miRTarBase - #MIRT518558


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pre-miRNA Information
pre-miRNA hsa-mir-5590   
Genomic Coordinates chr2: 134857820 - 134857873
Description Homo sapiens miR-5590 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5590-5p
Sequence 1| UUGCCAUACAUAGACUUUAUU |21
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs553031425 1 dbSNP
rs1255264134 4 dbSNP
rs1205476379 9 dbSNP
rs1387316331 10 dbSNP
rs1031241138 11 dbSNP
rs1465409255 12 dbSNP
rs1227248415 18 dbSNP
rs1334861447 19 dbSNP
Putative Targets

Gene Information
Gene Symbol GDPD1   
Synonyms GDE4
Description glycerophosphodiester phosphodiesterase domain containing 1
Transcript NM_182569   
Other Transcripts NM_001165994 , NM_001165993   
Expression
Putative miRNA Targets on GDPD1
3'UTR of GDPD1
(miRNA target sites are highlighted)		 
>GDPD1|NM_182569|3'UTR
   1 AAAAAGAGGTACTTAGAAGTATTGAAGGAAAAAATGAAGACCTAAGAAAAAAATATTTCATGATCATTTCCCTAAGCCAT
  81 TTCCAGAATGGTAAAAGGTTTAATCAGTTTTTATTACCTCATTTTTAAGCCTGTATGAGAATGTAGAAACTATATATTAT
 161 ATGTATATTTATTTTAAATAATATTGTATATTTTATGTTTGTAAATTGTTTAGAAAGATAATTGGTTATGAGATGTAAGT
 241 TTTAATTTCTTAATGTGCATTTTTGTTTCTAGATCTTATACAGAAATCTTGATTAATAACATACACAGAAATGTACATAC
 321 TACATCATCTACAGAAATCTTGATCAATAACCTAGAAACTAGGTTATCTAGGTTATTGATCAAGATTTCTGTAGATGATG
 401 CAGTGTTCTATCATAAGTAATTCTGGAATCAAAGACTATTGGATACATTTGGCATTGGGCTGAGTGTGGTGGCTCATGCC
 481 TGTAATCCCAGCACTTTGGGAGGCTGAGACAGGCGGATCATCTGAAGTCAGGAGTTAAAGACCAGCCTGGCCAACATGGC
 561 AAAACCCCATCTCTACCAAAAATACAAAAATTAACCATGCGTGGTGGTACACGTCTGTCATCCCAGCAGCTCTTAAGGCT
 641 GAGGCACAAGAATTGCTTGAACCCGGGAGGCAGAGGCTGTAGTGAGCCAAGATAGCACCACTGCACTCCAGCCTGGGAGA
 721 CAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGA
 801 TCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGCAC
 881 CTTAGTCCCAGCTACTCGGGAGGCTGAGTCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCG
 961 CGCCACTGCACTCCAGCCTGGGCTACAGAGCAAGACTCCGTCTCAAAAAAAGAAAAAAAGAAAAAAAATTGGCAATAGTC
1041 TTCACTGGAATACAATCAATTAGTAAAAGATTTTTTTTTTTTTTTTGACATGTAGTCTTGCTCTGTCGCCGAGGCCGGAG
1121 TGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCCAGCAATTCTCCTGCCTCTGCCTCCCGAGTACC
1201 TGGGATTACAGGTGCCTGCTACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCACGTTGGCCAGA
1281 CTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCTCAAAGTGCTGGGATTACAGGTTTGAACCACTGC
1361 ACCCGGCCAGTAAAAGAAATTTTGAAGGCCATTGCAGCTATTTGGTAGTGTCTTGTTATTTCTAGGTGTACCTTAGTTAA
1441 AGAGGAAAAATAAAACGGAAAAAAGCTTGGAAATCAGTGATGTGTAGTTATTTGGCAAGTTATACATAATCAGCAGCAGC
1521 CAGGCTCAAGAAAATAAAAGTTGATTAGTTGATCAGAAATAAAATCTGTAGAGTGAATTAGATTTCTGAGTTGTTGTTGT
1601 TAATGGAACATTCTATTTGAGACCTTTTTCAGGTGTGTAGCAATTCTACCATGTCCATTTTTTTAAGCATTAAAAAGGAA
1681 CTTACCAGTTGTAAATTAAGACAAGATCCAAATAGTCATATTTTTGTGTTTCCTCTAAAAAAATGTAAGATTTCCATTTT
1761 TGGCACTGACTAACTGAGCCTACATCTAGATTTTAAATACCATCTTGAATCCTAATAATTAAACTGATGAAAGTGCATAT
1841 CATTGTTCCTAACATTTATGAACCCCCATAAAGATGTTCCTGATCTTTAAAACTCATTAATCTGAGTATTAAGTAGAAAC
1921 AGAATTTTCCAAAGCATTAGACATCACTTTCTCAGTTTATCTGAGGTGACTTCGTGTACATCTGTTTCTAATATATTTGA
2001 CTAATTTTCATGATCTCAGATTGTGAGGTAAATGTAATCTGGAATAATAAGTGTCTTTTACCTAGATTACATCTCTCATT
2081 TGGAGTTTGGCAATGAAACTGCTATGAAGAATGACTGTACTCTCCTATCTGTCCCTGGATGACATAAATATCATTTGCTT
2161 TGTTGTTTAAACTGAAATAAAGTTTTCCAAGAACAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuAUUUCAGAU--ACAUACCGUu 5'
            |:| || ||  | | ||||| 
Target 5' agTGATGTGTAGTTATTTGGCAa 3'
 1476 - 1498 125.00 -10.10
2 
miRNA  3' uuaUUUCAGAUA--C-----AUACCGUu 5'
             |||| ||||  |     | ||||| 
Target 5' atcAAAGACTATTGGATACATTTGGCAt 3'
 428 - 455 124.00 -6.70
3 
miRNA  3' uuauuucagauacaUACCGUu 5'
                        |||||| 
Target 5' ccagcctggccaacATGGCAa 3'
 542 - 562 120.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30168655 16 COSMIC
COSN30112643 25 COSMIC
COSN28887248 30 COSMIC
COSN30112673 40 COSMIC
COSN30116849 54 COSMIC
COSN28876523 56 COSMIC
COSN30112667 63 COSMIC
COSN30532481 89 COSMIC
COSN30112605 138 COSMIC
COSN31549352 147 COSMIC
COSN31558456 163 COSMIC
COSN28718322 236 COSMIC
COSN9671673 307 COSMIC
COSN20305482 426 COSMIC
COSN21695701 642 COSMIC
COSN25724195 719 COSMIC
COSN25723635 720 COSMIC
COSN28502920 727 COSMIC
COSN21688082 827 COSMIC
COSN26178906 918 COSMIC
COSN31924954 1328 COSMIC
COSM437038 1405 COSMIC
COSN19698040 1460 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1367183721 1 dbSNP
rs773760797 3 dbSNP
rs1225370838 10 dbSNP
rs1405376515 10 dbSNP
rs763487274 11 dbSNP
rs1326304792 15 dbSNP
rs1161665483 22 dbSNP
rs1335457604 23 dbSNP
rs1386455488 24 dbSNP
rs1456809336 28 dbSNP
rs1319752341 29 dbSNP
rs1398154415 37 dbSNP
rs1368277811 40 dbSNP
rs1388264783 42 dbSNP
rs1299014628 43 dbSNP
rs766449180 44 dbSNP
rs1228564285 47 dbSNP
rs751552131 48 dbSNP
rs1374087003 56 dbSNP
rs1310677949 62 dbSNP
rs1255370953 64 dbSNP
rs1390441486 66 dbSNP
rs561963861 68 dbSNP
rs1169097563 81 dbSNP
rs149948295 104 dbSNP
rs1019179435 107 dbSNP
rs1188118276 136 dbSNP
rs906653470 139 dbSNP
rs1005149606 140 dbSNP
rs967015127 154 dbSNP
rs977092376 157 dbSNP
rs1210399839 161 dbSNP
rs1275410978 167 dbSNP
rs1483480973 167 dbSNP
rs1194090506 168 dbSNP
rs1157664588 172 dbSNP
rs183004933 179 dbSNP
rs1033100822 181 dbSNP
rs1401697575 185 dbSNP
rs559397907 207 dbSNP
rs9912546 214 dbSNP
rs899411019 219 dbSNP
rs1353921215 226 dbSNP
rs957104505 229 dbSNP
rs995157067 236 dbSNP
rs1330483162 253 dbSNP
rs1026604664 264 dbSNP
rs953855427 280 dbSNP
rs539333774 288 dbSNP
rs915718135 292 dbSNP
rs751788149 296 dbSNP
rs1007017945 302 dbSNP
rs1163746459 310 dbSNP
rs1414730167 312 dbSNP
rs188447740 313 dbSNP
rs553267957 317 dbSNP
rs1357486064 323 dbSNP
rs144126313 324 dbSNP
rs1180001321 326 dbSNP
rs1437294568 341 dbSNP
rs530447356 348 dbSNP
rs957924318 354 dbSNP
rs1215672420 356 dbSNP
rs1333271320 356 dbSNP
rs989521719 356 dbSNP
rs1279243674 357 dbSNP
rs1229326680 359 dbSNP
rs1351093664 359 dbSNP
rs899181630 359 dbSNP
rs1225319941 362 dbSNP
rs1376064761 363 dbSNP
rs757581113 363 dbSNP
rs1278085182 365 dbSNP
rs1485270890 366 dbSNP
rs1280909674 367 dbSNP
rs1439631604 375 dbSNP
rs1334626518 376 dbSNP
rs550014876 384 dbSNP
rs930717638 385 dbSNP
rs1211512892 391 dbSNP
rs866371477 436 dbSNP
rs190202908 439 dbSNP
rs1392128402 453 dbSNP
rs368037655 460 dbSNP
rs889274111 465 dbSNP
rs1457561679 474 dbSNP
rs536045360 484 dbSNP
rs1157016975 492 dbSNP
rs1019148209 493 dbSNP
rs1247538559 505 dbSNP
rs916549375 506 dbSNP
rs1195519266 507 dbSNP
rs1467202341 509 dbSNP
rs1252921024 510 dbSNP
rs1364054758 512 dbSNP
rs1319078539 515 dbSNP
rs948163768 517 dbSNP
rs1282642852 530 dbSNP
rs1223608984 535 dbSNP
rs1349441533 536 dbSNP
rs903413378 537 dbSNP
rs999066121 539 dbSNP
rs1368224066 543 dbSNP
rs1393667812 559 dbSNP
rs1046892386 561 dbSNP
rs1435777961 568 dbSNP
rs1346927470 578 dbSNP
rs547701481 586 dbSNP
rs566148144 591 dbSNP
rs1174845729 596 dbSNP
rs957274591 598 dbSNP
rs940883809 601 dbSNP
rs1036469599 602 dbSNP
rs1023160067 604 dbSNP
rs1394601993 607 dbSNP
rs971214501 611 dbSNP
rs539905700 612 dbSNP
rs995041154 613 dbSNP
rs1048057828 614 dbSNP
rs757054524 618 dbSNP
rs1346920124 623 dbSNP
rs889411675 630 dbSNP
rs1215442582 636 dbSNP
rs1443358781 639 dbSNP
rs961242825 641 dbSNP
rs543083213 644 dbSNP
rs28448410 647 dbSNP
rs1234866778 648 dbSNP
rs1282444005 655 dbSNP
rs778737720 657 dbSNP
rs7221672 659 dbSNP
rs1214669420 662 dbSNP
rs1363921975 663 dbSNP
rs142165369 666 dbSNP
rs1439129296 673 dbSNP
rs1191398566 677 dbSNP
rs1251474160 678 dbSNP
rs1050531219 680 dbSNP
rs1454148795 681 dbSNP
rs1375902936 684 dbSNP
rs11653857 685 dbSNP
rs1379951134 690 dbSNP
rs1433133039 692 dbSNP
rs1460518637 695 dbSNP
rs1167347829 698 dbSNP
rs1375100529 702 dbSNP
rs1397306701 709 dbSNP
rs1417909593 715 dbSNP
rs1467340703 718 dbSNP
rs1324162184 719 dbSNP
rs1369944612 720 dbSNP
rs1260105451 724 dbSNP
rs555693592 725 dbSNP
rs1305527126 726 dbSNP
rs1324671859 727 dbSNP
rs1226616635 728 dbSNP
rs1251348415 732 dbSNP
rs1340894490 733 dbSNP
rs944801514 734 dbSNP
rs1213960175 735 dbSNP
rs1228548407 738 dbSNP
rs1251147813 739 dbSNP
rs1355815404 739 dbSNP
rs369128912 739 dbSNP
rs1170322706 740 dbSNP
rs1177488222 740 dbSNP
rs1178716412 740 dbSNP
rs1186187301 740 dbSNP
rs1337992411 740 dbSNP
rs1375012780 740 dbSNP
rs1420683286 740 dbSNP
rs1462389921 740 dbSNP
rs1475089251 740 dbSNP
rs1481317725 740 dbSNP
rs35411377 740 dbSNP
rs1272199438 741 dbSNP
rs1468317376 742 dbSNP
rs1194720664 743 dbSNP
rs1269930225 745 dbSNP
rs1427187914 747 dbSNP
rs1193136332 748 dbSNP
rs1373668170 755 dbSNP
rs1274988142 756 dbSNP
rs1398141026 756 dbSNP
rs1231152840 757 dbSNP
rs1040481461 764 dbSNP
rs1478870750 764 dbSNP
rs896790906 765 dbSNP
rs1394104856 766 dbSNP
rs1461754106 768 dbSNP
rs1295006319 769 dbSNP
rs573901882 772 dbSNP
rs994251634 774 dbSNP
rs1382554906 778 dbSNP
rs541200832 779 dbSNP
rs1163488446 781 dbSNP
rs1461241356 782 dbSNP
rs1029890602 783 dbSNP
rs1364791943 787 dbSNP
rs1296272641 788 dbSNP
rs1341807630 789 dbSNP
rs1248002820 790 dbSNP
rs1055143357 792 dbSNP
rs1468541825 793 dbSNP
rs1230997115 798 dbSNP
rs1292283202 800 dbSNP
rs1333853900 803 dbSNP
rs1261052852 812 dbSNP
rs892784164 815 dbSNP
rs1013034241 818 dbSNP
rs1022702651 821 dbSNP
rs376733271 822 dbSNP
rs1441730286 826 dbSNP
rs1215182332 848 dbSNP
rs1267563962 851 dbSNP
rs756709375 863 dbSNP
rs1324449947 867 dbSNP
rs1440879257 868 dbSNP
rs1205035037 869 dbSNP
rs1263092284 873 dbSNP
rs559321504 875 dbSNP
rs971099142 875 dbSNP
rs1452096015 885 dbSNP
rs955836639 887 dbSNP
rs1157745053 888 dbSNP
rs1185968786 892 dbSNP
rs1015409497 893 dbSNP
rs1396411471 894 dbSNP
rs961229986 905 dbSNP
rs1417261696 908 dbSNP
rs1262362378 910 dbSNP
rs1475618133 922 dbSNP
rs1167206454 923 dbSNP
rs974001169 928 dbSNP
rs1350110886 930 dbSNP
rs1301282131 932 dbSNP
rs1233683813 936 dbSNP
rs1327468719 938 dbSNP
rs1452843412 939 dbSNP
rs1298378093 941 dbSNP
rs1380880665 942 dbSNP
rs1297176497 946 dbSNP
rs919879339 947 dbSNP
rs1376920093 951 dbSNP
rs952071211 954 dbSNP
rs1412874619 955 dbSNP
rs182418599 956 dbSNP
rs139935583 960 dbSNP
rs1229628325 961 dbSNP
rs1304477038 962 dbSNP
rs186702989 963 dbSNP
rs1278469511 969 dbSNP
rs1238864814 971 dbSNP
rs145353075 983 dbSNP
rs1340227124 986 dbSNP
rs1489521968 987 dbSNP
rs1209355377 991 dbSNP
rs1294238720 992 dbSNP
rs1356898344 993 dbSNP
rs1310768266 1001 dbSNP
rs1256841401 1005 dbSNP
rs944770450 1005 dbSNP
rs1486070228 1007 dbSNP
rs1183787959 1010 dbSNP
rs1460362941 1012 dbSNP
rs1007043608 1013 dbSNP
rs1418273715 1020 dbSNP
rs1040448885 1021 dbSNP
rs1255664760 1021 dbSNP
rs1476070000 1021 dbSNP
rs1159494478 1025 dbSNP
rs1381945030 1027 dbSNP
rs924768324 1030 dbSNP
rs1030837898 1036 dbSNP
rs957947215 1038 dbSNP
rs989355794 1039 dbSNP
rs1054710901 1040 dbSNP
rs893410267 1042 dbSNP
rs530415805 1047 dbSNP
rs1044045192 1052 dbSNP
rs1296087337 1068 dbSNP
rs1336011708 1069 dbSNP
rs1389196236 1070 dbSNP
rs62083296 1070 dbSNP
rs1162859807 1071 dbSNP
rs1470612483 1071 dbSNP
rs781384753 1071 dbSNP
rs982121258 1071 dbSNP
rs539736175 1073 dbSNP
rs1391623632 1074 dbSNP
rs1015377015 1075 dbSNP
rs1181843705 1088 dbSNP
rs1232718680 1089 dbSNP
rs111389579 1090 dbSNP
rs1280294583 1093 dbSNP
rs1224705328 1095 dbSNP
rs1312845926 1100 dbSNP
rs1212410788 1106 dbSNP
rs1249704866 1108 dbSNP
rs1480392977 1109 dbSNP
rs961199145 1110 dbSNP
rs1326476252 1111 dbSNP
rs1443068401 1112 dbSNP
rs1392241660 1113 dbSNP
rs529594003 1114 dbSNP
rs1401079618 1117 dbSNP
rs754445454 1118 dbSNP
rs1239721728 1119 dbSNP
rs1395809337 1125 dbSNP
rs12939942 1126 dbSNP
rs1195609806 1127 dbSNP
rs1452395883 1132 dbSNP
rs995780554 1143 dbSNP
rs1192895215 1149 dbSNP
rs1216874360 1150 dbSNP
rs1449166928 1153 dbSNP
rs940782011 1155 dbSNP
rs954059895 1161 dbSNP
rs1415667352 1162 dbSNP
rs985413723 1168 dbSNP
rs1303452147 1179 dbSNP
rs192588305 1180 dbSNP
rs12941518 1187 dbSNP
rs1365334467 1190 dbSNP
rs966044996 1194 dbSNP
rs1431180595 1195 dbSNP
rs1346795097 1199 dbSNP
rs184772782 1200 dbSNP
rs976119156 1218 dbSNP
rs1419283460 1236 dbSNP
rs920730857 1242 dbSNP
rs1333014569 1243 dbSNP
rs924738622 1244 dbSNP
rs1425080575 1251 dbSNP
rs1187678305 1256 dbSNP
rs768385181 1261 dbSNP
rs1050614510 1272 dbSNP
rs889473177 1273 dbSNP
rs188418348 1276 dbSNP
rs193020193 1280 dbSNP
rs570206878 1290 dbSNP
rs1326398440 1300 dbSNP
rs1207607477 1305 dbSNP
rs900959797 1310 dbSNP
rs1044698963 1313 dbSNP
rs1189828755 1314 dbSNP
rs1267039633 1321 dbSNP
rs1420052937 1322 dbSNP
rs1184567004 1328 dbSNP
rs1364023858 1331 dbSNP
rs1410064289 1335 dbSNP
rs755524778 1341 dbSNP
rs906850885 1345 dbSNP
rs1165801982 1355 dbSNP
rs999270708 1357 dbSNP
rs1356257739 1358 dbSNP
rs1036777032 1363 dbSNP
rs1291732635 1364 dbSNP
rs781614829 1365 dbSNP
rs778560482 1366 dbSNP
rs1289806700 1368 dbSNP
rs185166553 1369 dbSNP
rs1227237314 1376 dbSNP
rs1312881439 1381 dbSNP
rs1323013058 1383 dbSNP
rs555507236 1389 dbSNP
rs1265401802 1392 dbSNP
rs995271111 1393 dbSNP
rs1227077704 1394 dbSNP
rs893618778 1398 dbSNP
rs1249853468 1407 dbSNP
rs745493151 1416 dbSNP
rs1188735353 1420 dbSNP
rs1027211621 1425 dbSNP
rs1292687345 1427 dbSNP
rs771588336 1428 dbSNP
rs1360826876 1433 dbSNP
rs1216280412 1437 dbSNP
rs776098228 1442 dbSNP
rs1261494925 1443 dbSNP
rs1217785582 1446 dbSNP
rs147660820 1457 dbSNP
rs190012675 1458 dbSNP
rs1367866851 1462 dbSNP
rs1430128454 1467 dbSNP
rs1309690144 1470 dbSNP
rs1019513426 1471 dbSNP
rs982559960 1485 dbSNP
rs1035018387 1499 dbSNP
rs765556470 1502 dbSNP
rs553255596 1505 dbSNP
rs976088092 1514 dbSNP
rs1444477630 1517 dbSNP
rs1398656944 1519 dbSNP
rs549381624 1528 dbSNP
rs1462274210 1544 dbSNP
rs1460611102 1547 dbSNP
rs1325573659 1550 dbSNP
rs1421634963 1565 dbSNP
rs763609967 1575 dbSNP
rs1412634845 1584 dbSNP
rs537678462 1590 dbSNP
rs1481364865 1602 dbSNP
rs930784037 1624 dbSNP
rs1236276518 1625 dbSNP
rs766928812 1631 dbSNP
rs1197992120 1633 dbSNP
rs986251573 1634 dbSNP
rs1468726966 1638 dbSNP
rs1197247569 1645 dbSNP
rs567637256 1651 dbSNP
rs1321289793 1657 dbSNP
rs1307982875 1658 dbSNP
rs910820729 1660 dbSNP
rs944977183 1663 dbSNP
rs948939806 1686 dbSNP
rs1219399635 1689 dbSNP
rs1397347352 1693 dbSNP
rs1292088589 1694 dbSNP
rs1457720668 1695 dbSNP
rs1367522656 1699 dbSNP
rs1159460556 1701 dbSNP
rs1041145795 1720 dbSNP
rs928908232 1722 dbSNP
rs1177505472 1736 dbSNP
rs938925433 1737 dbSNP
rs75358130 1744 dbSNP
rs900796036 1745 dbSNP
rs935085259 1746 dbSNP
rs9893593 1767 dbSNP
rs1453131781 1769 dbSNP
rs1261506911 1779 dbSNP
rs896837336 1790 dbSNP
rs11553495 1792 dbSNP
rs893545587 1802 dbSNP
rs1351821164 1807 dbSNP
rs1308559701 1808 dbSNP
rs931028851 1815 dbSNP
rs1213520998 1819 dbSNP
rs1241516720 1825 dbSNP
rs1010768538 1827 dbSNP
rs1299897551 1829 dbSNP
rs1193589749 1837 dbSNP
rs150277673 1840 dbSNP
rs1023464981 1863 dbSNP
rs1048170103 1863 dbSNP
rs1289059803 1864 dbSNP
rs889598404 1865 dbSNP
rs181151673 1869 dbSNP
rs1157470517 1870 dbSNP
rs1434805597 1870 dbSNP
rs575023657 1875 dbSNP
rs1196743911 1882 dbSNP
rs1035435483 1883 dbSNP
rs961995992 1888 dbSNP
rs993555645 1894 dbSNP
rs1027724615 1900 dbSNP
rs549966898 1903 dbSNP
rs986746366 1913 dbSNP
rs1211676525 1921 dbSNP
rs767616312 1921 dbSNP
rs1032064795 1922 dbSNP
rs1254750408 1928 dbSNP
rs1233214170 1935 dbSNP
rs956076501 1974 dbSNP
rs1298124888 1977 dbSNP
rs966705145 1984 dbSNP
rs116197570 1993 dbSNP
rs1297271899 1994 dbSNP
rs1414853009 1996 dbSNP
rs1403768198 1999 dbSNP
rs1407478334 2005 dbSNP
rs1170330715 2010 dbSNP
rs1465438677 2028 dbSNP
rs1373586439 2029 dbSNP
rs922274562 2033 dbSNP
rs935010192 2041 dbSNP
rs1262722265 2043 dbSNP
rs1052080817 2044 dbSNP
rs1444175315 2048 dbSNP
rs1372333268 2049 dbSNP
rs1300037326 2053 dbSNP
rs1353673220 2055 dbSNP
rs1199968065 2082 dbSNP
rs145863354 2084 dbSNP
rs1340609386 2085 dbSNP
rs915032160 2090 dbSNP
rs1285053748 2093 dbSNP
rs528109118 2100 dbSNP
rs946441581 2105 dbSNP
rs1277157907 2116 dbSNP
rs541313693 2117 dbSNP
rs752902436 2118 dbSNP
rs904985080 2124 dbSNP
rs1331558461 2126 dbSNP
rs928790513 2128 dbSNP
rs200061126 2129 dbSNP
rs1397114968 2133 dbSNP
rs1221922986 2136 dbSNP
rs746770689 2139 dbSNP
rs564300388 2140 dbSNP
rs1003889945 2151 dbSNP
rs960255626 2152 dbSNP
rs1056355875 2153 dbSNP
rs897734222 2156 dbSNP
rs1165421819 2158 dbSNP
rs993485179 2163 dbSNP
rs1027612131 2176 dbSNP
rs183732716 2183 dbSNP
rs918235412 2191 dbSNP
rs1438534156 2197 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 284161.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000284116.4 | 3UTR | CAAAACCCCAUCUCUACCAAAAAUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-5590-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056313 WAC WW domain containing adaptor with coiled-coil 2 6
MIRT066181 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma 2 2
MIRT095612 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT099166 MYLIP myosin regulatory light chain interacting protein 2 2
MIRT107578 VLDLR very low density lipoprotein receptor 2 2
MIRT179602 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 8
MIRT241303 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT244620 MCM4 minichromosome maintenance complex component 4 2 2
MIRT270705 SBNO1 strawberry notch homolog 1 2 4
MIRT453616 SNRPE small nuclear ribonucleoprotein polypeptide E 2 4
MIRT453653 RAB6C RAB6C, member RAS oncogene family 2 2
MIRT464159 VMP1 vacuole membrane protein 1 2 15
MIRT477720 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 2 2
MIRT484301 ENDOD1 endonuclease domain containing 1 2 4
MIRT496069 GLCCI1 glucocorticoid induced 1 2 2
MIRT496338 TMEM81 transmembrane protein 81 2 2
MIRT496653 PITPNM3 PITPNM family member 3 2 2
MIRT499098 DENND4C DENN domain containing 4C 2 8
MIRT499862 SVOP SV2 related protein 2 12
MIRT504913 CD38 CD38 molecule 2 4
MIRT515401 WDR72 WD repeat domain 72 2 4
MIRT518156 TMEM133 transmembrane protein 133 2 2
MIRT518558 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT518636 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT518724 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT524301 CTC1 CST telomere replication complex component 1 2 4
MIRT524472 CHRM3 cholinergic receptor muscarinic 3 2 4
MIRT527562 ADCY7 adenylate cyclase 7 2 2
MIRT532694 TCN2 transcobalamin 2 2 4
MIRT534640 RNF6 ring finger protein 6 2 2
MIRT537163 GGCX gamma-glutamyl carboxylase 2 2
MIRT539360 AFF4 AF4/FMR2 family member 4 2 2
MIRT547023 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT548155 FRAT2 FRAT2, WNT signaling pathway regulator 2 2
MIRT550127 ZNF138 zinc finger protein 138 2 2
MIRT558473 DBN1 drebrin 1 2 2
MIRT566862 LRRC58 leucine rich repeat containing 58 2 2
MIRT567246 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT572848 BRPF3 bromodomain and PHD finger containing 3 2 2
MIRT574914 Vmp1 vacuole membrane protein 1 2 9
MIRT606849 RAB7A RAB7A, member RAS oncogene family 2 2
MIRT611274 RBMXL1 RNA binding motif protein, X-linked like 1 2 2
MIRT612328 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT612415 SP1 Sp1 transcription factor 2 2
MIRT614791 RRAGC Ras related GTP binding C 2 2
MIRT618449 SERPINA3 serpin family A member 3 2 2
MIRT621154 MICALCL MICAL C-terminal like 2 2
MIRT622141 SOX4 SRY-box 4 2 2
MIRT623504 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT623598 IPO9 importin 9 2 2
MIRT624075 EBF1 early B-cell factor 1 2 2
MIRT639792 MVK mevalonate kinase 2 2
MIRT641109 ZNF274 zinc finger protein 274 2 2
MIRT641579 RFX1 regulatory factor X1 2 2
MIRT643095 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT645141 CUBN cubilin 2 2
MIRT646461 PRDM10 PR/SET domain 10 2 2
MIRT650815 HMOX1 heme oxygenase 1 2 2
MIRT653073 ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 2 2
MIRT657675 GPR26 G protein-coupled receptor 26 2 2
MIRT665824 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT695592 TMEM199 transmembrane protein 199 2 2
MIRT698039 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT701015 PCGF5 polycomb group ring finger 5 2 2
MIRT701357 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT707114 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT718661 HNF4A hepatocyte nuclear factor 4 alpha 2 2
MIRT719901 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT720564 C1RL complement C1r subcomponent like 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-5590-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)

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