pre-miRNA Information
pre-miRNA hsa-mir-1185-1   
Genomic Coordinates chr14: 101042977 - 101043062
Synonyms MIRN1185-1, hsa-mir-1185-1, MIR1185-1
Description Homo sapiens miR-1185-1 stem-loop
Comment This sequence was proposed as a miRNA candidate by Berezikov et al by RAKE analysis .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1185-1-3p
Sequence 53| AUAUACAGGGGGAGACUCUUAU |74
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 14 + 101043033 29233923 MiREDiBase
A-to-I 7 14 + 101043035 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs749794228 1 dbSNP
rs369414498 4 dbSNP
rs771096180 5 dbSNP
rs774958411 7 dbSNP
rs1226171972 11 dbSNP
rs1449899083 14 dbSNP
rs761183893 16 dbSNP
rs1380874583 20 dbSNP
rs771625921 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TSPAN2   
Synonyms NET3, TSN2, TSPAN-2
Description tetraspanin 2
Transcript NM_005725   
Expression
Putative miRNA Targets on TSPAN2
3'UTR of TSPAN2
(miRNA target sites are highlighted)
>TSPAN2|NM_005725|3'UTR
   1 AGCTACTTCTACATGAAAATTGCAATCTAAAGCTTTCATACCAAATGTCACAGGAGCTGTCTCCCAGCTCATTTTTAACA
  81 CTGAAATGACATTAGGATCTAAAATAATTTGCTGTCAATTGTACATTTGCATGAGTACGTATGTTTGGCTCATTACTGGT
 161 TTACCCCTTGAGTGAATGCCTGTTTATGATGACTGAGAGCATATTCATGTGTGATCTGCGTGTTTCTGGAATATGCTTTA
 241 TACGTAATGAAATCTGTTTGCTGGGAATTCCTGATTCTTGTTATATAAGAAGAACAACCTATTTCGCTCCCAGAAAAAAA
 321 AGATCAAAGAGCTTTCAGAAACTTTGAGAACTTGGCTATTTAGAAAAAGTGATAATGGGTCAGTTTCTCAGACTGTAGCC
 401 ATTGAAAATTAGATGCAGAGAATTCAGAGATTTCTTCTTAATGGAAGTAATAAGCTGTAAGAATTGAGAGATCACAATGG
 481 AGTGTTAAAACTGACTGTGTCTAAGTTGGGTGTAAGGGTTTCCTGGGTTTTTTTATATACATGCTCTCCCCAGAATACAG
 561 TAAACCACAGTTTTAGAACTAAACACATCTGTAAAACTAAATATAGCATGGAAAATCCAATTTGAATAAGTCATGCTTTC
 641 CTAGAATTTAAAAATAAAAAAGTCTTCCTCTGGAAAGAGAAGTCACACAGACAATCATGTGCCCTATAAAAGTGAGTGTT
 721 TATAGGACTAAAAAACTTTTAACAACTTTTTAAGGAAATATTTTTGTTCTTATACAAAAACATGTAAATATTGCTTTATT
 801 ACTTTCATTTTCTGACCCTGCTGTAAACTACTGCAACCCTCACATCCTCAAAGGGACTTTTATGTCAAACTCTTCTGTTT
 881 CTCCAAATATAAGGAAAAAAGACTAAAGCAAGAGATCTGGCAGTTGAAAATTGTGGGAAAGAGAATTTGTATGGGCACTG
 961 TATCTATGAAATACCTCATAACTTACGTTTACATGTTTTCCTAACTTTTTGTATTTTTCTTGTATAGCCACCTAGAGAAT
1041 TCTTCATAGATTAAGAACTACAGTTTTCACCACTTAACATAAGTAAAACAAAGTCCTTCATAATTTAACCATTAGCATCT
1121 TTGGCCAAACCAAAATAAAGAAAAGCATCTTCTCCTAGTTGTGTGTGGGCAACAGAAACAAGTTAAGGAAACAAAAATAC
1201 TTATATATACACAGAACAAAAATAATGTTCTTTTTATGCAAATCCCCTGTGAAAATAAAATTTTCAATGTTTTTTTGGTC
1281 TTAACGCTTCATTTTAACTTAGTAAACCCAAATTTAGGATTTACATTGGCAAATTTTTCAGTGATTTTTAACGTGTTACA
1361 TTTAGTAAACCATAGATTTTTTAAAAACTACATTTTGTAAGGCCACACATAAGTGAAAATACGGAAGGCTTTGGAAACCC
1441 CCAGATGAACTTCTATACATGTGAAAACACAAGTCTTTGAGTGTGCACTAAAAGTGTCACACTCCCAAAAAACTCACAAA
1521 ACATTTTGCTAAAAAGATATGACTGCTTGAAATAGTCTCTCTCCCATGGAGAACCACATTTCTCTTTCTGCCATACTTGC
1601 TACTGCTACTGATTTTGGAGGAAATTTTTCTAGAAGAACAAAGGTCATATTTGAGGCAAGCTAAAAACTTAATTATACAT
1681 GGCTACTTTACTGTGTCTGTAGCTAAAGAAAAATTATTTTACAAAAATTACTTCATGAAATATAGTTTGTACCCCAGTAG
1761 TTGAGAAATGTGACCTTTTAGGCAAAGAACAGGCAGTCCATCTCTCTTAGCTTTAGTTTATCTCTCTGCCTGAAGACAGG
1841 AAACAGGCCCAAGTGCATACTCGGGTTCTTTCCAACTCAGAATCATCTCTGATTCCACAAAAGTGAGTTTAGTTTCCTAT
1921 CTGAATTAACAACTTTAAAGGAGACTATAATAGTTAAAAGTGGAAGAATAGAAATAAATAAATTTAAAATGAAATTAATT
2001 AAAGTAGAAGAGAAGGGTTCTGTTCCATGTACGATTAATGTGCCCCTTTTGGAGATAAGCTTTCCAAAATATGCGTATGA
2081 GTAAAATTAGAGAATTCCACCACTAAGCAACAATAGATTTTATATGTGTGTGTGGATATATATACACACACACACAGAAA
2161 GATGAATATATATATATATATATCTGTATAGACACACATATAATATATATAGATATATAATCCCTATATATCTTGAATCT
2241 ACAAATATCTTTATATGTATATAATTTGAATATATACATGTATGTATATACAGATGTGTGTGTATATATATATATACATA
2321 CACATATACATAAATTTTCAGCTATTTCTGTTCCCCTGAACTAATTTGAGATTAGACCCAAACATGCTTTTAAATGTCTC
2401 ATGCCAAGGCACTGAATTAAGACTTCTTAATGTTGAAATATTTTAAGTGATTTCATATTAAATTTTCTATATACTGAAAA
2481 AAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uauucucAGAGGGGGACAUAUa 5'
                 | | : :||||||| 
Target 5' atatataTATATATCTGTATAg 3'
2170 - 2191 143.00 -7.10
2
miRNA  3' uauucuCA-GAGGGGGACAUAUa 5'
                || :|:::|:|||||| 
Target 5' ctttttGTATTTTTCTTGTATAg 3'
1005 - 1027 140.00 -10.30
3
miRNA  3' uaUUCUC--AGAGG-----GGGACAUAua 5'
            |||||  |:| :     | ||||||  
Target 5' gaAAGAGAATTTGTATGGGCACTGTATct 3'
937 - 965 130.00 -7.75
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30137222 9 COSMIC
COSN30480154 15 COSMIC
COSN31492651 36 COSMIC
COSN26677103 37 COSMIC
COSN30166628 56 COSMIC
COSN15174012 59 COSMIC
COSN30453438 71 COSMIC
COSN19633497 101 COSMIC
COSN30656354 109 COSMIC
COSN28885401 115 COSMIC
COSN18723626 135 COSMIC
COSN25716433 139 COSMIC
COSN30509922 173 COSMIC
COSN30158300 220 COSMIC
COSN31553994 244 COSMIC
COSN19661523 291 COSMIC
COSN31516547 306 COSMIC
COSN31481723 325 COSMIC
COSN31960288 364 COSMIC
COSN31548791 420 COSMIC
COSN31517695 461 COSMIC
COSN31515663 470 COSMIC
COSN31548792 470 COSMIC
COSN20095220 496 COSMIC
COSN26577349 618 COSMIC
COSN31547936 701 COSMIC
COSN31537872 709 COSMIC
COSN31570820 734 COSMIC
COSN31516854 777 COSMIC
COSN31590093 791 COSMIC
COSN31582808 964 COSMIC
COSN28794456 966 COSMIC
COSN31549611 983 COSMIC
COSN16678085 987 COSMIC
COSN28640720 1012 COSMIC
COSN31564820 1037 COSMIC
COSN22180581 1095 COSMIC
COSN27268521 1111 COSMIC
COSN8635430 1150 COSMIC
COSN7173110 1247 COSMIC
COSN31528495 1258 COSMIC
COSN21731532 1402 COSMIC
COSN5999516 1964 COSMIC
COSN6503862 2058 COSMIC
COSN5730904 2074 COSMIC
COSN7173109 2108 COSMIC
COSN6503861 2113 COSMIC
COSN22830769 2182 COSMIC
COSN20095218 2187 COSMIC
COSN20095216 2302 COSMIC
COSN20090305 2304 COSMIC
COSN28136246 2309 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs553526407 2 dbSNP
rs748947622 5 dbSNP
rs967863249 12 dbSNP
rs575243719 13 dbSNP
rs189370335 14 dbSNP
rs781294910 19 dbSNP
rs757078838 20 dbSNP
rs751512717 24 dbSNP
rs764140651 27 dbSNP
rs1449680358 31 dbSNP
rs763066303 35 dbSNP
rs1186124872 46 dbSNP
rs752958402 48 dbSNP
rs765403371 50 dbSNP
rs376007847 61 dbSNP
rs1035456316 63 dbSNP
rs1455766542 68 dbSNP
rs994200089 78 dbSNP
rs1392136453 79 dbSNP
rs1407413575 80 dbSNP
rs897372471 88 dbSNP
rs1474429392 93 dbSNP
rs1410061991 96 dbSNP
rs535267715 96 dbSNP
rs3738705 101 dbSNP
rs1472736755 102 dbSNP
rs889999851 115 dbSNP
rs1250371490 123 dbSNP
rs1358403755 123 dbSNP
rs1207799012 124 dbSNP
rs1201849983 127 dbSNP
rs936535537 131 dbSNP
rs1453193824 135 dbSNP
rs1050166658 138 dbSNP
rs17033067 139 dbSNP
rs766866673 141 dbSNP
rs138711253 144 dbSNP
rs935023758 152 dbSNP
rs569681035 165 dbSNP
rs1332390222 177 dbSNP
rs751155714 180 dbSNP
rs1369503633 187 dbSNP
rs1474077472 190 dbSNP
rs567673746 194 dbSNP
rs145969426 197 dbSNP
rs967851832 207 dbSNP
rs142487988 219 dbSNP
rs1350129216 220 dbSNP
rs1277794516 226 dbSNP
rs1438711833 230 dbSNP
rs565686592 235 dbSNP
rs1342119294 237 dbSNP
rs938912272 243 dbSNP
rs927560133 244 dbSNP
rs377614644 267 dbSNP
rs961053732 283 dbSNP
rs980238451 285 dbSNP
rs1482210330 286 dbSNP
rs3738706 291 dbSNP
rs1444579226 295 dbSNP
rs773761492 300 dbSNP
rs994542282 305 dbSNP
rs1015983814 306 dbSNP
rs1170899348 322 dbSNP
rs983230766 322 dbSNP
rs759139870 326 dbSNP
rs1387890882 329 dbSNP
rs1457397323 339 dbSNP
rs961373552 348 dbSNP
rs1461174170 350 dbSNP
rs532295579 355 dbSNP
rs997613233 372 dbSNP
rs796069033 379 dbSNP
rs564937217 382 dbSNP
rs543474206 388 dbSNP
rs900412086 397 dbSNP
rs1295169454 399 dbSNP
rs1436951904 399 dbSNP
rs1005842626 400 dbSNP
rs1017485792 401 dbSNP
rs1478720725 402 dbSNP
rs1256872166 405 dbSNP
rs1347174206 413 dbSNP
rs1246839825 415 dbSNP
rs531447450 424 dbSNP
rs1243018827 437 dbSNP
rs79690531 441 dbSNP
rs542671559 444 dbSNP
rs1246585529 447 dbSNP
rs1049943189 455 dbSNP
rs1379051117 456 dbSNP
rs903697803 458 dbSNP
rs1043500488 461 dbSNP
rs1269736382 477 dbSNP
rs1458756156 478 dbSNP
rs1318231493 479 dbSNP
rs575206371 482 dbSNP
rs901558389 485 dbSNP
rs1282420187 487 dbSNP
rs199663880 497 dbSNP
rs762187734 499 dbSNP
rs5777209 501 dbSNP
rs61428640 501 dbSNP
rs938678182 503 dbSNP
rs1333069078 510 dbSNP
rs114983703 522 dbSNP
rs1262589909 526 dbSNP
rs1330351577 534 dbSNP
rs1439292710 535 dbSNP
rs1044672370 537 dbSNP
rs776778800 541 dbSNP
rs550784400 542 dbSNP
rs1321568771 545 dbSNP
rs1192190245 550 dbSNP
rs942144472 554 dbSNP
rs768563211 557 dbSNP
rs909376092 560 dbSNP
rs1412084964 561 dbSNP
rs902226311 565 dbSNP
rs1473320709 568 dbSNP
rs1156854853 587 dbSNP
rs1344583658 589 dbSNP
rs17033058 606 dbSNP
rs532189101 607 dbSNP
rs1343867093 615 dbSNP
rs946663301 620 dbSNP
rs916516037 630 dbSNP
rs1403346565 634 dbSNP
rs1282944072 636 dbSNP
rs1351175907 641 dbSNP
rs1156472795 646 dbSNP
rs1305467575 662 dbSNP
rs950480559 666 dbSNP
rs1222727127 667 dbSNP
rs991032561 670 dbSNP
rs923040551 671 dbSNP
rs1221262652 680 dbSNP
rs186133660 693 dbSNP
rs1043283 696 dbSNP
rs67978763 713 dbSNP
rs749116834 716 dbSNP
rs1172504512 724 dbSNP
rs112827051 726 dbSNP
rs777667830 729 dbSNP
rs1424333016 734 dbSNP
rs756121479 739 dbSNP
rs12061819 745 dbSNP
rs1366481439 748 dbSNP
rs1423840475 751 dbSNP
rs954253313 755 dbSNP
rs1302745364 759 dbSNP
rs967971025 794 dbSNP
rs1411688270 796 dbSNP
rs1296559642 806 dbSNP
rs1373160809 811 dbSNP
rs1028585409 812 dbSNP
rs569844054 818 dbSNP
rs1357737068 824 dbSNP
rs1245754748 825 dbSNP
rs1274849714 827 dbSNP
rs769908439 828 dbSNP
rs1483849296 829 dbSNP
rs891850198 832 dbSNP
rs1485415206 846 dbSNP
rs1483322295 861 dbSNP
rs1019106754 864 dbSNP
rs1183519330 869 dbSNP
rs1241240393 878 dbSNP
rs1443757423 891 dbSNP
rs1169014436 893 dbSNP
rs1240191834 908 dbSNP
rs999264616 911 dbSNP
rs1431870509 916 dbSNP
rs1057467356 917 dbSNP
rs1353999604 919 dbSNP
rs1448936004 931 dbSNP
rs1002836559 937 dbSNP
rs1381251685 939 dbSNP
rs1212473744 945 dbSNP
rs1298802065 955 dbSNP
rs1212426977 956 dbSNP
rs1343779235 956 dbSNP
rs41274142 966 dbSNP
rs1312229253 971 dbSNP
rs1277943899 978 dbSNP
rs180926811 987 dbSNP
rs780809520 992 dbSNP
rs1188891865 1000 dbSNP
rs1298982463 1004 dbSNP
rs542932611 1011 dbSNP
rs531272647 1014 dbSNP
rs1184998212 1022 dbSNP
rs1419130729 1027 dbSNP
rs149210916 1034 dbSNP
rs939181694 1042 dbSNP
rs1359397714 1043 dbSNP
rs1469747072 1064 dbSNP
rs1321868419 1068 dbSNP
rs1311677918 1073 dbSNP
rs74386741 1076 dbSNP
rs923020519 1078 dbSNP
rs1367891086 1079 dbSNP
rs1220416597 1082 dbSNP
rs973216470 1089 dbSNP
rs940112706 1094 dbSNP
rs538580720 1098 dbSNP
rs750818896 1108 dbSNP
rs571382879 1115 dbSNP
rs1270016073 1118 dbSNP
rs1445039003 1119 dbSNP
rs1214871525 1129 dbSNP
rs1427890458 1132 dbSNP
rs1241701361 1137 dbSNP
rs1478480261 1140 dbSNP
rs559344494 1145 dbSNP
rs964312000 1146 dbSNP
rs1417077616 1153 dbSNP
rs1480189309 1170 dbSNP
rs1160512756 1171 dbSNP
rs1387835035 1181 dbSNP
rs1399269389 1189 dbSNP
rs1183402132 1191 dbSNP
rs1483667283 1198 dbSNP
rs1257081791 1199 dbSNP
rs910209655 1200 dbSNP
rs979106578 1202 dbSNP
rs368699238 1203 dbSNP
rs967972346 1204 dbSNP
rs765518613 1205 dbSNP
rs1228517927 1207 dbSNP
rs1021304448 1208 dbSNP
rs776889424 1210 dbSNP
rs1348487133 1213 dbSNP
rs1204255906 1214 dbSNP
rs954032376 1215 dbSNP
rs1290341694 1217 dbSNP
rs960825845 1218 dbSNP
rs1035744461 1239 dbSNP
rs1267087059 1240 dbSNP
rs1490200553 1249 dbSNP
rs1183013855 1258 dbSNP
rs1002952520 1260 dbSNP
rs1469059250 1267 dbSNP
rs905987601 1270 dbSNP
rs138329843 1277 dbSNP
rs1427021673 1277 dbSNP
rs768952179 1279 dbSNP
rs977070278 1285 dbSNP
rs1489073829 1286 dbSNP
rs1209074823 1287 dbSNP
rs965921347 1290 dbSNP
rs1286202352 1296 dbSNP
rs1031866304 1306 dbSNP
rs1333848298 1308 dbSNP
rs1238221160 1317 dbSNP
rs888004834 1326 dbSNP
rs1358162570 1327 dbSNP
rs1048464515 1333 dbSNP
rs374857691 1353 dbSNP
rs902243157 1354 dbSNP
rs762397341 1357 dbSNP
rs1010489391 1362 dbSNP
rs894850747 1370 dbSNP
rs1436210636 1373 dbSNP
rs150445444 1376 dbSNP
rs1003492319 1383 dbSNP
rs910325673 1392 dbSNP
rs1229256413 1397 dbSNP
rs1162089612 1409 dbSNP
rs1378989936 1414 dbSNP
rs1384182673 1422 dbSNP
rs548988889 1423 dbSNP
rs1169343779 1428 dbSNP
rs1393684383 1439 dbSNP
rs1292281367 1440 dbSNP
rs1036841550 1441 dbSNP
rs939847245 1444 dbSNP
rs1334715853 1445 dbSNP
rs909932445 1446 dbSNP
rs1371835728 1447 dbSNP
rs1308144607 1450 dbSNP
rs527242508 1461 dbSNP
rs1382236259 1472 dbSNP
rs1048510616 1475 dbSNP
rs1229396228 1479 dbSNP
rs115974811 1488 dbSNP
rs199512387 1494 dbSNP
rs1195353959 1495 dbSNP
rs921308903 1504 dbSNP
rs1463078933 1506 dbSNP
rs1182063433 1507 dbSNP
rs1242902919 1511 dbSNP
rs1424170185 1513 dbSNP
rs1194834474 1514 dbSNP
rs758686953 1519 dbSNP
rs1461000142 1537 dbSNP
rs960692318 1545 dbSNP
rs965680183 1549 dbSNP
rs980625893 1552 dbSNP
rs1336070302 1554 dbSNP
rs541676745 1557 dbSNP
rs1383748059 1559 dbSNP
rs754289037 1561 dbSNP
rs970119558 1563 dbSNP
rs1324934809 1567 dbSNP
rs924870664 1568 dbSNP
rs1473716158 1572 dbSNP
rs545591061 1576 dbSNP
rs1202323491 1577 dbSNP
rs746305622 1578 dbSNP
rs1465609785 1583 dbSNP
rs1207282072 1593 dbSNP
rs578220651 1596 dbSNP
rs1267755986 1605 dbSNP
rs1198880387 1632 dbSNP
rs1430772274 1639 dbSNP
rs1479209750 1642 dbSNP
rs1223021249 1643 dbSNP
rs994147231 1650 dbSNP
rs1455111838 1663 dbSNP
rs1286937682 1667 dbSNP
rs902131991 1674 dbSNP
rs1021998459 1678 dbSNP
rs1304049665 1679 dbSNP
rs1334589557 1679 dbSNP
rs1347433757 1680 dbSNP
rs1271707876 1683 dbSNP
rs1221811211 1684 dbSNP
rs1010647874 1714 dbSNP
rs1318080579 1720 dbSNP
rs959286833 1730 dbSNP
rs1033376252 1738 dbSNP
rs779372733 1742 dbSNP
rs1307012694 1744 dbSNP
rs1390315665 1754 dbSNP
rs943568804 1758 dbSNP
rs888841734 1762 dbSNP
rs1043459095 1766 dbSNP
rs1003641338 1767 dbSNP
rs1412578113 1780 dbSNP
rs34557275 1780 dbSNP
rs1420813709 1787 dbSNP
rs1156601266 1798 dbSNP
rs1458254581 1810 dbSNP
rs1303956758 1815 dbSNP
rs1367705661 1822 dbSNP
rs764273131 1831 dbSNP
rs1302633329 1832 dbSNP
rs1374613180 1844 dbSNP
rs1393632052 1848 dbSNP
rs1036957321 1854 dbSNP
rs1458389220 1857 dbSNP
rs1393412071 1858 dbSNP
rs1316668531 1859 dbSNP
rs1247235903 1860 dbSNP
rs577501683 1862 dbSNP
rs1401558203 1863 dbSNP
rs1232968557 1871 dbSNP
rs1004006790 1874 dbSNP
rs1481363493 1876 dbSNP
rs1458969155 1882 dbSNP
rs1175377153 1883 dbSNP
rs141742459 1884 dbSNP
rs1424123061 1895 dbSNP
rs1165271751 1900 dbSNP
rs1387242895 1903 dbSNP
rs41274140 1904 dbSNP
rs1163241650 1905 dbSNP
rs1355182447 1919 dbSNP
rs927897161 1921 dbSNP
rs1296934394 1927 dbSNP
rs147937311 1931 dbSNP
rs921244805 1934 dbSNP
rs554605186 1943 dbSNP
rs1244776242 1944 dbSNP
rs944045012 1947 dbSNP
rs7551034 1948 dbSNP
rs1210985703 1950 dbSNP
rs977683159 1951 dbSNP
rs1185141455 1952 dbSNP
rs572083700 1966 dbSNP
rs952195395 1968 dbSNP
rs1443849043 1969 dbSNP
rs1026730273 1971 dbSNP
rs993535183 1980 dbSNP
rs553891452 1986 dbSNP
rs966252922 1990 dbSNP
rs1411683050 1995 dbSNP
rs1168466770 2003 dbSNP
rs1354398651 2004 dbSNP
rs1470599043 2006 dbSNP
rs968850452 2010 dbSNP
rs1019168090 2011 dbSNP
rs1007643417 2013 dbSNP
rs1270359196 2015 dbSNP
rs1363673386 2018 dbSNP
rs1212225723 2020 dbSNP
rs1237951557 2028 dbSNP
rs889290940 2032 dbSNP
rs538906377 2033 dbSNP
rs1314587367 2035 dbSNP
rs1205479085 2040 dbSNP
rs1261225772 2041 dbSNP
rs1460688150 2049 dbSNP
rs1302815535 2052 dbSNP
rs1052480 2053 dbSNP
rs1242877957 2057 dbSNP
rs7553371 2058 dbSNP
rs1422999899 2059 dbSNP
rs1480844838 2066 dbSNP
rs1323574404 2069 dbSNP
rs1427838201 2072 dbSNP
rs892237588 2073 dbSNP
rs1052517259 2074 dbSNP
rs538077710 2075 dbSNP
rs927844868 2076 dbSNP
rs189572726 2077 dbSNP
rs1224872885 2083 dbSNP
rs1451949963 2087 dbSNP
rs28584786 2093 dbSNP
rs1379404829 2097 dbSNP
rs1003174827 2099 dbSNP
rs970799608 2103 dbSNP
rs1454174820 2112 dbSNP
rs11102878 2113 dbSNP
rs1213910464 2119 dbSNP
rs1262795045 2121 dbSNP
rs1490519101 2124 dbSNP
rs1191124523 2125 dbSNP
rs1004165534 2126 dbSNP
rs952209910 2128 dbSNP
rs963812033 2134 dbSNP
rs1477994136 2135 dbSNP
rs888267559 2135 dbSNP
rs919378845 2141 dbSNP
rs1399361405 2143 dbSNP
rs1026844273 2144 dbSNP
rs146517184 2145 dbSNP
rs1365832558 2149 dbSNP
rs1423461634 2157 dbSNP
rs770103316 2157 dbSNP
rs899880401 2158 dbSNP
rs1204153085 2164 dbSNP
rs1442823319 2180 dbSNP
rs1484704750 2180 dbSNP
rs1257190353 2183 dbSNP
rs10641535 2184 dbSNP
rs1281285149 2184 dbSNP
rs34856148 2184 dbSNP
rs375521793 2184 dbSNP
rs202118067 2186 dbSNP
rs201952780 2187 dbSNP
rs1234394906 2188 dbSNP
rs572383651 2189 dbSNP
rs10641534 2191 dbSNP
rs1451173470 2191 dbSNP
rs35699345 2191 dbSNP
rs58420248 2191 dbSNP
rs1235149188 2193 dbSNP
rs527403305 2193 dbSNP
rs1230585383 2194 dbSNP
rs1326776074 2201 dbSNP
rs1041530260 2206 dbSNP
rs1380698052 2208 dbSNP
rs944052036 2210 dbSNP
rs903227160 2212 dbSNP
rs1404639058 2223 dbSNP
rs1410086417 2226 dbSNP
rs1041940704 2231 dbSNP
rs953668348 2247 dbSNP
rs114067974 2253 dbSNP
rs116673023 2255 dbSNP
rs1248439505 2256 dbSNP
rs1289915630 2259 dbSNP
rs1171007599 2260 dbSNP
rs1355700624 2271 dbSNP
rs538397994 2273 dbSNP
rs1275673012 2275 dbSNP
rs1436585141 2276 dbSNP
rs1052206223 2277 dbSNP
rs1178352382 2277 dbSNP
rs1191512060 2279 dbSNP
rs937511527 2280 dbSNP
rs1446895387 2286 dbSNP
rs1426303248 2288 dbSNP
rs1181341486 2295 dbSNP
rs926351760 2296 dbSNP
rs982306863 2302 dbSNP
rs1394172279 2304 dbSNP
rs571115694 2304 dbSNP
rs773188825 2304 dbSNP
rs1211232457 2306 dbSNP
rs1407985777 2311 dbSNP
rs906208382 2314 dbSNP
rs1015296694 2317 dbSNP
rs34617679 2317 dbSNP
rs774250082 2317 dbSNP
rs777566531 2317 dbSNP
rs1272016231 2319 dbSNP
rs982676555 2319 dbSNP
rs1277626761 2320 dbSNP
rs952583924 2321 dbSNP
rs1462920713 2328 dbSNP
rs1202200415 2330 dbSNP
rs1254961915 2339 dbSNP
rs909825702 2344 dbSNP
rs1048690925 2348 dbSNP
rs1370837224 2350 dbSNP
rs1477231598 2355 dbSNP
rs1269318838 2356 dbSNP
rs929840485 2357 dbSNP
rs1224973312 2360 dbSNP
rs1431382137 2378 dbSNP
rs1026916001 2385 dbSNP
rs1342111224 2388 dbSNP
rs919310763 2395 dbSNP
rs1401697280 2396 dbSNP
rs996654326 2400 dbSNP
rs1320610445 2402 dbSNP
rs972182337 2405 dbSNP
rs1218149899 2407 dbSNP
rs1284437774 2408 dbSNP
rs1326281108 2409 dbSNP
rs899703415 2418 dbSNP
rs966133509 2422 dbSNP
rs1255754155 2438 dbSNP
rs1019688682 2447 dbSNP
rs565481475 2448 dbSNP
rs1309965990 2450 dbSNP
rs1259291128 2451 dbSNP
rs768264525 2455 dbSNP
rs543716984 2469 dbSNP
rs953615483 2472 dbSNP
rs868496599 2476 dbSNP
rs947406685 2480 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 10100.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10100.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000369516.2 | 3UTR | AAUAUAUAUAUAUAUAUAUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000369516.2 | 3UTR | AUAUAUAUAUAUAUAUAUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000369516.2 | 3UTR | UGAAUAUAUAUAUAUAUAUAUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
114 hsa-miR-1185-1-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066415 TBK1 TANK binding kinase 1 2 4
MIRT073567 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT074516 USP1 ubiquitin specific peptidase 1 2 4
MIRT080576 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT086539 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT086547 MOB4 MOB family member 4, phocein 2 2
MIRT088684 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT090811 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT095500 PURA purine rich element binding protein A 2 2
MIRT109530 KLHL15 kelch like family member 15 2 6
MIRT109807 ZFX zinc finger protein, X-linked 2 2
MIRT117888 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT120273 GSK3B glycogen synthase kinase 3 beta 2 4
MIRT149892 LDLR low density lipoprotein receptor 2 2
MIRT178475 LCOR ligand dependent nuclear receptor corepressor 2 4
MIRT193445 RORA RAR related orphan receptor A 2 2
MIRT198527 DSG2 desmoglein 2 2 2
MIRT226427 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT227669 SET SET nuclear proto-oncogene 2 2
MIRT320405 HOXA9 homeobox A9 2 2
MIRT407774 MRPL35 mitochondrial ribosomal protein L35 2 2
MIRT439228 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT439312 VAT1L vesicle amine transport 1 like 1 1
MIRT439421 TMOD1 tropomodulin 1 1 1
MIRT439446 TMEM104 transmembrane protein 104 1 1
MIRT439524 STIM2 stromal interaction molecule 2 1 1
MIRT439612 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 1 1
MIRT439997 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 1 1
MIRT440017 PCSK1 proprotein convertase subtilisin/kexin type 1 1 1
MIRT440131 NCOA4 nuclear receptor coactivator 4 1 1
MIRT440311 LRRC1 leucine rich repeat containing 1 1 1
MIRT440475 IAPP islet amyloid polypeptide 1 1
MIRT440511 HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 1 1
MIRT440617 FOXA2 forkhead box A2 1 1
MIRT440666 FBXL16 F-box and leucine rich repeat protein 16 1 1
MIRT440705 ERO1LB endoplasmic reticulum oxidoreductase 1 beta 1 1
MIRT441007 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 1 1
MIRT441018 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT441062 C1orf43 chromosome 1 open reading frame 43 1 1
MIRT441209 ARCN1 archain 1 1 1
MIRT449461 HAT1 histone acetyltransferase 1 2 2
MIRT467104 SRI sorcin 2 2
MIRT468060 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 10
MIRT468476 SESN3 sestrin 3 2 4
MIRT473533 MAX MYC associated factor X 2 2
MIRT473852 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474711 KIF13A kinesin family member 13A 2 6
MIRT481665 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT485120 SF3B3 splicing factor 3b subunit 3 2 2
MIRT493055 MTFR1 mitochondrial fission regulator 1 2 2
MIRT504258 C1orf147 chromosome 1 open reading frame 147 2 4
MIRT504361 ARID1B AT-rich interaction domain 1B 2 4
MIRT505748 SENP1 SUMO1/sentrin specific peptidase 1 2 8
MIRT506298 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 6
MIRT508442 ZNF608 zinc finger protein 608 2 4
MIRT512782 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT520447 TSPAN2 tetraspanin 2 2 4
MIRT522133 NRBF2 nuclear receptor binding factor 2 2 6
MIRT522395 MYADM myeloid associated differentiation marker 2 4
MIRT523397 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 4
MIRT523938 E2F8 E2F transcription factor 8 2 4
MIRT524349 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524711 BRMS1L breast cancer metastasis-suppressor 1 like 2 4
MIRT525134 ZNF256 zinc finger protein 256 2 2
MIRT525710 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 2 2
MIRT531264 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT538844 BTG1 BTG anti-proliferation factor 1 2 2
MIRT541366 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT542093 KCNK10 potassium two pore domain channel subfamily K member 10 2 6
MIRT543770 RBM12B RNA binding motif protein 12B 2 4
MIRT543940 NCOA7 nuclear receptor coactivator 7 2 2
MIRT545150 GABRG1 gamma-aminobutyric acid type A receptor gamma1 subunit 2 2
MIRT545842 ZNF264 zinc finger protein 264 2 4
MIRT548057 GOLGA7 golgin A7 2 2
MIRT549242 ATXN1L ataxin 1 like 2 4
MIRT551829 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT552484 ZNF136 zinc finger protein 136 2 2
MIRT553663 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT554988 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT555760 PCTP phosphatidylcholine transfer protein 2 2
MIRT556923 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT564991 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT566458 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT566538 PANK3 pantothenate kinase 3 2 2
MIRT567732 DLX2 distal-less homeobox 2 2 2
MIRT570081 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 2
MIRT571735 RNF11 ring finger protein 11 2 2
MIRT573529 MDM2 MDM2 proto-oncogene 2 2
MIRT574459 RPS16 ribosomal protein S16 2 2
MIRT574992 Phka1 phosphorylase kinase alpha 1 2 3
MIRT576349 Pxdn peroxidasin 2 2
MIRT610196 CD99 CD99 molecule (Xg blood group) 2 4
MIRT612920 GPRIN3 GPRIN family member 3 2 2
MIRT615021 DUSP6 dual specificity phosphatase 6 2 2
MIRT623573 IRS1 insulin receptor substrate 1 2 2
MIRT624437 CASD1 CAS1 domain containing 1 2 2
MIRT628714 ZNF585A zinc finger protein 585A 2 2
MIRT639565 PCK1 phosphoenolpyruvate carboxykinase 1 2 4
MIRT641485 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT641657 PAPOLG poly(A) polymerase gamma 2 2
MIRT642210 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT653010 STX7 syntaxin 7 2 2
MIRT656130 MSH6 mutS homolog 6 2 2
MIRT656893 KIAA2018 upstream transcription factor family member 3 2 2
MIRT660130 BRPF3 bromodomain and PHD finger containing 3 2 2
MIRT660855 AFAP1 actin filament associated protein 1 2 2
MIRT676843 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 3
MIRT681473 DIP2A disco interacting protein 2 homolog A 2 2
MIRT682253 RS1 retinoschisin 1 2 2
MIRT694296 COPB2 coatomer protein complex subunit beta 2 2 2
MIRT694401 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT705277 BACH1 BTB domain and CNC homolog 1 2 2
MIRT720833 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT735713 SIRT1 sirtuin 1 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1185-1 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-1185-1 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1185-1-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-1185-1-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-1185-1-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-1185-1-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1185-1-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1185-1-3p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1185-1-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1185-1-3p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-1185-1-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-1185-1-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-1185-1-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1185-1-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1185-1-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-1185-1-3p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-1185-1-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-1185-1-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-1185-1-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (TOV-112D)

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