pre-miRNA Information
pre-miRNA hsa-mir-655   
Genomic Coordinates chr14: 101049550 - 101049646
Synonyms MIRN655, hsa-mir-655, MIR655
Description Homo sapiens miR-655 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-655-5p
Sequence 23| AGAGGUUAUCCGUGUUAUGUUC |44
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766575622 4 dbSNP
rs754023562 5 dbSNP
rs757713353 10 dbSNP
rs369862924 11 dbSNP
rs552601004 12 dbSNP
rs753191773 14 dbSNP
rs569206109 15 dbSNP
rs373094888 18 dbSNP
rs778280798 22 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF100   
Synonyms -
Description zinc finger protein 100
Transcript NM_173531   
Expression
Putative miRNA Targets on ZNF100
3'UTR of ZNF100
(miRNA target sites are highlighted)
>ZNF100|NM_173531|3'UTR
   1 AAAATGTGGCAAAGCCTTTTACCAGTCCTCAACTCTTACTAAACATAAAAAAATTCATACTGGAGGGAACTCCTGTGACT
  81 GTGAAGAATATGGCAAAGCCTTTAATAAATTCTCAATTCCTAACAGACATAAGATAATTCATACTAGAGAGAAATTCTAC
 161 AAACCAGAAAGATGTGACAGTGCTTTGAAAACACCTCAAACTTTTCAAAACATAAATCATAGTGTTGAGAAATCCTAGAA
 241 ATGTGAAGAATGTGATAAAGTTTTAAATGGTTGTCACACTTGATTGTAGGTAAGGTAAGTTATACTGGAGAAAACTTCTA
 321 CATGTGTGAACAGTGTGACAAAACTTTTAACTAATGCTCACACCTTCACAGGAAAGCATTTATACTTGAGAAATATTGTA
 401 CAAATATAAAGACTGTGAAAAAGCCATTAATACATGCTCACATCTTACTCAACATCAGAGAGTTCATACTCAATAAAAAC
 481 ATAAGTGCAACTACTGTCAAAATATCTTTAAGAAAATATAAGCTTTTAAAGTGAAGAGTATTTTGAAGAAGAACATTGTA
 561 GTAGAATTGTAATATGTTTACTTGTATCACAGATCTTACTGTACACGTTTTGTATTAGAGGAAACCTCTGAAGCAGTTGC
 641 TCAAACTTTGTTCAATATCAGGGAATTTATATTGAAAAAAACTGTGCGAATGTAATAAAGTTGGAAAAATACTTTTTCAA
 721 AAACTACAGCTTAGAAAACACCAGAGAGTTCATACTAAAACATATTTTTGCAGATACAGGAAAAATTTTTTAAAAATTTT
 801 AATCATTAAGTCTGTAAATATCAGAGAATTTACAGTAGAAATATGTAAGGCACTGATGCTTCAGGTATTTTACTAAATCA
 881 GAGTGCTGAGTATAGAAAATAATCTAAAACTAAAATTGGTAAAATATTTGTATATAACTTTAAAAGTAGAAATTTTTTGC
 961 AGTTATTGCATTCAAAGTATGCTTAACTTTTTGAAAAAATTAGATTTTTTGAAAAGTGAGTAATAATGTAATTCAACTCT
1041 TAAATTATTTCCTGCCTTTTCTTCACTCCTATTTACATGTGAAAGCATGTGATCAATTGTTGCTGCATCAGATATGAGAG
1121 ATTCTTTTTTATTAGGTGAGCATTATTTATAAACTTTGCTATGAAAAAGACATTAAAATATGAGATGTATGATGAAAATC
1201 TAAGTGAAGAGACTTTTATGGTTAACTTATAATATTAAGCAATGTGTGCGTTAGGCATTCAGAGTAATATTCTGCATTAT
1281 GAGAAAACTTAATTTCATTTATAAGTAAATTAAAATTAGTATATTTTACTAATACTTTTATATAAAATGCAGTATATTTT
1361 TTAAATTTCAGATTATATGTGATGTTAATATATTCAACCTTTTTAACATGTTAAATACTATTGTGCATTCAGTGAAGTGT
1441 TATTATGCCACAGACATTAACCTATTCCACCTTACTCAAGGGTGTACGTAAAACATGGTAACAGTATACTATTTGGTAAC
1521 ATAATGGATTAACATCTCTAGTAATCTCTTTTGCTAGTGGCTTTGACTGCAAATAAGTTAAAGAATATTATTTCTGTAGG
1601 TTAAATTTTTGTTTTTATTTTATTTTATTTTTGAGAGGTAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGAT
1681 CTCGGCTCACTGTAACCTCCACCTCCTGGGTTCACGCAATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGCA
1761 CCCACCACCATGCCCAGCTAATTTTTGTATTTTAGTAGAGACAGGGTTTCATAATGTAAGTCAAGCTGGTCTCGAACTCC
1841 TGACCTTAAATGATTTGCCTGCCTCGGCTTCCCAAAGTTCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCAAATGTT
1921 TATTTTATTTAAATTTATTTTTCTTAATTATTTGGGGTACATAATATGAGTATATATTCATGCAATATATGGCATATTTT
2001 GATACAAGAATACAGTATATAATAATCACATCAGGGTAAATGAGGTATCCATCACCTCTAGTATTTATCCTTTGTATTAC
2081 AAGCAACCCAGTTTTATACTTTTAGTTATTTTAAAATGTAAAATTAAATTGTTATTGATTACAGTGTTATTTTTATGGTC
2161 ATAATAAAAGTTATGTAGAAGTATAATAAAATCCCTACATTTCTGAGGCCTGAATAAGTATTTTTAAAGTTTTCTAATAT
2241 TTATTTTTTGAGCATGTTTCCTGTCTGCCTGCAAACACATGCAGACATTTAGTTTTGATTTACATATAGTTAAATATATG
2321 TTAGTCTAAAGATAAACCTTAAGTGTAAGAAAATTATAGAGTGAGTTTGTGTGTATGAATTTGTACCTGTTTTCCGAAGA
2401 AAAAAGCAATACTGAACAAAACAAATCATTTTAACAAGATGACTACTAGAAAACTAAAAGCCTCAAAAATGCTAAAAGAA
2481 AATGTATTCTCTGCTTTGTATTGAATTTATTACTGTACATTCTGTGGCTTATAGTTCTGAATCTCCCCATGAAAATTCTG
2561 TTTATACTTGCCTGGTACTCATGATAGACCCCTAATTATTTTGTATCTTTTTTCATATAAATATTTTACAGATTATGAAG
2641 TAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuguauuGUGCCUAUUGGAGa 5'
                  ||| | ||||||| 
Target 5' tctcggctCACTG-TAACCTCc 3'
1680 - 1700 149.00 -12.10
2
miRNA  3' cuuGUAUUGUGCCU---AUUGGAga 5'
             :||: ||| ||   ||||||  
Target 5' tatTATGCCACAGACATTAACCTat 3'
1441 - 1465 139.00 -8.90
3
miRNA  3' cuuguAUUGU---GCCUAUUGGAGa 5'
               |||||   |  :|||:||| 
Target 5' tggatTAACATCTCTAGTAATCTCt 3'
1525 - 1549 137.00 -11.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN27005818 2 COSMIC
COSN30466468 8 COSMIC
COSN27005828 9 COSMIC
COSN31602011 13 COSMIC
COSN31487709 35 COSMIC
COSN20079361 54 COSMIC
COSN30156128 56 COSMIC
COSN30451829 56 COSMIC
COSN30138631 72 COSMIC
COSN30105324 75 COSMIC
COSN31527107 123 COSMIC
COSN20115654 129 COSMIC
COSN7118358 287 COSMIC
COSN30136290 320 COSMIC
COSN31560144 356 COSMIC
COSN20115653 480 COSMIC
COSN20115647 683 COSMIC
COSN20115645 804 COSMIC
COSN15941127 887 COSMIC
COSN20115644 963 COSMIC
COSN1762979 1297 COSMIC
COSN21310835 1491 COSMIC
COSN29307999 1574 COSMIC
COSN21006552 1862 COSMIC
COSN1762978 1877 COSMIC
COSN8257381 1892 COSMIC
COSN6140003 1960 COSMIC
COSN9351005 1992 COSMIC
COSN23816160 2019 COSMIC
COSN25331650 2416 COSMIC
COSN17798039 2443 COSMIC
COSN20857481 2578 COSMIC
COSN5850265 2670 COSMIC
COSN19469902 2744 COSMIC
COSN6140002 2927 COSMIC
COSN18783453 3299 COSMIC
COSN6417256 3299 COSMIC
COSN32159155 3368 COSMIC
COSN24540735 3765 COSMIC
COSN21239653 3774 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774320913 2 dbSNP
rs371583303 4 dbSNP
rs1173868256 7 dbSNP
rs937010818 13 dbSNP
rs200386862 21 dbSNP
rs74254848 25 dbSNP
rs755503200 27 dbSNP
rs1357985847 29 dbSNP
rs769419741 30 dbSNP
rs745592612 33 dbSNP
rs1340551423 36 dbSNP
rs1280653235 37 dbSNP
rs1429164060 40 dbSNP
rs1381725708 43 dbSNP
rs978699013 45 dbSNP
rs1300024218 47 dbSNP
rs147762147 48 dbSNP
rs370777164 48 dbSNP
rs1407344273 50 dbSNP
rs112138139 53 dbSNP
rs1424869719 54 dbSNP
rs988658856 54 dbSNP
rs879243721 56 dbSNP
rs965430810 58 dbSNP
rs1019690588 70 dbSNP
rs1007413525 71 dbSNP
rs563323818 75 dbSNP
rs954062335 79 dbSNP
rs551399614 82 dbSNP
rs1181813493 84 dbSNP
rs762312687 87 dbSNP
rs879872068 107 dbSNP
rs1460881432 111 dbSNP
rs747449335 112 dbSNP
rs751617424 114 dbSNP
rs1457513507 115 dbSNP
rs533161708 117 dbSNP
rs1386714188 123 dbSNP
rs1381916213 124 dbSNP
rs1302282091 128 dbSNP
rs143574697 138 dbSNP
rs71178760 138 dbSNP
rs756581050 138 dbSNP
rs559335850 144 dbSNP
rs1283127940 155 dbSNP
rs181951395 158 dbSNP
rs896688670 160 dbSNP
rs1238293065 165 dbSNP
rs1463242041 166 dbSNP
rs1056876008 172 dbSNP
rs1316614161 174 dbSNP
rs1452781448 181 dbSNP
rs762353930 187 dbSNP
rs1196139145 192 dbSNP
rs937126464 199 dbSNP
rs1381320715 201 dbSNP
rs1320833594 206 dbSNP
rs1161078568 212 dbSNP
rs1409438227 213 dbSNP
rs1452817637 215 dbSNP
rs765408770 217 dbSNP
rs1383533943 218 dbSNP
rs1383305440 228 dbSNP
rs367606632 232 dbSNP
rs1393151181 244 dbSNP
rs926942406 248 dbSNP
rs1302689097 251 dbSNP
rs1043125809 260 dbSNP
rs947297312 270 dbSNP
rs573718293 277 dbSNP
rs1458917531 282 dbSNP
rs1387646019 286 dbSNP
rs1265600130 297 dbSNP
rs913172037 298 dbSNP
rs988749413 299 dbSNP
rs1267618642 302 dbSNP
rs965193060 303 dbSNP
rs1184193039 305 dbSNP
rs1249545033 307 dbSNP
rs912432296 311 dbSNP
rs1165299853 313 dbSNP
rs1370400575 317 dbSNP
rs1444114867 319 dbSNP
rs1162973227 320 dbSNP
rs1456624579 320 dbSNP
rs1390814243 321 dbSNP
rs1371195985 322 dbSNP
rs985557514 322 dbSNP
rs561952596 330 dbSNP
rs1396968817 333 dbSNP
rs1026952769 338 dbSNP
rs1341872378 341 dbSNP
rs750852860 344 dbSNP
rs974492497 347 dbSNP
rs961583102 349 dbSNP
rs1259486388 351 dbSNP
rs1015786424 353 dbSNP
rs1206687168 361 dbSNP
rs1249540614 363 dbSNP
rs1480299392 367 dbSNP
rs1182207088 376 dbSNP
rs1258055190 382 dbSNP
rs146734490 395 dbSNP
rs1183173165 396 dbSNP
rs1341177643 397 dbSNP
rs766488630 400 dbSNP
rs745954333 406 dbSNP
rs1391035231 407 dbSNP
rs1431635847 410 dbSNP
rs1166870357 414 dbSNP
rs1354450208 414 dbSNP
rs1293866355 415 dbSNP
rs142035412 418 dbSNP
rs1377381556 424 dbSNP
rs781553268 425 dbSNP
rs1270237201 430 dbSNP
rs1229234009 434 dbSNP
rs1229957388 437 dbSNP
rs373630349 444 dbSNP
rs1001260569 447 dbSNP
rs1324306492 448 dbSNP
rs767134994 452 dbSNP
rs1210676256 453 dbSNP
rs905625303 458 dbSNP
rs1042707485 463 dbSNP
rs947019721 466 dbSNP
rs891494117 482 dbSNP
rs35875819 483 dbSNP
rs1186732101 484 dbSNP
rs139477863 484 dbSNP
rs200281047 484 dbSNP
rs1418947244 485 dbSNP
rs1433876946 489 dbSNP
rs780504522 499 dbSNP
rs143481593 505 dbSNP
rs1469607213 510 dbSNP
rs372682632 510 dbSNP
rs985705132 511 dbSNP
rs1388882602 513 dbSNP
rs1286786935 517 dbSNP
rs1436878468 517 dbSNP
rs557777525 519 dbSNP
rs1303236858 527 dbSNP
rs1407975667 528 dbSNP
rs1321416286 535 dbSNP
rs1222664797 538 dbSNP
rs1268582925 545 dbSNP
rs748921048 554 dbSNP
rs1213860546 555 dbSNP
rs1241769740 557 dbSNP
rs1488809117 558 dbSNP
rs1372738083 560 dbSNP
rs1193056198 561 dbSNP
rs920021961 563 dbSNP
rs1199771942 564 dbSNP
rs1160318565 565 dbSNP
rs1414591375 568 dbSNP
rs1455992101 569 dbSNP
rs1315715921 570 dbSNP
rs758617903 575 dbSNP
rs1436571424 579 dbSNP
rs1294838814 582 dbSNP
rs1343545737 584 dbSNP
rs961353253 584 dbSNP
rs1015588230 595 dbSNP
rs1330889568 606 dbSNP
rs1221863056 607 dbSNP
rs1283819420 611 dbSNP
rs1322613907 612 dbSNP
rs1223835019 623 dbSNP
rs992331489 624 dbSNP
rs960954995 630 dbSNP
rs1183467734 633 dbSNP
rs1254609275 635 dbSNP
rs1468867451 638 dbSNP
rs1033826178 650 dbSNP
rs539399484 653 dbSNP
rs1002804985 654 dbSNP
rs572011911 655 dbSNP
rs1336802915 656 dbSNP
rs1164902751 657 dbSNP
rs1363123060 659 dbSNP
rs772920985 662 dbSNP
rs1308482372 669 dbSNP
rs1411455223 673 dbSNP
rs1423479142 674 dbSNP
rs1308500635 675 dbSNP
rs1352331466 681 dbSNP
rs1439734360 682 dbSNP
rs200478668 682 dbSNP
rs199752650 683 dbSNP
rs201149945 684 dbSNP
rs1278788185 685 dbSNP
rs1380121341 685 dbSNP
rs200445986 685 dbSNP
rs752821834 685 dbSNP
rs34358433 687 dbSNP
rs374437804 687 dbSNP
rs1223692957 688 dbSNP
rs1021777532 689 dbSNP
rs1277396271 695 dbSNP
rs1436639914 699 dbSNP
rs1011364457 705 dbSNP
rs1238457626 706 dbSNP
rs553363621 707 dbSNP
rs1473998792 710 dbSNP
rs535344505 712 dbSNP
rs111304617 713 dbSNP
rs1404951352 714 dbSNP
rs1443472862 714 dbSNP
rs1052772012 715 dbSNP
rs549195772 716 dbSNP
rs537147469 724 dbSNP
rs1049556492 733 dbSNP
rs1395817509 749 dbSNP
rs1313102996 762 dbSNP
rs1382398468 764 dbSNP
rs1229216838 770 dbSNP
rs1299978016 771 dbSNP
rs1337981622 774 dbSNP
rs932457516 775 dbSNP
rs1173422498 777 dbSNP
rs1202179146 785 dbSNP
rs919805135 786 dbSNP
rs1431244896 791 dbSNP
rs940111848 792 dbSNP
rs974126788 792 dbSNP
rs569770650 799 dbSNP
rs1167196293 801 dbSNP
rs551461191 803 dbSNP
rs533125862 804 dbSNP
rs138134275 805 dbSNP
rs1458063940 805 dbSNP
rs3081586 806 dbSNP
rs201034736 807 dbSNP
rs1183850202 809 dbSNP
rs1320569508 810 dbSNP
rs1435589989 810 dbSNP
rs960923865 812 dbSNP
rs1226806598 814 dbSNP
rs1275894057 816 dbSNP
rs866089541 822 dbSNP
rs926851350 826 dbSNP
rs1222039888 827 dbSNP
rs1203952756 828 dbSNP
rs750719223 832 dbSNP
rs1261725072 835 dbSNP
rs981076698 837 dbSNP
rs1223298842 843 dbSNP
rs559710590 844 dbSNP
rs1444708977 849 dbSNP
rs1191930259 851 dbSNP
rs1351773045 853 dbSNP
rs1481406431 856 dbSNP
rs1173952613 878 dbSNP
rs1428292065 881 dbSNP
rs1160458941 883 dbSNP
rs780028495 884 dbSNP
rs1440590114 885 dbSNP
rs2203944 892 dbSNP
rs1188867198 895 dbSNP
rs139993062 896 dbSNP
rs1011288990 900 dbSNP
rs1404196941 902 dbSNP
rs1175885475 903 dbSNP
rs1413730224 904 dbSNP
rs955780553 908 dbSNP
rs1160276778 916 dbSNP
rs1204015637 920 dbSNP
rs1031312730 930 dbSNP
rs1197129533 934 dbSNP
rs375847733 939 dbSNP
rs573592597 946 dbSNP
rs190253244 947 dbSNP
rs1362783434 949 dbSNP
rs890819918 952 dbSNP
rs757766358 953 dbSNP
rs543682506 957 dbSNP
rs1367469797 959 dbSNP
rs1422836421 965 dbSNP
rs1050101297 966 dbSNP
rs145400982 968 dbSNP
rs576313509 968 dbSNP
rs74174037 968 dbSNP
rs751821974 968 dbSNP
rs1393486964 971 dbSNP
rs1305377296 973 dbSNP
rs1333593311 973 dbSNP
rs898284230 975 dbSNP
rs1240893802 979 dbSNP
rs1038174713 980 dbSNP
rs1219628891 990 dbSNP
rs35748069 993 dbSNP
rs940082033 993 dbSNP
rs1483376299 997 dbSNP
rs1439941393 998 dbSNP
rs1197298926 1001 dbSNP
rs908654410 1003 dbSNP
rs73928572 1005 dbSNP
rs1188433681 1011 dbSNP
rs545937897 1015 dbSNP
rs1442851161 1016 dbSNP
rs571913740 1017 dbSNP
rs1350569725 1018 dbSNP
rs1316272551 1024 dbSNP
rs1464016459 1026 dbSNP
rs1296993201 1027 dbSNP
rs1248267987 1028 dbSNP
rs1380625041 1029 dbSNP
rs1315235854 1031 dbSNP
rs1384632889 1033 dbSNP
rs1336345679 1034 dbSNP
rs1431725041 1037 dbSNP
rs939337199 1039 dbSNP
rs1320041955 1041 dbSNP
rs1313806290 1042 dbSNP
rs1398940513 1048 dbSNP
rs1359837893 1055 dbSNP
rs146031386 1058 dbSNP
rs1206474461 1063 dbSNP
rs1164061763 1064 dbSNP
rs1480149083 1066 dbSNP
rs926677296 1071 dbSNP
rs1245184100 1083 dbSNP
rs1460188427 1090 dbSNP
rs1183033040 1096 dbSNP
rs1390824439 1098 dbSNP
rs1430404578 1099 dbSNP
rs1445965516 1101 dbSNP
rs149343160 1105 dbSNP
rs1339175790 1112 dbSNP
rs968329500 1115 dbSNP
rs1475533424 1116 dbSNP
rs1335695628 1122 dbSNP
rs915375732 1122 dbSNP
rs1244248607 1124 dbSNP
rs1214101293 1131 dbSNP
rs1361964421 1131 dbSNP
rs1293344962 1133 dbSNP
rs988320385 1136 dbSNP
rs955751489 1140 dbSNP
rs1223871938 1151 dbSNP
rs534987374 1154 dbSNP
rs1321193563 1158 dbSNP
rs1203218095 1161 dbSNP
rs1242928794 1166 dbSNP
rs1486851466 1167 dbSNP
rs1184928642 1169 dbSNP
rs1225307243 1169 dbSNP
rs1357433517 1171 dbSNP
rs574325084 1172 dbSNP
rs1008009083 1186 dbSNP
rs1469622024 1193 dbSNP
rs1175178988 1196 dbSNP
rs955213352 1199 dbSNP
rs1432271827 1202 dbSNP
rs1286660583 1212 dbSNP
rs555647415 1217 dbSNP
rs1027993213 1218 dbSNP
rs867546853 1218 dbSNP
rs1405440994 1219 dbSNP
rs997133148 1224 dbSNP
rs1321078888 1226 dbSNP
rs898425524 1229 dbSNP
rs1038147408 1230 dbSNP
rs761625017 1232 dbSNP
rs1213706719 1234 dbSNP
rs1260262363 1235 dbSNP
rs1490539805 1235 dbSNP
rs1202149415 1238 dbSNP
rs886973641 1241 dbSNP
rs1480309787 1243 dbSNP
rs1178196643 1249 dbSNP
rs1408237826 1249 dbSNP
rs1056468733 1250 dbSNP
rs1156532675 1261 dbSNP
rs764906364 1262 dbSNP
rs939488264 1265 dbSNP
rs537198538 1270 dbSNP
rs1304809267 1271 dbSNP
rs1343634963 1272 dbSNP
rs761337219 1291 dbSNP
rs776309143 1292 dbSNP
rs1375765679 1293 dbSNP
rs1421208838 1296 dbSNP
rs1184363939 1301 dbSNP
rs1360168517 1302 dbSNP
rs1045078430 1305 dbSNP
rs867070770 1307 dbSNP
rs1490343759 1308 dbSNP
rs1205623717 1309 dbSNP
rs1234919168 1315 dbSNP
rs1468947106 1317 dbSNP
rs1175061102 1319 dbSNP
rs1477712003 1319 dbSNP
rs545554217 1323 dbSNP
rs1379307177 1324 dbSNP
rs1444712995 1331 dbSNP
rs946927857 1338 dbSNP
rs1270020377 1340 dbSNP
rs1363618444 1340 dbSNP
rs1202274172 1344 dbSNP
rs915514616 1348 dbSNP
rs1275190446 1353 dbSNP
rs988415301 1355 dbSNP
rs935471897 1358 dbSNP
rs1279180020 1362 dbSNP
rs912098211 1372 dbSNP
rs1248235806 1377 dbSNP
rs1291206816 1390 dbSNP
rs1313059691 1397 dbSNP
rs1205327347 1404 dbSNP
rs1215618187 1405 dbSNP
rs34465504 1405 dbSNP
rs1275740731 1416 dbSNP
rs1436365485 1421 dbSNP
rs7252798 1432 dbSNP
rs1271190989 1436 dbSNP
rs1237175382 1440 dbSNP
rs955159036 1443 dbSNP
rs760732350 1450 dbSNP
rs1028378247 1456 dbSNP
rs975126121 1458 dbSNP
rs1472193204 1460 dbSNP
rs962718114 1468 dbSNP
rs1406755669 1477 dbSNP
rs1421642000 1480 dbSNP
rs1016794983 1487 dbSNP
rs139700594 1488 dbSNP
rs1407070839 1492 dbSNP
rs7252777 1497 dbSNP
rs1355723565 1502 dbSNP
rs1491110981 1503 dbSNP
rs1491314556 1504 dbSNP
rs1034818105 1505 dbSNP
rs1003999921 1506 dbSNP
rs1464749297 1512 dbSNP
rs1338082259 1544 dbSNP
rs1214331792 1547 dbSNP
rs1264189492 1550 dbSNP
rs1430514112 1551 dbSNP
rs1326144994 1552 dbSNP
rs905287499 1553 dbSNP
rs1179016523 1554 dbSNP
rs1441328841 1555 dbSNP
rs1193349269 1557 dbSNP
rs1045448007 1560 dbSNP
rs1474408030 1561 dbSNP
rs1169912067 1570 dbSNP
rs1479629476 1571 dbSNP
rs1429673114 1572 dbSNP
rs565913006 1573 dbSNP
rs1267278948 1582 dbSNP
rs1178240533 1594 dbSNP
rs1401850467 1603 dbSNP
rs946719857 1617 dbSNP
rs1320426196 1619 dbSNP
rs1325170824 1622 dbSNP
rs893839681 1622 dbSNP
rs1284513853 1627 dbSNP
rs562476338 1632 dbSNP
rs547815704 1633 dbSNP
rs1231230773 1635 dbSNP
rs1222132967 1643 dbSNP
rs1260846700 1649 dbSNP
rs1343912474 1650 dbSNP
rs1198302014 1657 dbSNP
rs1324517808 1658 dbSNP
rs1444801992 1661 dbSNP
rs1192778183 1664 dbSNP
rs867102173 1666 dbSNP
rs1481293292 1668 dbSNP
rs185357278 1670 dbSNP
rs1225118768 1677 dbSNP
rs1321097907 1678 dbSNP
rs1300532568 1683 dbSNP
rs1419191667 1684 dbSNP
rs1304272761 1696 dbSNP
rs1368066439 1697 dbSNP
rs1403465756 1699 dbSNP
rs578129963 1703 dbSNP
rs550103543 1708 dbSNP
rs375979786 1715 dbSNP
rs564290530 1716 dbSNP
rs1280941882 1719 dbSNP
rs933712282 1731 dbSNP
rs1215345716 1733 dbSNP
rs545901143 1736 dbSNP
rs985701946 1738 dbSNP
rs1406378629 1749 dbSNP
rs1338222519 1754 dbSNP
rs1490834839 1758 dbSNP
rs1219939394 1759 dbSNP
rs527410931 1760 dbSNP
rs921006374 1765 dbSNP
rs1468600177 1766 dbSNP
rs975598422 1768 dbSNP
rs771775846 1770 dbSNP
rs962348365 1771 dbSNP
rs1164345700 1773 dbSNP
rs1387593502 1776 dbSNP
rs559892809 1787 dbSNP
rs150637284 1788 dbSNP
rs951305494 1800 dbSNP
rs1393505137 1802 dbSNP
rs1330469974 1804 dbSNP
rs1405973148 1808 dbSNP
rs1374272186 1811 dbSNP
rs1178110920 1814 dbSNP
rs1315190225 1816 dbSNP
rs1361016266 1826 dbSNP
rs1242458430 1831 dbSNP
rs775912967 1833 dbSNP
rs1480800219 1834 dbSNP
rs574350372 1855 dbSNP
rs375012402 1865 dbSNP
rs772584634 1866 dbSNP
rs1248655106 1872 dbSNP
rs1003394213 1876 dbSNP
rs905048220 1877 dbSNP
rs1387112821 1881 dbSNP
rs1255161304 1888 dbSNP
rs1164608302 1890 dbSNP
rs1239763695 1895 dbSNP
rs1318640928 1901 dbSNP
rs1322619578 1903 dbSNP
rs753295645 1904 dbSNP
rs1445532934 1909 dbSNP
rs556689124 1909 dbSNP
rs1384294176 1915 dbSNP
rs746436948 1919 dbSNP
rs1316745550 1922 dbSNP
rs1311920719 1923 dbSNP
rs1011442160 1927 dbSNP
rs1449988727 1928 dbSNP
rs1229294663 1929 dbSNP
rs893808605 1930 dbSNP
rs1052443674 1931 dbSNP
rs1204481303 1932 dbSNP
rs1401997509 1933 dbSNP
rs1289817042 1943 dbSNP
rs1455613648 1944 dbSNP
rs1343949441 1951 dbSNP
rs935542098 1956 dbSNP
rs1430852057 1959 dbSNP
rs1158528169 1960 dbSNP
rs890730890 1964 dbSNP
rs1445334808 1965 dbSNP
rs141907469 1968 dbSNP
rs1470516957 1970 dbSNP
rs1387139832 1976 dbSNP
rs1301792190 1978 dbSNP
rs932158747 1978 dbSNP
rs1423458049 1989 dbSNP
rs1276239539 1994 dbSNP
rs1339523689 1996 dbSNP
rs1223961064 2001 dbSNP
rs1265218224 2006 dbSNP
rs1255283414 2015 dbSNP
rs922131336 2026 dbSNP
rs35888903 2027 dbSNP
rs574745752 2027 dbSNP
rs1486686072 2028 dbSNP
rs941115122 2029 dbSNP
rs1192060474 2034 dbSNP
rs1283840078 2038 dbSNP
rs537557802 2040 dbSNP
rs1359598094 2050 dbSNP
rs1456259665 2051 dbSNP
rs1430930091 2056 dbSNP
rs1431050574 2058 dbSNP
rs1174939839 2061 dbSNP
rs543720622 2063 dbSNP
rs576211939 2069 dbSNP
rs1296261622 2070 dbSNP
rs951275840 2075 dbSNP
rs1339499541 2081 dbSNP
rs1285003469 2082 dbSNP
rs1405305799 2082 dbSNP
rs927884346 2105 dbSNP
rs1307996772 2121 dbSNP
rs982465178 2123 dbSNP
rs969241917 2128 dbSNP
rs1384303234 2131 dbSNP
rs1360248671 2135 dbSNP
rs1298168461 2138 dbSNP
rs1225402032 2142 dbSNP
rs1245293345 2142 dbSNP
rs1488365431 2144 dbSNP
rs1425811855 2149 dbSNP
rs1190204471 2157 dbSNP
rs1408346998 2158 dbSNP
rs1440983516 2161 dbSNP
rs1156358235 2168 dbSNP
rs1367598333 2170 dbSNP
rs1425178954 2170 dbSNP
rs1304905753 2171 dbSNP
rs1023928984 2174 dbSNP
rs1435508167 2177 dbSNP
rs1298959404 2178 dbSNP
rs1457419977 2190 dbSNP
rs1373863857 2192 dbSNP
rs1238034309 2193 dbSNP
rs1064126 2203 dbSNP
rs1195544928 2208 dbSNP
rs1360280883 2210 dbSNP
rs796317084 2212 dbSNP
rs193108576 2214 dbSNP
rs539547013 2228 dbSNP
rs1030985080 2237 dbSNP
rs1205734135 2243 dbSNP
rs1233075591 2244 dbSNP
rs1458845362 2245 dbSNP
rs1490492731 2248 dbSNP
rs1236984285 2250 dbSNP
rs999509602 2255 dbSNP
rs773997130 2263 dbSNP
rs770511569 2269 dbSNP
rs61544147 2271 dbSNP
rs1170950894 2282 dbSNP
rs1207552584 2288 dbSNP
rs115649766 2304 dbSNP
rs535795548 2306 dbSNP
rs1038281611 2307 dbSNP
rs1383529429 2315 dbSNP
rs76450366 2316 dbSNP
rs1277957203 2318 dbSNP
rs10568269 2320 dbSNP
rs1215501154 2320 dbSNP
rs1046819732 2322 dbSNP
rs929630443 2324 dbSNP
rs1196292107 2329 dbSNP
rs1257045015 2333 dbSNP
rs927652883 2343 dbSNP
rs982048961 2344 dbSNP
rs1235631198 2353 dbSNP
rs969712786 2356 dbSNP
rs772905955 2359 dbSNP
rs1187073111 2362 dbSNP
rs916388892 2362 dbSNP
rs989331422 2367 dbSNP
rs1170224692 2368 dbSNP
rs1397244214 2375 dbSNP
rs1407204479 2375 dbSNP
rs576162911 2381 dbSNP
rs1339968697 2383 dbSNP
rs1031081167 2386 dbSNP
rs1272433293 2389 dbSNP
rs769126829 2395 dbSNP
rs868028984 2396 dbSNP
rs1421299867 2400 dbSNP
rs7248646 2406 dbSNP
rs996406776 2407 dbSNP
rs1275853209 2409 dbSNP
rs147099397 2420 dbSNP
rs1196593141 2426 dbSNP
rs1450587107 2433 dbSNP
rs1250575029 2436 dbSNP
rs1476717092 2438 dbSNP
rs1037809392 2444 dbSNP
rs1430219953 2450 dbSNP
rs1479101590 2456 dbSNP
rs370279018 2456 dbSNP
rs143223965 2458 dbSNP
rs1256965526 2459 dbSNP
rs1300569236 2464 dbSNP
rs139295159 2472 dbSNP
rs1326049177 2474 dbSNP
rs780099908 2481 dbSNP
rs1046789499 2489 dbSNP
rs1272735289 2489 dbSNP
rs1273603788 2496 dbSNP
rs929766370 2505 dbSNP
rs1288039843 2517 dbSNP
rs1487297001 2518 dbSNP
rs906158841 2522 dbSNP
rs1233136847 2527 dbSNP
rs1046501005 2531 dbSNP
rs1453117618 2532 dbSNP
rs1336473485 2537 dbSNP
rs1211945595 2541 dbSNP
rs1330975829 2545 dbSNP
rs1377340965 2558 dbSNP
rs1470549527 2563 dbSNP
rs1444921330 2565 dbSNP
rs1378975865 2566 dbSNP
rs146909559 2567 dbSNP
rs947973621 2570 dbSNP
rs560144208 2574 dbSNP
rs1385513301 2587 dbSNP
rs1321173968 2590 dbSNP
rs916466682 2603 dbSNP
rs188824115 2605 dbSNP
rs936483986 2607 dbSNP
rs1477653364 2614 dbSNP
rs923811446 2621 dbSNP
rs978134906 2629 dbSNP
rs1183371800 2635 dbSNP
rs184087745 2649 dbSNP
rs954969010 2651 dbSNP
rs975164208 2656 dbSNP
rs1203856498 2658 dbSNP
rs964763941 2666 dbSNP
rs562176753 2669 dbSNP
rs369069519 2671 dbSNP
rs543685054 2673 dbSNP
rs1200456292 2680 dbSNP
rs576370179 2686 dbSNP
rs1006461313 2691 dbSNP
rs1456687825 2692 dbSNP
rs1163091545 2696 dbSNP
rs191522008 2698 dbSNP
rs780051892 2704 dbSNP
rs535258458 2724 dbSNP
rs1373939307 2725 dbSNP
rs1445475356 2731 dbSNP
rs1313339757 2732 dbSNP
rs1026442959 2734 dbSNP
rs1238068591 2735 dbSNP
rs1242307162 2738 dbSNP
rs186628419 2738 dbSNP
rs906293744 2739 dbSNP
rs1200700600 2741 dbSNP
rs1046170485 2743 dbSNP
rs1454750760 2744 dbSNP
rs1452475943 2748 dbSNP
rs947699974 2752 dbSNP
rs1184335790 2754 dbSNP
rs1258846407 2766 dbSNP
rs546484529 2767 dbSNP
rs1187500513 2768 dbSNP
rs1331933556 2772 dbSNP
rs1413638219 2792 dbSNP
rs1467523408 2795 dbSNP
rs79681071 2800 dbSNP
rs936577075 2801 dbSNP
rs764814357 2804 dbSNP
rs923737968 2807 dbSNP
rs554204786 2812 dbSNP
rs1160343031 2828 dbSNP
rs34504742 2830 dbSNP
rs1394172724 2833 dbSNP
rs574863094 2834 dbSNP
rs933394134 2838 dbSNP
rs1220311701 2842 dbSNP
rs1183865980 2849 dbSNP
rs1446079716 2851 dbSNP
rs1211115305 2853 dbSNP
rs1257795532 2853 dbSNP
rs923330395 2859 dbSNP
rs1263117212 2862 dbSNP
rs1479004618 2863 dbSNP
rs974882167 2868 dbSNP
rs556628009 2870 dbSNP
rs1477261691 2871 dbSNP
rs111468221 2873 dbSNP
rs1016256417 2875 dbSNP
rs753648729 2883 dbSNP
rs1286998820 2887 dbSNP
rs538126823 2889 dbSNP
rs1302193263 2895 dbSNP
rs1401596295 2896 dbSNP
rs1215054112 2898 dbSNP
rs1353122448 2900 dbSNP
rs764041478 2902 dbSNP
rs1248515306 2916 dbSNP
rs1377260946 2925 dbSNP
rs1232712160 2927 dbSNP
rs1283749603 2945 dbSNP
rs1026418168 2947 dbSNP
rs1003435658 2948 dbSNP
rs1447054275 2949 dbSNP
rs907398090 2950 dbSNP
rs867620652 2956 dbSNP
rs1300015142 2962 dbSNP
rs1025137822 2970 dbSNP
rs1417755069 2974 dbSNP
rs1174807113 2978 dbSNP
rs550259720 2989 dbSNP
rs1163652047 2996 dbSNP
rs894775899 3013 dbSNP
rs149023502 3019 dbSNP
rs1359597327 3022 dbSNP
rs565656621 3027 dbSNP
rs1342762181 3028 dbSNP
rs1000757677 3033 dbSNP
rs1365805875 3052 dbSNP
rs1386259225 3053 dbSNP
rs3795247 3057 dbSNP
rs1192203590 3058 dbSNP
rs1355982471 3062 dbSNP
rs1042329159 3066 dbSNP
rs933135043 3070 dbSNP
rs566573953 3071 dbSNP
rs923161508 3073 dbSNP
rs1270154051 3077 dbSNP
rs1039525100 3078 dbSNP
rs1319961155 3084 dbSNP
rs1248073563 3086 dbSNP
rs548248570 3087 dbSNP
rs1192653954 3090 dbSNP
rs1238185146 3098 dbSNP
rs1156758849 3106 dbSNP
rs1441016585 3106 dbSNP
rs529775491 3107 dbSNP
rs1407252150 3108 dbSNP
rs909182857 3110 dbSNP
rs1166714642 3117 dbSNP
rs1347921888 3126 dbSNP
rs1457556127 3134 dbSNP
rs759037538 3143 dbSNP
rs370393102 3146 dbSNP
rs1444724483 3153 dbSNP
rs1309137732 3155 dbSNP
rs1339879648 3159 dbSNP
rs773764494 3161 dbSNP
rs1230553039 3165 dbSNP
rs950742991 3166 dbSNP
rs538899960 3167 dbSNP
rs919497453 3168 dbSNP
rs1212618406 3175 dbSNP
rs1258371067 3180 dbSNP
rs1458712017 3182 dbSNP
rs1279854694 3183 dbSNP
rs1398137067 3187 dbSNP
rs981751551 3200 dbSNP
rs770585519 3204 dbSNP
rs1183558990 3215 dbSNP
rs747976296 3217 dbSNP
rs762561527 3218 dbSNP
rs1023137801 3219 dbSNP
rs1012378078 3221 dbSNP
rs1347566963 3233 dbSNP
rs1402785611 3243 dbSNP
rs959127035 3263 dbSNP
rs1410175704 3264 dbSNP
rs34926877 3285 dbSNP
rs1168998055 3286 dbSNP
rs1000512811 3290 dbSNP
rs1477661022 3296 dbSNP
rs1318148405 3297 dbSNP
rs902208523 3298 dbSNP
rs1020481221 3299 dbSNP
rs1235719682 3300 dbSNP
rs1433850617 3300 dbSNP
rs1442497546 3300 dbSNP
rs1491576156 3300 dbSNP
rs1491550755 3301 dbSNP
rs1042688538 3302 dbSNP
rs1194181013 3302 dbSNP
rs1476943607 3302 dbSNP
rs997481400 3303 dbSNP
rs1388781143 3304 dbSNP
rs1416300000 3305 dbSNP
rs901633576 3305 dbSNP
rs1038873942 3306 dbSNP
rs1205575070 3306 dbSNP
rs1400967582 3307 dbSNP
rs943428151 3307 dbSNP
rs1049164077 3310 dbSNP
rs183374456 3310 dbSNP
rs531985478 3311 dbSNP
rs919305267 3311 dbSNP
rs971681989 3312 dbSNP
rs982064102 3312 dbSNP
rs1276377091 3314 dbSNP
rs1439766045 3320 dbSNP
rs916037779 3321 dbSNP
rs1170940841 3323 dbSNP
rs1192729708 3323 dbSNP
rs1247580495 3323 dbSNP
rs1264983717 3323 dbSNP
rs1479031993 3323 dbSNP
rs1487194167 3323 dbSNP
rs763305626 3323 dbSNP
rs76435777 3323 dbSNP
rs991692620 3323 dbSNP
rs1256334377 3324 dbSNP
rs1317188339 3324 dbSNP
rs1491497977 3324 dbSNP
rs1331365402 3331 dbSNP
rs1491509808 3331 dbSNP
rs1491164983 3332 dbSNP
rs1346532348 3342 dbSNP
rs1240716982 3346 dbSNP
rs1288149412 3351 dbSNP
rs957546768 3370 dbSNP
rs1204377147 3390 dbSNP
rs1317033540 3401 dbSNP
rs1290833483 3402 dbSNP
rs1032078947 3404 dbSNP
rs1283880023 3406 dbSNP
rs1000649971 3407 dbSNP
rs1440412331 3410 dbSNP
rs1181033752 3419 dbSNP
rs1220840594 3420 dbSNP
rs1364955493 3424 dbSNP
rs1453456632 3425 dbSNP
rs1164245729 3431 dbSNP
rs1292418375 3442 dbSNP
rs564761216 3446 dbSNP
rs1442223053 3448 dbSNP
rs1406678514 3449 dbSNP
rs1010463956 3451 dbSNP
rs576625866 3452 dbSNP
rs1323501189 3458 dbSNP
rs1423681897 3459 dbSNP
rs1369596600 3461 dbSNP
rs193145493 3462 dbSNP
rs1311331141 3464 dbSNP
rs1020619877 3467 dbSNP
rs572571346 3486 dbSNP
rs1172437190 3487 dbSNP
rs1200642975 3487 dbSNP
rs1358207446 3487 dbSNP
rs1458263269 3487 dbSNP
rs901772214 3487 dbSNP
rs1418968246 3488 dbSNP
rs74167876 3489 dbSNP
rs1370509467 3495 dbSNP
rs1007334458 3498 dbSNP
rs887646303 3502 dbSNP
rs1049132985 3503 dbSNP
rs929396603 3510 dbSNP
rs1332737312 3514 dbSNP
rs1431930796 3516 dbSNP
rs1390681484 3525 dbSNP
rs1313361634 3526 dbSNP
rs897787775 3528 dbSNP
rs1424629586 3529 dbSNP
rs1045745599 3530 dbSNP
rs1292866090 3534 dbSNP
rs1318930394 3541 dbSNP
rs144910218 3544 dbSNP
rs1249625469 3550 dbSNP
rs1436142126 3557 dbSNP
rs1441556695 3563 dbSNP
rs916143855 3575 dbSNP
rs991767032 3581 dbSNP
rs936144285 3585 dbSNP
rs575026043 3588 dbSNP
rs926146802 3589 dbSNP
rs1457181794 3594 dbSNP
rs1424817217 3595 dbSNP
rs1477919834 3597 dbSNP
rs1172377637 3606 dbSNP
rs1370784878 3613 dbSNP
rs1461096660 3615 dbSNP
rs1303351016 3628 dbSNP
rs4330044 3647 dbSNP
rs1412674391 3653 dbSNP
rs1311991053 3664 dbSNP
rs1340905158 3667 dbSNP
rs966493345 3670 dbSNP
rs1293781579 3674 dbSNP
rs1306992688 3676 dbSNP
rs1234105948 3682 dbSNP
rs369409754 3684 dbSNP
rs1021010429 3687 dbSNP
rs1310374576 3689 dbSNP
rs1264261921 3695 dbSNP
rs1489482164 3698 dbSNP
rs1195379560 3702 dbSNP
rs1427372574 3703 dbSNP
rs1176213149 3705 dbSNP
rs975792148 3707 dbSNP
rs1432738833 3710 dbSNP
rs1172954352 3715 dbSNP
rs189007199 3716 dbSNP
rs769443753 3721 dbSNP
rs1306682789 3725 dbSNP
rs1445554306 3729 dbSNP
rs1361588789 3732 dbSNP
rs1407373481 3748 dbSNP
rs75191519 3749 dbSNP
rs1368877420 3752 dbSNP
rs558790355 3755 dbSNP
rs1287434525 3756 dbSNP
rs887573767 3761 dbSNP
rs1359106748 3763 dbSNP
rs1027453609 3765 dbSNP
rs1485311271 3765 dbSNP
rs765700431 3765 dbSNP
rs897929838 3765 dbSNP
rs57484704 3766 dbSNP
rs1452094985 3767 dbSNP
rs867086704 3768 dbSNP
rs985239084 3769 dbSNP
rs958741653 3775 dbSNP
rs1156609361 3778 dbSNP
rs1378515005 3782 dbSNP
rs1056052914 3792 dbSNP
rs1458545821 3795 dbSNP
rs1295516707 3796 dbSNP
rs1034735507 3797 dbSNP
rs1368856165 3798 dbSNP
rs183574807 3799 dbSNP
rs1258453542 3801 dbSNP
rs1183394981 3808 dbSNP
rs926075171 3817 dbSNP
rs1379820789 3827 dbSNP
rs970642309 3827 dbSNP
rs1222582127 3838 dbSNP
rs1306684780 3845 dbSNP
rs1482126787 3848 dbSNP
rs1255373818 3849 dbSNP
rs977598724 3852 dbSNP
rs1221834454 3855 dbSNP
rs1274739164 3857 dbSNP
rs1217209829 3860 dbSNP
rs945096016 3861 dbSNP
rs1238277054 3862 dbSNP
rs1024835515 3865 dbSNP
rs1175417750 3865 dbSNP
rs1283246473 3865 dbSNP
rs1239066098 3868 dbSNP
rs759247276 3870 dbSNP
rs1009390346 3871 dbSNP
rs1392605037 3878 dbSNP
rs913632603 3878 dbSNP
rs976271834 3881 dbSNP
rs965738749 3887 dbSNP
rs1314358708 3891 dbSNP
rs1017228279 3895 dbSNP
rs1298166044 3896 dbSNP
rs985978368 3897 dbSNP
rs115218875 3900 dbSNP
rs1290006330 3901 dbSNP
rs1422033058 3904 dbSNP
rs1027423881 3907 dbSNP
rs1232334058 3907 dbSNP
rs1332155871 3907 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 163227.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuuguauugUGCCUAUUGGAGa 5'
                   || | ||||||| 
Target 5' ---------ACUG-UAACCUCc 3'
1 - 12
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177609. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_2_11 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuuguauuGUGCCUAUUGGAGa 5'
                  ||| | ||||||| 
Target 5' ucucggcuCACUG-UAACCUCc 3'
1 - 21
Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760591. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000358296.6 | 3UTR | ACUGUAACCUCCACCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-655-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080691 KIAA1468 KIAA1468 2 2
MIRT095086 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT122450 SMIM13 small integral membrane protein 13 2 2
MIRT214635 SMAD5 SMAD family member 5 2 4
MIRT268267 CCND1 cyclin D1 2 2
MIRT312418 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT329008 DSTN destrin, actin depolymerizing factor 2 2
MIRT329824 PDCD4 programmed cell death 4 2 4
MIRT389635 LRRC58 leucine rich repeat containing 58 2 6
MIRT443969 FAM198B family with sequence similarity 198 member B 2 2
MIRT444080 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT444886 TMEM196 transmembrane protein 196 2 2
MIRT445506 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT446292 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446462 THAP1 THAP domain containing 1 2 2
MIRT446472 THUMPD3 THUMP domain containing 3 2 2
MIRT447413 MED21 mediator complex subunit 21 2 2
MIRT447491 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT448965 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT449602 INIP INTS3 and NABP interacting protein 2 2
MIRT449607 PRPF4 pre-mRNA processing factor 4 2 2
MIRT449737 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT451668 KRT8 keratin 8 2 4
MIRT452424 QDPR quinoid dihydropteridine reductase 2 2
MIRT455187 AGTRAP angiotensin II receptor associated protein 2 2
MIRT456059 SLC25A28 solute carrier family 25 member 28 2 2
MIRT456488 SERAC1 serine active site containing 1 2 2
MIRT456631 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT459621 SLC25A33 solute carrier family 25 member 33 2 2
MIRT461162 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461990 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT463149 ZNF385A zinc finger protein 385A 2 4
MIRT463465 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463801 XPOT exportin for tRNA 2 2
MIRT464010 WDR26 WD repeat domain 26 2 2
MIRT465302 TRIB1 tribbles pseudokinase 1 2 2
MIRT468837 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT469132 RNF126 ring finger protein 126 2 2
MIRT469244 RHOB ras homolog family member B 2 2
MIRT472414 NCKAP1 NCK associated protein 1 2 2
MIRT472432 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT472808 MTMR12 myotubularin related protein 12 2 2
MIRT477893 DVL3 dishevelled segment polarity protein 3 2 4
MIRT477963 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT479258 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479718 CCNF cyclin F 2 2
MIRT480231 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT482600 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483096 TFPI tissue factor pathway inhibitor 2 2
MIRT484644 TBC1D5 TBC1 domain family member 5 2 4
MIRT488899 CLDND1 claudin domain containing 1 2 2
MIRT491954 VPS52 VPS52, GARP complex subunit 2 2
MIRT496937 LBR lamin B receptor 2 2
MIRT498546 TMEM30B transmembrane protein 30B 2 2
MIRT501778 NRBF2 nuclear receptor binding factor 2 2 6
MIRT516286 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516351 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516751 ZNF100 zinc finger protein 100 2 2
MIRT517939 ZNF431 zinc finger protein 431 2 4
MIRT518295 ZNF514 zinc finger protein 514 2 4
MIRT518515 CASP10 caspase 10 2 2
MIRT519017 NOA1 nitric oxide associated 1 2 2
MIRT519171 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519470 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT521029 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521251 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT521682 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT529386 SKP1 S-phase kinase associated protein 1 2 2
MIRT545507 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT549655 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT551041 CTSB cathepsin B 2 4
MIRT551441 ZNF490 zinc finger protein 490 2 4
MIRT554778 RHEBP1 RHEB pseudogene 1 2 4
MIRT565793 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT566727 MSL2 MSL complex subunit 2 2 2
MIRT574668 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT610128 DENND5B DENN domain containing 5B 2 2
MIRT624919 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT641830 TRIM71 tripartite motif containing 71 2 2
MIRT662165 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT667150 NRXN3 neurexin 3 2 2
MIRT689085 ADNP2 ADNP homeobox 2 2 2
MIRT696322 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT699062 SNX4 sorting nexin 4 2 2
MIRT703229 GOLGA1 golgin A1 2 2
MIRT705743 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT706087 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT709288 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT711457 RNF145 ring finger protein 145 2 2
MIRT714708 PPP3CC protein phosphatase 3 catalytic subunit gamma 2 2
MIRT719871 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-655 Gefitinib approved 123631 Quantitative real-time PCR lung adenocarcinoma cells 24258346 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-655 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-655 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-655 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-655-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-655-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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