pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol WSB1   
Synonyms SWIP1, WSB-1
Description WD repeat and SOCS box containing 1
Transcript NM_015626   
Other Transcripts NM_134265   
Expression
Putative miRNA Targets on WSB1
3'UTR of WSB1
(miRNA target sites are highlighted)
>WSB1|NM_015626|3'UTR
   1 AAGATTCTGCCTTCCCTAGTAGTAGGGACTGACAGAATACACTTAACACAAACCTCAAGCTTTACTGACTTCAATTATCT
  81 GTTTTTAAAGACGTAGAAGATTTATTTAATTTGATATGTTCTTGTACTGCATTTTGATCAGTTGAGCTTTTAAAATATTA
 161 TTTATAGACAATAGAAGTATTTCTGAACATATCAAATATAAATTTTTTTAAAGATCTAACTGTGAAAACATACATACCTG
 241 TACATATTTAGATATAAGCTGCTATATGTTGAATGGACCCTTTTGCTTTTCTGATTTTTAGTTCTGACATGTATATATTG
 321 CTTCAGTAGAGCCACAATATGTATCTTTGCTGTAAAGTGCAAGGAAATTTTAAATTCTGGGACACTGAGTTAGATGGTAA
 401 ATACTGACTTACGAAAGTTGAATTGGGTGAGGCGGGCAAATCACCTGAGGTCAGCAGTTTGAGACTAGCCTGGCAAACAT
 481 GATGAAACCCTGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGCACACCTGTAGTCCTAGCT
 561 ACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCAAGATCACACCACTGCACTC
 641 CAACCTGGACAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAATTGTGTTGCCTCATACGAAATGTATTTGGTTTTG
 721 TTGGAGAGTGTCAGACTGATCTGGAAGTGAAACACAGTTTATGTACAGGGAAAAGGATTTTATTATCCTTAGGAATGTCA
 801 TCCAAGACGTAGAGCTTGAATGTGACGTTATTTAAAAACAACAACAAAGAAGGCAGAGCCAGGATATAACTAGAAAAAGG
 881 ATGTCTTTTTTTTTTTTTTTACTCCCCCTCTAAACACTGCTGCTGCCTTAATTTTAGAAAGCAGCTTACTAGTTTACCCT
 961 TGTGGTATAAAGTATTATAAATTGTTGTGAATTTGAAGAATCCGTCTACTGTATTATTGCTAAATATTTTGTTTATACTA
1041 AGGGACAATTATTTTAAGACCATGGATTTAAAAAAAAAAAAAAAAACTCTGTTTCTGCAGGGGATGATATTGGTGAGTTG
1121 CCAAAGAAGCAATACAGCATATCTGCTTTTGCCTTCTGTTGTTTATCTTACCTGCAGATATTAAGAATGTATGCATTATG
1201 TAAAATGCTCAATTATATATTTTTGTTGAGTTTTTTAATTAAAGACTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1281 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggGUGGUCGAC--GAG---GGACCGGgu 5'
            ||||| |||  |||   ||||| |  
Target 5' caCACCA-CTGCACTCCAACCTGGACaa 3'
626 - 652 118.00 -21.80
2
miRNA  3' ggGUGGUCGA---C-GA-GGGACCGggu 5'
            || |||:|   | ||  ||||||   
Target 5' gtCAGCAGTTTGAGACTAGCCTGGCaaa 3'
450 - 477 117.00 -18.80
3
miRNA  3' gggugguCGACGAG-GGAC--CGGGu 5'
                 | ||| | ||||  |:|| 
Target 5' gcgtggtGGTGCACACCTGTAGTCCt 3'
531 - 556 100.00 -13.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30187965 6 COSMIC
COSN20079112 9 COSMIC
COSN30496959 14 COSMIC
COSN30712823 41 COSMIC
COSN31542875 79 COSMIC
COSN32053262 80 COSMIC
COSN13707338 93 COSMIC
COSN20078742 94 COSMIC
COSN31525134 122 COSMIC
COSN16724367 156 COSMIC
COSN30154469 167 COSMIC
COSN31549346 206 COSMIC
COSN1194769 214 COSMIC
COSN30159681 214 COSMIC
COSN23730480 462 COSMIC
COSN23140367 523 COSMIC
COSN28676227 687 COSMIC
COSN29764227 687 COSMIC
COSN22806172 688 COSMIC
COSN31546105 764 COSMIC
COSN30543883 769 COSMIC
COSN20113714 901 COSMIC
COSN20113715 901 COSMIC
COSN31523334 983 COSMIC
COSN31519480 999 COSMIC
COSN20113716 1087 COSMIC
COSN26574997 1113 COSMIC
COSN26572693 1152 COSMIC
COSN26635826 1178 COSMIC
COSN25410477 1218 COSMIC
COSN21468794 1458 COSMIC
COSN22707890 1589 COSMIC
COSN25166784 1618 COSMIC
COSN22255243 1666 COSMIC
COSN7162717 1691 COSMIC
COSN32152732 2133 COSMIC
COSN14438739 2203 COSMIC
COSN25995409 2545 COSMIC
COSN8342825 2883 COSMIC
COSN6100948 3207 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753475794 8 dbSNP
rs1228143306 9 dbSNP
rs555569936 10 dbSNP
rs1252317565 15 dbSNP
rs1168290219 17 dbSNP
rs754780784 17 dbSNP
rs1478642610 18 dbSNP
rs781033703 18 dbSNP
rs748114651 21 dbSNP
rs201870860 23 dbSNP
rs764890411 26 dbSNP
rs1388250638 33 dbSNP
rs1448585755 34 dbSNP
rs373703943 36 dbSNP
rs139016589 38 dbSNP
rs747145899 42 dbSNP
rs1161706471 43 dbSNP
rs757267111 44 dbSNP
rs769304638 45 dbSNP
rs777196772 45 dbSNP
rs781394200 50 dbSNP
rs1328446200 53 dbSNP
rs1264857415 56 dbSNP
rs1466970737 57 dbSNP
rs1318986987 65 dbSNP
rs1195313572 67 dbSNP
rs1008603737 75 dbSNP
rs559673655 93 dbSNP
rs533178921 94 dbSNP
rs1175148016 96 dbSNP
rs1390835194 99 dbSNP
rs78397567 103 dbSNP
rs564213739 105 dbSNP
rs1333571786 113 dbSNP
rs781115269 115 dbSNP
rs1467014445 116 dbSNP
rs1400830594 120 dbSNP
rs997096593 122 dbSNP
rs1471810256 125 dbSNP
rs1370109279 130 dbSNP
rs1419165016 132 dbSNP
rs1417930766 141 dbSNP
rs531682168 142 dbSNP
rs188833941 143 dbSNP
rs1393000298 146 dbSNP
rs9867 147 dbSNP
rs968977514 154 dbSNP
rs1000171764 156 dbSNP
rs1272989699 156 dbSNP
rs1031685946 158 dbSNP
rs956071111 167 dbSNP
rs1238462147 172 dbSNP
rs1440210878 174 dbSNP
rs993354928 187 dbSNP
rs1281506188 189 dbSNP
rs1370527030 191 dbSNP
rs764450095 193 dbSNP
rs1403337584 195 dbSNP
rs970317638 200 dbSNP
rs1163727157 203 dbSNP
rs979976553 205 dbSNP
rs557177989 216 dbSNP
rs56916727 216 dbSNP
rs930569361 221 dbSNP
rs1439994401 227 dbSNP
rs1251973857 230 dbSNP
rs1197206602 232 dbSNP
rs1453644910 234 dbSNP
rs1268694254 236 dbSNP
rs983038572 237 dbSNP
rs1352112214 238 dbSNP
rs528962084 239 dbSNP
rs1273534503 248 dbSNP
rs1240953275 253 dbSNP
rs1347451302 254 dbSNP
rs907584734 256 dbSNP
rs1332554127 257 dbSNP
rs113920041 274 dbSNP
rs547196622 275 dbSNP
rs1381618547 277 dbSNP
rs565624661 279 dbSNP
rs539053472 284 dbSNP
rs1234310155 294 dbSNP
rs1470193249 302 dbSNP
rs1358540571 306 dbSNP
rs1159993035 309 dbSNP
rs557782269 310 dbSNP
rs1040557608 312 dbSNP
rs1416301231 318 dbSNP
rs901322539 321 dbSNP
rs1478794485 327 dbSNP
rs932788867 338 dbSNP
rs547034345 346 dbSNP
rs1192918702 353 dbSNP
rs1049940697 360 dbSNP
rs1265908715 364 dbSNP
rs1217448034 365 dbSNP
rs1476450444 378 dbSNP
rs1166292081 386 dbSNP
rs1485360818 392 dbSNP
rs904744200 394 dbSNP
rs1423289394 403 dbSNP
rs1000453720 406 dbSNP
rs1275290825 407 dbSNP
rs114916240 413 dbSNP
rs1355382006 415 dbSNP
rs1299917193 418 dbSNP
rs1400104308 419 dbSNP
rs1434806907 434 dbSNP
rs1447365491 435 dbSNP
rs11550665 439 dbSNP
rs1415883468 443 dbSNP
rs140641463 448 dbSNP
rs1014320938 458 dbSNP
rs1477005729 466 dbSNP
rs1426452841 468 dbSNP
rs201598775 471 dbSNP
rs1234986111 476 dbSNP
rs1293841211 480 dbSNP
rs1338487588 482 dbSNP
rs1212656031 488 dbSNP
rs145810370 493 dbSNP
rs1438095376 497 dbSNP
rs1209749693 500 dbSNP
rs1254689944 501 dbSNP
rs1486375467 506 dbSNP
rs1189254825 507 dbSNP
rs1197784941 509 dbSNP
rs1219214952 509 dbSNP
rs1279833665 509 dbSNP
rs1315779670 509 dbSNP
rs780575361 509 dbSNP
rs565426179 511 dbSNP
rs1281978307 521 dbSNP
rs1340699455 523 dbSNP
rs1474615596 523 dbSNP
rs1170059739 533 dbSNP
rs970178093 533 dbSNP
rs1420702741 534 dbSNP
rs1037851251 538 dbSNP
rs542669188 550 dbSNP
rs1183685609 553 dbSNP
rs1473128972 581 dbSNP
rs1232543244 586 dbSNP
rs751122469 590 dbSNP
rs1377289847 598 dbSNP
rs1459233229 602 dbSNP
rs1415535600 604 dbSNP
rs1199021107 609 dbSNP
rs1027446964 611 dbSNP
rs748907037 616 dbSNP
rs878966575 617 dbSNP
rs919433262 619 dbSNP
rs148106079 623 dbSNP
rs983365667 624 dbSNP
rs1379206203 634 dbSNP
rs907536550 641 dbSNP
rs1444180757 642 dbSNP
rs1378652695 646 dbSNP
rs944395281 650 dbSNP
rs975792256 652 dbSNP
rs1348652248 653 dbSNP
rs545068050 654 dbSNP
rs7218634 659 dbSNP
rs192619120 660 dbSNP
rs1156925544 664 dbSNP
rs1441837233 666 dbSNP
rs931760385 670 dbSNP
rs1277822871 671 dbSNP
rs1346623901 672 dbSNP
rs1488010514 672 dbSNP
rs757458208 672 dbSNP
rs1349416675 677 dbSNP
rs1284775547 679 dbSNP
rs1237312478 680 dbSNP
rs904734112 684 dbSNP
rs1309448617 685 dbSNP
rs1060618 687 dbSNP
rs374285747 687 dbSNP
rs1053388453 688 dbSNP
rs1284159646 689 dbSNP
rs1445731491 691 dbSNP
rs1296432665 697 dbSNP
rs892069384 698 dbSNP
rs1421516739 699 dbSNP
rs1381180394 704 dbSNP
rs1195986752 705 dbSNP
rs1014640515 708 dbSNP
rs1024317498 709 dbSNP
rs183704519 711 dbSNP
rs1262314713 712 dbSNP
rs1001665217 719 dbSNP
rs1488962531 722 dbSNP
rs1286315374 730 dbSNP
rs1232128852 735 dbSNP
rs1027436933 748 dbSNP
rs561837141 749 dbSNP
rs1220117970 752 dbSNP
rs1340453646 756 dbSNP
rs541369304 763 dbSNP
rs1361300595 764 dbSNP
rs1014771797 768 dbSNP
rs188465642 784 dbSNP
rs1464795412 785 dbSNP
rs966002696 786 dbSNP
rs1177986355 789 dbSNP
rs1435383279 792 dbSNP
rs976122946 796 dbSNP
rs565635594 803 dbSNP
rs533076334 804 dbSNP
rs1478744161 809 dbSNP
rs191750845 810 dbSNP
rs1199374242 812 dbSNP
rs184810588 817 dbSNP
rs1257321606 823 dbSNP
rs979211815 827 dbSNP
rs150610699 828 dbSNP
rs1256533278 830 dbSNP
rs1221050939 831 dbSNP
rs936129412 832 dbSNP
rs533210726 837 dbSNP
rs564266140 837 dbSNP
rs1046143074 846 dbSNP
rs905896830 846 dbSNP
rs950332343 846 dbSNP
rs1001559434 852 dbSNP
rs1049159131 863 dbSNP
rs777720952 867 dbSNP
rs1271600991 878 dbSNP
rs1186228892 879 dbSNP
rs1004644680 880 dbSNP
rs1257858709 881 dbSNP
rs139356758 885 dbSNP
rs1183869407 886 dbSNP
rs1200902355 886 dbSNP
rs1319235597 886 dbSNP
rs878882322 886 dbSNP
rs1265306482 896 dbSNP
rs1345443693 898 dbSNP
rs1014719446 901 dbSNP
rs1234594089 901 dbSNP
rs1259584786 902 dbSNP
rs1347933496 903 dbSNP
rs1207354124 905 dbSNP
rs1374936066 906 dbSNP
rs1285649648 907 dbSNP
rs372481485 908 dbSNP
rs966318260 911 dbSNP
rs534892978 913 dbSNP
rs997484766 914 dbSNP
rs1029070124 917 dbSNP
rs1456305383 918 dbSNP
rs1181399561 924 dbSNP
rs1219570157 926 dbSNP
rs553576225 931 dbSNP
rs1362075156 948 dbSNP
rs1235919780 955 dbSNP
rs1180907379 966 dbSNP
rs1471232339 966 dbSNP
rs140924028 969 dbSNP
rs1208630963 970 dbSNP
rs578016055 975 dbSNP
rs979108957 982 dbSNP
rs924993519 984 dbSNP
rs1385629359 987 dbSNP
rs1351786652 988 dbSNP
rs956448736 998 dbSNP
rs753701114 1004 dbSNP
rs543499120 1005 dbSNP
rs539155612 1006 dbSNP
rs1322609495 1007 dbSNP
rs1385072473 1012 dbSNP
rs1441106822 1022 dbSNP
rs1305874713 1024 dbSNP
rs1392783498 1032 dbSNP
rs988938948 1041 dbSNP
rs1418492784 1045 dbSNP
rs190061572 1047 dbSNP
rs138745604 1049 dbSNP
rs1377462557 1056 dbSNP
rs1334819714 1062 dbSNP
rs1232025647 1063 dbSNP
rs950339494 1064 dbSNP
rs1275395313 1069 dbSNP
rs1046008997 1070 dbSNP
rs1288223473 1070 dbSNP
rs1453847841 1070 dbSNP
rs750489113 1070 dbSNP
rs927268896 1071 dbSNP
rs1274092962 1080 dbSNP
rs1230722162 1081 dbSNP
rs1347329560 1082 dbSNP
rs937320431 1083 dbSNP
rs1248764489 1085 dbSNP
rs1358131616 1086 dbSNP
rs1299463767 1087 dbSNP
rs1400977199 1087 dbSNP
rs1400998950 1087 dbSNP
rs1171189578 1088 dbSNP
rs1430637573 1090 dbSNP
rs1193632810 1092 dbSNP
rs56688826 1095 dbSNP
rs1265510473 1096 dbSNP
rs887829414 1099 dbSNP
rs1417273228 1101 dbSNP
rs1266085689 1104 dbSNP
rs1276688664 1107 dbSNP
rs1004927780 1114 dbSNP
rs1474814951 1121 dbSNP
rs1325362143 1124 dbSNP
rs1036604146 1130 dbSNP
rs1217981753 1132 dbSNP
rs1338331726 1133 dbSNP
rs1430736612 1138 dbSNP
rs1339538971 1140 dbSNP
rs1331735588 1142 dbSNP
rs901711746 1144 dbSNP
rs757282808 1151 dbSNP
rs1419691245 1157 dbSNP
rs143728649 1159 dbSNP
rs1464570859 1162 dbSNP
rs1489539513 1164 dbSNP
rs1028884958 1168 dbSNP
rs1187193197 1175 dbSNP
rs1472488455 1176 dbSNP
rs1235971002 1179 dbSNP
rs1189937960 1191 dbSNP
rs1461919449 1201 dbSNP
rs1243601230 1203 dbSNP
rs1393934225 1204 dbSNP
rs1197766726 1205 dbSNP
rs889043632 1206 dbSNP
rs1274978288 1207 dbSNP
rs187250475 1217 dbSNP
rs1355097179 1218 dbSNP
rs1281890347 1220 dbSNP
rs1328892039 1220 dbSNP
rs1454305221 1223 dbSNP
rs1383051223 1226 dbSNP
rs1000497727 1235 dbSNP
rs1331111839 1235 dbSNP
rs1354306090 1236 dbSNP
rs1231926629 1245 dbSNP
rs1295715228 1246 dbSNP
rs1356826265 1246 dbSNP
rs1032012137 1251 dbSNP
rs113216584 1251 dbSNP
rs1171679521 1251 dbSNP
rs564015544 1251 dbSNP
rs59031980 1251 dbSNP
rs879199057 1251 dbSNP
rs540847753 1252 dbSNP
rs147206852 1260 dbSNP
rs1020858124 1261 dbSNP
rs1052471980 1263 dbSNP
rs532854560 1264 dbSNP
rs772172687 1266 dbSNP
rs1308030084 1268 dbSNP
rs1256811744 1282 dbSNP
rs1484742041 1289 dbSNP
rs1376052584 1297 dbSNP
rs1185700109 1300 dbSNP
rs1259617209 1307 dbSNP
rs1436481857 1307 dbSNP
rs140620135 1309 dbSNP
rs1169545874 1313 dbSNP
rs1348635329 1314 dbSNP
rs1305047350 1317 dbSNP
rs189271279 1318 dbSNP
rs1425334260 1319 dbSNP
rs780187618 1332 dbSNP
rs1157134406 1336 dbSNP
rs1441743513 1340 dbSNP
rs1463163983 1364 dbSNP
rs35722010 1392 dbSNP
rs1168843446 1393 dbSNP
rs937603375 1394 dbSNP
rs562900450 1406 dbSNP
rs1244838506 1413 dbSNP
rs116221117 1419 dbSNP
rs868184803 1420 dbSNP
rs1315315967 1422 dbSNP
rs1284664084 1423 dbSNP
rs1356712295 1425 dbSNP
rs1214055003 1426 dbSNP
rs867154115 1433 dbSNP
rs1308233372 1434 dbSNP
rs1218950385 1435 dbSNP
rs1366119301 1438 dbSNP
rs1382177215 1439 dbSNP
rs1360026795 1440 dbSNP
rs1293828348 1444 dbSNP
rs566852908 1452 dbSNP
rs1455589020 1465 dbSNP
rs901656685 1467 dbSNP
rs933138731 1468 dbSNP
rs1413663495 1474 dbSNP
rs1427144320 1493 dbSNP
rs1328564885 1511 dbSNP
rs1480706827 1515 dbSNP
rs1050691520 1523 dbSNP
rs768995853 1542 dbSNP
rs888993629 1556 dbSNP
rs548606574 1564 dbSNP
rs777120706 1567 dbSNP
rs1260882685 1578 dbSNP
rs763913632 1592 dbSNP
rs1279957927 1599 dbSNP
rs1224732851 1620 dbSNP
rs1032002532 1630 dbSNP
rs1276394804 1633 dbSNP
rs762197795 1637 dbSNP
rs1009711887 1653 dbSNP
rs181981877 1654 dbSNP
rs879025765 1655 dbSNP
rs535358876 1660 dbSNP
rs1470296604 1675 dbSNP
rs1422762966 1677 dbSNP
rs1282358291 1705 dbSNP
rs1167711901 1708 dbSNP
rs1429734331 1712 dbSNP
rs534159448 1718 dbSNP
rs1483509981 1723 dbSNP
rs59999068 1727 dbSNP
rs1259322312 1728 dbSNP
rs1245417427 1731 dbSNP
rs563250660 1743 dbSNP
rs1488582313 1749 dbSNP
rs958947132 1750 dbSNP
rs1188800737 1752 dbSNP
rs1229736670 1758 dbSNP
rs773613131 1762 dbSNP
rs571828071 1764 dbSNP
rs1394580538 1779 dbSNP
rs1432301474 1782 dbSNP
rs1385248560 1786 dbSNP
rs1338473661 1788 dbSNP
rs940720689 1789 dbSNP
rs754022713 1792 dbSNP
rs1296430005 1796 dbSNP
rs1463433029 1803 dbSNP
rs1373212579 1808 dbSNP
rs1174917565 1811 dbSNP
rs144561041 1813 dbSNP
rs933401938 1822 dbSNP
rs557495602 1824 dbSNP
rs888985241 1828 dbSNP
rs575669588 1829 dbSNP
rs1453589090 1833 dbSNP
rs936557865 1836 dbSNP
rs1364503075 1841 dbSNP
rs1436369778 1842 dbSNP
rs759075161 1847 dbSNP
rs1053726150 1850 dbSNP
rs1242624968 1852 dbSNP
rs1302918712 1865 dbSNP
rs892406364 1870 dbSNP
rs1009207472 1873 dbSNP
rs185076341 1896 dbSNP
rs1393124911 1899 dbSNP
rs535975161 1900 dbSNP
rs189739729 1901 dbSNP
rs1002402247 1908 dbSNP
rs1367073436 1909 dbSNP
rs1163886093 1922 dbSNP
rs1438664874 1924 dbSNP
rs1316419811 1925 dbSNP
rs115380329 1928 dbSNP
rs866473286 1929 dbSNP
rs183054267 1932 dbSNP
rs1209173914 1933 dbSNP
rs1220394453 1943 dbSNP
rs1490847449 1946 dbSNP
rs1016449599 1953 dbSNP
rs962275321 1960 dbSNP
rs1252169862 1962 dbSNP
rs1348792063 1964 dbSNP
rs1452137299 1972 dbSNP
rs972049758 1996 dbSNP
rs186453776 1997 dbSNP
rs1418058058 1998 dbSNP
rs1403000352 2004 dbSNP
rs1346893477 2005 dbSNP
rs954808937 2016 dbSNP
rs1418776532 2019 dbSNP
rs1382256266 2021 dbSNP
rs1160660660 2022 dbSNP
rs1454596428 2023 dbSNP
rs763790134 2026 dbSNP
rs1377580606 2036 dbSNP
rs986648537 2053 dbSNP
rs1481701966 2055 dbSNP
rs1269763216 2058 dbSNP
rs1157555403 2059 dbSNP
rs577769251 2062 dbSNP
rs1347509392 2064 dbSNP
rs910368964 2071 dbSNP
rs1286554741 2075 dbSNP
rs1206692930 2077 dbSNP
rs1351190340 2079 dbSNP
rs1455877535 2091 dbSNP
rs936465934 2102 dbSNP
rs1221685409 2114 dbSNP
rs1325580180 2124 dbSNP
rs1053632586 2128 dbSNP
rs148424031 2132 dbSNP
rs1325595895 2142 dbSNP
rs1319829283 2143 dbSNP
rs1382417274 2155 dbSNP
rs563032862 2164 dbSNP
rs1046063039 2165 dbSNP
rs1430526290 2166 dbSNP
rs1294355680 2169 dbSNP
rs906228120 2172 dbSNP
rs191686601 2174 dbSNP
rs1054827855 2176 dbSNP
rs888217496 2179 dbSNP
rs1442059803 2185 dbSNP
rs1242363179 2186 dbSNP
rs757276532 2189 dbSNP
rs1325600224 2192 dbSNP
rs1228960820 2194 dbSNP
rs1263642839 2201 dbSNP
rs757027790 2207 dbSNP
rs778872422 2214 dbSNP
rs1271401704 2217 dbSNP
rs1227776553 2223 dbSNP
rs746546249 2228 dbSNP
rs1030318736 2232 dbSNP
rs1246988621 2233 dbSNP
rs1480010043 2234 dbSNP
rs1407500829 2235 dbSNP
rs1175025771 2237 dbSNP
rs1409559774 2250 dbSNP
rs1473183235 2263 dbSNP
rs548724181 2266 dbSNP
rs1416069863 2272 dbSNP
rs986148264 2275 dbSNP
rs1463398521 2276 dbSNP
rs1383551086 2285 dbSNP
rs548550420 2285 dbSNP
rs796397737 2286 dbSNP
rs910610093 2286 dbSNP
rs958117927 2293 dbSNP
rs12938646 2299 dbSNP
rs1324413234 2300 dbSNP
rs1354215807 2303 dbSNP
rs1274512646 2307 dbSNP
rs989273989 2307 dbSNP
rs1195800279 2308 dbSNP
rs913776949 2318 dbSNP
rs1440318165 2320 dbSNP
rs945306226 2321 dbSNP
rs1351185803 2326 dbSNP
rs1279331050 2330 dbSNP
rs758418688 2331 dbSNP
rs1356730618 2341 dbSNP
rs1329629734 2351 dbSNP
rs1424054677 2356 dbSNP
rs1410294490 2360 dbSNP
rs780167149 2361 dbSNP
rs560587180 2365 dbSNP
rs528747545 2366 dbSNP
rs1332403620 2377 dbSNP
rs565699342 2383 dbSNP
rs1176351248 2385 dbSNP
rs1468535649 2398 dbSNP
rs937653635 2407 dbSNP
rs1204628326 2412 dbSNP
rs1490057642 2422 dbSNP
rs1054735660 2429 dbSNP
rs1224338491 2433 dbSNP
rs1359690381 2438 dbSNP
rs1290124998 2441 dbSNP
rs547296082 2442 dbSNP
rs571704494 2443 dbSNP
rs941150714 2449 dbSNP
rs1483106105 2455 dbSNP
rs1343766994 2456 dbSNP
rs1187846756 2457 dbSNP
rs1300404183 2462 dbSNP
rs1037824232 2464 dbSNP
rs1256105044 2476 dbSNP
rs1425547103 2478 dbSNP
rs1476377791 2485 dbSNP
rs1344761043 2486 dbSNP
rs898016032 2490 dbSNP
rs535783539 2491 dbSNP
rs1030977648 2492 dbSNP
rs1419286991 2493 dbSNP
rs1266220004 2494 dbSNP
rs1408356484 2498 dbSNP
rs1490413240 2499 dbSNP
rs890725690 2502 dbSNP
rs1007531963 2503 dbSNP
rs1319161096 2508 dbSNP
rs1017620896 2523 dbSNP
rs1007550735 2529 dbSNP
rs142582561 2530 dbSNP
rs551703938 2534 dbSNP
rs556875955 2539 dbSNP
rs1312163478 2540 dbSNP
rs1361550349 2541 dbSNP
rs781238224 2544 dbSNP
rs1353543178 2545 dbSNP
rs1450159514 2549 dbSNP
rs569352422 2550 dbSNP
rs1361019011 2553 dbSNP
rs1469240855 2560 dbSNP
rs1212379560 2561 dbSNP
rs1178006314 2568 dbSNP
rs1418142876 2571 dbSNP
rs369093943 2577 dbSNP
rs1486642287 2578 dbSNP
rs981988491 2579 dbSNP
rs927844283 2580 dbSNP
rs1460394052 2585 dbSNP
rs554967507 2587 dbSNP
rs76638724 2588 dbSNP
rs1224636106 2598 dbSNP
rs990441045 2603 dbSNP
rs748494900 2606 dbSNP
rs755916224 2607 dbSNP
rs1444593216 2621 dbSNP
rs909584967 2622 dbSNP
rs941100252 2630 dbSNP
rs1188858576 2631 dbSNP
rs1241828999 2636 dbSNP
rs1320986121 2642 dbSNP
rs1323735160 2645 dbSNP
rs1451594022 2646 dbSNP
rs1403846722 2648 dbSNP
rs1036764978 2650 dbSNP
rs1474663055 2651 dbSNP
rs1188497004 2652 dbSNP
rs896920013 2655 dbSNP
rs150929996 2658 dbSNP
rs1434164772 2675 dbSNP
rs1171797395 2684 dbSNP
rs1377387676 2687 dbSNP
rs1390358024 2694 dbSNP
rs1051945564 2695 dbSNP
rs773701541 2696 dbSNP
rs1245317337 2699 dbSNP
rs1201597924 2700 dbSNP
rs140750382 2701 dbSNP
rs553239348 2702 dbSNP
rs1017611168 2704 dbSNP
rs1334762882 2706 dbSNP
rs10603203 2720 dbSNP
rs759516351 2720 dbSNP
rs1010979696 2721 dbSNP
rs1428462425 2722 dbSNP
rs1380364656 2725 dbSNP
rs773879550 2729 dbSNP
rs1021435486 2735 dbSNP
rs1395617622 2736 dbSNP
rs966834874 2744 dbSNP
rs1370609805 2745 dbSNP
rs1365410247 2747 dbSNP
rs1233150964 2749 dbSNP
rs1162577103 2751 dbSNP
rs1300541347 2752 dbSNP
rs149585017 2755 dbSNP
rs1387537561 2759 dbSNP
rs1201512684 2763 dbSNP
rs1419008254 2767 dbSNP
rs1248987568 2776 dbSNP
rs771691789 2778 dbSNP
rs982321529 2781 dbSNP
rs1291094166 2791 dbSNP
rs1220628773 2794 dbSNP
rs1361849826 2797 dbSNP
rs775202896 2798 dbSNP
rs1245166116 2799 dbSNP
rs1445603525 2803 dbSNP
rs959272329 2804 dbSNP
rs116793488 2805 dbSNP
rs544798347 2816 dbSNP
rs760370589 2824 dbSNP
rs1422375634 2825 dbSNP
rs941005650 2835 dbSNP
rs183360874 2838 dbSNP
rs1164228720 2845 dbSNP
rs1453437066 2855 dbSNP
rs745340607 2863 dbSNP
rs1362402883 2866 dbSNP
rs1478430511 2870 dbSNP
rs763853274 2871 dbSNP
rs972438534 2874 dbSNP
rs918297295 2878 dbSNP
rs1407221068 2879 dbSNP
rs933759052 2882 dbSNP
rs1197294770 2883 dbSNP
rs1398903649 2885 dbSNP
rs1322250696 2887 dbSNP
rs879113158 2894 dbSNP
rs1389108002 2900 dbSNP
rs1439631406 2904 dbSNP
rs3751921 2921 dbSNP
rs912098940 2938 dbSNP
rs866678567 2942 dbSNP
rs1329712824 2943 dbSNP
rs1282092890 2951 dbSNP
rs143174011 2954 dbSNP
rs1233387089 2955 dbSNP
rs764959798 2959 dbSNP
rs1039328656 2962 dbSNP
rs560521467 2967 dbSNP
rs894082655 2968 dbSNP
rs553074762 2971 dbSNP
rs528094240 2973 dbSNP
rs1174413113 2975 dbSNP
rs749614240 2986 dbSNP
rs1378240476 2997 dbSNP
rs750351716 2998 dbSNP
rs1192824851 3009 dbSNP
rs1445478020 3016 dbSNP
rs1230809001 3022 dbSNP
rs1042401718 3026 dbSNP
rs1210290542 3031 dbSNP
rs1465313422 3035 dbSNP
rs902590389 3036 dbSNP
rs540531055 3041 dbSNP
rs1346561548 3042 dbSNP
rs1274923910 3047 dbSNP
rs1226312930 3051 dbSNP
rs1324265291 3054 dbSNP
rs761172675 3059 dbSNP
rs188767026 3060 dbSNP
rs1452223320 3063 dbSNP
rs766416513 3066 dbSNP
rs561732452 3068 dbSNP
rs1403069926 3081 dbSNP
rs1012052783 3082 dbSNP
rs1471529968 3083 dbSNP
rs532740076 3089 dbSNP
rs1374960529 3093 dbSNP
rs1161300382 3095 dbSNP
rs1016777002 3096 dbSNP
rs1412418410 3107 dbSNP
rs1201771893 3108 dbSNP
rs1444053859 3109 dbSNP
rs1278733358 3119 dbSNP
rs1194672138 3123 dbSNP
rs1047616 3128 dbSNP
rs1228638750 3130 dbSNP
rs1382585050 3131 dbSNP
rs1313351379 3132 dbSNP
rs1162302406 3133 dbSNP
rs1341520798 3140 dbSNP
rs972770878 3142 dbSNP
rs918298347 3157 dbSNP
rs569488018 3158 dbSNP
rs1398697721 3162 dbSNP
rs955292485 3163 dbSNP
rs1424258456 3179 dbSNP
rs1384444720 3188 dbSNP
rs1181464502 3193 dbSNP
rs1473741157 3195 dbSNP
rs1333484591 3197 dbSNP
rs1180501032 3207 dbSNP
rs986597206 3208 dbSNP
rs530189325 3218 dbSNP
rs1289593627 3223 dbSNP
rs1358208448 3227 dbSNP
rs1290049184 3228 dbSNP
rs1334607321 3228 dbSNP
rs139946690 3229 dbSNP
rs1231888938 3236 dbSNP
rs558088699 3242 dbSNP
rs1267434734 3247 dbSNP
rs1380558373 3250 dbSNP
rs1357268040 3254 dbSNP
rs1195446594 3268 dbSNP
rs1440609020 3273 dbSNP
rs544934290 3282 dbSNP
rs1248436755 3299 dbSNP
rs139129682 3320 dbSNP
rs71687011 3320 dbSNP
rs1162472550 3322 dbSNP
rs1039234519 3323 dbSNP
rs1184246836 3324 dbSNP
rs1252497717 3334 dbSNP
rs543660045 3337 dbSNP
rs1468519626 3352 dbSNP
rs1185077189 3358 dbSNP
rs1253358171 3360 dbSNP
rs1182181418 3364 dbSNP
rs1370013151 3370 dbSNP
rs369913033 3381 dbSNP
rs563367978 3382 dbSNP
rs946994569 3396 dbSNP
rs1166981269 3398 dbSNP
rs1284003256 3402 dbSNP
rs1222621235 3403 dbSNP
rs573634708 3412 dbSNP
rs1431174493 3414 dbSNP
rs1222942552 3418 dbSNP
rs1343899741 3420 dbSNP
rs767042785 3420 dbSNP
rs1437447163 3422 dbSNP
rs566710348 3433 dbSNP
rs1317299466 3438 dbSNP
rs1455579102 3444 dbSNP
rs1414040428 3447 dbSNP
rs1159285028 3462 dbSNP
rs748321996 3470 dbSNP
rs1479852188 3471 dbSNP
rs1426549636 3472 dbSNP
rs1192635335 3474 dbSNP
rs369886669 3475 dbSNP
rs1315196246 3476 dbSNP
rs1214010786 3481 dbSNP
rs1341456595 3482 dbSNP
rs1226949757 3486 dbSNP
rs1249900446 3489 dbSNP
rs1344366040 3494 dbSNP
rs1056527875 3495 dbSNP
rs558725525 3497 dbSNP
rs1220044082 3502 dbSNP
rs1012000487 3503 dbSNP
rs756443071 3505 dbSNP
rs1432570192 3507 dbSNP
rs1390534576 3509 dbSNP
rs1321184160 3511 dbSNP
rs191023431 3536 dbSNP
rs559081700 3537 dbSNP
rs1356989804 3554 dbSNP
rs962599609 3557 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 26118.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggguggucgacgagggACCGGGu 5'
                          |||||| 
Target 5' ---------ggcgcagUGGCCCa 3'
1 - 14
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000262394.2 | 3UTR | GGCGCAGUGGCCCACACCUAUAAUCCCAGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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