miRTarBase - #MIRT516610


—
pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRIM58   
Synonyms BIA2
Description tripartite motif containing 58
Transcript NM_015431   
Expression
Putative miRNA Targets on TRIM58
3'UTR of TRIM58
(miRNA target sites are highlighted)		 
>TRIM58|NM_015431|3'UTR
   1 AATTCTGTTCCCAAGATGCAGTCCTAGCGTAGCGAACGTTCCTGGAGTGGGGTGAAGGATATCAATATACTAAGTTTTAA
  81 CAGATACCCCATTTAGGTCAGCACTTGATTCGTTGTTGCTGTGAAATATGTCCATGGGACAAAAGAGGGAATATGAAATA
 161 TTTGCATATGGGAAGATTATAGAGCATAATAATTTTGTAAATGGAGCAATCTCAACCTCTATTTCTAGATCACATTTTCT
 241 TGATGTCTTCCTTCAAATTAATGACCTTGGATTACATAAGGATTTCTATGCATTCATTATAATTTGTTATTCCTTTCAAT
 321 ATCCTTGTATTTCAAATCTTCCATATAAGAATTAGACATGGCAATTCTTAAATTGATTCAGAATGGTCTGATACTATTCC
 401 AGTATCACCTCCTTAATTCTGTTTCTCCTCGTTTTCCTGATTTTCCTTCTCATTCTCTCCTTCCCCGCTCTGTCTCTCTC
 481 TCCCTGTCACTCTCTCTCTCTTGTTCCTTATTTTTTGTTTCTTACCTCTTACTGTTTAACCTGTTGCTTCCTTCTGGATT
 561 AATACATTTAGAGCCATTCCTTTATATGGTCACATTTCCTATGACTTTACTCAATTACTTTTAAAATCCTTTCTATTCTG
 641 AGACTAATTTTTAAGAATTACAAAGCTCATTCTTCTGAATCTAATATCACTAACTCCTAGACTTTTTCCGTTTTCTTTGG
 721 ATACACTTTAAGTAGGAATTTATCAGAATTTTCATTCAACTCGTTCTTTAATGCAGATATTTACTAGTTATAAGACCTTA
 801 AGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGCTCAGGAGTTCA
 881 AGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAAAAAATAGAAAAATTAGCTGGGCATGGTGG
 961 CAGGAGCCTGTAATCCCAGCTATTCTGGAGGTGGAGACAGGAGAATTGCTTGAACCCTGGAGGCGGAGGTTGCAGTGAGC
1041 CAATATCTCACCACTGTACTCCAGCCCAGTGCGAGACTCCATCTCAAAAAAGAAAAAAGACCTCAAACAACACTTCTCTC
1121 TCTCTTTTAGCTGCTTGTTATGGTTCCTATACATGGAACAATTATACTGGCCTCACTGTGTTATGGTAAATATTTAAGGT
1201 CATATTTGATATTGCTGGTTTGAATTCAGCTTTTCCATTTAAATACATTATAATGATGATGATGAAATCATGATAATATT
1281 TAACTTATTTTTAAAGTATATTCTGTACCTTTCCAACAAAAAGGTTAAAAGTCATTGAAGGCTAACCTTACTGCCTTCTT
1361 TGTATCACTGTCTTCTAAATAATTATTATGTCTGGGTACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG
1441 GTGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAA
1521 GAAATTAGCTGGGCGTGGTGGTGGGTGCCTGTTGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAG
1601 GAGGCAGAGCTTGTAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCGGGGCAACAGAGCAAGACTCCATCTCAAAAATA
1681 AATAAATAAATAAATAAATAAATAAATAAATAAATAAATATTACACAAATGCTAAAATGTTTAAATGGTAAATGCTTCAA
1761 TGCTAACCAAATATTAATTAATGGCAAATTATTTAACATTATCTGATAATAATCTGCAGAAGGTTTAATTTTCCTCCTCA
1841 ATTTGAAGTTCAAGATGTTTTTCTCTTCCAGGGAGATTTTTTCGACTGACATCTTTAACTTACCTTCCAATCATATTACT
1921 AACGTAGCCTTCTTCCTAGATTTTTTAATTGTTTGATCATGAGCGAACACTTCTACTCTCTGTGATAGATTTGCAAACAG
2001 AGGAAATAACGCATCCTCGTGTCCCTCTTCTTGGTGTTCCACAGGCCATGTGTGCCCTAGCCCTCGTTCATGCAAGGTCT
2081 GTGTAGGGAAGGTGGACTTCAGCTCAGCAACAGCATCCCTTCCCACAGGGATCAGGTGGGTGGCTTGAGATACCCCTTCC
2161 ATGGGGCACCACCCATTCAGTGAGACGGGGAAGCCCTGGGTGGGAGGGAGAACACCTCCACATGTCTTCTACTCTCTCCA
2241 TAGGATGGAATGAGTGTCCCAGTCCCAGGAGTATCCATTTCCCACTGTGTAGCCCAGTACTCTGGTCTCACTGTCTCTGC
2321 TGAATCCTGTCTCACTGTGCATATTATTGTGGTTTATATCAGTCAGTAAACCAATGTGAGTCTTCATCTCTTGCATTCTT
2401 AGGTTCATAGTTTTGTGTGTCTCCTGTAATGACTCTTCTCTTTCCCTTTCCAACTCCTGAAAGATTGCCACTATTTCCTC
2481 TGGAACTTTGTTTCGTTACCAGCAAAATCCTCGACATCCATACCCGTTTCCTGGCTTTCCCTCTCCTTTCCTCTGAATGG
2561 TAGTCTTTTATATTCAGCTGTCCACTTGACATCAAAATAGACATTTTGAACTCAATTTGCCTAAAACTTACCCACAAATT
2641 TCTCCCCAAGTCTCTCCCTAACTGCAACAACAAAAACCACAGGCTTCTCCCTGTCACTGGATGGCAACTCCATTCTTTTG
2721 ATTGCTTAAGCCAGGCATCCGATTGAGTACTTTCTTGATTTCTCCAGCCCACATCCAGTCCATCGGCAAGCCCTGTTGGT
2801 CCTACCTTCAGAATATGTCCGGGGTTCAGTTGTCCTGGCCACCCTGCTGCTGTAACCATGGTCAGAACTCCATCCTGCCC
2881 CTCTGGATTATGACTTTCGTTTCCTCACAGTGGTCCTGCTTGGGCTCTAGGCCCTTCCACTCCCATTCTCTCTACAGCAG
2961 CTGGGCTGATTCCTTTAGCACCCAAGGATATGTTGGCATCACAGTGACTTAGATACCATCACAAAGACCTCCCATTCAAC
3041 TTAGAGTGAAAGTCAGAATCCTCACAGTGAATCCCCAGGCCCTAGAGGATGTGAACCCCCAGGCCCTAGAGGATCTGAAC
3121 CCCCATCCCTCCTCTGATTATCTCTCCCACCCCCACTTCCCTTTGCATTCTGCTCCAGCTGCCCTGGCCTCATGGCTGGG
3201 TTTCCACCAAAGCAGGCACTTCCCATCACAGGGCCATTTCCCCGCCTGTGGCTTCTGCTTGACATTCCCTTTTCCCTGAT
3281 ATCCCCTTGACTCATTATTCCCTTTCTTCCTTAACTCTTCTGAGATCCAGCTTCTCAGTGATACCACACAGCCCTACTCC
3361 CCCCAGAGCCCATCTAGAGCTCACCTTTCCAGTCGCCCTTGCCAGGCTCAGTGGAGGCTCTTTGTTCCCCATACAGTACG
3441 TGTCGTCGTACTATATTGTTAGGCTTATTTAATTTATGTATGTTTTGCCTTTTTGTGCTAAATGTAAACACCACAAGGGG
3521 AGGTATCTTTGTCTGTTGACAATGATACATTCAATGTTTCTCAAGCACCCCCAATGCTGGTTTGTATGTGGTTATCATTC
3601 AATCTGTATTTGTTGAATGAATAAATGATTGACTATGTGGAGAGCAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gucUUAGGAA--CGGACCCACg 5'
             |: ||||  | ||||||| 
Target 5' ataAGACCTTAAGGCTGGGTGc 3'
 790 - 811 155.00 -20.00
2 
miRNA  3' guCUUAGGAACGGACCCACg 5'
            ||| |    |||||||| 
Target 5' ggGAAGC----CCTGGGTGg 3'
 2188 - 2203 148.00 -15.10
3 
miRNA  3' gucUUAGGA--ACGGACCCAcg 5'
             |||: |  ||:||||||  
Target 5' aatAATTATTATGTCTGGGTac 3'
 1378 - 1399 139.00 -13.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30453767 6 COSMIC
COSN31511987 8 COSMIC
COSN30481073 11 COSMIC
COSN30185788 20 COSMIC
COSN511287 25 COSMIC
COSN13533211 29 COSMIC
COSN26694197 30 COSMIC
COSN30488683 32 COSMIC
COSN31594280 34 COSMIC
COSN28749611 35 COSMIC
COSN31520795 35 COSMIC
COSN30103007 38 COSMIC
COSN32053579 38 COSMIC
COSN30185460 42 COSMIC
COSN30522789 43 COSMIC
COSN30452181 45 COSMIC
COSN30449524 55 COSMIC
COSN31510912 59 COSMIC
COSN30507592 60 COSMIC
COSN8637984 70 COSMIC
COSN30610765 74 COSMIC
COSN30507597 77 COSMIC
COSN511289 86 COSMIC
COSN30170291 112 COSMIC
COSN27295653 113 COSMIC
COSN30115355 145 COSMIC
COSN24407147 156 COSMIC
COSN26434451 228 COSMIC
COSN17522316 241 COSMIC
COSN31641459 264 COSMIC
COSN31643076 265 COSMIC
COSN7989336 281 COSMIC
COSN24898920 284 COSMIC
COSN5370206 296 COSMIC
COSN6032267 329 COSMIC
COSN5740147 412 COSMIC
COSN17075982 432 COSMIC
COSN32056909 504 COSMIC
COSN25840700 710 COSMIC
COSN1441605 711 COSMIC
COSN7214855 750 COSMIC
COSN6032268 859 COSMIC
COSN25257992 1146 COSMIC
COSN16450519 1186 COSMIC
COSN17182745 1188 COSMIC
COSN15564344 1194 COSMIC
COSN27137411 1202 COSMIC
COSN10046199 1438 COSMIC
COSN22736457 1465 COSMIC
COSN21006370 1471 COSMIC
COSN21930025 1474 COSMIC
COSN7989337 1500 COSMIC
COSN27965481 1718 COSMIC
COSN29889735 1721 COSMIC
rs10888263 1392 GWAS
rs61855715 2005 GWAS
rs66858280 2031 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1454414345 2 dbSNP
rs753518237 10 dbSNP
rs1189252522 11 dbSNP
rs1421659011 13 dbSNP
rs1338948745 14 dbSNP
rs757632138 16 dbSNP
rs765578018 20 dbSNP
rs750913869 22 dbSNP
rs1284840107 24 dbSNP
rs758859116 28 dbSNP
rs374955649 29 dbSNP
rs41268359 30 dbSNP
rs755037588 34 dbSNP
rs1254443792 35 dbSNP
rs1254580683 37 dbSNP
rs781335292 38 dbSNP
rs368583142 39 dbSNP
rs1425320291 42 dbSNP
rs770646501 44 dbSNP
rs372548944 47 dbSNP
rs1266085633 50 dbSNP
rs745832347 52 dbSNP
rs971358032 57 dbSNP
rs878874400 58 dbSNP
rs1338954148 60 dbSNP
rs1292844890 66 dbSNP
rs1401002040 69 dbSNP
rs570570203 74 dbSNP
rs765754733 81 dbSNP
rs981738567 113 dbSNP
rs893915267 122 dbSNP
rs1382136399 128 dbSNP
rs1390882459 134 dbSNP
rs1479052298 135 dbSNP
rs1009603231 138 dbSNP
rs1164528322 141 dbSNP
rs116605511 148 dbSNP
rs890627387 158 dbSNP
rs1411536839 160 dbSNP
rs1009025561 169 dbSNP
rs936964589 172 dbSNP
rs973859490 179 dbSNP
rs369305291 190 dbSNP
rs1018289447 210 dbSNP
rs964960522 218 dbSNP
rs1192440565 220 dbSNP
rs994532987 227 dbSNP
rs4925574 228 dbSNP
rs568690888 232 dbSNP
rs190286751 240 dbSNP
rs1332690446 241 dbSNP
rs930829166 245 dbSNP
rs756754966 250 dbSNP
rs1320508910 252 dbSNP
rs1333290443 262 dbSNP
rs983193582 264 dbSNP
rs1430411982 265 dbSNP
rs376018106 277 dbSNP
rs971641114 278 dbSNP
rs1326045194 279 dbSNP
rs1384574158 287 dbSNP
rs1393089185 296 dbSNP
rs1331691560 297 dbSNP
rs41268361 307 dbSNP
rs886582251 308 dbSNP
rs4925753 314 dbSNP
rs1269849344 319 dbSNP
rs1379308936 320 dbSNP
rs1196569848 323 dbSNP
rs1354012398 328 dbSNP
rs927216556 336 dbSNP
rs1268009319 344 dbSNP
rs900501423 346 dbSNP
rs1453207761 358 dbSNP
rs935921965 365 dbSNP
rs996577642 373 dbSNP
rs1053753215 376 dbSNP
rs1214365050 400 dbSNP
rs1346073560 405 dbSNP
rs1277186596 408 dbSNP
rs1033089922 409 dbSNP
rs1251136547 417 dbSNP
rs915233376 422 dbSNP
rs73139879 428 dbSNP
rs1161634473 429 dbSNP
rs1042453685 432 dbSNP
rs1010253873 433 dbSNP
rs1414826582 453 dbSNP
rs1366867131 456 dbSNP
rs1170803635 457 dbSNP
rs1453695853 458 dbSNP
rs1380799994 463 dbSNP
rs890519118 464 dbSNP
rs536999700 467 dbSNP
rs1231400827 468 dbSNP
rs768874125 469 dbSNP
rs1164143497 470 dbSNP
rs1281141655 473 dbSNP
rs1209405340 477 dbSNP
rs1393572933 479 dbSNP
rs971603804 483 dbSNP
rs558724439 486 dbSNP
rs1039188475 488 dbSNP
rs1370450945 490 dbSNP
rs186082577 494 dbSNP
rs1305714568 495 dbSNP
rs995087135 497 dbSNP
rs1448275178 499 dbSNP
rs1491374619 501 dbSNP
rs1491485761 502 dbSNP
rs9661539 503 dbSNP
rs559571205 504 dbSNP
rs1338298131 507 dbSNP
rs950373643 510 dbSNP
rs768383569 511 dbSNP
rs1361106440 512 dbSNP
rs1160318973 522 dbSNP
rs1405869536 525 dbSNP
rs574510411 525 dbSNP
rs1176889056 543 dbSNP
rs1473231055 544 dbSNP
rs971143484 558 dbSNP
rs982498227 565 dbSNP
rs980373283 568 dbSNP
rs41268363 574 dbSNP
rs957550445 580 dbSNP
rs563387201 584 dbSNP
rs990033914 589 dbSNP
rs1314670620 600 dbSNP
rs1282906987 602 dbSNP
rs1040668587 610 dbSNP
rs1483423982 611 dbSNP
rs530941458 613 dbSNP
rs913112461 615 dbSNP
rs1358059034 629 dbSNP
rs1290998338 630 dbSNP
rs1413946729 634 dbSNP
rs748066805 643 dbSNP
rs1184384581 644 dbSNP
rs1254356404 661 dbSNP
rs1423438446 667 dbSNP
rs1300025593 679 dbSNP
rs550026137 685 dbSNP
rs922169232 690 dbSNP
rs1158514907 692 dbSNP
rs1370558218 693 dbSNP
rs978032718 694 dbSNP
rs1405976251 697 dbSNP
rs1416244463 698 dbSNP
rs911991017 699 dbSNP
rs1162967922 700 dbSNP
rs932011689 702 dbSNP
rs1054366742 704 dbSNP
rs1448262073 710 dbSNP
rs893110636 711 dbSNP
rs1010286310 717 dbSNP
rs1221684375 723 dbSNP
rs1322931727 726 dbSNP
rs1429867208 727 dbSNP
rs111365624 729 dbSNP
rs377206378 729 dbSNP
rs907074601 730 dbSNP
rs944789517 733 dbSNP
rs1395062617 735 dbSNP
rs1039650686 749 dbSNP
rs1034301821 755 dbSNP
rs900663399 763 dbSNP
rs772132852 764 dbSNP
rs1437283051 770 dbSNP
rs1396778513 778 dbSNP
rs1324202364 780 dbSNP
rs1461092799 783 dbSNP
rs1296820008 784 dbSNP
rs1424559514 785 dbSNP
rs377135821 801 dbSNP
rs1427053473 804 dbSNP
rs1049346716 809 dbSNP
rs1207437804 812 dbSNP
rs1192277974 813 dbSNP
rs1254293909 814 dbSNP
rs1489210024 818 dbSNP
rs772668211 822 dbSNP
rs1004565610 823 dbSNP
rs760250584 830 dbSNP
rs1023962041 836 dbSNP
rs906971142 839 dbSNP
rs1448049310 840 dbSNP
rs564289287 843 dbSNP
rs1001283444 856 dbSNP
rs528546518 858 dbSNP
rs1012595818 859 dbSNP
rs1306634463 861 dbSNP
rs569019596 868 dbSNP
rs1301971299 872 dbSNP
rs1391351936 873 dbSNP
rs1220858220 875 dbSNP
rs1373346448 881 dbSNP
rs1301386566 882 dbSNP
rs766000497 885 dbSNP
rs966270337 886 dbSNP
rs1401325887 888 dbSNP
rs1300049854 893 dbSNP
rs1451856341 899 dbSNP
rs1460850763 900 dbSNP
rs976643715 909 dbSNP
rs1171954938 914 dbSNP
rs546827347 916 dbSNP
rs145243121 919 dbSNP
rs1212198895 920 dbSNP
rs1345673853 920 dbSNP
rs1372446520 920 dbSNP
rs34769974 920 dbSNP
rs559354300 920 dbSNP
rs1279453824 921 dbSNP
rs1303083646 922 dbSNP
rs1233669279 928 dbSNP
rs1377740081 931 dbSNP
rs1054602226 933 dbSNP
rs1432658491 934 dbSNP
rs914579139 935 dbSNP
rs1319615007 937 dbSNP
rs1365887638 939 dbSNP
rs1303822602 952 dbSNP
rs1436915128 954 dbSNP
rs1216250221 955 dbSNP
rs957204279 956 dbSNP
rs1173487509 958 dbSNP
rs141531395 960 dbSNP
rs1365011245 971 dbSNP
rs1179279384 976 dbSNP
rs1418116820 979 dbSNP
rs1020168832 992 dbSNP
rs967252694 994 dbSNP
rs978520150 996 dbSNP
rs1233972273 998 dbSNP
rs1265266911 999 dbSNP
rs1463675192 1000 dbSNP
rs551260226 1004 dbSNP
rs1256810052 1006 dbSNP
rs1217231774 1017 dbSNP
rs944822083 1025 dbSNP
rs974865710 1026 dbSNP
rs921974247 1030 dbSNP
rs1316577101 1034 dbSNP
rs930817658 1038 dbSNP
rs1417013640 1044 dbSNP
rs1189971679 1053 dbSNP
rs1267209847 1060 dbSNP
rs569411691 1061 dbSNP
rs894282376 1062 dbSNP
rs886721009 1072 dbSNP
rs537089852 1073 dbSNP
rs1156332525 1074 dbSNP
rs1452364155 1086 dbSNP
rs1045841290 1088 dbSNP
rs1166646947 1092 dbSNP
rs370009874 1092 dbSNP
rs1026863883 1093 dbSNP
rs1455286474 1093 dbSNP
rs1416870776 1105 dbSNP
rs1194354553 1109 dbSNP
rs1351614607 1110 dbSNP
rs951064870 1112 dbSNP
rs1259512403 1114 dbSNP
rs1203480676 1115 dbSNP
rs906875007 1119 dbSNP
rs558564052 1123 dbSNP
rs1001568003 1127 dbSNP
rs1034121648 1129 dbSNP
rs892856789 1130 dbSNP
rs1011391862 1138 dbSNP
rs1020054693 1141 dbSNP
rs368983580 1143 dbSNP
rs539290858 1148 dbSNP
rs1328725045 1152 dbSNP
rs1291721126 1154 dbSNP
rs967304973 1162 dbSNP
rs1390813812 1164 dbSNP
rs373838280 1168 dbSNP
rs1416662352 1176 dbSNP
rs1171155434 1177 dbSNP
rs377380314 1180 dbSNP
rs975165041 1184 dbSNP
rs1285248043 1187 dbSNP
rs1327395112 1189 dbSNP
rs1428054827 1191 dbSNP
rs1253675724 1193 dbSNP
rs1019916958 1196 dbSNP
rs557397715 1201 dbSNP
rs1467332285 1218 dbSNP
rs765670050 1231 dbSNP
rs569347198 1245 dbSNP
rs1341909650 1246 dbSNP
rs577628916 1250 dbSNP
rs1227314652 1251 dbSNP
rs1305032374 1253 dbSNP
rs536761026 1253 dbSNP
rs1393293422 1256 dbSNP
rs377034542 1258 dbSNP
rs1411517931 1259 dbSNP
rs990403220 1263 dbSNP
rs1167308462 1270 dbSNP
rs1246672762 1274 dbSNP
rs1195599103 1275 dbSNP
rs574575702 1279 dbSNP
rs1452587971 1284 dbSNP
rs914818290 1289 dbSNP
rs1182787285 1294 dbSNP
rs554580305 1297 dbSNP
rs1191307125 1299 dbSNP
rs975128379 1312 dbSNP
rs946081012 1318 dbSNP
rs1349265648 1322 dbSNP
rs1283019847 1341 dbSNP
rs1471438527 1346 dbSNP
rs922024077 1347 dbSNP
rs1369605551 1348 dbSNP
rs541617941 1349 dbSNP
rs1412162151 1352 dbSNP
rs1402262042 1364 dbSNP
rs557262164 1365 dbSNP
rs375038113 1369 dbSNP
rs574646892 1378 dbSNP
rs1377208131 1381 dbSNP
rs1171681970 1382 dbSNP
rs984981972 1385 dbSNP
rs1458321043 1388 dbSNP
rs796633581 1389 dbSNP
rs1055847013 1390 dbSNP
rs10888263 1392 dbSNP
rs796801642 1392 dbSNP
rs759866767 1397 dbSNP
rs931130579 1398 dbSNP
rs1048374525 1399 dbSNP
rs887010295 1401 dbSNP
rs940804218 1408 dbSNP
rs1045983302 1410 dbSNP
rs928857022 1411 dbSNP
rs150874607 1412 dbSNP
rs900803957 1413 dbSNP
rs1278530061 1418 dbSNP
rs879944852 1424 dbSNP
rs1227010467 1436 dbSNP
rs182621522 1438 dbSNP
rs1414064244 1439 dbSNP
rs45616435 1443 dbSNP
rs1011276358 1446 dbSNP
rs1225348011 1447 dbSNP
rs1041566220 1448 dbSNP
rs903033852 1451 dbSNP
rs1158205517 1452 dbSNP
rs1475770521 1453 dbSNP
rs1420440452 1454 dbSNP
rs12026417 1455 dbSNP
rs375827891 1461 dbSNP
rs1485648846 1462 dbSNP
rs1243150789 1466 dbSNP
rs1019546426 1468 dbSNP
rs1283193991 1471 dbSNP
rs576420634 1473 dbSNP
rs1470946705 1476 dbSNP
rs1021858215 1477 dbSNP
rs1232404998 1478 dbSNP
rs561995564 1482 dbSNP
rs142455309 1483 dbSNP
rs996222397 1484 dbSNP
rs1424388558 1488 dbSNP
rs1028981897 1489 dbSNP
rs1368561490 1496 dbSNP
rs1163251454 1497 dbSNP
rs550889685 1498 dbSNP
rs1475051133 1499 dbSNP
rs1420851757 1500 dbSNP
rs952147732 1504 dbSNP
rs984880507 1508 dbSNP
rs938654369 1509 dbSNP
rs1240983205 1515 dbSNP
rs915987581 1516 dbSNP
rs992021311 1516 dbSNP
rs1308666955 1517 dbSNP
rs1270822532 1522 dbSNP
rs907919361 1531 dbSNP
rs1307858461 1534 dbSNP
rs753195146 1535 dbSNP
rs962253086 1536 dbSNP
rs981987195 1543 dbSNP
rs928931855 1547 dbSNP
rs763380220 1548 dbSNP
rs886916989 1549 dbSNP
rs1324054429 1550 dbSNP
rs937570564 1558 dbSNP
rs1296085423 1561 dbSNP
rs1173214015 1564 dbSNP
rs1055425519 1567 dbSNP
rs1390046621 1572 dbSNP
rs914229650 1585 dbSNP
rs1193734107 1588 dbSNP
rs537366395 1592 dbSNP
rs551262526 1592 dbSNP
rs1273061360 1593 dbSNP
rs533649847 1600 dbSNP
rs1041451901 1605 dbSNP
rs552066341 1607 dbSNP
rs1202125803 1615 dbSNP
rs1236479161 1623 dbSNP
rs570483608 1624 dbSNP
rs45445998 1627 dbSNP
rs1373279383 1629 dbSNP
rs1301587708 1630 dbSNP
rs576728400 1631 dbSNP
rs899774171 1632 dbSNP
rs186168183 1634 dbSNP
rs1029034484 1635 dbSNP
rs190641290 1636 dbSNP
rs1174812677 1640 dbSNP
rs978077401 1644 dbSNP
rs1035941410 1647 dbSNP
rs1333757800 1648 dbSNP
rs9726827 1649 dbSNP
rs1175280941 1653 dbSNP
rs1015026909 1654 dbSNP
rs1318929181 1655 dbSNP
rs1258218361 1656 dbSNP
rs962422199 1658 dbSNP
rs556857520 1660 dbSNP
rs981656671 1662 dbSNP
rs1278325872 1665 dbSNP
rs1232562588 1666 dbSNP
rs1036265614 1669 dbSNP
rs952790791 1670 dbSNP
rs1350242643 1674 dbSNP
rs1399575414 1674 dbSNP
rs10578618 1676 dbSNP
rs1189753974 1676 dbSNP
rs1314073738 1676 dbSNP
rs1365187168 1676 dbSNP
rs1418269320 1676 dbSNP
rs1453779487 1676 dbSNP
rs1472174532 1676 dbSNP
rs200692058 1676 dbSNP
rs376074620 1676 dbSNP
rs72373794 1676 dbSNP
rs1270329074 1678 dbSNP
rs1340880200 1679 dbSNP
rs1216910401 1680 dbSNP
rs1484663554 1680 dbSNP
rs763583599 1680 dbSNP
rs1277518253 1683 dbSNP
rs1323748733 1684 dbSNP
rs984176246 1692 dbSNP
rs1245956876 1699 dbSNP
rs908378056 1704 dbSNP
rs1486234888 1705 dbSNP
rs1464429620 1708 dbSNP
rs1193823899 1715 dbSNP
rs1213884934 1719 dbSNP
rs1328951156 1720 dbSNP
rs939867382 1721 dbSNP
rs959020228 1722 dbSNP
rs991708407 1723 dbSNP
rs1243707184 1724 dbSNP
rs1041395504 1726 dbSNP
rs1382362648 1734 dbSNP
rs914787230 1746 dbSNP
rs1286805482 1749 dbSNP
rs543775711 1753 dbSNP
rs1172021006 1761 dbSNP
rs1430303187 1764 dbSNP
rs1166847369 1768 dbSNP
rs1471061091 1770 dbSNP
rs1157491441 1771 dbSNP
rs1474065592 1772 dbSNP
rs922532705 1773 dbSNP
rs932334685 1775 dbSNP
rs1429248775 1777 dbSNP
rs947072858 1779 dbSNP
rs184090265 1783 dbSNP
rs746043223 1786 dbSNP
rs1464629777 1789 dbSNP
rs775628711 1798 dbSNP
rs11204535 1809 dbSNP
rs943768904 1818 dbSNP
rs1010621675 1819 dbSNP
rs1040925356 1822 dbSNP
rs1292854850 1827 dbSNP
rs899657776 1835 dbSNP
rs1273714883 1838 dbSNP
rs1371285985 1839 dbSNP
rs1327501632 1841 dbSNP
rs1323894366 1842 dbSNP
rs932432559 1848 dbSNP
rs1168467688 1856 dbSNP
rs1463487850 1858 dbSNP
rs1371217270 1859 dbSNP
rs1186765746 1860 dbSNP
rs1448866040 1864 dbSNP
rs1265784692 1865 dbSNP
rs1328227695 1876 dbSNP
rs999023841 1877 dbSNP
rs1048358327 1879 dbSNP
rs1196700745 1884 dbSNP
rs1205460052 1885 dbSNP
rs1286286278 1887 dbSNP
rs888333500 1892 dbSNP
rs1006252304 1894 dbSNP
rs1347961585 1901 dbSNP
rs1305247779 1907 dbSNP
rs574179042 1910 dbSNP
rs188587764 1914 dbSNP
rs754762465 1917 dbSNP
rs1022984724 1920 dbSNP
rs192470982 1924 dbSNP
rs183013346 1925 dbSNP
rs1429254926 1926 dbSNP
rs778587530 1928 dbSNP
rs1162798709 1929 dbSNP
rs984245280 1931 dbSNP
rs1180309561 1932 dbSNP
rs1411428575 1933 dbSNP
rs1003360615 1940 dbSNP
rs1182992548 1941 dbSNP
rs540223703 1941 dbSNP
rs1035743354 1954 dbSNP
rs1250325477 1963 dbSNP
rs562252593 1965 dbSNP
rs991595424 1966 dbSNP
rs1281885298 1969 dbSNP
rs1216920435 1974 dbSNP
rs555502058 1976 dbSNP
rs961533670 1979 dbSNP
rs976595481 1981 dbSNP
rs1405262576 1983 dbSNP
rs367695185 1986 dbSNP
rs1348380800 1987 dbSNP
rs12064719 1989 dbSNP
rs968930263 1994 dbSNP
rs748051636 1996 dbSNP
rs771901224 2000 dbSNP
rs61855715 2005 dbSNP
rs943838048 2011 dbSNP
rs976916788 2012 dbSNP
rs544823336 2019 dbSNP
rs920998016 2020 dbSNP
rs1159354451 2026 dbSNP
rs1239562420 2028 dbSNP
rs66858280 2031 dbSNP
rs1048242862 2039 dbSNP
rs1209153104 2043 dbSNP
rs902245166 2046 dbSNP
rs1292337485 2048 dbSNP
rs117084223 2050 dbSNP
rs1203063490 2052 dbSNP
rs1207414494 2053 dbSNP
rs552105471 2059 dbSNP
rs939915730 2061 dbSNP
rs187308736 2062 dbSNP
rs139814092 2066 dbSNP
rs895942691 2067 dbSNP
rs143131827 2072 dbSNP
rs1036203626 2073 dbSNP
rs1367067811 2078 dbSNP
rs1233614840 2079 dbSNP
rs1357296643 2091 dbSNP
rs1445986082 2091 dbSNP
rs760292494 2105 dbSNP
rs1358632107 2108 dbSNP
rs894531894 2109 dbSNP
rs1013067288 2118 dbSNP
rs191789495 2119 dbSNP
rs1459054671 2120 dbSNP
rs952724240 2125 dbSNP
rs535186451 2141 dbSNP
rs1164774474 2144 dbSNP
rs1475699107 2148 dbSNP
rs1420736125 2154 dbSNP
rs550617054 2156 dbSNP
rs1005543725 2167 dbSNP
rs568737138 2174 dbSNP
rs1426026776 2180 dbSNP
rs207461409 2187 dbSNP
rs961504540 2188 dbSNP
rs1391607721 2190 dbSNP
rs1267024223 2191 dbSNP
rs1330713522 2198 dbSNP
rs1214168432 2209 dbSNP
rs566384399 2213 dbSNP
rs1029507820 2217 dbSNP
rs1227645839 2223 dbSNP
rs1315684218 2225 dbSNP
rs1270871037 2230 dbSNP
rs965434219 2232 dbSNP
rs976415407 2234 dbSNP
rs985380163 2235 dbSNP
rs1273977101 2249 dbSNP
rs1163339696 2250 dbSNP
rs547178901 2257 dbSNP
rs1405324515 2264 dbSNP
rs1481123102 2271 dbSNP
rs921040131 2276 dbSNP
rs953755966 2288 dbSNP
rs983993249 2295 dbSNP
rs909708557 2303 dbSNP
rs939801268 2305 dbSNP
rs1469685405 2312 dbSNP
rs1244797485 2313 dbSNP
rs143279110 2314 dbSNP
rs1442235163 2321 dbSNP
rs923578521 2332 dbSNP
rs1274942634 2334 dbSNP
rs1037357096 2336 dbSNP
rs1056581703 2341 dbSNP
rs1297200109 2347 dbSNP
rs895988838 2348 dbSNP
rs1369948168 2349 dbSNP
rs61855716 2357 dbSNP
rs938695612 2358 dbSNP
rs1057120290 2359 dbSNP
rs1171019886 2361 dbSNP
rs894588398 2364 dbSNP
rs1427320925 2373 dbSNP
rs1388981843 2377 dbSNP
rs1173676422 2382 dbSNP
rs1434570861 2386 dbSNP
rs1422554188 2389 dbSNP
rs1012954366 2394 dbSNP
rs1005784365 2396 dbSNP
rs572793677 2407 dbSNP
rs1015610034 2415 dbSNP
rs897115051 2416 dbSNP
rs998285919 2419 dbSNP
rs770133803 2426 dbSNP
rs534225692 2430 dbSNP
rs555458138 2431 dbSNP
rs1299460954 2433 dbSNP
rs1219069365 2434 dbSNP
rs946703 2435 dbSNP
rs183885910 2437 dbSNP
rs1408572752 2439 dbSNP
rs1384960487 2447 dbSNP
rs1370435314 2472 dbSNP
rs200236634 2474 dbSNP
rs998280459 2484 dbSNP
rs1357132632 2486 dbSNP
rs1174894506 2487 dbSNP
rs189525806 2489 dbSNP
rs764492436 2495 dbSNP
rs578223475 2496 dbSNP
rs1472236117 2506 dbSNP
rs978383397 2510 dbSNP
rs953809752 2511 dbSNP
rs545607500 2513 dbSNP
rs1344551202 2518 dbSNP
rs114925189 2521 dbSNP
rs1245351225 2524 dbSNP
rs1463980861 2526 dbSNP
rs909592282 2527 dbSNP
rs1262962726 2530 dbSNP
rs1428628196 2535 dbSNP
rs1350420452 2536 dbSNP
rs527969266 2536 dbSNP
rs75089463 2547 dbSNP
rs1375629570 2552 dbSNP
rs1399400770 2556 dbSNP
rs1301935033 2562 dbSNP
rs972564445 2563 dbSNP
rs144623443 2567 dbSNP
rs1156700853 2569 dbSNP
rs1456446636 2586 dbSNP
rs528852851 2594 dbSNP
rs192181631 2596 dbSNP
rs1176980088 2597 dbSNP
rs1425678859 2598 dbSNP
rs112623248 2599 dbSNP
rs867567351 2606 dbSNP
rs939264229 2614 dbSNP
rs568573919 2616 dbSNP
rs1465527853 2622 dbSNP
rs1057452097 2632 dbSNP
rs75119406 2633 dbSNP
rs1037653297 2636 dbSNP
rs948690938 2640 dbSNP
rs897195977 2645 dbSNP
rs998583043 2650 dbSNP
rs1247581712 2653 dbSNP
rs1339184299 2658 dbSNP
rs1311415077 2667 dbSNP
rs1382240544 2668 dbSNP
rs1366922048 2689 dbSNP
rs1043128171 2706 dbSNP
rs1362508215 2716 dbSNP
rs904585781 2719 dbSNP
rs999456672 2721 dbSNP
rs1164740953 2723 dbSNP
rs1022096656 2727 dbSNP
rs1367765602 2735 dbSNP
rs1164182361 2741 dbSNP
rs1345186187 2742 dbSNP
rs551159993 2744 dbSNP
rs1186879954 2748 dbSNP
rs999451875 2754 dbSNP
rs1268530586 2763 dbSNP
rs1327535999 2767 dbSNP
rs1215456415 2768 dbSNP
rs1031333424 2772 dbSNP
rs1265302948 2775 dbSNP
rs960433319 2777 dbSNP
rs1343651605 2782 dbSNP
rs566461987 2785 dbSNP
rs1227256266 2788 dbSNP
rs1371217705 2794 dbSNP
rs998439770 2803 dbSNP
rs916227794 2805 dbSNP
rs1390014650 2807 dbSNP
rs1028545509 2821 dbSNP
rs753492090 2822 dbSNP
rs781109381 2823 dbSNP
rs910056134 2824 dbSNP
rs1449113924 2825 dbSNP
rs1378362730 2829 dbSNP
rs1264632293 2847 dbSNP
rs1479942407 2862 dbSNP
rs367876255 2873 dbSNP
rs77373480 2882 dbSNP
rs1206457077 2884 dbSNP
rs1430917434 2886 dbSNP
rs185708455 2888 dbSNP
rs1037322755 2895 dbSNP
rs372033751 2898 dbSNP
rs566651856 2899 dbSNP
rs1455272953 2900 dbSNP
rs1034857986 2903 dbSNP
rs1307661699 2911 dbSNP
rs1051062672 2916 dbSNP
rs1368574731 2917 dbSNP
rs1306273775 2918 dbSNP
rs889754546 2928 dbSNP
rs1291929685 2934 dbSNP
rs960943815 2935 dbSNP
rs778694651 2939 dbSNP
rs1043750575 2940 dbSNP
rs1405571180 2950 dbSNP
rs1183289251 2955 dbSNP
rs1473866763 2968 dbSNP
rs903735485 2970 dbSNP
rs555605616 2986 dbSNP
rs1223618756 2989 dbSNP
rs1280363868 2991 dbSNP
rs564521255 2998 dbSNP
rs1343795628 3000 dbSNP
rs948743336 3001 dbSNP
rs978717712 3014 dbSNP
rs1268548826 3016 dbSNP
rs1319310668 3018 dbSNP
rs1348560325 3019 dbSNP
rs926061155 3021 dbSNP
rs1291600327 3027 dbSNP
rs1441639378 3028 dbSNP
rs1490051180 3049 dbSNP
rs1341118126 3063 dbSNP
rs1222536961 3067 dbSNP
rs533709326 3070 dbSNP
rs1002338770 3073 dbSNP
rs1401697257 3073 dbSNP
rs758264326 3077 dbSNP
rs934757245 3082 dbSNP
rs1471394412 3083 dbSNP
rs1459155013 3086 dbSNP
rs1436328841 3092 dbSNP
rs1472866389 3092 dbSNP
rs573951903 3092 dbSNP
rs1238729302 3093 dbSNP
rs1184713936 3100 dbSNP
rs1053728294 3101 dbSNP
rs901348573 3103 dbSNP
rs934113252 3105 dbSNP
rs1441497480 3106 dbSNP
rs1408437716 3107 dbSNP
rs1268293019 3119 dbSNP
rs1013475894 3121 dbSNP
rs1420585505 3123 dbSNP
rs1326798588 3128 dbSNP
rs1267480407 3129 dbSNP
rs376904373 3130 dbSNP
rs1358320303 3131 dbSNP
rs538198473 3135 dbSNP
rs556734597 3143 dbSNP
rs1445827833 3144 dbSNP
rs72774616 3147 dbSNP
rs1321447078 3148 dbSNP
rs545644258 3150 dbSNP
rs190575077 3156 dbSNP
rs1416520015 3176 dbSNP
rs1160956787 3177 dbSNP
rs1472176863 3185 dbSNP
rs1248320394 3189 dbSNP
rs1190088288 3190 dbSNP
rs1463409507 3198 dbSNP
rs1441729811 3200 dbSNP
rs1359698278 3202 dbSNP
rs1016593131 3204 dbSNP
rs1221955290 3205 dbSNP
rs1453258680 3211 dbSNP
rs896936618 3214 dbSNP
rs1226735698 3217 dbSNP
rs903022284 3222 dbSNP
rs1358787500 3225 dbSNP
rs993924450 3230 dbSNP
rs1298656142 3234 dbSNP
rs934565602 3237 dbSNP
rs1230923778 3242 dbSNP
rs962936546 3243 dbSNP
rs572567207 3244 dbSNP
rs918738588 3245 dbSNP
rs1226921180 3247 dbSNP
rs960574961 3248 dbSNP
rs934248846 3255 dbSNP
rs1390224022 3259 dbSNP
rs1051252964 3264 dbSNP
rs990591281 3265 dbSNP
rs1023534545 3268 dbSNP
rs747881611 3269 dbSNP
rs1293307439 3281 dbSNP
rs542973832 3281 dbSNP
rs1435788005 3284 dbSNP
rs942700501 3286 dbSNP
rs576691446 3287 dbSNP
rs1220695486 3294 dbSNP
rs1043823708 3297 dbSNP
rs1233039869 3310 dbSNP
rs1340311866 3330 dbSNP
rs1295123909 3340 dbSNP
rs1220236967 3343 dbSNP
rs925946431 3344 dbSNP
rs1451236684 3348 dbSNP
rs1273624590 3349 dbSNP
rs1404915084 3352 dbSNP
rs561584000 3353 dbSNP
rs1371650356 3354 dbSNP
rs999592916 3359 dbSNP
rs1427252857 3363 dbSNP
rs988913868 3364 dbSNP
rs528892803 3365 dbSNP
rs922653489 3372 dbSNP
rs1422832981 3375 dbSNP
rs550153705 3381 dbSNP
rs896287834 3385 dbSNP
rs934187645 3390 dbSNP
rs1184524552 3391 dbSNP
rs199597230 3395 dbSNP
rs781258321 3396 dbSNP
rs1251019134 3405 dbSNP
rs1211050882 3408 dbSNP
rs1445143383 3410 dbSNP
rs1314123479 3411 dbSNP
rs570097294 3412 dbSNP
rs1276977148 3418 dbSNP
rs1165611385 3427 dbSNP
rs148477504 3428 dbSNP
rs1351717058 3431 dbSNP
rs551025181 3440 dbSNP
rs181899973 3441 dbSNP
rs771841462 3445 dbSNP
rs114415303 3446 dbSNP
rs61855717 3448 dbSNP
rs142631182 3452 dbSNP
rs537898121 3456 dbSNP
rs1012056429 3462 dbSNP
rs1179899321 3474 dbSNP
rs1026241759 3477 dbSNP
rs1249949553 3478 dbSNP
rs1384262263 3479 dbSNP
rs1182470912 3489 dbSNP
rs955529230 3492 dbSNP
rs1235941666 3521 dbSNP
rs1203495028 3523 dbSNP
rs1330211916 3528 dbSNP
rs563453150 3530 dbSNP
rs770526242 3534 dbSNP
rs1023421381 3536 dbSNP
rs775837829 3539 dbSNP
rs749592425 3540 dbSNP
rs1316790845 3549 dbSNP
rs1312821485 3550 dbSNP
rs1336896742 3553 dbSNP
rs11204536 3555 dbSNP
rs1390529079 3569 dbSNP
rs1156636539 3591 dbSNP
rs1452994723 3596 dbSNP
rs1368925270 3598 dbSNP
rs184672573 3599 dbSNP
rs979420707 3603 dbSNP
rs925278643 3605 dbSNP
rs989188609 3606 dbSNP
rs1465479746 3609 dbSNP
rs1250310036 3611 dbSNP
rs935421302 3620 dbSNP
rs1052489669 3623 dbSNP
rs896347906 3625 dbSNP
rs949190692 3629 dbSNP
rs769181380 3632 dbSNP
rs188956821 3638 dbSNP
rs1359253846 3647 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 25893.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gucuuaggaaCGGACCCACg 5'
                    | ||||||| 
Target 5' ---------aGGCUGGGUGc 3'
 		1 - 11
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000366481.3 | 3UTR | AGGCUGGGUGCAGUGGCUCACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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