pre-miRNA Information
pre-miRNA hsa-mir-4524a   
Genomic Coordinates chr17: 69099564 - 69099632
Description Homo sapiens miR-4524a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4524a-5p
Sequence 6| AUAGCAGCAUGAACCUGUCUCA |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322445998 8 dbSNP
rs1350790266 13 dbSNP
rs1263495678 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TRIM35   
Synonyms HLS5, MAIR
Description tripartite motif containing 35
Transcript NM_171982   
Expression
Putative miRNA Targets on TRIM35
3'UTR of TRIM35
(miRNA target sites are highlighted)
>TRIM35|NM_171982|3'UTR
   1 GCTGGCCCGGGGCTGCCCCGGTCTTGTGCCACAGCACTGTTTTCTTTCTGCCCTCTTCCTAATGCCCACACTGCTTGGGC
  81 ACTATTGCGCCCCTGCCTCCTTGCCAGGCTCTTCCTCCTGTCCTGCCTGGTCCTTTTCCATGACTCCAGGCTGTGCCTCT
 161 CTCCATGTTTGGTCCCTTCTGTGCCCATGGTCAGGAGCTATTCGGGTGGCACCTCGCTGGCCAGGCTCTCCCGAGTCGTG
 241 GCACCTCCACAATGTGAATTTTCTGAATCCCTATTCCAGGATTTCTGGGAATAATGTTTACTTCTAGAATGGGCCTGTTG
 321 TAAACCATCTCATCGAGGTGTGGTAAAGCCATTGGATGAGGAGGGGACTGCCATGGAAAGGAGAGTTTGTTACTTACGGT
 401 TCTGAGAGGAGGGGCCACATAGGAAAGCCCCACGGTGGGTCAGAAGGCGGAAGGAGGGAGGGGAACGTGTGGGCAAGAGA
 481 CTTCCTCTGGTTTCCTCAGGAGGAAATGGGCAAGGCAGAGTAAGCAGGGGAGACAGGTTTAAGGGTAGCTGGCTTGAGTA
 561 ATTTCAGTGGCTCTCAGGATAGGGGCTGCCCTTTTTGTCTGATACCTGGCCCCGGGATAGTCAGGACAGGTGAATGTTGG
 641 CCTGGGGTGTGACAGCCCTGGGAGAGCCATGTGAAGGAGGCAGCTGGCGCCATCGCTCCGGATTAGTTGGTTTCCATAGG
 721 AAAGGCATGCTTTCAGCCAGATGCTTGCCATCTCTAGGGATTGGGGGATTGGCTAGCCTGGGAGGATCAGTCTGTCCAGG
 801 TCAGCGAGGCCCCAGATACCAGAGCATCAAGAGTACAGGAAATACAGTTAATGCAGGGCCTCTGTGTGGCTGGATCCTCC
 881 GTCTCCATCAGATCAGCTCTGATTGATCTATTCTTGCACGATTTCCTCTGAACACAGGGTTCCAGAGTACTTAAACACAA
 961 CATTTTTTAAATCGTGATTTCGGCCTATTTCCTTGCCAGGCCTGTTTCCCCACCAGGAAATGAGATAGGAGGACTGGATG
1041 AGGATGTCCTGTTATAGTTGCTGTGGAGGAAGTTCCTCTGGTTAATTCTCATCAGCGTCTGCAGAAAAGAAGGAAAGAGG
1121 GCACCCTTTTCAGTTGGGAAGAAAGGAGAGGGGTGGCGCCATGGACGTGGCCCTAAACGCTGTGGGAGAGGGAAGAGGAG
1201 GCTGGGCCTCGCTGCCCTCTTGTCTCTGCTGACTTCAGCCTGGTCATGCTTGCTCTGCCACTTGCGATTTCATCCCTAAT
1281 TTCTTCCTCCACCATGCCTGCAGACTTTTCCCTGGGCTTGTTTTTTCTCGCACATCTCTGAAGAGTTTTTAATCTTCAGC
1361 TCATCATGTCCCAGGAAGTGGCATCATAAAAGGAAATATTTTTTTTTCCTAGGAGCAGTGTTAAAATCTGGGTCACATTC
1441 CTGACCAAGGACAGCATCCTGCCTTCTGCCCATCCCCTTCAGTTCACAAAAGCTGACATTTTAAACAAATCATGACTCAC
1521 ACGTATTAATTGGTTATAAATATGTTGTGTACACTGGTTAGATAAAACTTAAGGCCACAAGGAGGGCCCAGGTAGGCGAT
1601 GTCAGTGTGTGAAGGGGCTGGATTGGGCGTGGTGAGGATGTTGGCAAACCAGTGCATGCACCTGGTTGGAAGATGCTCAG
1681 CCTCACAAAAGCTCCAAGCCCTTTGGGAGCCAAAGTGTCTGAGAGTGTGACCCTCTCCTGTAAAGTATTTATCCCACCCA
1761 TTAATATAATTTCTGTATAATAAACTTGACCTGAAATTATTTCATTCTTTATATTAAACTTTTAAAAATGTTTTTTATTT
1841 TCACCTTAGATATGGGAAGAGTTTTTTTTTTTTTTTTTTTTTTAACAGGATAACTTGAGCAGGCTAGGCCTCTTAAAAAA
1921 AAATTTGAGCTAAAACTCATTTTTCTTTTGGCATTTTCTTTTCAATGTTCTTATAAGCAAAGTTCATCCATGTTGTAGCA
2001 TGTGTTCAACTTTATTTTTTCATCGGGTAATATTCCATTGTATGGAATGGTAGTACTACATTTTATTTATCATGCATCGA
2081 TTGGTGGACATTTGGATCGTTTCTACTTCTTGACTATTATACATAATGCTGCTAGGAACTTTTGTGTATGAGTTTTTGTG
2161 TGGACATATGTTTTCATTTCTCTTTGGTATATGCCTGGGAGCAGATTTGCTGGATCATATGAAACTCTATTTAACCCTTG
2241 AGGGACTCCCAAACTGTTTTCCAATGTGGTGACACAATTTTATATCCCATCAACAGGGCATGAGGGTTCTGATGACTCCA
2321 CATCCCTCAGTGCTTTTTATTATCTATCTTTTAACTTAGCCATCCTAGTAGGGGTAATGTGGCATCTCATTGTGATTTTG
2401 GTTTGCATTTCCCTGATGGCGAATGATATTGAGCATCTTTTCATGAGCTTATTGGCCATTTGCATATCTTCTTAGGACAG
2481 CTATCTTTAGATCACTTGCTCATTTTTTAATTGGGTTATTTGTCTTTTTATTATTGAGTTGTAAGAGTCCTTTTATAGCC
2561 TGGCACAAGTCCCTTTAACTGGTATATGATTATAAAATTTTTCTCCGTGAGCTGTTTCATTTCCTTGATGATGTCCTTTG
2641 AAATACTAAAGCTTTTAATTTTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acUCUGUCCAAGUACGACGAUa 5'
            | |||   | ||||||||| 
Target 5' ttATACA---TAATGCTGCTAg 3'
2117 - 2135 157.00 -11.10
2
miRNA  3' acUCUGUCCAAGU----A-CGA-CGAua 5'
            |||||||||:|    | ||| |||  
Target 5' ggAGACAGGTTTAAGGGTAGCTGGCTtg 3'
529 - 556 122.00 -21.42
3
miRNA  3' acUCUGUCCAAGUACG-ACGAua 5'
            || | || |||||| ||||  
Target 5' tcAGCCTGG-TCATGCTTGCTct 3'
1235 - 1256 119.00 -13.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30118416 19 COSMIC
COSN28850349 28 COSMIC
COSN28868470 89 COSMIC
COSN30526890 117 COSMIC
COSN30538084 134 COSMIC
COSN1363259 288 COSMIC
COSN505886 1072 COSMIC
COSN22052754 1075 COSMIC
COSN18719708 1412 COSMIC
COSN26785222 1645 COSMIC
COSN15664599 1648 COSMIC
COSN20091775 1837 COSMIC
COSN20105323 1872 COSMIC
COSN9260245 2324 COSMIC
COSN21751313 2418 COSMIC
COSN21332277 2559 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1412840513 2 dbSNP
rs529692872 5 dbSNP
rs749203501 6 dbSNP
rs777679871 7 dbSNP
rs188399705 8 dbSNP
rs372337575 9 dbSNP
rs1175234838 11 dbSNP
rs780152117 12 dbSNP
rs1387200552 15 dbSNP
rs758641007 16 dbSNP
rs1222405158 17 dbSNP
rs112723421 19 dbSNP
rs368728206 20 dbSNP
rs373750792 23 dbSNP
rs989709614 24 dbSNP
rs754299484 34 dbSNP
rs764597989 38 dbSNP
rs760964927 39 dbSNP
rs1373335234 40 dbSNP
rs758027068 48 dbSNP
rs1275893992 51 dbSNP
rs1223562978 53 dbSNP
rs374039704 55 dbSNP
rs1450197807 61 dbSNP
rs954444391 62 dbSNP
rs1030152247 65 dbSNP
rs1281155191 68 dbSNP
rs1472336726 71 dbSNP
rs1001899902 73 dbSNP
rs995959683 82 dbSNP
rs900467676 84 dbSNP
rs559141942 88 dbSNP
rs867540583 89 dbSNP
rs562895274 90 dbSNP
rs1392848725 91 dbSNP
rs1045741551 92 dbSNP
rs1349793936 93 dbSNP
rs1407501553 95 dbSNP
rs946118592 96 dbSNP
rs1294573202 98 dbSNP
rs1047038414 101 dbSNP
rs1307036808 105 dbSNP
rs1224582461 108 dbSNP
rs913349759 111 dbSNP
rs1263250419 117 dbSNP
rs1354706928 122 dbSNP
rs747515049 125 dbSNP
rs936203254 127 dbSNP
rs546373401 133 dbSNP
rs1046638550 134 dbSNP
rs1180165594 140 dbSNP
rs1259725214 147 dbSNP
rs1424430197 148 dbSNP
rs975031031 151 dbSNP
rs577060739 156 dbSNP
rs966729760 157 dbSNP
rs990152546 167 dbSNP
rs527452889 171 dbSNP
rs1291583949 174 dbSNP
rs1168958473 184 dbSNP
rs1457285413 190 dbSNP
rs1369928422 195 dbSNP
rs936915887 203 dbSNP
rs1345743274 204 dbSNP
rs912229342 205 dbSNP
rs1455687502 206 dbSNP
rs1411375400 207 dbSNP
rs1231122905 209 dbSNP
rs977715725 212 dbSNP
rs1481551251 215 dbSNP
rs986487938 216 dbSNP
rs951096169 231 dbSNP
rs554026480 232 dbSNP
rs534246820 233 dbSNP
rs1199937717 237 dbSNP
rs574464084 238 dbSNP
rs1430500442 242 dbSNP
rs1189403205 244 dbSNP
rs962574601 245 dbSNP
rs1326453706 252 dbSNP
rs1267002060 253 dbSNP
rs1447369092 259 dbSNP
rs866711173 260 dbSNP
rs138361672 270 dbSNP
rs1359661625 271 dbSNP
rs1223684504 281 dbSNP
rs778199691 294 dbSNP
rs1300531965 296 dbSNP
rs1386743724 297 dbSNP
rs1435388953 299 dbSNP
rs1347008471 300 dbSNP
rs1298868263 309 dbSNP
rs1364928991 320 dbSNP
rs1226572235 327 dbSNP
rs1304126981 329 dbSNP
rs1386029640 332 dbSNP
rs974427211 334 dbSNP
rs4279551 335 dbSNP
rs1466280427 337 dbSNP
rs1209605926 340 dbSNP
rs569335460 344 dbSNP
rs1006572464 352 dbSNP
rs950648259 358 dbSNP
rs1024249554 360 dbSNP
rs150694781 361 dbSNP
rs906492212 373 dbSNP
rs1046524358 383 dbSNP
rs1457246874 385 dbSNP
rs538821478 390 dbSNP
rs1177254335 397 dbSNP
rs1433401267 397 dbSNP
rs1010207829 398 dbSNP
rs891860447 406 dbSNP
rs141973146 408 dbSNP
rs1175687892 417 dbSNP
rs936134076 419 dbSNP
rs184062056 420 dbSNP
rs1264384412 421 dbSNP
rs1187208393 426 dbSNP
rs1039650565 433 dbSNP
rs944922027 434 dbSNP
rs924209731 442 dbSNP
rs1246802496 445 dbSNP
rs1042078431 448 dbSNP
rs1253811901 449 dbSNP
rs530035616 454 dbSNP
rs986435710 458 dbSNP
rs929646249 461 dbSNP
rs191835953 463 dbSNP
rs1307853129 465 dbSNP
rs1164988986 466 dbSNP
rs1350841450 468 dbSNP
rs918298709 483 dbSNP
rs148165351 484 dbSNP
rs1352860169 489 dbSNP
rs962810382 490 dbSNP
rs1034182324 491 dbSNP
rs373657290 512 dbSNP
rs529375631 516 dbSNP
rs971260862 520 dbSNP
rs1290779617 523 dbSNP
rs1454629730 532 dbSNP
rs964472310 549 dbSNP
rs564981621 553 dbSNP
rs1483329313 558 dbSNP
rs1249022754 566 dbSNP
rs112570847 572 dbSNP
rs1462737195 575 dbSNP
rs1375079534 576 dbSNP
rs1182097110 588 dbSNP
rs1412599555 589 dbSNP
rs1405206609 590 dbSNP
rs1162019397 597 dbSNP
rs1167100972 597 dbSNP
rs1010155577 601 dbSNP
rs891806823 610 dbSNP
rs1033461691 613 dbSNP
rs1000284089 614 dbSNP
rs1386434285 616 dbSNP
rs1186016518 620 dbSNP
rs900608344 624 dbSNP
rs1253545842 636 dbSNP
rs190210415 640 dbSNP
rs375121287 649 dbSNP
rs890688192 652 dbSNP
rs1048011281 661 dbSNP
rs1276465868 664 dbSNP
rs11557589 668 dbSNP
rs1272312660 670 dbSNP
rs562078340 670 dbSNP
rs1443696883 688 dbSNP
rs1210198133 689 dbSNP
rs540491106 691 dbSNP
rs574801244 692 dbSNP
rs185366880 694 dbSNP
rs970729815 695 dbSNP
rs1024955869 697 dbSNP
rs1392455888 697 dbSNP
rs145840743 699 dbSNP
rs895218883 700 dbSNP
rs1312107929 717 dbSNP
rs941099623 720 dbSNP
rs543676316 724 dbSNP
rs1306503632 727 dbSNP
rs1322730167 728 dbSNP
rs1227375449 729 dbSNP
rs1295397550 732 dbSNP
rs1429487736 734 dbSNP
rs1001040228 742 dbSNP
rs1219352616 744 dbSNP
rs1366625018 760 dbSNP
rs558988975 761 dbSNP
rs971210099 767 dbSNP
rs1248200542 772 dbSNP
rs539158141 784 dbSNP
rs1371892499 788 dbSNP
rs1472128373 788 dbSNP
rs933547811 790 dbSNP
rs576377223 792 dbSNP
rs955996650 794 dbSNP
rs867664624 805 dbSNP
rs1172682746 806 dbSNP
rs193209865 808 dbSNP
rs1253498417 809 dbSNP
rs1202641973 812 dbSNP
rs1434140707 819 dbSNP
rs553216319 824 dbSNP
rs536506959 830 dbSNP
rs1332553127 836 dbSNP
rs964795149 846 dbSNP
rs1437151676 852 dbSNP
rs1274111782 855 dbSNP
rs1292305668 867 dbSNP
rs984907492 880 dbSNP
rs1268443179 881 dbSNP
rs929161534 887 dbSNP
rs1208549164 889 dbSNP
rs919062860 899 dbSNP
rs981374357 905 dbSNP
rs971285205 908 dbSNP
rs879193702 910 dbSNP
rs1479534553 914 dbSNP
rs1239884054 919 dbSNP
rs1018124409 920 dbSNP
rs1286648831 924 dbSNP
rs990828789 926 dbSNP
rs1392626871 938 dbSNP
rs1405682666 939 dbSNP
rs959761896 945 dbSNP
rs1343562812 960 dbSNP
rs1032431779 963 dbSNP
rs761455947 964 dbSNP
rs1288406039 972 dbSNP
rs111339400 973 dbSNP
rs188815263 974 dbSNP
rs111738517 975 dbSNP
rs1358973933 976 dbSNP
rs550643465 979 dbSNP
rs28517329 981 dbSNP
rs1489995749 982 dbSNP
rs902093758 987 dbSNP
rs1038013375 993 dbSNP
rs941043604 995 dbSNP
rs762613503 998 dbSNP
rs1044135205 1003 dbSNP
rs1038712886 1004 dbSNP
rs949837917 1008 dbSNP
rs571180882 1009 dbSNP
rs1473043831 1010 dbSNP
rs1453819959 1012 dbSNP
rs1413623268 1015 dbSNP
rs917078263 1026 dbSNP
rs988629228 1037 dbSNP
rs1179556984 1055 dbSNP
rs1431577241 1055 dbSNP
rs955970154 1058 dbSNP
rs1472069317 1075 dbSNP
rs1389160831 1078 dbSNP
rs774954238 1083 dbSNP
rs925874889 1092 dbSNP
rs1246046408 1093 dbSNP
rs1269248677 1095 dbSNP
rs978761172 1096 dbSNP
rs1200769589 1097 dbSNP
rs1485015030 1099 dbSNP
rs1482804946 1131 dbSNP
rs965075448 1134 dbSNP
rs373700110 1145 dbSNP
rs1449745291 1150 dbSNP
rs551031134 1157 dbSNP
rs1443195203 1158 dbSNP
rs1048816267 1161 dbSNP
rs769330851 1166 dbSNP
rs868048088 1167 dbSNP
rs1389474428 1168 dbSNP
rs954813329 1171 dbSNP
rs1460060776 1175 dbSNP
rs182146891 1178 dbSNP
rs993694074 1179 dbSNP
rs1266376762 1191 dbSNP
rs1227953472 1198 dbSNP
rs1334205260 1202 dbSNP
rs949982724 1206 dbSNP
rs796862323 1210 dbSNP
rs560272491 1211 dbSNP
rs1038363304 1217 dbSNP
rs1005185617 1225 dbSNP
rs112213072 1226 dbSNP
rs1257859955 1228 dbSNP
rs1345760254 1232 dbSNP
rs140657160 1238 dbSNP
rs1330928787 1247 dbSNP
rs1319557794 1259 dbSNP
rs1384484920 1265 dbSNP
rs1032867362 1266 dbSNP
rs1188930186 1268 dbSNP
rs1156319231 1272 dbSNP
rs905520772 1274 dbSNP
rs1456341267 1288 dbSNP
rs979436413 1289 dbSNP
rs1465061239 1292 dbSNP
rs1044079458 1299 dbSNP
rs1390382206 1311 dbSNP
rs949787438 1314 dbSNP
rs1437778180 1316 dbSNP
rs917026067 1320 dbSNP
rs1321618805 1322 dbSNP
rs1476900612 1327 dbSNP
rs76599809 1330 dbSNP
rs1193791009 1331 dbSNP
rs1466208607 1338 dbSNP
rs530276761 1344 dbSNP
rs1222978596 1351 dbSNP
rs1261542058 1357 dbSNP
rs934506832 1361 dbSNP
rs775878989 1363 dbSNP
rs997728539 1364 dbSNP
rs1484730195 1365 dbSNP
rs1363112297 1366 dbSNP
rs1302184138 1367 dbSNP
rs1284910194 1371 dbSNP
rs1419973548 1381 dbSNP
rs1362041738 1383 dbSNP
rs561612745 1385 dbSNP
rs902144577 1386 dbSNP
rs1156748305 1388 dbSNP
rs1418222106 1390 dbSNP
rs1267961166 1392 dbSNP
rs1425800210 1395 dbSNP
rs1017765706 1398 dbSNP
rs1481476469 1407 dbSNP
rs1413786233 1408 dbSNP
rs752293106 1408 dbSNP
rs1457464129 1411 dbSNP
rs979094564 1412 dbSNP
rs943331972 1416 dbSNP
rs1350033630 1417 dbSNP
rs1198757478 1420 dbSNP
rs1488771087 1437 dbSNP
rs1344978117 1441 dbSNP
rs1262713887 1443 dbSNP
rs1214100157 1444 dbSNP
rs771743628 1446 dbSNP
rs1316645325 1450 dbSNP
rs910551089 1451 dbSNP
rs759157646 1453 dbSNP
rs1344139262 1458 dbSNP
rs1282144192 1461 dbSNP
rs1400075415 1463 dbSNP
rs60238110 1466 dbSNP
rs1404461997 1467 dbSNP
rs987491307 1468 dbSNP
rs1286696998 1469 dbSNP
rs887517078 1470 dbSNP
rs1271155363 1477 dbSNP
rs761234731 1480 dbSNP
rs1049303877 1487 dbSNP
rs993134940 1496 dbSNP
rs191519722 1512 dbSNP
rs1490160667 1521 dbSNP
rs75849721 1522 dbSNP
rs1433678976 1523 dbSNP
rs1359273567 1527 dbSNP
rs1472595189 1529 dbSNP
rs1026420449 1533 dbSNP
rs1335775094 1541 dbSNP
rs949945038 1544 dbSNP
rs915863184 1548 dbSNP
rs112774263 1550 dbSNP
rs1055617580 1554 dbSNP
rs1424616116 1555 dbSNP
rs972221547 1557 dbSNP
rs545480663 1562 dbSNP
rs935854619 1583 dbSNP
rs1372500168 1587 dbSNP
rs1410498286 1588 dbSNP
rs138892684 1597 dbSNP
rs112061779 1598 dbSNP
rs1388225830 1614 dbSNP
rs540251112 1619 dbSNP
rs1229873842 1623 dbSNP
rs1461824087 1628 dbSNP
rs558100728 1629 dbSNP
rs1013890113 1632 dbSNP
rs913903378 1638 dbSNP
rs1483131290 1650 dbSNP
rs557197090 1653 dbSNP
rs1230869907 1657 dbSNP
rs1484041946 1659 dbSNP
rs868496392 1662 dbSNP
rs1386250305 1675 dbSNP
rs1444328330 1677 dbSNP
rs772641088 1680 dbSNP
rs1052805201 1684 dbSNP
rs934477033 1687 dbSNP
rs1207765178 1688 dbSNP
rs186906901 1694 dbSNP
rs1042931372 1695 dbSNP
rs1381788211 1699 dbSNP
rs943260358 1705 dbSNP
rs571185713 1717 dbSNP
rs1379247936 1721 dbSNP
rs1299781897 1723 dbSNP
rs1342756006 1726 dbSNP
rs1213869046 1731 dbSNP
rs1027372513 1732 dbSNP
rs1313369994 1737 dbSNP
rs1285461477 1738 dbSNP
rs1445269283 1744 dbSNP
rs76851225 1745 dbSNP
rs1308311992 1747 dbSNP
rs773679812 1748 dbSNP
rs1368548701 1754 dbSNP
rs1250497393 1756 dbSNP
rs1476042619 1760 dbSNP
rs1167807237 1765 dbSNP
rs1417468415 1770 dbSNP
rs987438996 1775 dbSNP
rs141234666 1777 dbSNP
rs1045416962 1789 dbSNP
rs1450242846 1799 dbSNP
rs1322326285 1803 dbSNP
rs1365609986 1811 dbSNP
rs1415971336 1819 dbSNP
rs1268284578 1821 dbSNP
rs145155391 1822 dbSNP
rs1262166941 1829 dbSNP
rs1472561670 1830 dbSNP
rs1013956176 1833 dbSNP
rs1233643810 1837 dbSNP
rs894371564 1841 dbSNP
rs1240852687 1842 dbSNP
rs77203675 1843 dbSNP
rs368531184 1853 dbSNP
rs1225508915 1861 dbSNP
rs1482273952 1862 dbSNP
rs972553185 1862 dbSNP
rs548708187 1863 dbSNP
rs1161558313 1864 dbSNP
rs1399878880 1866 dbSNP
rs530294208 1866 dbSNP
rs935817519 1867 dbSNP
rs1324032355 1868 dbSNP
rs1351512673 1868 dbSNP
rs561345805 1869 dbSNP
rs1343053797 1871 dbSNP
rs925784113 1871 dbSNP
rs1041574510 1872 dbSNP
rs538994660 1873 dbSNP
rs551221354 1873 dbSNP
rs1226096636 1880 dbSNP
rs1377863730 1882 dbSNP
rs1288583274 1883 dbSNP
rs1184677300 1884 dbSNP
rs1223824493 1884 dbSNP
rs1268275690 1884 dbSNP
rs1348781420 1884 dbSNP
rs1453856713 1884 dbSNP
rs1469472021 1884 dbSNP
rs1479462025 1884 dbSNP
rs34388696 1884 dbSNP
rs374374994 1884 dbSNP
rs397891279 1884 dbSNP
rs397892940 1884 dbSNP
rs770339097 1884 dbSNP
rs778357845 1884 dbSNP
rs1329209924 1885 dbSNP
rs1236369453 1886 dbSNP
rs1334775352 1886 dbSNP
rs1278174294 1887 dbSNP
rs1358829448 1889 dbSNP
rs1411340932 1890 dbSNP
rs531120202 1892 dbSNP
rs10098291 1893 dbSNP
rs1489898314 1894 dbSNP
rs1207339288 1901 dbSNP
rs1251573349 1906 dbSNP
rs1437489861 1910 dbSNP
rs141707933 1924 dbSNP
rs976037725 1924 dbSNP
rs1162916416 1925 dbSNP
rs1383300459 1927 dbSNP
rs966036678 1928 dbSNP
rs1167968692 1929 dbSNP
rs986797045 1940 dbSNP
rs1335715453 1945 dbSNP
rs1385505700 1952 dbSNP
rs1453828218 1958 dbSNP
rs774879974 1974 dbSNP
rs980992921 1979 dbSNP
rs1357894565 1980 dbSNP
rs1162652643 1982 dbSNP
rs952206956 1990 dbSNP
rs1412873788 2011 dbSNP
rs768979153 2015 dbSNP
rs1025197542 2020 dbSNP
rs993699143 2021 dbSNP
rs545420675 2024 dbSNP
rs1024083137 2025 dbSNP
rs1013902828 2034 dbSNP
rs894144197 2036 dbSNP
rs1200640072 2037 dbSNP
rs749562422 2040 dbSNP
rs1460013868 2045 dbSNP
rs182616617 2046 dbSNP
rs1013834695 2047 dbSNP
rs1221566334 2049 dbSNP
rs1380990080 2050 dbSNP
rs150167981 2052 dbSNP
rs1384427787 2053 dbSNP
rs1296853863 2054 dbSNP
rs542779786 2056 dbSNP
rs1000520111 2058 dbSNP
rs895493036 2061 dbSNP
rs1225329394 2062 dbSNP
rs1265275015 2068 dbSNP
rs140907839 2079 dbSNP
rs999005180 2096 dbSNP
rs1041519913 2099 dbSNP
rs1466041819 2104 dbSNP
rs1187095796 2105 dbSNP
rs1260953811 2112 dbSNP
rs1426256838 2116 dbSNP
rs1200339537 2121 dbSNP
rs945907948 2128 dbSNP
rs892528019 2135 dbSNP
rs371129207 2137 dbSNP
rs1326678237 2142 dbSNP
rs780277341 2144 dbSNP
rs904292978 2146 dbSNP
rs1043267349 2148 dbSNP
rs944689583 2152 dbSNP
rs756206261 2160 dbSNP
rs1384832346 2166 dbSNP
rs1380653153 2183 dbSNP
rs943228794 2187 dbSNP
rs1285301823 2189 dbSNP
rs745974130 2203 dbSNP
rs910545704 2214 dbSNP
rs1223147314 2216 dbSNP
rs986188133 2219 dbSNP
rs1318572921 2220 dbSNP
rs1216197291 2229 dbSNP
rs556890396 2229 dbSNP
rs1484864240 2234 dbSNP
rs1224574668 2236 dbSNP
rs1435740353 2237 dbSNP
rs151005940 2241 dbSNP
rs1196917229 2244 dbSNP
rs1490027948 2244 dbSNP
rs1413713839 2256 dbSNP
rs1421291413 2259 dbSNP
rs1160262611 2265 dbSNP
rs1363535717 2266 dbSNP
rs1452301493 2271 dbSNP
rs920883507 2275 dbSNP
rs972206231 2276 dbSNP
rs1051690566 2295 dbSNP
rs1389393801 2296 dbSNP
rs1366335110 2299 dbSNP
rs1161468550 2300 dbSNP
rs577862409 2303 dbSNP
rs1301568039 2308 dbSNP
rs933260812 2315 dbSNP
rs1375767629 2321 dbSNP
rs1224491426 2322 dbSNP
rs780923488 2329 dbSNP
rs557675792 2338 dbSNP
rs191340197 2346 dbSNP
rs1248101381 2353 dbSNP
rs757246034 2354 dbSNP
rs1292397026 2358 dbSNP
rs565366226 2360 dbSNP
rs942097559 2363 dbSNP
rs1034425254 2367 dbSNP
rs1411533430 2372 dbSNP
rs1234303509 2381 dbSNP
rs909313626 2383 dbSNP
rs751303869 2388 dbSNP
rs981326282 2389 dbSNP
rs776910590 2400 dbSNP
rs969530040 2407 dbSNP
rs1438205717 2411 dbSNP
rs1020178423 2418 dbSNP
rs73241407 2420 dbSNP
rs758011538 2421 dbSNP
rs1161774522 2425 dbSNP
rs1356312769 2426 dbSNP
rs1372501926 2428 dbSNP
rs956991652 2429 dbSNP
rs1031732944 2430 dbSNP
rs535212859 2443 dbSNP
rs1370983328 2456 dbSNP
rs1454373672 2462 dbSNP
rs145260022 2483 dbSNP
rs1358621248 2485 dbSNP
rs1243620863 2493 dbSNP
rs752408543 2496 dbSNP
rs1274544059 2500 dbSNP
rs764958485 2520 dbSNP
rs1007368080 2522 dbSNP
rs1203446376 2563 dbSNP
rs1249252927 2564 dbSNP
rs888946018 2568 dbSNP
rs1456744207 2571 dbSNP
rs1185783260 2581 dbSNP
rs1244075368 2585 dbSNP
rs550899930 2586 dbSNP
rs758908513 2588 dbSNP
rs1180552206 2589 dbSNP
rs1248067307 2593 dbSNP
rs775182188 2606 dbSNP
rs75780439 2607 dbSNP
rs1352950515 2610 dbSNP
rs1470864606 2612 dbSNP
rs1036743196 2613 dbSNP
rs1450365440 2614 dbSNP
rs771944744 2615 dbSNP
rs930683233 2620 dbSNP
rs1362120957 2628 dbSNP
rs1213441951 2629 dbSNP
rs1270502036 2635 dbSNP
rs920821157 2644 dbSNP
rs1169792440 2655 dbSNP
rs1325271259 2656 dbSNP
rs565570633 2663 dbSNP
rs1264145418 2665 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 23087.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acUCUGUCCAAGUACGACGAUa 5'
            | |||   | ||||||||| 
Target 5' uuAUACA---UAAUGCUGCUAg 3'
15 - 33
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000305364.4 | 3UTR | CUACUUCUUGACUAUUAUACAUAAUGCUGCUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
180 hsa-miR-4524a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055251 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT055826 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT060573 CCND1 cyclin D1 2 2
MIRT061013 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT064694 CCND2 cyclin D2 2 4
MIRT075268 SNTB2 syntrophin beta 2 2 4
MIRT079668 NAPG NSF attachment protein gamma 2 12
MIRT081651 CCNE1 cyclin E1 2 4
MIRT082996 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT083463 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT085755 RIF1 replication timing regulatory factor 1 2 2
MIRT086022 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT087431 ZNRF3 zinc and ring finger 3 2 2
MIRT088786 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT089221 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT093696 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT095090 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT096249 CANX calnexin 2 2
MIRT100215 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT100746 VEGFA vascular endothelial growth factor A 2 12
MIRT100904 CD2AP CD2 associated protein 2 2
MIRT102647 UBN2 ubinuclein 2 2 10
MIRT103882 FOXK1 forkhead box K1 2 2
MIRT104246 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT106310 ZFHX4 zinc finger homeobox 4 2 6
MIRT107696 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT114943 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT117671 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT133799 SKI SKI proto-oncogene 2 2
MIRT140167 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT142279 DCTN5 dynactin subunit 5 2 8
MIRT143288 N4BP1 NEDD4 binding protein 1 2 2
MIRT165939 CREBRF CREB3 regulatory factor 2 2
MIRT175251 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT186381 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT191470 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT196480 TAOK1 TAO kinase 1 2 2
MIRT201470 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT204615 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204646 MOB4 MOB family member 4, phocein 2 8
MIRT204749 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT206031 NUP50 nucleoporin 50 2 6
MIRT211196 FGF2 fibroblast growth factor 2 2 4
MIRT229353 ZNF449 zinc finger protein 449 2 2
MIRT247138 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT249461 ZNF691 zinc finger protein 691 2 4
MIRT256314 CDC42SE2 CDC42 small effector 2 2 2
MIRT258419 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT265083 CHEK1 checkpoint kinase 1 2 2
MIRT270561 SETD1B SET domain containing 1B 2 2
MIRT274749 RAB3IP RAB3A interacting protein 2 2
MIRT277515 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT289642 CBX2 chromobox 2 2 2
MIRT301001 MTMR3 myotubularin related protein 3 2 2
MIRT307149 CTDSPL CTD small phosphatase like 2 4
MIRT309021 USP53 ubiquitin specific peptidase 53 2 2
MIRT314100 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT319338 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT320619 ZNRF2 zinc and ring finger 2 2 2
MIRT324285 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT446498 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT448437 TLL1 tolloid like 1 2 2
MIRT461537 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463162 ZNF367 zinc finger protein 367 2 10
MIRT463493 ZC3H10 zinc finger CCCH-type containing 10 2 2
MIRT465154 TSC22D2 TSC22 domain family member 2 2 2
MIRT466418 TFAP2A transcription factor AP-2 alpha 2 8
MIRT468278 SFT2D2 SFT2 domain containing 2 2 2
MIRT469399 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471941 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT473688 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT479618 CDC25A cell division cycle 25A 2 2
MIRT482098 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483995 ATAD5 ATPase family, AAA domain containing 5 2 12
MIRT485205 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT498763 C3orf38 chromosome 3 open reading frame 38 2 8
MIRT498961 ORC4 origin recognition complex subunit 4 2 8
MIRT499440 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500080 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500305 ZNF622 zinc finger protein 622 2 8
MIRT500410 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500789 TLK1 tousled like kinase 1 2 6
MIRT500930 SRPR SRP receptor alpha subunit 2 6
MIRT500943 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501068 SMAD7 SMAD family member 7 2 8
MIRT501711 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT502627 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502910 CDCA4 cell division cycle associated 4 2 8
MIRT502935 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504531 ZNF620 zinc finger protein 620 2 6
MIRT505106 YTHDC1 YTH domain containing 1 2 6
MIRT505337 TMEM245 transmembrane protein 245 2 6
MIRT505383 TMEM100 transmembrane protein 100 2 2
MIRT505678 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506157 PLAG1 PLAG1 zinc finger 2 8
MIRT506183 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506475 MYO5A myosin VA 2 6
MIRT506826 KIF23 kinesin family member 23 2 6
MIRT507160 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT507511 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT507845 CCNE2 cyclin E2 2 6
MIRT510403 ZNF507 zinc finger protein 507 2 2
MIRT518078 TRIM35 tripartite motif containing 35 2 2
MIRT518982 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT521045 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521190 SBNO1 strawberry notch homolog 1 2 6
MIRT522088 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT524846 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT527787 TMEM44 transmembrane protein 44 2 4
MIRT537803 EFNB2 ephrin B2 2 4
MIRT540830 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541140 PISD phosphatidylserine decarboxylase 2 2
MIRT541419 CBX4 chromobox 4 2 2
MIRT543517 PRSS21 protease, serine 21 2 2
MIRT543824 GSG1 germ cell associated 1 2 2
MIRT544959 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545179 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545335 CCDC83 coiled-coil domain containing 83 2 2
MIRT545518 RSL24D1 ribosomal L24 domain containing 1 2 2
MIRT545670 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545931 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546102 USP48 ubiquitin specific peptidase 48 2 4
MIRT546598 SALL1 spalt like transcription factor 1 2 4
MIRT546626 RTN4 reticulon 4 2 2
MIRT547651 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547987 HCFC2 host cell factor C2 2 4
MIRT548717 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548931 CDK17 cyclin dependent kinase 17 2 2
MIRT549067 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549266 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550460 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550806 FAM229B family with sequence similarity 229 member B 2 2
MIRT552024 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552334 ZNF704 zinc finger protein 704 2 2
MIRT552732 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT553795 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554694 RNF149 ring finger protein 149 2 2
MIRT555133 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555264 PRDM4 PR/SET domain 4 2 2
MIRT556848 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557474 GPR27 G protein-coupled receptor 27 2 4
MIRT558018 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558498 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558579 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558610 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT558650 CNKSR3 CNKSR family member 3 2 2
MIRT558986 CA8 carbonic anhydrase 8 2 2
MIRT559141 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559327 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT562021 LANCL1 LanC like 1 2 2
MIRT562869 KIAA1456 KIAA1456 2 2
MIRT563074 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563496 DLGAP3 DLG associated protein 3 2 2
MIRT563890 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564311 CCNT1 cyclin T1 2 2
MIRT564942 XKR7 XK related 7 2 2
MIRT564979 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT565423 TEF TEF, PAR bZIP transcription factor 2 2
MIRT566824 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571961 KIF5B kinesin family member 5B 2 2
MIRT575877 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT576523 Txlna taxilin alpha 2 2
MIRT614693 TRAK1 trafficking kinesin protein 1 2 2
MIRT616065 ZC3H14 zinc finger CCCH-type containing 14 2 2
MIRT618838 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT624626 ATXN2 ataxin 2 2 2
MIRT624652 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT640314 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT659248 CUL3 cullin 3 2 2
MIRT680972 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682261 RS1 retinoschisin 1 2 2
MIRT682505 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693904 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT699214 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT699373 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699451 SLC16A9 solute carrier family 16 member 9 2 2
MIRT701230 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702849 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT706163 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT718990 UTP15 UTP15, small subunit processome component 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4524a-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4524a-5p Cetuximab resistant tissue (colorectal carcinoma)

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