTCTC
 161 GTGCAAACGATATGGATGCAGCTAACCAAAGATCCTGCGTGCAGTGCCAGGACCTGGCCGCACTGTACATTAAGCCTTCA
 241 GGGCTGTCTCAGGCCTTCCTTAGAATCAGAGAAGGAAGCGTCCTGTTTGGAGAGAGCCAGAGAGCACCGCCGGGAGGCGC
 321 TCGCGCAAGGCCACGGTCAGCACAGGCACGGTCCCGCTTTCCTTAGTGCTTGGAGCAATTTCCATAAAACATTCACCAGA
 401 AACCTTTTGCACATCGGTCTCTGCCACACGCAGTAGAATTTCCGCAGGGCTGTGGCTCGGCCAGCAGCGGTTCCAGGAGA
 481 GTGGCGGTGCGCACGGGCCTCCAGCCGTGCCTTCCCCCTGCAGGCCCCGTCTGCTGGGCCTGCTGCCCAGTGCACTCAGC
 561 CCCAGGTAGCAGAACTCACGTTCCCACTATAGCAAGAAATAAAGGCAAAAGAGAACATCTTTTTTTTAATCGTAGTTTTT
 641 TTGAGAATTGGTCCCACCTCAGCCGCACCTTGCTGGATGCTTCTCCAGTAGTGCTGCCCCTGTGACAGGCATCAGCTCCC
 721 TGCTGGAACTGAGGTAGACACAGGTGTGGGCCCTTCCCGTGCCTTTGCTCAGAGGCGCTTCACTTTCTCCACACTTTCGA
 801 ATTCCTAAAGACATGTGGAGGAAGTCACTGTTAAATGAATTTCCACCTGATCACCCTGTGTTCACAGCAGGCAGAAGCCC
 881 ACTGGTATGGGCCTCCCGCCCCTTCCACATCCATGTTGTGATTGGATCCATAAGTTTACTTTCTTCAAAGAGTTGATAGG
 961 ATGTTTAAAACATCAACACATTGCTTAAAATGATGAAACCAACCCTCAAAAAACAGTCTCCTAACCAGCCATCCCCTCCT
1041 GTGGGAGTGAGCTGGGGGTTTTGTCCATAGCTTTGGTTGGGCCTGTGTCACATCCAGGCAGCCATGTGGAGGGAGTCAGG
1121 GTCTGTCTGGAAGCATCCACCCTCTCGCTGCCCCAGCCTGTGCTCCCAGGGGCCTAGGCTACCATGGACTGAAGGGCAGT
1201 CCCCTCCCACCTGGTGCCCAGGGCTTCTGCTTGCCTCGCTGATGTTGCATGGGCAGACTTCAAAAAGGATAGTTAGAAAG
1281 GTTTGGGTTGATGGAGTTTGCATTAATGCAATTAGTGTATAAATATGTTTTAATTGCCAACCGTGTGAAACAACAAAATA
1361 TCTAAAAACTAATCCCGATTTGAACAATGTACTCCCTGGCCTGGATACATTAATAACCATAAATTTGCATGAATTAATCT
1441 CCACGTTTGGTAAACTAATACCTCTGGTTGACTGAGAATACTGAGTAAGATATAAGACCTACCAGGAACCTTTAAGAATA
1521 TGCTCTGCTCAGTGTTGTTTGTCTGCTTGTTTGCGACGGAGTCTCACTGTGTCGCCCGGGCTGCAGTGCAATGGCGTGAT
1601 CTTGGCTCACAGTAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGTG
1681 CACACCACCATGCTCGGCTAATTTTTTCTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT
1761 CGTGACCTCATAATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGGTTAAATGT
1841 GTTTATAAGGAGAGAGGAGGCCAGGCGCGGTGGCTCACGCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGACCA
1921 CCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATGAGCCAGGC
2001 GTGGTGGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAAAATTGCTTGAACCCGGGAGGTGGAGGTTGCATTGAG
2081 CCCACATCATGCCATTGCACTCCAGCCCAGGCGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAAAGTATAAGGAGAGA
2161 AATAACTTTAAAGTTTATTAGACAAAACAGAGTATAGATGCCAAGATGTCTGTAAAATGATTTTTTCTGGTTTTAAAGAG
2241 ATGTTGGCCATTATTTTCTAATCCATTTTTAAAATACAGACAAAACACTTCTTTAAACAGAACAAGAATGAGAAAAGTTA
2321 ACCAAGGAATTATTCTTTTCTCACCAATCAACACTTTTAAGAAATATATATATATATATACACACATATACACATGCCTT
2401 CTATATATTGTAACTTAAAGAAAATACTTATAAAAAGACTTCATTTTTAGTGATTGACAAGCAAACGGGTTCATTTAAAA
2481 CAGGTTCCTCTTTTGTTAGTTACAGGGGGTTTTTTTGTTGTTTTTTTGTTTTTGTTTTTGTTTTGCGGGGGTGGTGGGGT
2561 TTGAGACGGAGTCTTGCTCTGTTGCCTAGGCTGGAGTGCAGTGGCGCGATCTTGGCCCCCTGCAACCTCCGCCTCCCGGG
2641 TTCGAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGTGTCACCACGCCTGGCTAATTTTTTTGT
2721 ATTTTTAGTAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTTGTGATCCACCCACCTCGGCC
2801 TCCCAAAGTGCTGGAATTACAGGCATGAGCCACCGCGCCCGGCCCAATCATGTGTTTTTGTTGAAATGATCCTACCAGTG
2881 ATTAGTGGCTATTGAGAGTTTTACAGGGTTATACATTGTTAAGGGACCAAGAATCAAGTACAAAAAATTAAAAAGGAACT
2961 GTAAAATCCCTTGGTCATTCATAAATAAATATCTAAATTAGGAATACTAATTAATTGAATTTTCACTCATGAGTATGTTC
3041 TGAATATTTAATATTTATTTCTATTATTTTCATATGTTAAGATATTCCATTAAATCTAACTTAAAAGAATTGTATGTATA
3121 AATTGGCATTAGGATACAAATGTAAATGTTTTTAATGAAATTTTGCAACTTTTTAATATTTTAACATAGTTTTCTATTTG
3201 TCTTTATTTCAAGTACCAGAATTACAAAATATCTAAGTAATATATTTTTGTTGTCGTTTTAGGGCTTAAGGGTTAATTCA
3281 CCCAGAGTATATTAATATAATAAAAAGATCACTAAATGTTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agaUUUAGA-GUAUCACGGAAGa 5'
             | || | || | ||||||| 
Target 5' cacACATATACACA-TGCCTTCt 3'
2381 - 2402 150.00 -10.50
2
miRNA  3' agauuuagaguauCACGGAAGa 5'
                       |||||||| 
Target 5' cgggcctccagccGTGCCTTCc 3'
494 - 515 145.00 -13.50
3
miRNA  3' agauuuaGAGUAUCACGGAAGa 5'
                 ||:   |||||||: 
Target 5' gtgggccCTTCCCGTGCCTTTg 3'
746 - 767 131.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1181337 312 ClinVar
COSN30131951 6 COSMIC
COSN24297751 25 COSMIC
COSN30120056 40 COSMIC
COSN20040207 106 COSMIC
COSN22144091 118 COSMIC
COSN31545489 122 COSMIC
COSN30175298 130 COSMIC
COSN31563407 141 COSMIC
COSN30742406 142 COSMIC
COSN19659331 146 COSMIC
COSN28647475 168 COSMIC
COSN31490528 197 COSMIC
COSN26677630 207 COSMIC
COSN20094200 311 COSMIC
COSN31960159 335 COSMIC
COSN20074045 345 COSMIC
COSN32119907 394 COSMIC
COSN16739171 540 COSMIC
COSN2459464 1431 COSMIC
COSN27869864 1816 COSMIC
COSN20094199 2133 COSMIC
COSN20094197 2134 COSMIC
COSN24325257 2147 COSMIC
COSN8468268 2191 COSMIC
COSN20806244 2258 COSMIC
COSN23177565 2364 COSMIC
COSN18723881 2377 COSMIC
COSN20094196 2495 COSMIC
COSN7218539 2620 COSMIC
COSN26098173 3049 COSMIC
COSN25772350 3066 COSMIC
COSN19410621 3116 COSMIC
COSN24833100 3245 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs12728401 1 dbSNP
rs929896052 2 dbSNP
rs770996627 3 dbSNP
rs374365915 4 dbSNP
rs1200556655 5 dbSNP
rs773195110 6 dbSNP
rs12729542 7 dbSNP
rs376014386 10 dbSNP
rs768166299 11 dbSNP
rs916658169 12 dbSNP
rs748830711 13 dbSNP
rs780476689 14 dbSNP
rs371734853 16 dbSNP
rs746218491 17 dbSNP
rs1443862253 18 dbSNP
rs1271195289 20 dbSNP
rs1398926332 21 dbSNP
rs367595724 27 dbSNP
rs1053604661 28 dbSNP
rs1459361091 29 dbSNP
rs1366688640 30 dbSNP
rs757390694 31 dbSNP
rs1419480342 32 dbSNP
rs751858907 33 dbSNP
rs1180752636 34 dbSNP
rs1456665502 35 dbSNP
rs764252937 38 dbSNP
rs779443196 40 dbSNP
rs200173861 41 dbSNP
rs1264232229 43 dbSNP
rs766405628 47 dbSNP
rs1354881435 50 dbSNP
rs1455007999 54 dbSNP
rs981059088 65 dbSNP
rs1304388224 67 dbSNP
rs1386861504 70 dbSNP
rs978337067 74 dbSNP
rs967349015 75 dbSNP
rs992946703 79 dbSNP
rs1030605065 85 dbSNP
rs754342571 90 dbSNP
rs1431750161 94 dbSNP
rs1200165282 100 dbSNP
rs1446505775 104 dbSNP
rs1260255208 106 dbSNP
rs778322536 112 dbSNP
rs900872514 115 dbSNP
rs867619101 121 dbSNP
rs1018002551 122 dbSNP
rs1006646913 124 dbSNP
rs1484022565 125 dbSNP
rs888262256 130 dbSNP
rs1048690860 131 dbSNP
rs1325409500 133 dbSNP
rs1210022146 136 dbSNP
rs1383896887 139 dbSNP
rs890146163 139 dbSNP
rs929850398 140 dbSNP
rs897062531 142 dbSNP
rs1046332909 146 dbSNP
rs892213543 149 dbSNP
rs1236516285 150 dbSNP
rs1371455049 151 dbSNP
rs1053660015 155 dbSNP
rs1429583525 158 dbSNP
rs936493949 160 dbSNP
rs904992516 161 dbSNP
rs530172111 163 dbSNP
rs142026108 168 dbSNP
rs1045004741 169 dbSNP
rs1338147721 170 dbSNP
rs949305915 172 dbSNP
rs1392598066 173 dbSNP
rs917282922 180 dbSNP
rs1365767977 181 dbSNP
rs1342167883 190 dbSNP
rs1314300743 191 dbSNP
rs916584744 195 dbSNP
rs990842947 198 dbSNP
rs936769479 199 dbSNP
rs759178611 206 dbSNP
rs1409648878 211 dbSNP
rs1394641731 216 dbSNP
rs925416967 218 dbSNP
rs978646060 219 dbSNP
rs753093605 220 dbSNP
rs1182357712 221 dbSNP
rs963525521 222 dbSNP
rs1030992136 224 dbSNP
rs1181585659 227 dbSNP
rs1436818659 228 dbSNP
rs1270463238 234 dbSNP
rs1364575783 235 dbSNP
rs1342343097 248 dbSNP
rs548399542 255 dbSNP
rs1161423734 263 dbSNP
rs1243744948 265 dbSNP
rs1361291756 270 dbSNP
rs372500276 271 dbSNP
rs1441232645 277 dbSNP
rs531659589 279 dbSNP
rs1331133500 280 dbSNP
rs986422188 285 dbSNP
rs955116838 290 dbSNP
rs1030032613 307 dbSNP
rs976337989 308 dbSNP
rs34060840 309 dbSNP
rs71753525 311 dbSNP
rs113041467 312 dbSNP
rs3838969 312 dbSNP
rs1006590667 318 dbSNP
rs532032285 319 dbSNP
rs1483083836 320 dbSNP
rs1026775846 322 dbSNP
rs561904254 323 dbSNP
rs759772569 324 dbSNP
rs560045882 325 dbSNP
rs1290519758 329 dbSNP
rs1222922940 330 dbSNP
rs1281473383 331 dbSNP
rs539948583 334 dbSNP
rs751789229 335 dbSNP
rs548461054 336 dbSNP
rs1292066868 347 dbSNP
rs3795255 349 dbSNP
rs1046261355 350 dbSNP
rs1013477729 355 dbSNP
rs1410683618 356 dbSNP
rs895123708 356 dbSNP
rs1160884619 371 dbSNP
rs1055034076 375 dbSNP
rs1472691059 376 dbSNP
rs1316748257 378 dbSNP
rs936706648 384 dbSNP
rs554791046 385 dbSNP
rs544378753 387 dbSNP
rs945501484 389 dbSNP
rs575928187 391 dbSNP
rs1417327150 402 dbSNP
rs1323030627 407 dbSNP
rs1281619038 410 dbSNP
rs763054096 415 dbSNP
rs1368473652 416 dbSNP
rs976308329 417 dbSNP
rs964971410 421 dbSNP
rs1037767628 428 dbSNP
rs1321582935 429 dbSNP
rs910830847 430 dbSNP
rs1475521747 432 dbSNP
rs772912976 433 dbSNP
rs1404812750 437 dbSNP
rs559005692 439 dbSNP
rs1434380604 440 dbSNP
rs773070752 443 dbSNP
rs138021336 444 dbSNP
rs993935960 449 dbSNP
rs776572186 451 dbSNP
rs1024779704 458 dbSNP
rs1261483827 459 dbSNP
rs867945506 464 dbSNP
rs566757158 469 dbSNP
rs1021735938 471 dbSNP
rs1312816327 477 dbSNP
rs1411560071 482 dbSNP
rs895046524 484 dbSNP
rs1000643510 485 dbSNP
rs553364855 486 dbSNP
rs536787227 488 dbSNP
rs1381112684 490 dbSNP
rs969534412 491 dbSNP
rs1001264774 494 dbSNP
rs903860861 495 dbSNP
rs1013838535 497 dbSNP
rs892338878 500 dbSNP
rs1042826395 505 dbSNP
rs945499278 506 dbSNP
rs573818289 507 dbSNP
rs1046978392 512 dbSNP
rs1183411338 517 dbSNP
rs1483672264 519 dbSNP
rs994020327 521 dbSNP
rs1322964703 524 dbSNP
rs1344486967 528 dbSNP
rs923405725 529 dbSNP
rs567738491 536 dbSNP
rs1357699653 544 dbSNP
rs548436273 555 dbSNP
rs1396989816 568 dbSNP
rs1379362806 575 dbSNP
rs1297322929 577 dbSNP
rs943556998 579 dbSNP
rs537656972 580 dbSNP
rs1050495165 607 dbSNP
rs1169111106 619 dbSNP
rs910799805 624 dbSNP
rs1383328225 628 dbSNP
rs146971214 632 dbSNP
rs140343729 633 dbSNP
rs768512996 637 dbSNP
rs1373504455 643 dbSNP
rs956926387 650 dbSNP
rs1252675747 653 dbSNP
rs1221875117 656 dbSNP
rs972868605 664 dbSNP
rs1190260536 665 dbSNP
rs961143820 675 dbSNP
rs1267765443 685 dbSNP
rs532394000 691 dbSNP
rs1316757731 697 dbSNP
rs1305824945 702 dbSNP
rs924972268 704 dbSNP
rs1351983861 708 dbSNP
rs1308060775 734 dbSNP
rs1403814470 737 dbSNP
rs1388403129 739 dbSNP
rs773978337 743 dbSNP
rs187171124 745 dbSNP
rs1458204451 747 dbSNP
rs1213888401 749 dbSNP
rs1452857127 751 dbSNP
rs746707344 756 dbSNP
rs775179146 758 dbSNP
rs555321293 759 dbSNP
rs1473671181 762 dbSNP
rs903828245 768 dbSNP
rs1412994196 772 dbSNP
rs183222602 776 dbSNP
rs1479537982 777 dbSNP
rs1270084025 796 dbSNP
rs1020966763 797 dbSNP
rs1485729220 798 dbSNP
rs1259291754 799 dbSNP
rs1210998786 802 dbSNP
rs969040686 806 dbSNP
rs1010011868 813 dbSNP
rs1023811329 815 dbSNP
rs901925642 815 dbSNP
rs1232508886 838 dbSNP
rs1303283802 852 dbSNP
rs529767482 855 dbSNP
rs1384199980 860 dbSNP
rs960840705 864 dbSNP
rs1458623504 866 dbSNP
rs1389656366 868 dbSNP
rs1025413565 877 dbSNP
rs192445238 878 dbSNP
rs1464590455 880 dbSNP
rs187727965 882 dbSNP
rs994074047 885 dbSNP
rs537083190 887 dbSNP
rs1428392079 894 dbSNP
rs1260275016 896 dbSNP
rs575774226 897 dbSNP
rs943484782 898 dbSNP
rs1268355087 900 dbSNP
rs1202689067 901 dbSNP
rs771533248 918 dbSNP
rs1371067768 926 dbSNP
rs1049756147 937 dbSNP
rs3795256 946 dbSNP
rs1295405064 954 dbSNP
rs1432666484 955 dbSNP
rs1050957901 957 dbSNP
rs902038413 959 dbSNP
rs1404649968 961 dbSNP
rs1173177998 962 dbSNP
rs1052594414 966 dbSNP
rs1388850930 971 dbSNP
rs935606049 972 dbSNP
rs1450454673 973 dbSNP
rs183914312 979 dbSNP
rs1180437571 980 dbSNP
rs972410894 987 dbSNP
rs778356521 995 dbSNP
rs947723009 1001 dbSNP
rs1257845124 1003 dbSNP
rs1200531620 1007 dbSNP
rs756621801 1009 dbSNP
rs917656290 1011 dbSNP
rs991876253 1022 dbSNP
rs1272366689 1028 dbSNP
rs992341415 1029 dbSNP
rs192092153 1034 dbSNP
rs1314048640 1035 dbSNP
rs960474279 1035 dbSNP
rs1445561823 1053 dbSNP
rs1342418298 1054 dbSNP
rs542539800 1056 dbSNP
rs1368841386 1064 dbSNP
rs778035683 1064 dbSNP
rs962480739 1065 dbSNP
rs1281403522 1066 dbSNP
rs1016814675 1067 dbSNP
rs1006781645 1088 dbSNP
rs1033535054 1095 dbSNP
rs1474017765 1096 dbSNP
rs1369826195 1102 dbSNP
rs1187877379 1103 dbSNP
rs1028978211 1104 dbSNP
rs1206714324 1109 dbSNP
rs1483310556 1111 dbSNP
rs536629259 1113 dbSNP
rs1226393644 1119 dbSNP
rs1279092995 1120 dbSNP
rs1284975863 1130 dbSNP
rs1442983490 1138 dbSNP
rs1348897653 1143 dbSNP
rs901922499 1146 dbSNP
rs777010196 1147 dbSNP
rs967978531 1152 dbSNP
rs1365505244 1156 dbSNP
rs1021329237 1157 dbSNP
rs1407413604 1162 dbSNP
rs1052478044 1171 dbSNP
rs935491616 1172 dbSNP
rs1009563042 1180 dbSNP
rs768884382 1184 dbSNP
rs1019002176 1189 dbSNP
rs948310496 1193 dbSNP
rs142237104 1202 dbSNP
rs1246040461 1206 dbSNP
rs1405306307 1209 dbSNP
rs1219339876 1224 dbSNP
rs11805724 1237 dbSNP
rs537506381 1238 dbSNP
rs568964971 1246 dbSNP
rs1327268232 1248 dbSNP
rs1049217348 1253 dbSNP
rs1290447002 1255 dbSNP
rs1229071724 1257 dbSNP
rs1253270729 1267 dbSNP
rs552338461 1272 dbSNP
rs1273552629 1276 dbSNP
rs930833167 1302 dbSNP
rs939143687 1311 dbSNP
rs1332204483 1316 dbSNP
rs748599807 1317 dbSNP
rs1385992934 1320 dbSNP
rs1037053509 1324 dbSNP
rs1485626706 1325 dbSNP
rs1258722591 1331 dbSNP
rs1188978400 1332 dbSNP
rs145692363 1337 dbSNP
rs918338741 1342 dbSNP
rs1247230480 1343 dbSNP
rs1187618998 1345 dbSNP
rs939653178 1347 dbSNP
rs1212663860 1359 dbSNP
rs1315399234 1360 dbSNP
rs1463425682 1362 dbSNP
rs12035584 1369 dbSNP
rs1270226679 1370 dbSNP
rs1209641414 1373 dbSNP
rs1311860425 1374 dbSNP
rs1283868106 1376 dbSNP
rs962532069 1377 dbSNP
rs781598605 1381 dbSNP
rs367897319 1386 dbSNP
rs1224497235 1387 dbSNP
rs1433327555 1388 dbSNP
rs755327892 1389 dbSNP
rs187875011 1411 dbSNP
rs1331337940 1416 dbSNP
rs991845237 1427 dbSNP
rs1016745171 1433 dbSNP
rs937775163 1444 dbSNP
rs1415684771 1445 dbSNP
rs1412931785 1448 dbSNP
rs1425777297 1461 dbSNP
rs1354715581 1463 dbSNP
rs546224507 1465 dbSNP
rs75958381 1468 dbSNP
rs1188999211 1475 dbSNP
rs34001537 1477 dbSNP
rs979270104 1481 dbSNP
rs1235954108 1485 dbSNP
rs1212334823 1489 dbSNP
rs1312911032 1490 dbSNP
rs183173685 1492 dbSNP
rs1020836023 1493 dbSNP
rs1449989961 1495 dbSNP
rs988060283 1498 dbSNP
rs1228123049 1502 dbSNP
rs1377905973 1511 dbSNP
rs6695834 1531 dbSNP
rs965998777 1532 dbSNP
rs1031103983 1539 dbSNP
rs1306906935 1543 dbSNP
rs143602814 1549 dbSNP
rs999585199 1553 dbSNP
rs758497416 1554 dbSNP
rs1162151202 1555 dbSNP
rs780137750 1557 dbSNP
rs953426847 1558 dbSNP
rs530589444 1569 dbSNP
rs1012947265 1570 dbSNP
rs1028196427 1573 dbSNP
rs995006203 1574 dbSNP
rs1221286245 1576 dbSNP
rs371540847 1577 dbSNP
rs1036575412 1578 dbSNP
rs1355721753 1582 dbSNP
rs190570178 1583 dbSNP
rs918224343 1586 dbSNP
rs1308622824 1587 dbSNP
rs896126618 1588 dbSNP
rs1056044006 1589 dbSNP
rs937701771 1595 dbSNP
rs926384761 1596 dbSNP
rs1043875086 1598 dbSNP
rs946532770 1605 dbSNP
rs1313372206 1611 dbSNP
rs1180019364 1613 dbSNP
rs913744783 1616 dbSNP
rs1253147467 1617 dbSNP
rs1209818992 1619 dbSNP
rs941097312 1623 dbSNP
rs1267555637 1624 dbSNP
rs1222790452 1627 dbSNP
rs867829307 1629 dbSNP
rs909738147 1632 dbSNP
rs1267180753 1642 dbSNP
rs965940449 1645 dbSNP
rs1226029717 1647 dbSNP
rs1269370643 1668 dbSNP
rs1435429673 1670 dbSNP
rs1351856527 1675 dbSNP
rs559714199 1677 dbSNP
rs1475102812 1682 dbSNP
rs1307577655 1690 dbSNP
rs911837493 1691 dbSNP
rs1386103027 1692 dbSNP
rs185810338 1695 dbSNP
rs573611470 1696 dbSNP
rs1461772331 1699 dbSNP
rs953535267 1700 dbSNP
rs1157287534 1707 dbSNP
rs1349908415 1708 dbSNP
rs1412749016 1711 dbSNP
rs1198279590 1722 dbSNP
rs1167546859 1724 dbSNP
rs1270104610 1725 dbSNP
rs954141386 1727 dbSNP
rs1464777563 1733 dbSNP
rs1027703091 1735 dbSNP
rs1206482483 1736 dbSNP
rs922550552 1741 dbSNP
rs1260751427 1742 dbSNP
rs1231902137 1743 dbSNP
rs1419335750 1744 dbSNP
rs1303405520 1745 dbSNP
rs1441350094 1746 dbSNP
rs976635102 1748 dbSNP
rs1318748042 1755 dbSNP
rs966050768 1756 dbSNP
rs560101495 1761 dbSNP
rs962212048 1762 dbSNP
rs1015058313 1763 dbSNP
rs1488855651 1768 dbSNP
rs112926411 1772 dbSNP
rs896053186 1774 dbSNP
rs1177489567 1784 dbSNP
rs1449212602 1785 dbSNP
rs574085475 1793 dbSNP
rs1190931772 1794 dbSNP
rs1305676164 1797 dbSNP
rs999638915 1800 dbSNP
rs181177455 1809 dbSNP
rs557351364 1813 dbSNP
rs367621607 1814 dbSNP
rs190844332 1825 dbSNP
rs36097837 1826 dbSNP
rs538810843 1832 dbSNP
rs1327246634 1834 dbSNP
rs1294772828 1844 dbSNP
rs1333830900 1852 dbSNP
rs1460969624 1857 dbSNP
rs895421586 1859 dbSNP
rs1056621283 1865 dbSNP
rs185926556 1866 dbSNP
rs552873849 1867 dbSNP
rs1432041394 1868 dbSNP
rs1393593916 1869 dbSNP
rs1186461252 1876 dbSNP
rs1421509172 1878 dbSNP
rs1193246754 1879 dbSNP
rs1210997786 1880 dbSNP
rs896884817 1884 dbSNP
rs1036753558 1890 dbSNP
rs1269630982 1894 dbSNP
rs1283788920 1905 dbSNP
rs1175528935 1906 dbSNP
rs182145904 1910 dbSNP
rs549785710 1911 dbSNP
rs940994292 1912 dbSNP
rs1344061034 1914 dbSNP
rs1277846047 1915 dbSNP
rs189515362 1918 dbSNP
rs1410856520 1923 dbSNP
rs1390517093 1937 dbSNP
rs1312399191 1947 dbSNP
rs1302834042 1948 dbSNP
rs909550902 1949 dbSNP
rs865892222 1950 dbSNP
rs1309184292 1955 dbSNP
rs1049897684 1956 dbSNP
rs1412147617 1957 dbSNP
rs1374093123 1960 dbSNP
rs1173386682 1966 dbSNP
rs1466784634 1969 dbSNP
rs184678794 1985 dbSNP
rs368292661 2000 dbSNP
rs571303037 2001 dbSNP
rs1418606538 2004 dbSNP
rs1252560290 2009 dbSNP
rs1050309815 2010 dbSNP
rs1348759144 2014 dbSNP
rs551153106 2023 dbSNP
rs1443511342 2024 dbSNP
rs1483993321 2045 dbSNP
rs1255214313 2047 dbSNP
rs528716132 2058 dbSNP
rs577277237 2059 dbSNP
rs1483396549 2064 dbSNP
rs920612373 2066 dbSNP
rs1456222686 2076 dbSNP
rs543353180 2078 dbSNP
rs1159822437 2082 dbSNP
rs756006610 2086 dbSNP
rs1470436439 2092 dbSNP
rs1246056624 2096 dbSNP
rs1196473440 2098 dbSNP
rs1469694032 2100 dbSNP
rs1257417011 2105 dbSNP
rs1208387709 2106 dbSNP
rs1236360334 2111 dbSNP
rs181659069 2112 dbSNP
rs1344918865 2113 dbSNP
rs1288422399 2117 dbSNP
rs1439028194 2119 dbSNP
rs140052644 2120 dbSNP
rs1354086645 2121 dbSNP
rs1312690880 2125 dbSNP
rs1397002916 2127 dbSNP
rs978174338 2127 dbSNP
rs1404745523 2128 dbSNP
rs1287353783 2129 dbSNP
rs1453245878 2133 dbSNP
rs866676717 2134 dbSNP
rs375134656 2135 dbSNP
rs931657205 2135 dbSNP
rs1412883176 2136 dbSNP
rs968577050 2137 dbSNP
rs1216575132 2141 dbSNP
rs1014986364 2144 dbSNP
rs1441966790 2148 dbSNP
rs371142743 2148 dbSNP
rs566465862 2148 dbSNP
rs1022287028 2149 dbSNP
rs1243313977 2150 dbSNP
rs991256591 2159 dbSNP
rs959630908 2161 dbSNP
rs898815433 2163 dbSNP
rs1226650130 2170 dbSNP
rs79175490 2170 dbSNP
rs578063626 2189 dbSNP
rs1003636278 2193 dbSNP
rs1358111394 2195 dbSNP
rs960206356 2198 dbSNP
rs1034523880 2212 dbSNP
rs1376005282 2220 dbSNP
rs760496941 2221 dbSNP
rs1167723126 2227 dbSNP
rs1186703349 2235 dbSNP
rs1447494573 2242 dbSNP
rs1442801112 2248 dbSNP
rs775100219 2261 dbSNP
rs1203078673 2262 dbSNP
rs1464149193 2267 dbSNP
rs1268261935 2270 dbSNP
rs1005253760 2271 dbSNP
rs1444048629 2281 dbSNP
rs1486249186 2299 dbSNP
rs904826333 2304 dbSNP
rs1352578105 2311 dbSNP
rs1274630048 2314 dbSNP
rs1022364214 2315 dbSNP
rs750201777 2317 dbSNP
rs558247643 2323 dbSNP
rs78103829 2329 dbSNP
rs892215248 2336 dbSNP
rs1246097762 2338 dbSNP
rs901062352 2338 dbSNP
rs1416093808 2352 dbSNP
rs1040992056 2357 dbSNP
rs745447530 2367 dbSNP
rs1427549410 2368 dbSNP
rs572707191 2372 dbSNP
rs1170914007 2376 dbSNP
rs552712364 2377 dbSNP
rs7543169 2379 dbSNP
rs931906495 2380 dbSNP
rs750737174 2381 dbSNP
rs762715409 2381 dbSNP
rs769012968 2381 dbSNP
rs990812254 2382 dbSNP
rs959647982 2387 dbSNP
rs1252199388 2391 dbSNP
rs560064971 2391 dbSNP
rs1393755159 2392 dbSNP
rs982330776 2395 dbSNP
rs1355589389 2397 dbSNP
rs76759008 2399 dbSNP
rs1473082921 2400 dbSNP
rs1375464833 2403 dbSNP
rs1370034456 2411 dbSNP
rs1298470704 2417 dbSNP
rs1435587223 2431 dbSNP
rs1348342227 2436 dbSNP
rs1015704411 2439 dbSNP
rs537064074 2454 dbSNP
rs1006159586 2466 dbSNP
rs188865191 2467 dbSNP
rs907957898 2468 dbSNP
rs1251873349 2481 dbSNP
rs1190973318 2495 dbSNP
rs1487737957 2498 dbSNP
rs992875597 2499 dbSNP
rs200260349 2503 dbSNP
rs960173471 2508 dbSNP
rs184827235 2509 dbSNP
rs1335103152 2510 dbSNP
rs1266877499 2512 dbSNP
rs1236263360 2516 dbSNP
rs1231537862 2517 dbSNP
rs1318657284 2517 dbSNP
rs900842937 2520 dbSNP
rs980323923 2522 dbSNP
rs1211033936 2523 dbSNP
rs1327702942 2527 dbSNP
rs934556907 2528 dbSNP
rs1388195322 2540 dbSNP
rs1359066017 2545 dbSNP
rs559083271 2545 dbSNP
rs903130121 2547 dbSNP
rs528152590 2549 dbSNP
rs969356673 2550 dbSNP
rs1194670580 2551 dbSNP
rs947225692 2555 dbSNP
rs755344778 2557 dbSNP
rs915299418 2563 dbSNP
rs566317699 2567 dbSNP
rs1261203544 2568 dbSNP
rs1232388012 2577 dbSNP
rs991318676 2579 dbSNP
rs1324267367 2581 dbSNP
rs892141639 2589 dbSNP
rs1030720379 2590 dbSNP
rs868120763 2598 dbSNP
rs749383429 2599 dbSNP
rs549594711 2600 dbSNP
rs1008671912 2605 dbSNP
rs890266982 2606 dbSNP
rs1166045138 2607 dbSNP
rs1050673737 2608 dbSNP
rs927963566 2609 dbSNP
rs1190624695 2611 dbSNP
rs1429958850 2613 dbSNP
rs1261750031 2619 dbSNP
rs1199399372 2621 dbSNP
rs529641624 2627 dbSNP
rs982110276 2629 dbSNP
rs899075781 2630 dbSNP
rs192827856 2631 dbSNP
rs1249436304 2637 dbSNP
rs1037659182 2638 dbSNP
rs1327263769 2638 dbSNP
rs940648464 2639 dbSNP
rs1413085752 2640 dbSNP
rs1357908132 2643 dbSNP
rs907898801 2644 dbSNP
rs1394728491 2648 dbSNP
rs1429473901 2648 dbSNP
rs1245686794 2649 dbSNP
rs1170028259 2654 dbSNP
rs1198928169 2656 dbSNP
rs1057114436 2658 dbSNP
rs908820427 2667 dbSNP
rs1186599974 2669 dbSNP
rs938754653 2670 dbSNP
rs984279311 2672 dbSNP
rs927404292 2679 dbSNP
rs1249076787 2680 dbSNP
rs1028035665 2681 dbSNP
rs1340315203 2687 dbSNP
rs187597334 2689 dbSNP
rs1343324291 2690 dbSNP
rs1337089122 2691 dbSNP
rs1294021204 2692 dbSNP
rs1409703685 2695 dbSNP
rs1334526874 2701 dbSNP
rs1331219660 2702 dbSNP
rs1392403718 2718 dbSNP
rs965159004 2719 dbSNP
rs1232441909 2727 dbSNP
rs1419326649 2731 dbSNP
rs543725806 2735 dbSNP
rs533384929 2736 dbSNP
rs1183702123 2738 dbSNP
rs1438229793 2746 dbSNP
rs1275553213 2747 dbSNP
rs1252572900 2751 dbSNP
rs989082238 2758 dbSNP
rs1334004284 2760 dbSNP
rs956339223 2762 dbSNP
rs1306119149 2766 dbSNP
rs1273831502 2775 dbSNP
rs1227869413 2778 dbSNP
rs1349158802 2788 dbSNP
rs184662317 2790 dbSNP
rs1240181806 2794 dbSNP
rs7528951 2797 dbSNP
rs894301439 2798 dbSNP
rs572199848 2803 dbSNP
rs1399670491 2805 dbSNP
rs1028783321 2820 dbSNP
rs41307041 2822 dbSNP
rs765470803 2824 dbSNP
rs1046360718 2825 dbSNP
rs2797433 2829 dbSNP
rs1394203391 2833 dbSNP
rs188024561 2834 dbSNP
rs899005907 2835 dbSNP
rs1253941570 2836 dbSNP
rs558141303 2837 dbSNP
rs1004769230 2840 dbSNP
rs546146306 2841 dbSNP
rs908766500 2844 dbSNP
rs1206186917 2851 dbSNP
rs1057041286 2854 dbSNP
rs938722095 2855 dbSNP
rs927360537 2873 dbSNP
rs1237045748 2883 dbSNP
rs1372705497 2884 dbSNP
rs1044491683 2895 dbSNP
rs947500242 2905 dbSNP
rs1442159731 2909 dbSNP
rs914767643 2912 dbSNP
rs1319747131 2915 dbSNP
rs1279626751 2940 dbSNP
rs573718172 2941 dbSNP
rs965105924 2948 dbSNP
rs78028957 2962 dbSNP
rs1287806342 2969 dbSNP
rs1227776864 2977 dbSNP
rs1455469170 2980 dbSNP
rs761439175 2981 dbSNP
rs1395898471 2993 dbSNP
rs1801816 2995 dbSNP
rs1186189511 2997 dbSNP
rs1474568036 3002 dbSNP
rs536899342 3015 dbSNP
rs1309665796 3017 dbSNP
rs998492606 3026 dbSNP
rs1193996231 3035 dbSNP
rs1445581573 3039 dbSNP
rs967042529 3040 dbSNP
rs1334418031 3050 dbSNP
rs1278882349 3051 dbSNP
rs1415816228 3051 dbSNP
rs956265203 3057 dbSNP
rs1213436202 3061 dbSNP
rs912844180 3072 dbSNP
rs1272776062 3074 dbSNP
rs1213571541 3080 dbSNP
rs987132976 3085 dbSNP
rs954395058 3094 dbSNP
rs1157744694 3096 dbSNP
rs1359451475 3101 dbSNP
rs1271366705 3112 dbSNP
rs1473227559 3114 dbSNP
rs1430917704 3116 dbSNP
rs1414873395 3124 dbSNP
rs1029125902 3131 dbSNP
rs1011903439 3132 dbSNP
rs1311046074 3133 dbSNP
rs1436321927 3141 dbSNP
rs767819908 3154 dbSNP
rs894423817 3154 dbSNP
rs183298780 3163 dbSNP
rs1422000346 3166 dbSNP
rs995958268 3168 dbSNP
rs1056018976 3170 dbSNP
rs1212597625 3182 dbSNP
rs1255984150 3197 dbSNP
rs1445485138 3201 dbSNP
rs963514432 3202 dbSNP
rs1002681725 3203 dbSNP
rs1232611253 3214 dbSNP
rs60142135 3219 dbSNP
rs1046474511 3220 dbSNP
rs1004695429 3221 dbSNP
rs1218690501 3226 dbSNP
rs908536297 3229 dbSNP
rs1048426352 3236 dbSNP
rs1356016145 3241 dbSNP
rs534757214 3254 dbSNP
rs1439823203 3255 dbSNP
rs921553323 3255 dbSNP
rs1057008781 3256 dbSNP
rs1378179503 3261 dbSNP
rs1284553555 3262 dbSNP
rs1449837157 3267 dbSNP
rs1385950058 3268 dbSNP
rs975963140 3277 dbSNP
rs1475784438 3283 dbSNP
rs1319423594 3291 dbSNP
rs1407984422 3301 dbSNP
rs944200336 3308 dbSNP
rs1457328396 3313 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9731.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9731.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000378230.3 | 3UTR | AUAUAUAUAUAUAUAUACACACAUAUACACAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000378230.3 | 3UTR | AAUAUAUAUAUAUAUAUACACACAUAUACACAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

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