pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF860   
Synonyms -
Description zinc finger protein 860
Transcript NM_001137674   
Expression
Putative miRNA Targets on ZNF860
3'UTR of ZNF860
(miRNA target sites are highlighted)
>ZNF860|NM_001137674|3'UTR
   1 AGGTCACTCCTTGCAAAACATCAGAAAATTCATTCCTGAGATAATTGTTCCAAATGCAATGAGTATAGCAAACCATCAAG
  81 CATTAATTGACATTAGAGTCAATTCAGCATTGACTTGAGTTTCAGTTGACTTGACATTGAGTTCAAGCATTAATTGACAT
 161 TAAAGTGTTTACGTTAAGAGGATTGGGCTGGGCAGGGTGGCTTATACCTGTAATCCCAGCACTGTGGGAGGTCAAGACGG
 241 ATAGATCACTTGAGGTCAGGAGTTTGAGACCATCCTGGCCAAAAGACGTGAGCCACTTTTCCTAGCCTGTTTTTTGTTTC
 321 TGATAGGGATTTTTATGGGTATTGTGTTGAATCTAAATCACATTGGGTTATATAATCATTTAACAATATTAATCTTTCCA
 401 ATCCATCAATATGGGTCATATCTCTATTTATATAAGTTTTTAATCATTTTGATCAATGTTTGTAGATTTCAAGGTACAAA
 481 CTTCTCACCTTTTTACGTTTATTCCTAAATATTTCTTACTGTAAGTTCTCTAGCAAATGGAAGTGTTTTCTTAATTTTCT
 561 TTTAACATTGTTTATTGTTAATGTATGGAAATTTAACTAATTTTTGGTACTGATATTGTATTCTGCAAATACACTGTGTT
 641 TATTAGCTTCAGTAGTATTTTAGTTGACTCTGTGATTTTCTACACAGCAGATCATGTCATCTACAAACAAATACAATTTT
 721 ACTTCTTTCTTTCTGAAAAAAAAAATGGATAACTAATAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accCGAAA--GA--UCAGAGUCGAga 5'
             || ||  ||  |||:||||:|  
Target 5' tcaGCATTGACTTGAGTTTCAGTTga 3'
104 - 129 127.00 -12.80
2
miRNA  3' acccgAAAGAUCAGAGUCGAGa 5'
               | |:||   |:||||: 
Target 5' cactgTGTTTA---TTAGCTTc 3'
632 - 650 114.00 -6.90
3
miRNA  3' acccgAAAG-AUCAGAGUCGAGa 5'
               |||| || | | ||:|| 
Target 5' aaataTTTCTTACTGTAAGTTCt 3'
507 - 529 113.00 -8.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31559150 11 COSMIC
COSN15627184 36 COSMIC
COSN31548603 37 COSMIC
COSN26577329 39 COSMIC
COSN15316003 118 COSMIC
COSN30104199 119 COSMIC
COSN30511154 132 COSMIC
COSN31592194 135 COSMIC
COSN30133816 173 COSMIC
COSN15627185 216 COSMIC
COSN31530039 234 COSMIC
COSN7605963 239 COSMIC
COSN31534457 253 COSMIC
COSN31558716 265 COSMIC
COSN26506174 274 COSMIC
COSN31551634 306 COSMIC
COSN31563160 360 COSMIC
COSN26466329 395 COSMIC
COSN30511314 423 COSMIC
COSN6765769 535 COSMIC
COSN30120990 566 COSMIC
COSN30130455 576 COSMIC
COSN6765770 585 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747339152 4 dbSNP
rs755331382 9 dbSNP
rs781574347 10 dbSNP
rs748634300 19 dbSNP
rs1193294429 36 dbSNP
rs1417902996 44 dbSNP
rs201417413 45 dbSNP
rs1191159722 48 dbSNP
rs1405756981 50 dbSNP
rs531025598 57 dbSNP
rs1037595243 70 dbSNP
rs182040007 75 dbSNP
rs1272720583 76 dbSNP
rs757673453 78 dbSNP
rs1350274951 79 dbSNP
rs567644032 86 dbSNP
rs1278487410 92 dbSNP
rs1172463315 105 dbSNP
rs1233587029 106 dbSNP
rs1281411991 118 dbSNP
rs34397293 118 dbSNP
rs1444277776 120 dbSNP
rs1049739965 129 dbSNP
rs1327900408 137 dbSNP
rs1415199591 151 dbSNP
rs891156759 153 dbSNP
rs1171375218 154 dbSNP
rs1447103128 163 dbSNP
rs1008224824 166 dbSNP
rs1159848678 171 dbSNP
rs553670692 173 dbSNP
rs775563358 174 dbSNP
rs1397777587 189 dbSNP
rs1255587157 190 dbSNP
rs111514380 206 dbSNP
rs1286403497 207 dbSNP
rs1340606465 208 dbSNP
rs1222174536 211 dbSNP
rs753901570 220 dbSNP
rs1278907442 221 dbSNP
rs1216812642 222 dbSNP
rs1233611698 229 dbSNP
rs538813533 231 dbSNP
rs189162672 239 dbSNP
rs1277198043 240 dbSNP
rs1011717742 242 dbSNP
rs1311941875 247 dbSNP
rs150561647 248 dbSNP
rs537127699 253 dbSNP
rs1319677040 266 dbSNP
rs1398477405 267 dbSNP
rs1407823391 271 dbSNP
rs1166294566 272 dbSNP
rs13094125 274 dbSNP
rs35460795 279 dbSNP
rs770593826 286 dbSNP
rs546924080 288 dbSNP
rs559175151 289 dbSNP
rs139660663 297 dbSNP
rs1446512012 310 dbSNP
rs1267352044 312 dbSNP
rs1214233648 317 dbSNP
rs1336920841 321 dbSNP
rs1291178386 325 dbSNP
rs1232493100 328 dbSNP
rs1362167034 332 dbSNP
rs34434923 336 dbSNP
rs1427962038 337 dbSNP
rs1413681184 340 dbSNP
rs1344085794 346 dbSNP
rs1326060681 348 dbSNP
rs563496532 349 dbSNP
rs973216644 350 dbSNP
rs530647854 352 dbSNP
rs867013250 378 dbSNP
rs1164610484 387 dbSNP
rs149742014 398 dbSNP
rs77522742 410 dbSNP
rs1417413488 416 dbSNP
rs376820073 422 dbSNP
rs1185001667 425 dbSNP
rs1360595801 425 dbSNP
rs1432330559 426 dbSNP
rs1273557877 433 dbSNP
rs1195621144 436 dbSNP
rs1469732252 438 dbSNP
rs1271225406 449 dbSNP
rs1052116236 452 dbSNP
rs1307867667 456 dbSNP
rs1274938859 460 dbSNP
rs1212425410 474 dbSNP
rs1360893965 482 dbSNP
rs143588522 482 dbSNP
rs1442497926 484 dbSNP
rs944053535 489 dbSNP
rs1367454291 497 dbSNP
rs1053107816 498 dbSNP
rs1356634777 503 dbSNP
rs1220344729 504 dbSNP
rs1305997744 506 dbSNP
rs1409575163 519 dbSNP
rs891862225 521 dbSNP
rs775511857 525 dbSNP
rs181380602 531 dbSNP
rs1323662254 538 dbSNP
rs528469118 541 dbSNP
rs1190547901 543 dbSNP
rs1480950696 553 dbSNP
rs1021786859 554 dbSNP
rs534779573 555 dbSNP
rs1340965988 562 dbSNP
rs1280626709 568 dbSNP
rs116569332 571 dbSNP
rs1345122457 577 dbSNP
rs1300072491 581 dbSNP
rs1392460391 594 dbSNP
rs1219531662 597 dbSNP
rs879506321 611 dbSNP
rs1376218515 630 dbSNP
rs112017489 632 dbSNP
rs1441963341 638 dbSNP
rs753212068 653 dbSNP
rs1175767437 666 dbSNP
rs1477635949 670 dbSNP
rs1394547235 676 dbSNP
rs959667639 685 dbSNP
rs1194195626 714 dbSNP
rs1396603860 715 dbSNP
rs1437661396 726 dbSNP
rs1004570697 736 dbSNP
rs1410107356 736 dbSNP
rs1014623982 743 dbSNP
rs1157640062 744 dbSNP
rs1007596090 746 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 344787.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000360311.4 | 3UTR | CUCACCACAACUUCCACCUCCCAGGUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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