pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol UBE2G2   
Synonyms UBC7
Description ubiquitin conjugating enzyme E2 G2
Transcript NM_003343   
Other Transcripts NM_182688   
Expression
Putative miRNA Targets on UBE2G2
3'UTR of UBE2G2
(miRNA target sites are highlighted)
>UBE2G2|NM_003343|3'UTR
   1 GACCTGGCCTCGCACAGGCGCGCACACACCGCCAAGCAGCTCAGCATTCTCCCCCGGCACACTTAGTGACAGTGATGCTC
  81 TGTGCTGGTACCAAACAAGGCAGACTTGCAAGAACCATGGCATCTTTTTTTTTTTTCAAACCTTTCCTACTTCAAACAGG
 161 CTTCTCTTCTGAAATGATGACTTAATGTCGAATATTGACAGCTTACTGCAGTTTTACAGTATTCCTCACAAAGGGCTTCA
 241 GGTAGATTATCAGAGCTGTCAGCACTACCTCTCCCCGCTGAAACCAGCAGTTCATGGCTTCCTGTGGATTCCCTCCCTCC
 321 CTGGAGTGTTGAGGGGGTTGTACCTGCCAGACTTCCAGGGGACGATGGAATACCCAGAACGCTCCTTCTGAAGAAATGGG
 401 GCCCTGTAGCTGCAGCACAGGGGAAGGGCCCGGCACCCTTTCTGGGTCCTTCCTGGTTCCCTGTGGGCCCCATGAGGAGT
 481 CCATTACTTCCTTTCTTCCTTCATATTTTACAGGCAGATGCTTTTCTTATAATCTAATTACATCTTTTCATTTGTTATAT
 561 ATTACAAACCATCACACTTAGAAATACTTCCAGGAAATGCTTTTTTGAAGTGTGAATTAATAAGAAATGGGGTAAATAGA
 641 AAAGAAATTTATTGCTGATTGGCCAGGTGCGGTGGTTCGTGCCTGTAATCCCAGCTCTTTGGGAGGCCAAGGCAGGTAGA
 721 TCACAAGGTCAGGAAATTGAGACCATCCTGGCTAATACAGTGAAACCCCATGTCTGCTAAAATTACAAAAAATTAGCTGG
 801 GCGTGGTGGTGCACGCCTGTAGTCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTA
 881 GCAGTGAGCTGAAGTCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCAGTCTCAAAAAGAAAAAAGAAATTT
 961 ATTGCTGATCACAAGGACAGACAGTTTTTTCCCGACCATACTCATCAAAGATTTACGTTTGTATATTAGTAACTAGTGCA
1041 TTACTAGAGCAGGTGCAGGTGAGGTCTTTAAAGTTTCAATGAAAGTTTCTTCTGGATCTACAGAAAAAATTTTTTTTTTT
1121 CAATCTAAAAACTGGAAATTCTAGGGTTTTTGTACATTTTGGATGCACTGGGAATTTATTAGCACAAAATCATTCTTTGC
1201 AACTCAAAATTCAGAAGGGACTCTACCATATCTTAGCTCAGAGCACAGAGGAGTGCCTTATCCCCACACTTGACTGGGCT
1281 GTGGAGGTGGGCATGTGGGCCCCTGGGCCCAGGCTGGGGACAGAGCCCTTGTTTTGTGACTTAGGATTTTGATGTGGTTC
1361 CCATGTTCTCTAACAGGGCCAGCTGAGCAGCACAGGCCAGGAGGCCACAGTGTAAGCAATAACAGATCTGCCACATGCAG
1441 AAGCAAATATCAGGCCTGTCGCACACGGGCGGCATTTAAATAGGAATTTCTATTTTTGAAATAAGGGATGGTCTATGAGG
1521 CATACAGTAGATTTGATGTGATCCTTTTCTCCCTCCCTTCCATAATGGATCGTGGTCTGTGTGACTGAACCCACACAGAG
1601 TGTCATGGGTGACAGTTTCTGGTTGAAGTAGCTCCACGCCTGGCTTCTGTGGACAGCAGATTCTTTTCCTTCTCACAAGG
1681 GGCTCATTTAAAATTTGGAGGCTGGGTGCTGTGGCTCACGCCTGCAATCCCAGCACTTTGGGAGACTGAGGCGGGCGGAT
1761 CATGAGGTCAGGAGATCGCGACCATCCTGGCTAACAGTGAAACCCTGTCTCCACTAAAAATACAAAAAATTAGCCGGGCG
1841 TGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGAAGACTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCA
1921 GTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAATG
2001 GAACGCAGGGCAAGAACTCGTATTTGGAAGGAGATGGGGGAAAGGAGCGGTATTATACCTATGTTGTATTTGCAGGCAAA
2081 TGAGATGGAGCCCTCTCTGTAAAGAAGAGTCATTTGTGCAAGTAGACGGGGTCTGTGGGTGCAGGCCCTGGAGGGGCACA
2161 CAATTGCCTGGAGGCTTCTGTGAGATCGGGAGAGGGAGGAGAGGCAGTCTCTTGACAAAATAAAGTATTTTTATTCATTT
2241 GTATTTATTAAATGAAAAAACAATCCCATGGTGTCCCTGTTGTGTGGTGGAACCTAATGACTGTTGAAATAAAGTTCTGT
2321 GTTTTCCCTGCCCTGCAGTGTGTGTCCCTTTGTCGTATTGTCAGAGGAGCCTGTGGCCACTGCCCCCAGGGAGCACACCA
2401 GATCATCCCAGCTGGGATTCCTCACGGTGGGGGCTTTTCTGCAGACTTGGGTTAGCTCTGGCATGTTTTCTTCTGTTTCT
2481 GATCTCCCTTCTGTCATTCTGTGGTCTTCCTCTGGAATTCTCAGGTTAGTTGGGGTCTGTGAGACGGATGTGTTCACTAA
2561 CCTATAAATGACATTTTGCAGCTTTTTCAGCAGATGCCATTGTGTGAGTGGCACATTTGACCACTAGAAGCCAGCAGGCT
2641 GTTCCGACTGCGCTTCCCTCCTGCAGTTGCTTAGAAGCACAGCTCCCTGTCATCACTCCTCTGTGGTCCTCTGTGGTCAC
2721 GGTTGGTTGCGATGAGACCTGCCTCTGCGTCTTGTTACTTAGCATGTCAATAAAGAGGCAGATTCCTGTGTCAGTGAAAA
2801 AAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucUUAGG-AACGGACCCACg 5'
             |||::   | ||||||| 
Target 5' taaAATTTGGAGGCTGGGTGc 3'
1689 - 1709 145.00 -16.60
2
miRNA  3' guCUUAGGAACGGACCCAcg 5'
            | | |||| :||||||  
Target 5' cgGCACCCTT-TCTGGGTcc 3'
431 - 449 137.00 -16.40
3
miRNA  3' guCUUAGGAACGGACCCACg 5'
            |:||| | |:||| ||| 
Target 5' atGGATCGTGGTCTGTGTGa 3'
1565 - 1584 134.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30525729 9 COSMIC
COSN27000880 10 COSMIC
COSN30134525 20 COSMIC
COSN32052927 22 COSMIC
COSN30507916 30 COSMIC
COSN31552827 31 COSMIC
COSN18743621 36 COSMIC
COSN30152515 42 COSMIC
COSN23015624 49 COSMIC
COSN13887628 55 COSMIC
COSN15665496 112 COSMIC
COSN1257543 125 COSMIC
COSN26227679 381 COSMIC
COSN15341278 450 COSMIC
COSN26253883 517 COSMIC
COSN8012012 899 COSMIC
COSN19205864 1302 COSMIC
COSN26521423 2011 COSMIC
COSN19583582 2249 COSMIC
COSN17981604 2464 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782104905 11 dbSNP
rs78227833 12 dbSNP
rs782679522 15 dbSNP
rs201798258 19 dbSNP
rs782290771 20 dbSNP
rs782567039 21 dbSNP
rs11569 22 dbSNP
rs782212046 24 dbSNP
rs782499759 24 dbSNP
rs1378911137 25 dbSNP
rs782258154 29 dbSNP
rs782608173 30 dbSNP
rs200013861 31 dbSNP
rs781889738 33 dbSNP
rs782690617 35 dbSNP
rs4818975 36 dbSNP
rs1355143845 37 dbSNP
rs781815410 38 dbSNP
rs782736269 40 dbSNP
rs1330566920 46 dbSNP
rs782494194 49 dbSNP
rs781860775 51 dbSNP
rs529275231 55 dbSNP
rs1275163550 56 dbSNP
rs1343884401 56 dbSNP
rs1217077776 58 dbSNP
rs1020072658 61 dbSNP
rs1457807171 62 dbSNP
rs1198640005 67 dbSNP
rs1236881782 87 dbSNP
rs370053504 89 dbSNP
rs1200039712 102 dbSNP
rs1377373987 105 dbSNP
rs1477178118 108 dbSNP
rs537501767 109 dbSNP
rs1424483611 112 dbSNP
rs1060564 118 dbSNP
rs1398045191 119 dbSNP
rs1442952674 124 dbSNP
rs78449722 136 dbSNP
rs1433915425 137 dbSNP
rs552259450 137 dbSNP
rs879985574 137 dbSNP
rs189879000 141 dbSNP
rs1318085302 142 dbSNP
rs1217491106 145 dbSNP
rs1255535253 149 dbSNP
rs1337609093 153 dbSNP
rs957275130 157 dbSNP
rs1210913559 160 dbSNP
rs1018217209 161 dbSNP
rs527470998 165 dbSNP
rs1195673117 166 dbSNP
rs1264162853 167 dbSNP
rs374580923 167 dbSNP
rs1477579391 174 dbSNP
rs173097 175 dbSNP
rs1420065782 178 dbSNP
rs1459416369 184 dbSNP
rs1163750432 186 dbSNP
rs1389824753 187 dbSNP
rs781847484 189 dbSNP
rs890803567 190 dbSNP
rs1029786372 199 dbSNP
rs1398949670 205 dbSNP
rs1275790121 211 dbSNP
rs868942885 224 dbSNP
rs1356776244 235 dbSNP
rs1246227379 240 dbSNP
rs8131092 248 dbSNP
rs1354767982 257 dbSNP
rs1207264476 260 dbSNP
rs1287131550 264 dbSNP
rs896939215 276 dbSNP
rs1488104702 277 dbSNP
rs1214689718 278 dbSNP
rs185127106 287 dbSNP
rs180843581 288 dbSNP
rs895376194 294 dbSNP
rs1367827687 312 dbSNP
rs1471738966 314 dbSNP
rs1055393688 320 dbSNP
rs782028859 328 dbSNP
rs1360882143 336 dbSNP
rs1418751576 340 dbSNP
rs927990434 347 dbSNP
rs1295935916 351 dbSNP
rs1403792026 352 dbSNP
rs782711910 353 dbSNP
rs1396101626 359 dbSNP
rs1311304403 361 dbSNP
rs77674356 363 dbSNP
rs531759981 364 dbSNP
rs1310499782 372 dbSNP
rs564232058 380 dbSNP
rs144254488 381 dbSNP
rs1483664812 382 dbSNP
rs957220850 383 dbSNP
rs1199959809 390 dbSNP
rs1018581091 414 dbSNP
rs985395553 417 dbSNP
rs1180395542 420 dbSNP
rs1380731623 424 dbSNP
rs955511377 428 dbSNP
rs1029320127 431 dbSNP
rs993860387 432 dbSNP
rs572286049 444 dbSNP
rs961096638 445 dbSNP
rs1466179318 447 dbSNP
rs2838678 450 dbSNP
rs1399395320 452 dbSNP
rs1449716402 467 dbSNP
rs28680339 476 dbSNP
rs190787983 480 dbSNP
rs1005694089 481 dbSNP
rs1238440372 483 dbSNP
rs895323595 484 dbSNP
rs1313023730 492 dbSNP
rs1232752837 509 dbSNP
rs1055746528 511 dbSNP
rs1254373628 529 dbSNP
rs1341531661 535 dbSNP
rs1200511078 539 dbSNP
rs1238707194 549 dbSNP
rs1457211031 558 dbSNP
rs1003796173 561 dbSNP
rs1176559352 565 dbSNP
rs1269139650 567 dbSNP
rs374960638 573 dbSNP
rs34361555 595 dbSNP
rs185482144 607 dbSNP
rs1375486620 619 dbSNP
rs1466730327 621 dbSNP
rs906813827 629 dbSNP
rs1042358759 630 dbSNP
rs371755667 644 dbSNP
rs537842316 647 dbSNP
rs568946316 648 dbSNP
rs570599482 650 dbSNP
rs759011514 669 dbSNP
rs935794996 670 dbSNP
rs1386467233 673 dbSNP
rs1299446062 678 dbSNP
rs1320174131 679 dbSNP
rs1219329929 681 dbSNP
rs911053677 683 dbSNP
rs59567152 692 dbSNP
rs534005041 703 dbSNP
rs565987547 715 dbSNP
rs150793462 720 dbSNP
rs550796646 721 dbSNP
rs1488678423 727 dbSNP
rs1190339531 728 dbSNP
rs529900879 731 dbSNP
rs1478566518 734 dbSNP
rs1193786951 745 dbSNP
rs972368139 752 dbSNP
rs1464554110 763 dbSNP
rs1167495655 766 dbSNP
rs1350888308 770 dbSNP
rs782020029 771 dbSNP
rs569129974 799 dbSNP
rs1016658726 800 dbSNP
rs1292078490 802 dbSNP
rs368818569 803 dbSNP
rs959424356 804 dbSNP
rs1033845562 808 dbSNP
rs1400785795 813 dbSNP
rs532399578 814 dbSNP
rs1338492896 828 dbSNP
rs142811961 834 dbSNP
rs1042639762 857 dbSNP
rs1314769124 866 dbSNP
rs1322186020 867 dbSNP
rs1220578512 869 dbSNP
rs11545488 875 dbSNP
rs1489087572 880 dbSNP
rs1071792 882 dbSNP
rs1261896802 890 dbSNP
rs893818638 894 dbSNP
rs1476545190 898 dbSNP
rs1184178719 899 dbSNP
rs1423681006 904 dbSNP
rs1163146616 905 dbSNP
rs545866910 910 dbSNP
rs1362801200 916 dbSNP
rs1053751874 928 dbSNP
rs782591392 929 dbSNP
rs1358776411 943 dbSNP
rs910653833 947 dbSNP
rs1049560062 951 dbSNP
rs376127176 957 dbSNP
rs922484077 959 dbSNP
rs1227638695 960 dbSNP
rs1312705088 966 dbSNP
rs1355553030 968 dbSNP
rs1240491304 974 dbSNP
rs1284859000 984 dbSNP
rs972651994 993 dbSNP
rs552704558 994 dbSNP
rs1211632953 995 dbSNP
rs909546657 998 dbSNP
rs1483226614 1006 dbSNP
rs1180591436 1016 dbSNP
rs560274828 1017 dbSNP
rs959139568 1020 dbSNP
rs1033872276 1021 dbSNP
rs982281402 1023 dbSNP
rs971318836 1025 dbSNP
rs782231687 1027 dbSNP
rs1358622554 1033 dbSNP
rs762723092 1036 dbSNP
rs1447270972 1049 dbSNP
rs1334587139 1058 dbSNP
rs1378918463 1065 dbSNP
rs1447246754 1069 dbSNP
rs1220555128 1070 dbSNP
rs1308182605 1070 dbSNP
rs1278758996 1077 dbSNP
rs182083012 1078 dbSNP
rs1021130631 1082 dbSNP
rs1009770050 1091 dbSNP
rs1458561330 1092 dbSNP
rs894094427 1106 dbSNP
rs1231497066 1108 dbSNP
rs1032288759 1109 dbSNP
rs1172822949 1110 dbSNP
rs235356 1110 dbSNP
rs11908708 1111 dbSNP
rs797033135 1112 dbSNP
rs1330462920 1121 dbSNP
rs1447359220 1121 dbSNP
rs184028208 1122 dbSNP
rs933806197 1126 dbSNP
rs1438231921 1127 dbSNP
rs901009387 1131 dbSNP
rs1275070226 1142 dbSNP
rs1366386474 1156 dbSNP
rs1221169415 1163 dbSNP
rs1259378378 1166 dbSNP
rs1036906614 1191 dbSNP
rs939910767 1197 dbSNP
rs1319255471 1199 dbSNP
rs909831050 1202 dbSNP
rs1198540551 1212 dbSNP
rs1271391761 1219 dbSNP
rs1453675924 1222 dbSNP
rs1199929269 1225 dbSNP
rs1246347043 1226 dbSNP
rs576885199 1231 dbSNP
rs983786956 1240 dbSNP
rs1195960261 1252 dbSNP
rs1424371828 1253 dbSNP
rs1466112289 1254 dbSNP
rs1169844248 1261 dbSNP
rs1394141236 1274 dbSNP
rs937694673 1278 dbSNP
rs1406883500 1281 dbSNP
rs1323902653 1283 dbSNP
rs781882071 1286 dbSNP
rs1402677692 1287 dbSNP
rs1279590955 1298 dbSNP
rs1340576135 1302 dbSNP
rs543821917 1303 dbSNP
rs926365207 1311 dbSNP
rs982279164 1313 dbSNP
rs879992359 1314 dbSNP
rs1218629228 1317 dbSNP
rs1268926152 1323 dbSNP
rs782799132 1325 dbSNP
rs112421128 1326 dbSNP
rs1358993850 1349 dbSNP
rs1210819165 1354 dbSNP
rs1289548616 1357 dbSNP
rs1489929447 1358 dbSNP
rs1219033051 1365 dbSNP
rs1264056044 1367 dbSNP
rs772929650 1368 dbSNP
rs1191031836 1372 dbSNP
rs970883633 1374 dbSNP
rs1163659512 1377 dbSNP
rs1473709992 1377 dbSNP
rs1384349540 1380 dbSNP
rs1422418808 1388 dbSNP
rs1021068624 1398 dbSNP
rs558705985 1404 dbSNP
rs1398848979 1405 dbSNP
rs1315532270 1411 dbSNP
rs1342809760 1413 dbSNP
rs1246120432 1416 dbSNP
rs1284017538 1423 dbSNP
rs1357715936 1431 dbSNP
rs1242660478 1435 dbSNP
rs1287005182 1436 dbSNP
rs1488052685 1439 dbSNP
rs533837574 1450 dbSNP
rs235355 1454 dbSNP
rs958262970 1460 dbSNP
rs554514753 1461 dbSNP
rs1384439539 1466 dbSNP
rs542740553 1467 dbSNP
rs889122687 1470 dbSNP
rs1030376230 1471 dbSNP
rs536437123 1474 dbSNP
rs897946879 1484 dbSNP
rs1403684652 1489 dbSNP
rs879984056 1494 dbSNP
rs1397175772 1505 dbSNP
rs1336636582 1515 dbSNP
rs539384208 1521 dbSNP
rs1449482540 1524 dbSNP
rs2838677 1525 dbSNP
rs1353299307 1526 dbSNP
rs537872937 1527 dbSNP
rs1237112139 1530 dbSNP
rs570480332 1539 dbSNP
rs1257882827 1550 dbSNP
rs1345788467 1551 dbSNP
rs1201028584 1555 dbSNP
rs888343157 1556 dbSNP
rs1459883568 1562 dbSNP
rs782118668 1565 dbSNP
rs377282841 1571 dbSNP
rs1418192462 1572 dbSNP
rs868936403 1578 dbSNP
rs782802689 1580 dbSNP
rs782171999 1598 dbSNP
rs1466101405 1601 dbSNP
rs1175003757 1603 dbSNP
rs781923132 1613 dbSNP
rs527734930 1615 dbSNP
rs560207327 1618 dbSNP
rs949124185 1630 dbSNP
rs1373022194 1637 dbSNP
rs760432 1640 dbSNP
rs34048289 1641 dbSNP
rs760431 1641 dbSNP
rs71321529 1642 dbSNP
rs200585311 1644 dbSNP
rs35242981 1644 dbSNP
rs545587695 1650 dbSNP
rs1331824951 1653 dbSNP
rs558366675 1660 dbSNP
rs1261287554 1662 dbSNP
rs1321367815 1672 dbSNP
rs1200425320 1678 dbSNP
rs1258523630 1680 dbSNP
rs1480180207 1681 dbSNP
rs114662306 1686 dbSNP
rs1433359363 1688 dbSNP
rs1198101932 1695 dbSNP
rs925523338 1700 dbSNP
rs868938221 1701 dbSNP
rs1171991359 1706 dbSNP
rs1354385307 1711 dbSNP
rs1460788536 1714 dbSNP
rs1295590019 1717 dbSNP
rs1391757516 1719 dbSNP
rs1404530380 1720 dbSNP
rs1281504102 1727 dbSNP
rs1342430021 1728 dbSNP
rs1220460225 1733 dbSNP
rs1296205032 1738 dbSNP
rs953693492 1745 dbSNP
rs1202201251 1746 dbSNP
rs1266948016 1752 dbSNP
rs544860406 1753 dbSNP
rs1221248326 1754 dbSNP
rs1266220104 1756 dbSNP
rs1488980426 1763 dbSNP
rs1193667157 1765 dbSNP
rs184655370 1770 dbSNP
rs1419434977 1777 dbSNP
rs570330630 1778 dbSNP
rs192257691 1779 dbSNP
rs1369383312 1780 dbSNP
rs962104643 1784 dbSNP
rs1301512348 1797 dbSNP
rs1362611220 1806 dbSNP
rs1400696767 1812 dbSNP
rs1288303014 1813 dbSNP
rs1361223950 1817 dbSNP
rs1212704459 1819 dbSNP
rs573015073 1822 dbSNP
rs1015035100 1823 dbSNP
rs553272508 1829 dbSNP
rs536086087 1836 dbSNP
rs1240977428 1839 dbSNP
rs575370920 1840 dbSNP
rs1002529994 1847 dbSNP
rs1444395773 1848 dbSNP
rs1161987590 1850 dbSNP
rs1382415781 1851 dbSNP
rs1420487645 1852 dbSNP
rs60739888 1858 dbSNP
rs1343485873 1860 dbSNP
rs1304507762 1864 dbSNP
rs1428616918 1864 dbSNP
rs1137677 1871 dbSNP
rs1383347659 1872 dbSNP
rs1451660212 1872 dbSNP
rs535012609 1876 dbSNP
rs538508051 1891 dbSNP
rs949072462 1893 dbSNP
rs570518443 1895 dbSNP
rs1052142444 1896 dbSNP
rs936802074 1909 dbSNP
rs925440946 1910 dbSNP
rs986350018 1911 dbSNP
rs1182156690 1933 dbSNP
rs235354 1934 dbSNP
rs374182394 1935 dbSNP
rs554713844 1935 dbSNP
rs566885000 1935 dbSNP
rs1416243161 1936 dbSNP
rs1176808030 1938 dbSNP
rs976059215 1941 dbSNP
rs1469189213 1946 dbSNP
rs1334495992 1949 dbSNP
rs1378812981 1952 dbSNP
rs1442564750 1956 dbSNP
rs554587309 1958 dbSNP
rs1370639970 1962 dbSNP
rs1220467527 1971 dbSNP
rs1263164035 1972 dbSNP
rs1323491045 1974 dbSNP
rs1202306202 1978 dbSNP
rs1260457833 1979 dbSNP
rs1014984237 1998 dbSNP
rs1204181561 1999 dbSNP
rs1231407296 1999 dbSNP
rs1428651356 1999 dbSNP
rs1438746652 1999 dbSNP
rs35406176 1999 dbSNP
rs782703781 1999 dbSNP
rs879999650 1999 dbSNP
rs1352424440 2001 dbSNP
rs1438118931 2004 dbSNP
rs1344304125 2005 dbSNP
rs2838676 2006 dbSNP
rs1006314466 2007 dbSNP
rs952149084 2010 dbSNP
rs143482576 2020 dbSNP
rs1002064471 2023 dbSNP
rs1453576955 2024 dbSNP
rs1223478890 2026 dbSNP
rs1268349336 2034 dbSNP
rs905084137 2039 dbSNP
rs1195857845 2040 dbSNP
rs1374739559 2041 dbSNP
rs1475674002 2044 dbSNP
rs1167140816 2048 dbSNP
rs1417090102 2049 dbSNP
rs551305903 2050 dbSNP
rs8103 2062 dbSNP
rs1364493960 2063 dbSNP
rs1402571473 2081 dbSNP
rs1299441796 2087 dbSNP
rs1013171135 2093 dbSNP
rs1327559175 2099 dbSNP
rs1227298287 2103 dbSNP
rs892134005 2109 dbSNP
rs1052088480 2118 dbSNP
rs1268841031 2119 dbSNP
rs183744512 2127 dbSNP
rs540266347 2128 dbSNP
rs868946696 2129 dbSNP
rs1051014419 2130 dbSNP
rs1357481328 2134 dbSNP
rs1218920347 2135 dbSNP
rs932188495 2143 dbSNP
rs1262469976 2146 dbSNP
rs1447554840 2147 dbSNP
rs1192366182 2156 dbSNP
rs923490167 2160 dbSNP
rs1446229492 2164 dbSNP
rs976341157 2165 dbSNP
rs940634844 2169 dbSNP
rs58011992 2174 dbSNP
rs1385019876 2182 dbSNP
rs984825149 2187 dbSNP
rs952207951 2188 dbSNP
rs79419717 2198 dbSNP
rs1314740656 2201 dbSNP
rs1380896637 2204 dbSNP
rs1242545507 2211 dbSNP
rs542674862 2216 dbSNP
rs1350038771 2218 dbSNP
rs969255246 2222 dbSNP
rs755932019 2225 dbSNP
rs143471367 2231 dbSNP
rs1282080947 2256 dbSNP
rs1462557631 2260 dbSNP
rs1184002133 2261 dbSNP
rs1242266055 2266 dbSNP
rs1442445897 2271 dbSNP
rs1183515211 2284 dbSNP
rs1363946271 2285 dbSNP
rs190700877 2286 dbSNP
rs1156247210 2299 dbSNP
rs1013453177 2301 dbSNP
rs1470566888 2312 dbSNP
rs1336532662 2326 dbSNP
rs538445485 2329 dbSNP
rs1393423349 2344 dbSNP
rs752508556 2346 dbSNP
rs1307980273 2347 dbSNP
rs1335337523 2355 dbSNP
rs148818537 2355 dbSNP
rs1276646523 2363 dbSNP
rs1000511358 2366 dbSNP
rs1204194508 2368 dbSNP
rs1262334596 2379 dbSNP
rs552830315 2385 dbSNP
rs187379903 2393 dbSNP
rs373771475 2397 dbSNP
rs1050198966 2398 dbSNP
rs932109508 2407 dbSNP
rs1179089160 2414 dbSNP
rs1430752176 2415 dbSNP
rs75251524 2416 dbSNP
rs1040607192 2425 dbSNP
rs940917197 2426 dbSNP
rs235353 2428 dbSNP
rs1389855096 2429 dbSNP
rs984763376 2430 dbSNP
rs1305080964 2433 dbSNP
rs1346213878 2434 dbSNP
rs930673247 2454 dbSNP
rs1224115311 2455 dbSNP
rs235352 2464 dbSNP
rs551236776 2465 dbSNP
rs1229373698 2479 dbSNP
rs1251635477 2481 dbSNP
rs1480129480 2482 dbSNP
rs182685677 2487 dbSNP
rs1270486242 2494 dbSNP
rs1024756300 2507 dbSNP
rs1197992434 2512 dbSNP
rs369344690 2514 dbSNP
rs1430771283 2516 dbSNP
rs1171605614 2517 dbSNP
rs1372840160 2520 dbSNP
rs549407161 2523 dbSNP
rs765988512 2532 dbSNP
rs1366358973 2535 dbSNP
rs782543116 2541 dbSNP
rs1301323187 2542 dbSNP
rs547287529 2544 dbSNP
rs78138436 2545 dbSNP
rs530864143 2546 dbSNP
rs190429128 2552 dbSNP
rs1225810314 2559 dbSNP
rs1293507381 2560 dbSNP
rs1000911333 2568 dbSNP
rs145426173 2572 dbSNP
rs530680046 2580 dbSNP
rs563225951 2589 dbSNP
rs903528292 2600 dbSNP
rs1266111515 2606 dbSNP
rs1487163435 2608 dbSNP
rs782706406 2614 dbSNP
rs1261550951 2615 dbSNP
rs376094852 2617 dbSNP
rs901629541 2622 dbSNP
rs79329430 2624 dbSNP
rs1040553954 2626 dbSNP
rs577393585 2631 dbSNP
rs552869591 2636 dbSNP
rs1347017589 2641 dbSNP
rs185664467 2643 dbSNP
rs782073147 2644 dbSNP
rs762490972 2645 dbSNP
rs1316842331 2646 dbSNP
rs1432658695 2646 dbSNP
rs1383123465 2651 dbSNP
rs140665416 2652 dbSNP
rs1287196406 2654 dbSNP
rs1318189878 2660 dbSNP
rs1049346919 2663 dbSNP
rs1215797360 2669 dbSNP
rs371553131 2670 dbSNP
rs930599251 2678 dbSNP
rs1185848765 2680 dbSNP
rs1244100284 2683 dbSNP
rs927312007 2685 dbSNP
rs1044824794 2686 dbSNP
rs1444289873 2692 dbSNP
rs950150241 2696 dbSNP
rs917355096 2699 dbSNP
rs1410342443 2706 dbSNP
rs991930069 2712 dbSNP
rs1344567649 2715 dbSNP
rs1455547388 2719 dbSNP
rs956551798 2720 dbSNP
rs782754930 2721 dbSNP
rs979376089 2727 dbSNP
rs554903383 2728 dbSNP
rs1282068395 2730 dbSNP
rs563818836 2748 dbSNP
rs1028652576 2749 dbSNP
rs1305628347 2758 dbSNP
rs1327754711 2764 dbSNP
rs146834934 2770 dbSNP
rs569369190 2777 dbSNP
rs557469377 2778 dbSNP
rs1264207206 2779 dbSNP
rs965760588 2782 dbSNP
rs1018717411 2785 dbSNP
rs1234835794 2788 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 7327.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucuuaggaaCGGACCCACg 5'
                    | ||||||| 
Target 5' ---------aGGCUGGGUGc 3'
1 - 11
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000345496.2 | 3UTR | AGGCUGGGUGCUGUGGCUCACGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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