pre-miRNA Information
pre-miRNA hsa-mir-873   
Genomic Coordinates chr9: 28888879 - 28888955
Synonyms MIRN873, hsa-mir-873, MIR873
Description Homo sapiens miR-873 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-873-3p
Sequence 46| GGAGACUGAUGAGUUCCCGGGA |67
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760528397 3 dbSNP
rs773403294 9 dbSNP
rs1273846238 13 dbSNP
rs1339396073 15 dbSNP
rs1247999695 18 dbSNP
rs377380148 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMED7   
Synonyms CGI-109, p24g3, p24gamma3, p27
Description transmembrane p24 trafficking protein 7
Transcript NM_181836   
Expression
Putative miRNA Targets on TMED7
3'UTR of TMED7
(miRNA target sites are highlighted)
>TMED7|NM_181836|3'UTR
   1 CTACGTTTTGAGAATTGATGCACCATTGCCACTGTAATATTGCTGTCCTCTAATTAATTTTAGGTACTGAAGAACTTAAT
  81 ATTGGCAACATTTTTAAATCCTTACTCATACACTTGTTGGGAGGGATGTACAATGCATATTCCCAAACTGTGGAAAGGAC
 161 ACCTTTTTTTATTTGTAAAGGTGGAAAAACTTTGGAACTCATTTTGGGCTATTCATGTTAAATATTCAACACCAATGATC
 241 TACTCTGTTCGCAGTTGTTTATATCTACTCTTCGCACACTAAACTTTGGTATTTTGATTCCTTTTAACCATTTAAGACTA
 321 CTTTTCTTATAGGTAGTTGATATTTTAAAAACTTTAGATTTAATGTCTACATGTGTTAGGGAGGAAGAAAATTGCCTTTT
 401 AATTGTTAATAAGAAAACCAAATGTGATGAACTGTAGCCCAAGCCCTATTCTGCACTGTTCAGTTTTATGGAGGAAAAAT
 481 AAATCTACCATAGGAATGTTAGTTAATATTGATATATCATGGTAAAATTGATTTCTCACTAGCTTAGAAAATGTCAGACT
 561 TTTGTTTTTGGGGTTTATAATTTAAACCAGCTATGCTATTTTTTCATAAAGGCATTTGTAGTACACAGAAAACAGTAGTT
 641 TCAGTAGTGTAAAAGAGTTTATACAGGCCTTAAATATCAGACTTTGTAACAGGTAGAAATATTACAGAATAATTTAAGAC
 721 ACTACAATGGGGGCAAATGAAATAGGAAAATTTTTAGTGAGTTACACGTACTCATTACATTTTCAGTGCTTTTACAAGGA
 801 AAAAAGGTGATATGTTTAATTTTAAAATTTTAATTGGCTAGCTCTTGCCCTTATATGACTTTAATGTCTGTGAGTCATTC
 881 CCAGCTTAAATTAACAATTGTTAGTATTAGTCTCACACATAAGTGCCATACATTTTATCCTCATGGATGTGATGCACTGA
 961 AAAGTTAGTTGCTCTCCTTTTTTCTTTTTTTTGTCGTGCATATTTTATTTCTGTAGTTTCTGGTTAGCTACCCTAAAGTG
1041 ATTTAAAAATTTAGAATGCTTTGTGTTTCCTATTTGGTAATCTTCATTGACTTTTCTTTAGTTAATGAGTATTAAATAGT
1121 GCATATTCTGTAGACTATAGGGTTTACATTGTGTTGCATCTTATAACTTGTATAGATTGAGCTGATTGAAATAAGATTTT
1201 GTTCCAAGTATTATCTGATAGAATACAAGATGATTCAAAATTATATAGATATTTAAAGCTTTTCTGCTGTTTTTTTTTTT
1281 TTTAATTGCAACTGCTTTTCTGCCGTGCCTCTCTTCCCTACCCAAAAGTGATGAGTTCTGAACAAGACAAGACTGTCATA
1361 TTGTAGAGACTTTGGTATGTGATACCATAGAATACTGATTGGATAGCCATCCTAGTCACTTACCAATACTGACTAGAAGT
1441 TAACTCTTAATTCTAAGCTATCTTAAAATGCATATATATACTTCTTGCATGGAAGAGCAAAACAAATTCAAGTTGTCATG
1521 CCTGATAATTTCAGATGCCACCGTATAGCAAAGGGTGAACATGTTTTCAACCCTTTAACTTTTTACGGTGTTTGAAGACC
1601 AGCTACTCCTTAATATTTATCAATGGATTAAGAAGTTTAAGATTTTGCAGATTTATCAATTTGGGTTTTTGTACTGAAGT
1681 TGTCTTGCGGCTTTGCAAGTGTCCCTTTATATTTAAATTTGAAAGTTGTAAGCACTGATGTTAATGTGATTGATCAGCAT
1761 GGGCATATGTAAAATGTCCTTTTCTGGTTGCCTCTCTATGCTATTGTGTTCAGATACTTACACCATAATTAAACAGTAAG
1841 TTATAGACTTGCTGAGTTTGGCATAGATAGTGCACTCATTTAATCTGTGCCTCTCAAAACTTCAGAATATTAGCATATTA
1921 CCACAAATAATTTTTGGTGAAACTATTGAGATATTAAAATTTTTGAAATCACTACTGTTACCTGTTATAGAAAATAGTGT
2001 TGGCTTAGTCTAGTCTCTGTGTAACTGGTTACATTTTGATGGTTGTCTATACTCAACTGGATATGTGTATGTAAATTAGA
2081 AAATACATACCTATCCAGACATAAATGCTAAGTAACATTTTTTTCTTCCTCCAACTACATAATTTGTAGCTCATCATTTT
2161 TCCTTAATCCTTTCCTAACTTGTTGCAGCAGTTTGAATTTCCCAGATATTTATGTTTGAACATAATGGCTCAGAATACAT
2241 ATTTGAACATCATAGTTGTATATATTTTTAAAGTAGAATAAATAATGGAAAGCAACTTGATATACAAGTTTATACTAAAA
2321 TTTCAACTGTGTGAAGATACATTTTAAGGCATTACTTTGCTAATAATCTACACATTCTTTTTTCTATTAAATAAACAAAT
2401 GGTTTGTGGTTCACAGCTTTCATCCAAGCTTGGTGATAATCAATTTTGAAAATACAGTGGACTGAAAAGCAAATTTATTC
2481 TTTCGAAGATTTCATTTAAATCTCTGTACTATGCATTTTTGTTTCAGTTTGTAAATGTGTAACATTTATAGTTAAATAGG
2561 ACAAAGCAGGCCCTATGACTATTGTTTTCAAAAAATTAATATATAAATAATTCAGAGGGGTTTTTCATTTACTTTTGAAA
2641 AGAAATTTCTTTAACAGGATTGCACCTATCAATTTCTTGTAGAATAAAAAAAAATCTTTCAACAAACTGACTTTACTTGT
2721 TTCTGTCAGGATTTAAATCTTTCTAAAGCTCCTTATAAACTTAAAGCCTAGAGTACAGTTCTGTAATGAGAGTGATTATT
2801 TATTTGGTATTTTATTAAAATATCTGAGGGACTGTCCAAGAAAGAAGGTGAAAGAGAAATACCACGTCTGTACTGCCTAA
2881 TTTGTAACCTTCTCTTTGCATTCCTTACTGAAAGTTTGTGTAGGTGAAAAGCAGTTAAATCATCAGTTGCTCTAAAGAGG
2961 TCTTAATTTTTAAGTAAATTACCTTTAGTTTGTATATTACC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agggcccuugaGUAGUCAGAGg 5'
                     :||:|||||| 
Target 5' acaattgttagTATTAGTCTCa 3'
894 - 915 135.00 -12.30
2
miRNA  3' agggcccUUGAGU-A-GUCAGAGg 5'
                 ::||:| | :|||||| 
Target 5' tagtgttGGCTTAGTCTAGTCTCt 3'
1995 - 2018 131.00 -13.50
3
miRNA  3' agGGCCCUUGAGUAGUCA--GAGg 5'
            | |  || ||||||||  ||| 
Target 5' agCAGTTAAATCATCAGTTGCTCt 3'
2930 - 2953 128.00 -12.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26566710 21 COSMIC
COSN30487733 24 COSMIC
COSN30104161 43 COSMIC
COSN30490447 63 COSMIC
COSN28868455 164 COSMIC
COSN28805218 353 COSMIC
COSN31548621 367 COSMIC
COSN30172337 485 COSMIC
COSN30174552 547 COSMIC
COSN31536007 555 COSMIC
COSN22577728 741 COSMIC
COSN31521765 806 COSMIC
COSN31565311 825 COSMIC
COSN28806018 826 COSMIC
COSN28724130 945 COSMIC
COSN26632784 984 COSMIC
COSN26324156 1044 COSMIC
COSN25821084 1208 COSMIC
COSN20101694 1269 COSMIC
COSN27208689 1270 COSMIC
COSN31519558 2150 COSMIC
COSN30541845 2169 COSMIC
COSN31547839 2366 COSMIC
COSN31485654 2377 COSMIC
COSN31538704 2404 COSMIC
COSN31485155 2464 COSMIC
COSN31607024 2480 COSMIC
COSN32064931 2516 COSMIC
COSN21746198 2710 COSMIC
rs78821571 2140 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1182273289 1 dbSNP
rs763684193 4 dbSNP
rs368910159 18 dbSNP
rs752403926 19 dbSNP
rs1040253800 21 dbSNP
rs765519431 23 dbSNP
rs1206541208 26 dbSNP
rs759954768 29 dbSNP
rs1267674328 34 dbSNP
rs184304369 38 dbSNP
rs1375613262 42 dbSNP
rs1273618268 43 dbSNP
rs1158157508 47 dbSNP
rs9637898 50 dbSNP
rs1212660433 56 dbSNP
rs1441928969 57 dbSNP
rs943269851 61 dbSNP
rs890574113 63 dbSNP
rs764350228 75 dbSNP
rs1050888311 82 dbSNP
rs565538234 95 dbSNP
rs756540983 103 dbSNP
rs889048821 108 dbSNP
rs866126869 114 dbSNP
rs1218883368 123 dbSNP
rs1351829326 126 dbSNP
rs79975909 133 dbSNP
rs1223019917 134 dbSNP
rs1461022697 137 dbSNP
rs899714080 140 dbSNP
rs180942516 145 dbSNP
rs1040017291 146 dbSNP
rs1317994419 150 dbSNP
rs1341515190 156 dbSNP
rs753032616 159 dbSNP
rs1247612987 160 dbSNP
rs79522669 162 dbSNP
rs75254463 164 dbSNP
rs1445660374 171 dbSNP
rs374862642 171 dbSNP
rs935971367 175 dbSNP
rs571182485 176 dbSNP
rs1232111294 183 dbSNP
rs1298352912 197 dbSNP
rs1486613144 201 dbSNP
rs1401273549 210 dbSNP
rs927922231 211 dbSNP
rs1260754750 212 dbSNP
rs551160407 213 dbSNP
rs1189936974 221 dbSNP
rs981199320 229 dbSNP
rs1474851796 230 dbSNP
rs1358287858 232 dbSNP
rs1414283129 235 dbSNP
rs1041391096 240 dbSNP
rs1451890576 244 dbSNP
rs1158272676 245 dbSNP
rs1157626153 247 dbSNP
rs1406351800 250 dbSNP
rs1311480299 261 dbSNP
rs945769064 263 dbSNP
rs917014266 264 dbSNP
rs1410990677 269 dbSNP
rs1416334191 273 dbSNP
rs531109886 274 dbSNP
rs969629908 276 dbSNP
rs73260555 280 dbSNP
rs1264490085 282 dbSNP
rs1259823664 283 dbSNP
rs553252659 285 dbSNP
rs1345316057 287 dbSNP
rs1195992021 295 dbSNP
rs1255152519 297 dbSNP
rs114463472 306 dbSNP
rs1182894399 307 dbSNP
rs1262777302 313 dbSNP
rs528624675 329 dbSNP
rs1417459226 337 dbSNP
rs559443964 343 dbSNP
rs1378386281 347 dbSNP
rs400570 353 dbSNP
rs1014920650 356 dbSNP
rs1430934770 357 dbSNP
rs983465860 358 dbSNP
rs954754425 362 dbSNP
rs1334118734 363 dbSNP
rs1018586501 369 dbSNP
rs1310434784 375 dbSNP
rs1374832264 400 dbSNP
rs532280406 402 dbSNP
rs1389132691 409 dbSNP
rs1305697386 418 dbSNP
rs1331266278 433 dbSNP
rs1236046316 445 dbSNP
rs375592145 450 dbSNP
rs1219959940 454 dbSNP
rs1030838908 455 dbSNP
rs1205759425 456 dbSNP
rs113551101 457 dbSNP
rs563259364 461 dbSNP
rs1268168293 462 dbSNP
rs73260552 463 dbSNP
rs1192047074 468 dbSNP
rs1394832032 470 dbSNP
rs899661151 476 dbSNP
rs1351252986 477 dbSNP
rs1322033111 487 dbSNP
rs1173026046 490 dbSNP
rs765852650 491 dbSNP
rs1018130622 492 dbSNP
rs1424994394 506 dbSNP
rs762533023 511 dbSNP
rs904459796 515 dbSNP
rs1041340146 517 dbSNP
rs1476883872 518 dbSNP
rs945716471 519 dbSNP
rs1300867516 521 dbSNP
rs1369936065 528 dbSNP
rs1228819445 530 dbSNP
rs1010737118 539 dbSNP
rs895537204 548 dbSNP
rs1057277702 553 dbSNP
rs1052281307 554 dbSNP
rs1266110329 556 dbSNP
rs937148340 573 dbSNP
rs1212020709 575 dbSNP
rs928038084 577 dbSNP
rs772878174 585 dbSNP
rs574271703 586 dbSNP
rs1045040820 587 dbSNP
rs1428436245 595 dbSNP
rs1166183562 597 dbSNP
rs1462605109 598 dbSNP
rs927437396 608 dbSNP
rs1323333754 610 dbSNP
rs973626531 612 dbSNP
rs1393223236 613 dbSNP
rs1431015756 623 dbSNP
rs948085824 631 dbSNP
rs910134804 632 dbSNP
rs867482049 634 dbSNP
rs1213893236 636 dbSNP
rs1219169138 641 dbSNP
rs1313415971 655 dbSNP
rs1467828425 662 dbSNP
rs769303243 668 dbSNP
rs942230961 672 dbSNP
rs1258667776 674 dbSNP
rs1220319364 682 dbSNP
rs1231491061 684 dbSNP
rs1315973250 687 dbSNP
rs908144091 687 dbSNP
rs984801182 692 dbSNP
rs1330024259 715 dbSNP
rs1218284726 718 dbSNP
rs1294315057 724 dbSNP
rs983413367 727 dbSNP
rs954685023 728 dbSNP
rs73260551 731 dbSNP
rs1474529467 737 dbSNP
rs918724939 739 dbSNP
rs1272663057 740 dbSNP
rs1440665086 742 dbSNP
rs975214657 743 dbSNP
rs1333971177 747 dbSNP
rs1160916477 757 dbSNP
rs1464575028 759 dbSNP
rs698366 766 dbSNP
rs572117379 767 dbSNP
rs1357219080 768 dbSNP
rs776558183 768 dbSNP
rs1019116434 771 dbSNP
rs1000002066 774 dbSNP
rs1292736370 780 dbSNP
rs968565280 785 dbSNP
rs1225650901 790 dbSNP
rs1434963269 795 dbSNP
rs1423356281 798 dbSNP
rs28578472 799 dbSNP
rs1282481379 805 dbSNP
rs1020163999 810 dbSNP
rs116188317 825 dbSNP
rs698365 826 dbSNP
rs368570861 827 dbSNP
rs189374525 829 dbSNP
rs1200298184 848 dbSNP
rs746877565 855 dbSNP
rs1056825479 863 dbSNP
rs557664760 864 dbSNP
rs892407995 865 dbSNP
rs1001680813 867 dbSNP
rs1052228768 881 dbSNP
rs1405300405 889 dbSNP
rs537786898 892 dbSNP
rs1003386431 894 dbSNP
rs906610894 898 dbSNP
rs1432782409 904 dbSNP
rs1251447047 905 dbSNP
rs905626527 910 dbSNP
rs1312241771 912 dbSNP
rs1210233445 913 dbSNP
rs779149025 915 dbSNP
rs1038251934 919 dbSNP
rs1313398964 920 dbSNP
rs942178782 927 dbSNP
rs1233034517 930 dbSNP
rs908073898 932 dbSNP
rs757313103 940 dbSNP
rs909901744 953 dbSNP
rs1346244392 956 dbSNP
rs368835218 959 dbSNP
rs1275917932 960 dbSNP
rs569262089 967 dbSNP
rs1440092627 973 dbSNP
rs1205929644 988 dbSNP
rs930203251 993 dbSNP
rs1469298653 994 dbSNP
rs1193948178 995 dbSNP
rs547790573 996 dbSNP
rs1303890786 997 dbSNP
rs974782266 1002 dbSNP
rs548770981 1006 dbSNP
rs528527585 1007 dbSNP
rs1397075377 1020 dbSNP
rs1411594037 1022 dbSNP
rs771674176 1023 dbSNP
rs1357435889 1024 dbSNP
rs925392670 1029 dbSNP
rs978529739 1033 dbSNP
rs1441906858 1034 dbSNP
rs965550981 1046 dbSNP
rs968516583 1052 dbSNP
rs73260548 1061 dbSNP
rs1271145830 1069 dbSNP
rs1342016596 1071 dbSNP
rs1010092924 1107 dbSNP
rs778103877 1109 dbSNP
rs1270269056 1114 dbSNP
rs1456962719 1115 dbSNP
rs1213906992 1117 dbSNP
rs1254438705 1119 dbSNP
rs1192701904 1120 dbSNP
rs1420610771 1123 dbSNP
rs552257098 1125 dbSNP
rs1382369339 1131 dbSNP
rs1180325195 1135 dbSNP
rs756276200 1140 dbSNP
rs1418850785 1146 dbSNP
rs1437533571 1149 dbSNP
rs1249770586 1151 dbSNP
rs1182309486 1166 dbSNP
rs1462075091 1169 dbSNP
rs1483953730 1172 dbSNP
rs770137007 1175 dbSNP
rs185035876 1182 dbSNP
rs1319378665 1184 dbSNP
rs142238830 1186 dbSNP
rs1010580561 1191 dbSNP
rs1270179357 1201 dbSNP
rs1287692194 1204 dbSNP
rs200948282 1206 dbSNP
rs1001226481 1208 dbSNP
rs1233320536 1215 dbSNP
rs536336641 1229 dbSNP
rs1030959055 1236 dbSNP
rs1037464772 1243 dbSNP
rs1006013286 1244 dbSNP
rs1194662036 1245 dbSNP
rs1398248462 1249 dbSNP
rs906385366 1252 dbSNP
rs1262343696 1267 dbSNP
rs1377613774 1268 dbSNP
rs886587043 1269 dbSNP
rs1023708814 1270 dbSNP
rs1312392826 1270 dbSNP
rs1012714821 1271 dbSNP
rs1047953987 1271 dbSNP
rs1048340774 1276 dbSNP
rs933530611 1280 dbSNP
rs1243571360 1284 dbSNP
rs1356588085 1284 dbSNP
rs1458167409 1284 dbSNP
rs779618501 1284 dbSNP
rs1260993313 1293 dbSNP
rs1203093462 1299 dbSNP
rs1285064695 1304 dbSNP
rs1362711544 1305 dbSNP
rs923564040 1326 dbSNP
rs1451364458 1327 dbSNP
rs1362949340 1331 dbSNP
rs1039405491 1350 dbSNP
rs1190069132 1355 dbSNP
rs1165198125 1363 dbSNP
rs1425558164 1364 dbSNP
rs140602104 1371 dbSNP
rs1186665914 1373 dbSNP
rs58575550 1375 dbSNP
rs1451900043 1378 dbSNP
rs911351708 1388 dbSNP
rs979484830 1391 dbSNP
rs931685802 1399 dbSNP
rs192110497 1417 dbSNP
rs1373070159 1418 dbSNP
rs1485755637 1422 dbSNP
rs1266464931 1423 dbSNP
rs1394892905 1423 dbSNP
rs1307096299 1426 dbSNP
rs966791712 1429 dbSNP
rs1236508963 1433 dbSNP
rs1308257097 1436 dbSNP
rs913056847 1438 dbSNP
rs988619436 1439 dbSNP
rs73782717 1443 dbSNP
rs989140430 1448 dbSNP
rs956400014 1451 dbSNP
rs1320489517 1457 dbSNP
rs1482904323 1461 dbSNP
rs1035615370 1470 dbSNP
rs980142590 1472 dbSNP
rs1030908063 1474 dbSNP
rs1252771173 1476 dbSNP
rs781672820 1481 dbSNP
rs1178329777 1496 dbSNP
rs969746534 1497 dbSNP
rs1219358745 1498 dbSNP
rs1455890072 1511 dbSNP
rs541242908 1521 dbSNP
rs1015959487 1524 dbSNP
rs1296597244 1525 dbSNP
rs1462959687 1531 dbSNP
rs57806423 1542 dbSNP
rs564977180 1543 dbSNP
rs886202488 1544 dbSNP
rs1026459510 1553 dbSNP
rs1371309807 1562 dbSNP
rs888494319 1572 dbSNP
rs997695157 1573 dbSNP
rs902057355 1576 dbSNP
rs1311475159 1585 dbSNP
rs188854122 1586 dbSNP
rs1041268654 1587 dbSNP
rs550591569 1589 dbSNP
rs576103209 1590 dbSNP
rs890047686 1599 dbSNP
rs1192084590 1608 dbSNP
rs1190384447 1610 dbSNP
rs943659490 1613 dbSNP
rs1429627805 1619 dbSNP
rs1173216478 1623 dbSNP
rs1374271527 1638 dbSNP
rs1463563903 1641 dbSNP
rs903846804 1646 dbSNP
rs1394680582 1658 dbSNP
rs947614752 1659 dbSNP
rs439605 1662 dbSNP
rs1323627942 1666 dbSNP
rs556233313 1674 dbSNP
rs1382679578 1678 dbSNP
rs34997199 1680 dbSNP
rs747731262 1680 dbSNP
rs989254468 1685 dbSNP
rs1305715041 1688 dbSNP
rs1043737505 1689 dbSNP
rs923575864 1697 dbSNP
rs945436765 1701 dbSNP
rs914005952 1702 dbSNP
rs143372344 1705 dbSNP
rs781465672 1709 dbSNP
rs1188682911 1710 dbSNP
rs1260213019 1711 dbSNP
rs1477784796 1717 dbSNP
rs1192231677 1718 dbSNP
rs1418020497 1719 dbSNP
rs1462685992 1739 dbSNP
rs1162308174 1745 dbSNP
rs1349066946 1759 dbSNP
rs991051949 1760 dbSNP
rs1290440591 1763 dbSNP
rs779742366 1769 dbSNP
rs952614679 1779 dbSNP
rs1399334111 1790 dbSNP
rs1293982385 1794 dbSNP
rs938537908 1798 dbSNP
rs1199754808 1821 dbSNP
rs1289366967 1822 dbSNP
rs1027008123 1823 dbSNP
rs994240755 1825 dbSNP
rs575210622 1839 dbSNP
rs1320605149 1844 dbSNP
rs928493233 1854 dbSNP
rs373804324 1855 dbSNP
rs554839322 1877 dbSNP
rs75012504 1878 dbSNP
rs1240573523 1885 dbSNP
rs1015908463 1887 dbSNP
rs1303615553 1889 dbSNP
rs1475930164 1897 dbSNP
rs984473988 1901 dbSNP
rs1388330265 1913 dbSNP
rs1412567100 1918 dbSNP
rs1419303293 1928 dbSNP
rs950406269 1937 dbSNP
rs1026074774 1940 dbSNP
rs1418990327 1954 dbSNP
rs1313463755 1967 dbSNP
rs997706128 1971 dbSNP
rs1445862384 1974 dbSNP
rs1283680601 1975 dbSNP
rs1374256622 1977 dbSNP
rs566178380 1977 dbSNP
rs111887051 1982 dbSNP
rs1050051792 1984 dbSNP
rs111635867 1994 dbSNP
rs1212195489 1998 dbSNP
rs1402369903 2005 dbSNP
rs1165698490 2009 dbSNP
rs544955218 2010 dbSNP
rs893340259 2015 dbSNP
rs1474765239 2019 dbSNP
rs1018214577 2021 dbSNP
rs1377871341 2025 dbSNP
rs1178621125 2028 dbSNP
rs538795396 2033 dbSNP
rs1378231524 2038 dbSNP
rs35507183 2038 dbSNP
rs569707483 2049 dbSNP
rs1174063599 2053 dbSNP
rs1007798656 2056 dbSNP
rs185194740 2060 dbSNP
rs1452979619 2061 dbSNP
rs1252826876 2065 dbSNP
rs1355254746 2086 dbSNP
rs1043686028 2087 dbSNP
rs150525787 2091 dbSNP
rs1376465670 2108 dbSNP
rs1459509545 2109 dbSNP
rs1235425834 2115 dbSNP
rs949113865 2119 dbSNP
rs1343415139 2121 dbSNP
rs1219213508 2125 dbSNP
rs916480745 2125 dbSNP
rs1277259797 2126 dbSNP
rs945382563 2129 dbSNP
rs1206043832 2139 dbSNP
rs78821571 2140 dbSNP
rs529891325 2141 dbSNP
rs1193966926 2145 dbSNP
rs919731457 2146 dbSNP
rs1476998724 2149 dbSNP
rs1171964868 2154 dbSNP
rs1345760326 2164 dbSNP
rs1056546253 2172 dbSNP
rs1411682870 2183 dbSNP
rs1168660696 2193 dbSNP
rs370351399 2201 dbSNP
rs1231268611 2208 dbSNP
rs1019691588 2209 dbSNP
rs1329776059 2212 dbSNP
rs17474216 2226 dbSNP
rs1302495349 2228 dbSNP
rs980355394 2235 dbSNP
rs1379048977 2243 dbSNP
rs1326719797 2245 dbSNP
rs1028982231 2250 dbSNP
rs571885745 2253 dbSNP
rs1214008319 2258 dbSNP
rs1011804692 2269 dbSNP
rs1408864182 2282 dbSNP
rs375149118 2285 dbSNP
rs36098512 2289 dbSNP
rs1402220894 2292 dbSNP
rs948641105 2307 dbSNP
rs1476352015 2308 dbSNP
rs1191518625 2312 dbSNP
rs1423076664 2317 dbSNP
rs11550719 2324 dbSNP
rs1432549499 2333 dbSNP
rs1053236538 2350 dbSNP
rs999029362 2369 dbSNP
rs1319399217 2374 dbSNP
rs547409153 2384 dbSNP
rs1441879932 2386 dbSNP
rs984420368 2390 dbSNP
rs1181636376 2395 dbSNP
rs1339326581 2400 dbSNP
rs902254245 2400 dbSNP
rs1233497788 2407 dbSNP
rs1285539601 2408 dbSNP
rs1046184699 2420 dbSNP
rs762567080 2430 dbSNP
rs1208948266 2443 dbSNP
rs950353042 2468 dbSNP
rs34109965 2469 dbSNP
rs139567495 2470 dbSNP
rs564978415 2472 dbSNP
rs545114214 2474 dbSNP
rs1262523912 2475 dbSNP
rs1208815710 2484 dbSNP
rs1475549412 2484 dbSNP
rs765001974 2485 dbSNP
rs916276390 2490 dbSNP
rs1159498119 2500 dbSNP
rs761556741 2507 dbSNP
rs1055211204 2512 dbSNP
rs1347484547 2521 dbSNP
rs1017744701 2525 dbSNP
rs919852130 2549 dbSNP
rs1240635849 2567 dbSNP
rs1376615476 2576 dbSNP
rs1008162055 2577 dbSNP
rs1414822617 2580 dbSNP
rs972532688 2581 dbSNP
rs939897996 2585 dbSNP
rs371023364 2601 dbSNP
rs1441459588 2612 dbSNP
rs562418808 2618 dbSNP
rs1335666646 2628 dbSNP
rs550468266 2631 dbSNP
rs542663601 2632 dbSNP
rs1485963157 2635 dbSNP
rs1202194572 2642 dbSNP
rs1374499511 2642 dbSNP
rs1254238013 2663 dbSNP
rs776572587 2672 dbSNP
rs865839295 2680 dbSNP
rs990556342 2684 dbSNP
rs1031960285 2695 dbSNP
rs957572885 2695 dbSNP
rs1158450298 2696 dbSNP
rs892465718 2696 dbSNP
rs999019552 2707 dbSNP
rs372832334 2714 dbSNP
rs1158344575 2716 dbSNP
rs1399513828 2720 dbSNP
rs555230276 2722 dbSNP
rs1329183145 2725 dbSNP
rs1025131191 2729 dbSNP
rs905293380 2751 dbSNP
rs1370674906 2753 dbSNP
rs894907161 2761 dbSNP
rs778252489 2766 dbSNP
rs1044198267 2769 dbSNP
rs114244032 2790 dbSNP
rs1240217517 2792 dbSNP
rs1456613536 2807 dbSNP
rs909077470 2819 dbSNP
rs1254078277 2828 dbSNP
rs192836769 2829 dbSNP
rs898416122 2831 dbSNP
rs558927151 2844 dbSNP
rs147369299 2848 dbSNP
rs929230422 2856 dbSNP
rs113775165 2865 dbSNP
rs549730560 2866 dbSNP
rs987058696 2870 dbSNP
rs932716185 2873 dbSNP
rs536229221 2880 dbSNP
rs1230959517 2882 dbSNP
rs1371512390 2890 dbSNP
rs1388424739 2891 dbSNP
rs1299046051 2898 dbSNP
rs1330480581 2901 dbSNP
rs976168761 2903 dbSNP
rs1260088546 2907 dbSNP
rs990140602 2915 dbSNP
rs532939462 2920 dbSNP
rs910298972 2924 dbSNP
rs1274160988 2931 dbSNP
rs1489698357 2944 dbSNP
rs1189862477 2946 dbSNP
rs1429647054 2946 dbSNP
rs1301754335 2978 dbSNP
rs986282901 2982 dbSNP
rs1463706747 2983 dbSNP
rs1401530530 2992 dbSNP
rs968180634 3000 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agggcccUUGA--GUA-GUCAGAgg 5'
                 || |  ||| || |:|  
Target 5' cacacauAAGUGCCAUACAUUUUau 3'
4 - 28
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51014.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agggcccUUGA--GUA-GUCAGAgg 5'
                 || |  ||| || |:|  
Target 5' cacacauAAGUGCCAUACAUUUUau 3'
4 - 28
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760597. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_C ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000456936.3 | 3UTR | UCUCACACAUAAGUGCCAUACAUUUUAUCCUCAUGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000456936.3 | 3UTR | UCUCACACAUAAGUGCCAUACAUUUUAUCCUCAUGGAUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-873-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081178 MIDN midnolin 2 4
MIRT109809 ZFX zinc finger protein, X-linked 2 4
MIRT242383 TMC5 transmembrane channel like 5 2 4
MIRT444003 METRN meteorin, glial cell differentiation regulator 2 4
MIRT444097 SEPHS1 selenophosphate synthetase 1 2 2
MIRT446158 RPL12 ribosomal protein L12 2 2
MIRT446859 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT447275 FZD5 frizzled class receptor 5 2 2
MIRT447391 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT448817 FKBP1A FK506 binding protein 1A 2 4
MIRT450582 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT451776 USP36 ubiquitin specific peptidase 36 2 2
MIRT457961 ABCC5 ATP binding cassette subfamily C member 5 2 4
MIRT458424 KLHL38 kelch like family member 38 2 4
MIRT461383 SLFN12L schlafen family member 12 like 2 2
MIRT467793 SLC2A14 solute carrier family 2 member 14 2 2
MIRT476517 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT480290 C7orf73 short transmembrane mitochondrial protein 1 2 4
MIRT482745 HES7 hes family bHLH transcription factor 7 2 10
MIRT483189 HIST1H2AH histone cluster 1 H2A family member h 2 6
MIRT486545 DCTN4 dynactin subunit 4 2 2
MIRT486581 ZNF619 zinc finger protein 619 2 2
MIRT492604 POLR3E RNA polymerase III subunit E 2 2
MIRT494130 DCAF7 DDB1 and CUL4 associated factor 7 2 6
MIRT496023 ZBED3 zinc finger BED-type containing 3 2 2
MIRT497121 NBEAL1 neurobeachin like 1 2 2
MIRT497400 TMEM245 transmembrane protein 245 2 2
MIRT501410 RANBP10 RAN binding protein 10 2 2
MIRT510947 PPTC7 PTC7 protein phosphatase homolog 2 6
MIRT512494 ARID2 AT-rich interaction domain 2 2 2
MIRT512595 ZNF783 zinc finger family member 783 2 2
MIRT512612 CNTN4 contactin 4 2 2
MIRT517808 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT520686 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT526179 HEPH hephaestin 2 2
MIRT532568 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT533979 TADA2A transcriptional adaptor 2A 2 2
MIRT538622 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT539703 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539806 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT540422 FAM83F family with sequence similarity 83 member F 2 2
MIRT540506 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540619 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT542423 ZNF331 zinc finger protein 331 2 2
MIRT542454 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT543383 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT544777 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT544923 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 2
MIRT549768 ZNF611 zinc finger protein 611 2 4
MIRT551242 COLEC10 collectin subfamily member 10 2 2
MIRT560474 ENSA endosulfine alpha 2 2
MIRT569738 GPR173 G protein-coupled receptor 173 2 2
MIRT571297 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 2 2
MIRT572345 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT573112 ERBB2IP erbb2 interacting protein 2 2
MIRT607744 ANGPT4 angiopoietin 4 2 2
MIRT607903 SPRYD4 SPRY domain containing 4 2 2
MIRT611744 SERPING1 serpin family G member 1 2 4
MIRT615101 BNC2 basonuclin 2 2 2
MIRT619124 CD40LG CD40 ligand 2 2
MIRT625572 ANKRD42 ankyrin repeat domain 42 2 2
MIRT629038 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633986 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635675 COX18 COX18, cytochrome c oxidase assembly factor 2 4
MIRT637471 DEFB105B defensin beta 105B 2 4
MIRT637503 DEFB105A defensin beta 105A 2 4
MIRT639735 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640730 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT645364 C9orf47 chromosome 9 open reading frame 47 2 2
MIRT647938 RNF152 ring finger protein 152 2 2
MIRT649400 SH2D4A SH2 domain containing 4A 2 2
MIRT656860 KIN Kin17 DNA and RNA binding protein 2 2
MIRT663470 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT663507 NKAPL NFKB activating protein like 2 4
MIRT667690 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT677403 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT678682 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT678789 NUPL2 nucleoporin like 2 2 2
MIRT680649 KIAA1456 KIAA1456 2 2
MIRT682450 MTX3 metaxin 3 2 2
MIRT682740 CA6 carbonic anhydrase 6 2 2
MIRT684421 TUFT1 tuftelin 1 2 2
MIRT690535 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT690595 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690771 PLA2G2C phospholipase A2 group IIC 2 2
MIRT692233 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693667 MXRA7 matrix remodeling associated 7 2 2
MIRT695551 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695870 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT696214 LYZ lysozyme 2 2
MIRT698368 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT700795 PHTF2 putative homeodomain transcription factor 2 2 2
MIRT701640 MYLK3 myosin light chain kinase 3 2 2
MIRT702989 HERPUD2 HERPUD family member 2 2 2
MIRT703627 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT703783 FAM102B family with sequence similarity 102 member B 2 2
MIRT704293 DDX19B DEAD-box helicase 19B 2 2
MIRT704828 CDC73 cell division cycle 73 2 2
MIRT705014 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT708480 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT710770 PHF7 PHD finger protein 7 2 2
MIRT718918 TRIM66 tripartite motif containing 66 2 2
MIRT720390 ZNF549 zinc finger protein 549 2 2
MIRT720593 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT723515 SIGLEC8 sialic acid binding Ig like lectin 8 2 2
MIRT724458 PRKX protein kinase, X-linked 2 2
MIRT737267 UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 3 0
MIRT737356 ZIC2 Zic family member 2 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-873 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-873 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-873 Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-873 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-873 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-873-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-873-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-873-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-873-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-873-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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