miRTarBase - #MIRT518386


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pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF250   
Synonyms ZFP647, ZNF647
Description zinc finger protein 250
Transcript NM_001109689   
Other Transcripts NM_021061   
Expression
Putative miRNA Targets on ZNF250
3'UTR of ZNF250
(miRNA target sites are highlighted)		 
>ZNF250|NM_001109689|3'UTR
   1 CCCATGGCTGACACAAGAATCCATTCTCACAGAAACTGCATGTGGAACCACAAGCAGCCTTCAGCCCAAGAGAAGTCTCT
  81 GTTAACTCTATAGGAAGCTTTTCTTTGGCGATTCAGTGTCACAAAATAACTCCAGAAAGAAGCACTTAGCGTGCTGTTCC
 161 TGTGGAAAAACTTCAGAGACTACCTGTTTTATTTTCCTCAACATCTTGAAGTTATGTTGGAGAGTAATCATACAATTGTA
 241 GAGAATTTTGGTAAAAAACAGCCATAATTCTTTAACATTAGTTTATTTGAACTAAGGGAATTTAAGGCATAAGAACCATT
 321 ATCCCAATAAAATCTTACATTCCAAATAAAGTTCTTTTTCTAAGAACATTACATGCCCTTCCTAAATATCAATTAACCAT
 401 ACTAATTATTGCACTTAAAATTTGAAAGTCGGACTATTTTCAGTATTCTCTTAAAAGACTAAAGTATTGTATGGATAAAG
 481 TGATATAAAAAGATATTTTCATCAAGCATCATGTAAAATGGTTGGAAATCCTAAGTGTGTGGATTTCCATCCTAAGTGTG
 561 TGGAGTCCTGTTTTGTATGAAACAAGGAAAAAGCTTATATATTAGTGAGAAATTACATAAATTTAAAAAACTTTTTGTAT
 641 GTGTGTGTGGAGATAGTCTTGCTCTGTTGCCCAAGCTGCAGTGCAGTGGCATGATCTTGGCTCACTGCAGTCTCCGCCCC
 721 CACCCCAGGTTCAAGCTTTTCTTGTGCCTCAGTCTCCCAAGTAACTAGGATTATAGATATGCGCCACCACACCTGGCTAA
 801 TTTTTGTATTTTTAGTAGAGACGGAGTTTCACCGTGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCCTCCC
 881 ACCTTTGCTTCCGAAAGTGTTGGGATTACAGGCGTGAGGCACCATGCCTGGCCTAGAAAACCCTTTATCTGGAGCTTTTA
 961 ACTTTATTCAAGATCAGAAAGGTTATGCTAACTTTTTAGTAAAAATTCAACTCAAAAATGGGTATTTTCCTCAAAACTTG
1041 CCCTTATGACCTGCAGATCCTGTGCCCCAGAAACCGTGAGATGTCTCAATTCCCATGCAGGCAAAGGAGGGGAGCTTCAC
1121 ACTCAGCAGACCTCATAGCTGTTACACCAAGTGGGTACCTCTTTACATCTTATGGTATTTCCCCCAAAACAATGCTGAAA
1201 ATACTGTTCTTTGGTAGATATATTTAAAACATACATTTCTCAAATTCAGATAGCTCTTTTTTACTATCTCTAGTATTTCT
1281 ATTCCTATATTTGAAGGGGTTTTTTTTTTCATTTTTTTACTCCTGGTTCAAGAGTCCAGTATCCATTGCCATATTACTAT
1361 GATGAAGATGAATCTAGTTTATTCATAATTAAAAATTTGTATTCAGAATTATTTGTTCTGTTTTAAGCATACTTTTTTTT
1441 TTTTTTTTGAGACAAAGTCTTGCTCTTGTTCCCCAGGCTGAAGTGCAATGGCACAATCTCAGCTCACTGCAATCTCCACC
1521 TCCCAGGTTCAAGCAATTCTCCTGCCTCTGCCTCCCAAGTAGCTGGAATTACAGGCACCTGCTACCACGCCCGACTAATT
1601 TTCGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGC
1681 CTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGTGCCACCGCACCCGGCCAAGGATACAGTTCTTGAAACCGAATCAGA
1761 ACCATTTCTAGTAGCAGCCAGCTGCAAACGAAACAAATGTATGAGGTTCAAGCCACTTGAAATTCTCAACATGTTAAGTG
1841 CCTGAGATAGAGAAGGGCTGTCTTCACCCCAGGCCCCCGCCCCCAACATCTGTCAGTTTGGTGGGGAGGAAATAGTCACC
1921 AGGATATTGATCCTTTTTGTTTGTTTTAAAGACGGTCTTGCTCTGTCACCAGGTTGGAGTGCAGTGGTGCCATCATGGCT
2001 CACCGCTGCCTCAAACTCCTGGGCTGAAGCAGTCCTCCCACCTCACCTTCCCAAAAGGTTAGGATTACAGGCATGAGCTG
2081 CTGTGCCCATCCAGGCATTGATCCTTAAGTCCACAGCAAAACACCACGATGTAGACAAAAGCTTGTTCCCCCTTCTATGT
2161 ACAGACACTGACAACAGTGAATTATTAACTCCAGAGAGGAACTGGTAACTGATTGGTTAACTTGAGAAAGGAGCTGACAT
2241 CACTGGTGTTTTACTTCAGAGCAACTGAAACCACTGAAGTGAAATTCCAGAGGAACTAATATTACTGAGGTGTTACTTCA
2321 GAGGGACTGAGATCACTGAAGTGAAACCTCAGATAGCTCAGATAACCAAGGTGTTAACCTTAGAGGTGTTGCCATTCTGT
2401 GAGGTGTTGTTTCAGATAGATAAAATAACTAAGGTGTTAGTTCAGAGAAGACAAGAGCTTAACTGTTTCTTTGGAGAAGA
2481 GCTGAGATCACTGAGGCGTCACTTCAGAAAGAAAGTGAGACAATTTTTGTTACTTCAGAGGATCTGAGTACACTGAGGTG
2561 TTTCATCAGAGAGGAGGTGAGATCACTGGGTGTTACTTCTGAAAGGAATTGACATCACTAGTGGGTACTGCAGAGTAGCT
2641 CTGACCACTGAGGTTTACTTCAGAGGAGCTGAAATAACGGAAATGGGATCACTAAGGTATTACTTTAGAGATTAGATCAT
2721 TGAGGTAATTCTTCAGAGAAGCTGAGATCACAGAGGTGTTTCTTCAGAGAAGTTGAAATCACTAATGTGAAACTCTAGAA
2801 GAATGGAGGTCACTGAGTGCTATTTCATAAAGGAAGTGAAATCACTATATTGTACCATCGGAAAGATGAGAATGCTGAGA
2881 TGTTACTTAGGAGCTGAGATCACTGAGGTTCTGCTTCAGAGAAAAGCTGATACCAATGAGATGTTACTTAAGGGAGGAGC
2961 TGAGGTTACTGAGGTATTATTCAGGACCAAGATGGTGTCCCTCAGGTGTTAGAAGCTGAGATCACAGAGATGTTACTTAA
3041 GAGAGGCTGAGACTGCTGATGTGATTCTTCAGAAAGGAAATGAGATCACTAAGCTGTTAACTTTAGAAAGGAGATGAAAT
3121 AACTGAGTTGTTCACTGGAGTTGAGATCACACAGGTGTTAACTTCAGAGGTGGCTGAAATCACTAAGGTGATTCTTCAGA
3201 GAAAGGTTGAGATCACTAGGGGTGATGCTTTAGAAAGAGGTTACTTTAGGGAAAAGCTATGATCACTGAGAAGTTACTTC
3281 AGAATGGAGCTGAGATCACTGAGGTAACAGTCCAAAGAGGAACTGAGATTACTGAGGTGTTACTTCAGAGCCAAGAGATC
3361 ACCCAGGTACCTAGATGAGATCACTGAGATGAAAGTCCAGAAACCTGAGGTCACCTCAATATTAATTGAGAGAAAATGAG
3441 AACACTGTGGTGCTATCTTAAATCTTCTATGAAAGGAAGCTGCCAACCTGTGTTAGCTGAGTCCACAGCTGGCATGTGAC
3521 TCAGTGGCAGCTGCTCAGTGCCCACTACTATTCAGGCCCCAATTTCTAATCATTAAAGACAAAGTCATATTCCAATTAAG
3601 ATGAGAATAATTAAATTCAATATACAGGAACATTTGTTTAGAAAGACTGTGTATCACAGGACAACGTAAGTTACACAGTA
3681 CAAGTTATTCTGGATTCCAATAACCTAGGGTTTTCAGGGAAATCCTTCCAAAAAGTATAGTTTTTTTCCTGCATTCTTAA
3761 AATGAGCTTAATATCATTCTGCCTGTTCTTGCTATGTCAGGCTGCCATTGATCCACTGGTGAGAATGCAGGCTCAGGTGT
3841 CCACGGAGCCAGGAAGTGGGCTTCAATGCCCTTCTTTCTGAGGAGGATTCCCAGGCTACATTTTCTTGCCACTCACCTCC
3921 TCCTCTCCAAGGAGAAAGAGGTGGCACATGACCTACTGGAACATGTGGGCTATCTACCTTTTTGGGATATAACATCAAAG
4001 GCCAGGGCCCTGAATTTTCATGCTGATAACAGTCTTCTCAACCATTATCTTCTGCCTGATTTGTCAGCAGCATTCCACCT
4081 TTATTTTGGATTTGTTTTATTCAGAAGTCTGTATATTTTAGGTATTTAAATACTTCTCTTTGGCTGGGTGCAATGGCTCA
4161 CACCTGTAATCCCAGCACTTTGGGAGGCTGAAGTGGGTGGATCGCTTGAGCCCAGGACTTTGAGACCAGCATGGCGAAAA
4241 CCCGTCTCTACAAAAAAAAAATTAGCTGGGTGTTGTGGCTTGCGCCTGTAGTCCCAGATACGTGGGAGGCTAAGGTGGGA
4321 GGATTGATTGGGAGTTCAAGACTAGTGTGCTGTGATCATACTATCTAGCCTGGACAACAGAGAGAGACCTTGTCACAAAA
4401 AATACGTATATATTTCTTTTAAAATTGTTTCTTCTAACAGCTATTAAGAATTTGAAACTTGGTTCTCTTCAAATTTTCTA
4481 TTATTTTGGAAAACATTTTAGTCTGCCTGGAATTTCTGTGTATAATCTGACGCTTTCCAATAAAAAAGTAATGACTGGAA
4561 CAAGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcucacACUCUAG-UGUGGAGGg 5'
                ||  |||  ||||||| 
Target 5' gctcacTGCAATCTCCACCTCCc 3'
 1502 - 1524 148.00 -16.80
2 
miRNA  3' gcucacACUCUAGUGUGGAGGg 5'
                ||  | | ||||||| 
Target 5' ttttctTGCCA-CTCACCTCCt 3'
 3901 - 3921 143.00 -13.50
3 
miRNA  3' gcucacACUCUAGUGUGGAGgg 5'
                ||||:|  ||||||  
Target 5' gaaaccTGAGGT--CACCTCaa 3'
 3400 - 3419 136.00 -14.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN27005943 6 COSMIC
COSN28875326 9 COSMIC
COSN31496499 28 COSMIC
COSN14598034 99 COSMIC
COSN30139202 151 COSMIC
COSN20091885 230 COSMIC
COSN1361739 593 COSMIC
COSN8074453 769 COSMIC
COSN27877265 794 COSMIC
COSN22228685 874 COSMIC
COSN31490245 975 COSMIC
COSN2525715 983 COSMIC
COSN28561371 983 COSMIC
COSM8998830 1060 COSMIC
COSM2872288 1076 COSMIC
COSN31517639 1098 COSMIC
COSN9258242 1228 COSMIC
COSN31528983 1284 COSMIC
COSN28841332 1299 COSMIC
COSN31524602 1299 COSMIC
COSN8074452 1299 COSMIC
COSN20059656 1300 COSMIC
COSN31529516 1315 COSMIC
COSN28187118 1323 COSMIC
COSN9258241 1400 COSMIC
COSN8575719 1435 COSMIC
COSN32005660 1592 COSMIC
COSN16051250 1803 COSMIC
COSN17570900 1879 COSMIC
COSN5677402 2168 COSMIC
COSN9606466 3084 COSMIC
COSN20091884 3111 COSMIC
COSN24747410 3579 COSMIC
COSN8074450 3681 COSMIC
COSN20091883 3868 COSMIC
COSN25363323 4284 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1433401493 1 dbSNP
rs766585474 2 dbSNP
rs375486873 3 dbSNP
rs1289995673 5 dbSNP
rs761115904 13 dbSNP
rs1380326341 14 dbSNP
rs879476240 15 dbSNP
rs1347620026 17 dbSNP
rs1055282134 21 dbSNP
rs370088194 31 dbSNP
rs772491403 34 dbSNP
rs767516427 39 dbSNP
rs1409117245 40 dbSNP
rs1335293928 42 dbSNP
rs748210237 47 dbSNP
rs1326888035 50 dbSNP
rs968022772 58 dbSNP
rs572473496 72 dbSNP
rs898298526 81 dbSNP
rs867082254 86 dbSNP
rs1353021158 91 dbSNP
rs1238057689 96 dbSNP
rs1257897467 97 dbSNP
rs1307503928 100 dbSNP
rs1023642586 109 dbSNP
rs1012347779 110 dbSNP
rs560620761 115 dbSNP
rs1238719439 116 dbSNP
rs986765043 118 dbSNP
rs1428941881 123 dbSNP
rs932623622 124 dbSNP
rs1375338686 125 dbSNP
rs1035220814 134 dbSNP
rs1171683931 142 dbSNP
rs921312223 145 dbSNP
rs1005533023 148 dbSNP
rs188243849 150 dbSNP
rs578104298 151 dbSNP
rs995136251 152 dbSNP
rs1490748099 160 dbSNP
rs1031761674 163 dbSNP
rs1303464807 164 dbSNP
rs898175885 167 dbSNP
rs1331804576 178 dbSNP
rs759763138 179 dbSNP
rs1269074140 180 dbSNP
rs140748649 184 dbSNP
rs774439187 195 dbSNP
rs977576805 212 dbSNP
rs1481781622 215 dbSNP
rs912369065 219 dbSNP
rs1253632157 224 dbSNP
rs971644027 229 dbSNP
rs370973969 230 dbSNP
rs770386482 236 dbSNP
rs935241750 240 dbSNP
rs1197671132 255 dbSNP
rs544463213 256 dbSNP
rs1160324744 258 dbSNP
rs138347141 259 dbSNP
rs894796068 259 dbSNP
rs141805798 260 dbSNP
rs773634711 261 dbSNP
rs1299680311 270 dbSNP
rs923818703 278 dbSNP
rs995216828 279 dbSNP
rs1346400726 292 dbSNP
rs1391495629 312 dbSNP
rs979327514 334 dbSNP
rs967994870 336 dbSNP
rs916601009 345 dbSNP
rs1342597347 360 dbSNP
rs1219548989 362 dbSNP
rs1036839265 368 dbSNP
rs939824291 373 dbSNP
rs991295935 376 dbSNP
rs1267178340 387 dbSNP
rs762025801 397 dbSNP
rs1208735259 398 dbSNP
rs183634333 414 dbSNP
rs369707317 430 dbSNP
rs1005092031 431 dbSNP
rs1462455083 434 dbSNP
rs1423301396 443 dbSNP
rs117151477 461 dbSNP
rs1167446617 464 dbSNP
rs776162863 466 dbSNP
rs1350989785 467 dbSNP
rs1027878162 471 dbSNP
rs1301367276 473 dbSNP
rs1481264112 476 dbSNP
rs995105187 480 dbSNP
rs191437205 486 dbSNP
rs1429632627 492 dbSNP
rs1400809771 493 dbSNP
rs572529156 508 dbSNP
rs565653719 512 dbSNP
rs1360960011 515 dbSNP
rs1212590035 516 dbSNP
rs1252073229 530 dbSNP
rs1039399952 531 dbSNP
rs1322238048 539 dbSNP
rs936063225 549 dbSNP
rs1288938463 552 dbSNP
rs1195827381 565 dbSNP
rs1489000025 565 dbSNP
rs1007040827 568 dbSNP
rs890916095 578 dbSNP
rs1483210421 584 dbSNP
rs1254711369 585 dbSNP
rs1206031184 587 dbSNP
rs1423710500 594 dbSNP
rs1324711845 598 dbSNP
rs1051288807 601 dbSNP
rs977503160 604 dbSNP
rs746608471 607 dbSNP
rs1267784965 618 dbSNP
rs902369169 622 dbSNP
rs1343664968 624 dbSNP
rs1024512139 625 dbSNP
rs1352507838 626 dbSNP
rs992117785 626 dbSNP
rs958989385 627 dbSNP
rs1451771777 630 dbSNP
rs1307839137 631 dbSNP
rs1312878612 631 dbSNP
rs1355143307 632 dbSNP
rs1395484495 637 dbSNP
rs1033324870 641 dbSNP
rs1378375550 645 dbSNP
rs1300983606 647 dbSNP
rs1314762060 650 dbSNP
rs1470854423 662 dbSNP
rs1211848012 663 dbSNP
rs1238386727 663 dbSNP
rs1461163896 672 dbSNP
rs1182241031 677 dbSNP
rs995187235 683 dbSNP
rs1158075300 690 dbSNP
rs1440328953 703 dbSNP
rs1178082718 707 dbSNP
rs898194104 708 dbSNP
rs779869601 709 dbSNP
rs946661597 715 dbSNP
rs916571322 716 dbSNP
rs9774048 717 dbSNP
rs1004003301 719 dbSNP
rs1365144188 721 dbSNP
rs145112287 725 dbSNP
rs890945077 729 dbSNP
rs990871070 747 dbSNP
rs187045032 748 dbSNP
rs928032900 754 dbSNP
rs997126375 760 dbSNP
rs758189517 772 dbSNP
rs1254738516 779 dbSNP
rs183404838 782 dbSNP
rs1027848350 783 dbSNP
rs1054356882 789 dbSNP
rs935989596 791 dbSNP
rs1260456433 794 dbSNP
rs1458600679 795 dbSNP
rs1462090701 810 dbSNP
rs778897406 817 dbSNP
rs973638686 818 dbSNP
rs149948013 822 dbSNP
rs1353145611 823 dbSNP
rs1191924984 826 dbSNP
rs753750128 828 dbSNP
rs1244214911 829 dbSNP
rs1041777144 830 dbSNP
rs1173984641 830 dbSNP
rs767566760 833 dbSNP
rs112959921 834 dbSNP
rs1437992180 845 dbSNP
rs1275012869 848 dbSNP
rs751717600 849 dbSNP
rs1221376926 853 dbSNP
rs890792935 862 dbSNP
rs766584990 870 dbSNP
rs1319067824 883 dbSNP
rs777713486 885 dbSNP
rs567543620 888 dbSNP
rs192863216 892 dbSNP
rs572141553 893 dbSNP
rs946630543 894 dbSNP
rs1158757428 900 dbSNP
rs1015300160 904 dbSNP
rs1004333164 912 dbSNP
rs118186177 913 dbSNP
rs151208605 914 dbSNP
rs1055456133 921 dbSNP
rs1475636508 927 dbSNP
rs1167187611 929 dbSNP
rs762346036 941 dbSNP
rs1323636951 942 dbSNP
rs541828219 954 dbSNP
rs927971864 955 dbSNP
rs533359147 956 dbSNP
rs1402666788 981 dbSNP
rs1299690769 982 dbSNP
rs1209850 983 dbSNP
rs1187089047 984 dbSNP
rs1449073949 985 dbSNP
rs1227174840 991 dbSNP
rs929402633 992 dbSNP
rs1448675855 1013 dbSNP
rs1054280695 1017 dbSNP
rs780908151 1021 dbSNP
rs1486850378 1024 dbSNP
rs760093022 1028 dbSNP
rs973607647 1029 dbSNP
rs1490566218 1034 dbSNP
rs1294262055 1039 dbSNP
rs1226590754 1040 dbSNP
rs774624450 1045 dbSNP
rs1296841671 1051 dbSNP
rs768806244 1055 dbSNP
rs1192179026 1061 dbSNP
rs903158450 1064 dbSNP
rs1301962409 1065 dbSNP
rs1405068133 1069 dbSNP
rs544399096 1075 dbSNP
rs950155521 1076 dbSNP
rs1384037051 1078 dbSNP
rs745757296 1080 dbSNP
rs1017819939 1089 dbSNP
rs775178247 1098 dbSNP
rs1056314785 1107 dbSNP
rs1431349202 1109 dbSNP
rs937507974 1112 dbSNP
rs988140093 1114 dbSNP
rs1424426285 1115 dbSNP
rs574024036 1118 dbSNP
rs576111896 1120 dbSNP
rs1271251517 1122 dbSNP
rs1357286494 1124 dbSNP
rs1203291037 1126 dbSNP
rs770615406 1127 dbSNP
rs1242423001 1128 dbSNP
rs556509954 1138 dbSNP
rs1350220407 1144 dbSNP
rs1029766747 1146 dbSNP
rs962294894 1147 dbSNP
rs1318630032 1149 dbSNP
rs999218833 1151 dbSNP
rs908166982 1154 dbSNP
rs745533919 1155 dbSNP
rs1388043851 1157 dbSNP
rs1304460166 1158 dbSNP
rs955270341 1166 dbSNP
rs1179967851 1169 dbSNP
rs1029401349 1177 dbSNP
rs1022083845 1180 dbSNP
rs1452579653 1181 dbSNP
rs1424686130 1182 dbSNP
rs1010657927 1183 dbSNP
rs997022278 1186 dbSNP
rs963842858 1192 dbSNP
rs1336581199 1193 dbSNP
rs894980947 1201 dbSNP
rs879351893 1204 dbSNP
rs1055026265 1205 dbSNP
rs1449731155 1209 dbSNP
rs555990780 1221 dbSNP
rs1003891847 1240 dbSNP
rs556317273 1241 dbSNP
rs1000031593 1243 dbSNP
rs1346793722 1252 dbSNP
rs1047792183 1253 dbSNP
rs1262350259 1263 dbSNP
rs929373270 1266 dbSNP
rs920638878 1279 dbSNP
rs1200506260 1290 dbSNP
rs571960149 1299 dbSNP
rs1418034870 1300 dbSNP
rs1176148653 1310 dbSNP
rs1179140533 1310 dbSNP
rs1194248663 1310 dbSNP
rs1373977499 1311 dbSNP
rs903127089 1323 dbSNP
rs1198523788 1325 dbSNP
rs1299262057 1326 dbSNP
rs943488051 1338 dbSNP
rs377521633 1339 dbSNP
rs1431695860 1348 dbSNP
rs1389761847 1351 dbSNP
rs1303576414 1352 dbSNP
rs1020676620 1367 dbSNP
rs1271260365 1369 dbSNP
rs1282373612 1373 dbSNP
rs1014245175 1389 dbSNP
rs1220351068 1391 dbSNP
rs1251818946 1394 dbSNP
rs1479992011 1397 dbSNP
rs910730606 1400 dbSNP
rs1223386808 1418 dbSNP
rs762554536 1419 dbSNP
rs895830401 1424 dbSNP
rs1482753380 1427 dbSNP
rs536593239 1428 dbSNP
rs1479024154 1430 dbSNP
rs1273916600 1432 dbSNP
rs1193991993 1446 dbSNP
rs74374992 1448 dbSNP
rs112116823 1449 dbSNP
rs1296096862 1449 dbSNP
rs1372997501 1449 dbSNP
rs1460979728 1449 dbSNP
rs1491172543 1449 dbSNP
rs199514443 1449 dbSNP
rs397779413 1449 dbSNP
rs61668478 1449 dbSNP
rs777588631 1449 dbSNP
rs796923549 1449 dbSNP
rs1270556392 1450 dbSNP
rs1491151536 1450 dbSNP
rs1232205632 1457 dbSNP
rs1266670112 1457 dbSNP
rs937443779 1459 dbSNP
rs1266349801 1463 dbSNP
rs1489101822 1468 dbSNP
rs754754674 1472 dbSNP
rs751797923 1473 dbSNP
rs1187471145 1475 dbSNP
rs188849697 1478 dbSNP
rs1427236488 1484 dbSNP
rs1405068359 1488 dbSNP
rs1385899392 1494 dbSNP
rs1369392929 1500 dbSNP
rs1037874005 1511 dbSNP
rs1161840014 1512 dbSNP
rs940897535 1514 dbSNP
rs778807327 1515 dbSNP
rs567561370 1518 dbSNP
rs955160095 1522 dbSNP
rs1327497754 1531 dbSNP
rs922285530 1533 dbSNP
rs1380404459 1534 dbSNP
rs1412139869 1536 dbSNP
rs1317112061 1541 dbSNP
rs988157978 1544 dbSNP
rs977769681 1547 dbSNP
rs966353491 1548 dbSNP
rs1318317889 1560 dbSNP
rs1216124898 1572 dbSNP
rs1021968045 1574 dbSNP
rs1010625342 1579 dbSNP
rs959215973 1585 dbSNP
rs1431772472 1588 dbSNP
rs1033957398 1589 dbSNP
rs371672385 1592 dbSNP
rs906480122 1593 dbSNP
rs1249732387 1601 dbSNP
rs1047680187 1603 dbSNP
rs142162597 1604 dbSNP
rs1032783640 1607 dbSNP
rs1338528807 1611 dbSNP
rs1383436487 1612 dbSNP
rs1209851 1616 dbSNP
rs899177758 1618 dbSNP
rs1451877127 1619 dbSNP
rs1312253764 1620 dbSNP
rs978578913 1621 dbSNP
rs1037764805 1624 dbSNP
rs943474545 1632 dbSNP
rs556418373 1638 dbSNP
rs1321109205 1641 dbSNP
rs910708540 1644 dbSNP
rs1315447613 1650 dbSNP
rs1020184752 1662 dbSNP
rs1264214031 1666 dbSNP
rs1014627738 1667 dbSNP
rs1202375155 1674 dbSNP
rs1240050878 1675 dbSNP
rs1470570797 1679 dbSNP
rs1176764050 1682 dbSNP
rs1264687340 1683 dbSNP
rs1435200571 1684 dbSNP
rs1052398996 1685 dbSNP
rs1223728001 1686 dbSNP
rs1406608965 1695 dbSNP
rs1469185332 1698 dbSNP
rs1334651853 1702 dbSNP
rs1355709364 1711 dbSNP
rs1349428271 1712 dbSNP
rs1297163335 1721 dbSNP
rs933585860 1722 dbSNP
rs924828976 1727 dbSNP
rs977653633 1728 dbSNP
rs1034770096 1732 dbSNP
rs111925468 1752 dbSNP
rs2735958 1753 dbSNP
rs1438409791 1769 dbSNP
rs372077659 1789 dbSNP
rs549233574 1790 dbSNP
rs527691615 1805 dbSNP
rs1200445850 1812 dbSNP
rs183839361 1829 dbSNP
rs970594891 1830 dbSNP
rs1174113209 1838 dbSNP
rs1421558950 1843 dbSNP
rs1026206766 1850 dbSNP
rs1410527832 1853 dbSNP
rs539346036 1859 dbSNP
rs1352308236 1867 dbSNP
rs899147043 1869 dbSNP
rs1406337397 1874 dbSNP
rs368379666 1878 dbSNP
rs1303413710 1879 dbSNP
rs1345197512 1881 dbSNP
rs1403504974 1883 dbSNP
rs1272345628 1886 dbSNP
rs933601015 1892 dbSNP
rs1214552131 1908 dbSNP
rs1470540317 1914 dbSNP
rs534167998 1916 dbSNP
rs766594255 1920 dbSNP
rs975503940 1921 dbSNP
rs1186742472 1926 dbSNP
rs551476161 1928 dbSNP
rs1016303171 1937 dbSNP
rs925691957 1938 dbSNP
rs1007636177 1939 dbSNP
rs1475686364 1947 dbSNP
rs889238885 1952 dbSNP
rs571727620 1953 dbSNP
rs992726246 1954 dbSNP
rs1163759628 1971 dbSNP
rs1364556199 1972 dbSNP
rs960230498 1983 dbSNP
rs1051861875 1995 dbSNP
rs533298741 2004 dbSNP
rs777556515 2005 dbSNP
rs903376092 2008 dbSNP
rs562621286 2011 dbSNP
rs756144838 2017 dbSNP
rs1005009020 2032 dbSNP
rs886601169 2035 dbSNP
rs1207165932 2038 dbSNP
rs914899794 2049 dbSNP
rs751608980 2068 dbSNP
rs1447391255 2070 dbSNP
rs550775908 2071 dbSNP
rs1246129867 2073 dbSNP
rs370269517 2075 dbSNP
rs75814263 2083 dbSNP
rs1039290381 2085 dbSNP
rs1451113430 2090 dbSNP
rs1471578794 2101 dbSNP
rs531384863 2111 dbSNP
rs1159971963 2112 dbSNP
rs190742151 2125 dbSNP
rs762962503 2127 dbSNP
rs981897046 2128 dbSNP
rs147471227 2130 dbSNP
rs1026174285 2134 dbSNP
rs971962499 2138 dbSNP
rs1454022840 2145 dbSNP
rs558909905 2145 dbSNP
rs963324451 2148 dbSNP
rs1380700277 2150 dbSNP
rs1280360045 2152 dbSNP
rs1016270644 2155 dbSNP
rs1320496562 2157 dbSNP
rs780157204 2158 dbSNP
rs758567697 2160 dbSNP
rs1462580342 2167 dbSNP
rs913023446 2177 dbSNP
rs1413145988 2185 dbSNP
rs1161683421 2186 dbSNP
rs1241943689 2194 dbSNP
rs993086531 2196 dbSNP
rs186279961 2203 dbSNP
rs1364010542 2206 dbSNP
rs1184029120 2211 dbSNP
rs562899383 2215 dbSNP
rs980038826 2216 dbSNP
rs1240070438 2224 dbSNP
rs1400069112 2237 dbSNP
rs1030805941 2245 dbSNP
rs750474663 2254 dbSNP
rs997631291 2257 dbSNP
rs1335393033 2296 dbSNP
rs544996780 2298 dbSNP
rs1041901278 2299 dbSNP
rs1325464858 2303 dbSNP
rs1223972440 2306 dbSNP
rs1262448905 2310 dbSNP
rs1482271527 2311 dbSNP
rs1197035784 2312 dbSNP
rs1288533548 2317 dbSNP
rs1243083330 2323 dbSNP
rs750679781 2335 dbSNP
rs1436843449 2340 dbSNP
rs549156641 2342 dbSNP
rs947634719 2348 dbSNP
rs1362248509 2351 dbSNP
rs577845375 2370 dbSNP
rs765522509 2371 dbSNP
rs1176260198 2373 dbSNP
rs1228178327 2377 dbSNP
rs1376415328 2377 dbSNP
rs1168536167 2387 dbSNP
rs1016306511 2406 dbSNP
rs1408191078 2412 dbSNP
rs2975307 2419 dbSNP
rs1305193180 2437 dbSNP
rs1347098372 2438 dbSNP
rs182116669 2443 dbSNP
rs529571419 2445 dbSNP
rs1300417777 2446 dbSNP
rs1056058476 2456 dbSNP
rs13264353 2462 dbSNP
rs950883250 2465 dbSNP
rs1030471249 2469 dbSNP
rs754288811 2474 dbSNP
rs937644117 2486 dbSNP
rs1301402116 2493 dbSNP
rs562447348 2497 dbSNP
rs573836901 2498 dbSNP
rs1490427893 2507 dbSNP
rs1199142810 2511 dbSNP
rs949145308 2512 dbSNP
rs1265753994 2518 dbSNP
rs1430787716 2520 dbSNP
rs919085666 2523 dbSNP
rs560398292 2527 dbSNP
rs1372510544 2530 dbSNP
rs904164895 2531 dbSNP
rs1042709361 2532 dbSNP
rs971931173 2533 dbSNP
rs912984673 2541 dbSNP
rs1292711298 2542 dbSNP
rs1365259269 2543 dbSNP
rs555386446 2547 dbSNP
rs1296212294 2548 dbSNP
rs1363748357 2549 dbSNP
rs1225521912 2550 dbSNP
rs1359668590 2558 dbSNP
rs1221341490 2565 dbSNP
rs1427764596 2569 dbSNP
rs1263994861 2570 dbSNP
rs1056909874 2574 dbSNP
rs1487057886 2584 dbSNP
rs759434156 2596 dbSNP
rs938494460 2605 dbSNP
rs1219267451 2606 dbSNP
rs13263824 2612 dbSNP
rs927150256 2614 dbSNP
rs1185467127 2615 dbSNP
rs963211357 2618 dbSNP
rs1444187185 2621 dbSNP
rs1209852 2629 dbSNP
rs1267670990 2636 dbSNP
rs762351885 2638 dbSNP
rs1490687977 2639 dbSNP
rs963297375 2648 dbSNP
rs1289284627 2651 dbSNP
rs566651439 2665 dbSNP
rs953481296 2668 dbSNP
rs1432860117 2670 dbSNP
rs1316507786 2674 dbSNP
rs1030358069 2675 dbSNP
rs73379295 2678 dbSNP
rs140679038 2679 dbSNP
rs1298187842 2685 dbSNP
rs569031004 2687 dbSNP
rs1020325861 2692 dbSNP
rs1460929951 2702 dbSNP
rs1180273654 2703 dbSNP
rs1410420729 2704 dbSNP
rs965236316 2706 dbSNP
rs1159522276 2720 dbSNP
rs1017738519 2721 dbSNP
rs1011665088 2725 dbSNP
rs893318247 2731 dbSNP
rs1338655681 2736 dbSNP
rs775088278 2742 dbSNP
rs1281584501 2747 dbSNP
rs1001815872 2753 dbSNP
rs369815659 2756 dbSNP
rs1375033262 2771 dbSNP
rs117470298 2772 dbSNP
rs1327568227 2773 dbSNP
rs1225816054 2777 dbSNP
rs1307436023 2786 dbSNP
rs1264315760 2787 dbSNP
rs1312177821 2793 dbSNP
rs949115046 2797 dbSNP
rs189765458 2801 dbSNP
rs1176861345 2802 dbSNP
rs1250746525 2804 dbSNP
rs144226247 2809 dbSNP
rs918970013 2813 dbSNP
rs114961988 2819 dbSNP
rs1178397656 2820 dbSNP
rs938477721 2834 dbSNP
rs564607050 2836 dbSNP
rs1413879940 2841 dbSNP
rs7013513 2859 dbSNP
rs1428213377 2874 dbSNP
rs1442438827 2890 dbSNP
rs774159864 2890 dbSNP
rs1044252759 2893 dbSNP
rs1481163405 2899 dbSNP
rs941899070 2905 dbSNP
rs564997344 2930 dbSNP
rs1268990896 2932 dbSNP
rs1176057282 2933 dbSNP
rs186277758 2937 dbSNP
rs1367476210 2944 dbSNP
rs1218030693 2952 dbSNP
rs770673489 2965 dbSNP
rs1308184914 2966 dbSNP
rs867515539 2970 dbSNP
rs1272739124 2976 dbSNP
rs1490921439 2978 dbSNP
rs1201278418 2979 dbSNP
rs1479960050 2989 dbSNP
rs986436201 2991 dbSNP
rs1477630322 3019 dbSNP
rs1253577104 3020 dbSNP
rs983412374 3032 dbSNP
rs1410051514 3050 dbSNP
rs1323271248 3054 dbSNP
rs1261567799 3055 dbSNP
rs1368310156 3060 dbSNP
rs1225598105 3067 dbSNP
rs1346316046 3068 dbSNP
rs953352100 3068 dbSNP
rs1287844483 3070 dbSNP
rs929296328 3071 dbSNP
rs1434890905 3080 dbSNP
rs923261308 3094 dbSNP
rs976540565 3104 dbSNP
rs577685183 3106 dbSNP
rs967357488 3109 dbSNP
rs1361834738 3126 dbSNP
rs1223532442 3127 dbSNP
rs1442739663 3135 dbSNP
rs979580838 3137 dbSNP
rs1450830837 3150 dbSNP
rs1405064559 3153 dbSNP
rs1173912318 3155 dbSNP
rs1470753373 3166 dbSNP
rs1243758316 3183 dbSNP
rs533755475 3185 dbSNP
rs562575416 3186 dbSNP
rs1387832960 3187 dbSNP
rs1021143642 3206 dbSNP
rs1011635670 3208 dbSNP
rs1416763165 3210 dbSNP
rs1253373248 3211 dbSNP
rs957515384 3224 dbSNP
rs1034552038 3226 dbSNP
rs1320768712 3227 dbSNP
rs1346275773 3231 dbSNP
rs1435077390 3243 dbSNP
rs1318570431 3244 dbSNP
rs1385126836 3253 dbSNP
rs1461217201 3259 dbSNP
rs181500933 3268 dbSNP
rs891447670 3275 dbSNP
rs573648478 3291 dbSNP
rs1465271634 3298 dbSNP
rs1046407107 3322 dbSNP
rs1208051925 3323 dbSNP
rs1324565194 3323 dbSNP
rs769598199 3327 dbSNP
rs548248830 3336 dbSNP
rs1367526529 3339 dbSNP
rs1002996655 3340 dbSNP
rs1318808812 3346 dbSNP
rs1413192253 3364 dbSNP
rs897510850 3375 dbSNP
rs555583358 3376 dbSNP
rs1408321510 3379 dbSNP
rs1453461196 3381 dbSNP
rs1044197754 3382 dbSNP
rs1444694132 3388 dbSNP
rs941825696 3389 dbSNP
rs941784835 3395 dbSNP
rs1329641090 3420 dbSNP
rs878874978 3421 dbSNP
rs909028585 3426 dbSNP
rs376541779 3427 dbSNP
rs1325654705 3431 dbSNP
rs573127710 3436 dbSNP
rs1200500125 3450 dbSNP
rs1254933383 3453 dbSNP
rs1183579448 3455 dbSNP
rs191557884 3459 dbSNP
rs929249497 3464 dbSNP
rs1432072361 3469 dbSNP
rs539450299 3470 dbSNP
rs923228760 3474 dbSNP
rs748107157 3481 dbSNP
rs187130127 3483 dbSNP
rs943426439 3503 dbSNP
rs780069466 3507 dbSNP
rs910620688 3514 dbSNP
rs1406416423 3515 dbSNP
rs975982180 3516 dbSNP
rs1308870071 3526 dbSNP
rs979508727 3528 dbSNP
rs1287921430 3535 dbSNP
rs1408977497 3537 dbSNP
rs1286271373 3548 dbSNP
rs1347299508 3555 dbSNP
rs968183842 3559 dbSNP
rs1451075732 3561 dbSNP
rs1342270421 3562 dbSNP
rs967326500 3584 dbSNP
rs1197125018 3585 dbSNP
rs1274898651 3586 dbSNP
rs149647466 3588 dbSNP
rs535597323 3592 dbSNP
rs914107031 3595 dbSNP
rs1434208419 3601 dbSNP
rs568437053 3602 dbSNP
rs1159114426 3615 dbSNP
rs1463601320 3617 dbSNP
rs988763515 3620 dbSNP
rs544739654 3621 dbSNP
rs1035739934 3627 dbSNP
rs547203018 3629 dbSNP
rs181623460 3639 dbSNP
rs771039647 3653 dbSNP
rs990179959 3665 dbSNP
rs969734696 3666 dbSNP
rs1300524198 3672 dbSNP
rs1329333439 3673 dbSNP
rs1228973448 3677 dbSNP
rs1185865220 3684 dbSNP
rs1297738511 3688 dbSNP
rs576080602 3691 dbSNP
rs571147183 3699 dbSNP
rs1340988893 3700 dbSNP
rs1462021499 3703 dbSNP
rs1294349390 3708 dbSNP
rs1022719718 3714 dbSNP
rs189282474 3736 dbSNP
rs1209705207 3739 dbSNP
rs1265866529 3741 dbSNP
rs957511385 3744 dbSNP
rs1006010002 3748 dbSNP
rs1034930169 3752 dbSNP
rs980256167 3753 dbSNP
rs1203601854 3764 dbSNP
rs887577973 3766 dbSNP
rs1369924420 3769 dbSNP
rs1486938314 3781 dbSNP
rs1261388739 3789 dbSNP
rs971980149 3794 dbSNP
rs1358666869 3795 dbSNP
rs993800676 3801 dbSNP
rs532970195 3802 dbSNP
rs1024534687 3805 dbSNP
rs1040721321 3807 dbSNP
rs1247986590 3813 dbSNP
rs994441552 3826 dbSNP
rs897479769 3832 dbSNP
rs531343294 3834 dbSNP
rs1314447675 3836 dbSNP
rs758481976 3844 dbSNP
rs184997814 3845 dbSNP
rs910591037 3849 dbSNP
rs1014628924 3856 dbSNP
rs1380178260 3860 dbSNP
rs1209939700 3861 dbSNP
rs1043780527 3866 dbSNP
rs544224479 3868 dbSNP
rs1414798308 3869 dbSNP
rs1423506296 3881 dbSNP
rs1005969000 3883 dbSNP
rs1366525098 3888 dbSNP
rs887494033 3893 dbSNP
rs529013531 3894 dbSNP
rs1387207058 3898 dbSNP
rs914017064 3904 dbSNP
rs1050604989 3917 dbSNP
rs988345483 3919 dbSNP
rs1288964363 3920 dbSNP
rs1395114018 3922 dbSNP
rs1423432457 3937 dbSNP
rs931803042 3944 dbSNP
rs1229487573 3948 dbSNP
rs1166012601 3949 dbSNP
rs961191400 3952 dbSNP
rs1445678550 3954 dbSNP
rs901691023 3955 dbSNP
rs1483022935 3964 dbSNP
rs1372882093 3965 dbSNP
rs1180373434 3976 dbSNP
rs1040249112 3983 dbSNP
rs981061281 3989 dbSNP
rs1209853 3990 dbSNP
rs369309962 3997 dbSNP
rs78716787 4001 dbSNP
rs1359268782 4026 dbSNP
rs990150058 4027 dbSNP
rs536426985 4030 dbSNP
rs936003273 4033 dbSNP
rs1022647613 4035 dbSNP
rs572903212 4039 dbSNP
rs927367331 4042 dbSNP
rs1352009667 4045 dbSNP
rs1410820765 4048 dbSNP
rs1288160064 4050 dbSNP
rs746503544 4071 dbSNP
rs1221460303 4080 dbSNP
rs980607436 4084 dbSNP
rs1311688290 4103 dbSNP
rs1208215712 4106 dbSNP
rs1277023051 4114 dbSNP
rs1483544130 4115 dbSNP
rs1182595181 4122 dbSNP
rs748782373 4132 dbSNP
rs754127803 4133 dbSNP
rs993330008 4137 dbSNP
rs557638887 4141 dbSNP
rs370306211 4159 dbSNP
rs1007463524 4161 dbSNP
rs889081654 4171 dbSNP
rs1307753770 4174 dbSNP
rs1209854 4175 dbSNP
rs961659101 4178 dbSNP
rs1439147069 4186 dbSNP
rs764538798 4186 dbSNP
rs1005850130 4192 dbSNP
rs1367592517 4194 dbSNP
rs1217545414 4196 dbSNP
rs887451157 4198 dbSNP
rs1403869360 4204 dbSNP
rs1204732483 4205 dbSNP
rs1028716439 4213 dbSNP
rs180805871 4219 dbSNP
rs1247209059 4222 dbSNP
rs1488138658 4232 dbSNP
rs189570911 4235 dbSNP
rs535465120 4238 dbSNP
rs939532491 4241 dbSNP
rs1396351609 4243 dbSNP
rs568555755 4244 dbSNP
rs1040216848 4252 dbSNP
rs1132533 4261 dbSNP
rs915558736 4262 dbSNP
rs948288807 4262 dbSNP
rs1463829795 4263 dbSNP
rs984470990 4271 dbSNP
rs1366027804 4272 dbSNP
rs1227872649 4273 dbSNP
rs553162578 4277 dbSNP
rs535225043 4279 dbSNP
rs1007934293 4282 dbSNP
rs1358818404 4283 dbSNP
rs570917211 4284 dbSNP
rs1132534 4290 dbSNP
rs1290386321 4295 dbSNP
rs1320990195 4296 dbSNP
rs1211771011 4299 dbSNP
rs1249277842 4301 dbSNP
rs1054309903 4302 dbSNP
rs1187452954 4308 dbSNP
rs184752294 4322 dbSNP
rs79881333 4325 dbSNP
rs972261349 4332 dbSNP
rs570344620 4341 dbSNP
rs1452133266 4359 dbSNP
rs1460301635 4363 dbSNP
rs1249705382 4365 dbSNP
rs927304961 4369 dbSNP
rs980194096 4370 dbSNP
rs965897255 4372 dbSNP
rs1341207418 4376 dbSNP
rs1318664148 4380 dbSNP
rs950210505 4387 dbSNP
rs1449055784 4388 dbSNP
rs552246390 4403 dbSNP
rs550632236 4405 dbSNP
rs756535424 4406 dbSNP
rs961543859 4409 dbSNP
rs1207519812 4410 dbSNP
rs753257319 4415 dbSNP
rs1281587517 4416 dbSNP
rs1022222945 4420 dbSNP
rs1187853839 4429 dbSNP
rs528851548 4432 dbSNP
rs561844859 4441 dbSNP
rs1010889396 4443 dbSNP
rs1474423218 4448 dbSNP
rs910105256 4455 dbSNP
rs1335733462 4457 dbSNP
rs984796197 4463 dbSNP
rs951725813 4467 dbSNP
rs1327398153 4471 dbSNP
rs1457218807 4489 dbSNP
rs376586291 4494 dbSNP
rs1415184133 4503 dbSNP
rs1333774944 4504 dbSNP
rs528177837 4506 dbSNP
rs533618359 4515 dbSNP
rs1052524566 4516 dbSNP
rs1351011831 4520 dbSNP
rs939441876 4525 dbSNP
rs767078065 4531 dbSNP
rs1018652357 4532 dbSNP
rs1177307044 4533 dbSNP
rs1277471728 4537 dbSNP
rs1484507746 4539 dbSNP
rs1469665617 4540 dbSNP
rs1232301194 4543 dbSNP
rs1253011486 4546 dbSNP
rs1472526405 4548 dbSNP
rs138325734 4552 dbSNP
rs1439428934 4553 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 58500.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcucacACUCUAG-UGUGGAGGg 5'
                ||  |||  ||||||| 
Target 5' -cucacUGCAAUCUCCACCUCCc 3'
 		1 - 22
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_021061 | 3UTR | CACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_021061 | 3UTR | CCACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001109689 | 3UTR | CAAUCUCCACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001109689 | 3UTR | CUCCACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001109689 | 3UTR | UCCACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001109689 | 3UTR | CUCCACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001109689 | 3UTR | CAAUCUCCACCUCCCAGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000292579.7 | 3UTR | CUCACUGCAAUCUCCACCUCCCAGGUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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