miRTarBase - #MIRT521966


—
pre-miRNA Information
pre-miRNA hsa-mir-4794   
Genomic Coordinates chr1: 64579847 - 64579923
Description Homo sapiens miR-4794 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4794
Sequence 9| UCUGGCUAUCUCACGAGACUGU |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1162954002 4 dbSNP
rs1349204197 5 dbSNP
rs1454714841 8 dbSNP
rs191156964 14 dbSNP
rs543526824 15 dbSNP
rs1284724491 19 dbSNP
rs945565778 19 dbSNP
Putative Targets

Gene Information
Gene Symbol PHAX   
Synonyms RNUXA
Description phosphorylated adaptor for RNA export
Transcript NM_032177   
Expression
Putative miRNA Targets on PHAX
3'UTR of PHAX
(miRNA target sites are highlighted)		 
>PHAX|NM_032177|3'UTR
   1 GTACATTTTCAACAGTTTGAGGACTAAGCCTTTCTAAAATAACATTGTAATAAACCATTTTTACTGAGATTGCAACGTTT
  81 TGCACTGATAAACATGAGAATCTGGAGGAAAGACAATTGTTTTCTTGTTTAAAATATGTGTGGAAAGGAATGCAATTGAT
 161 AGAACATTTAAAGATATATCTGACAAAATACTTAAGAGTATATAGCACAGGATTTAATTTCTCAATCTGTTGCATGTGCT
 241 AATTATGAGTATTACTAGTTGATAATCAGTTTTGTCTAGGTCATAACATACCATTTGTAAGTTTGTTTGCTTTTTCAGGT
 321 TTATCTTTGCAGTGAATTATGCTTTGCTTTAAAACATTCCGCTAAAATCATAATGGGACATATAAATTATTAAGCTGTTA
 401 GAAATGCATTCAAATTTGTTTTTTCTGTGTTCTAAGAACTCAGGCAATTTTAAGGATAAAAACTAACATTGGCCAGGCAC
 481 GGTGGCTCACGCCTGTAATCCCAACACTTTAGGAGACCAAGGCGGGCAGATCACTTGAGGTCAGAAGTTTGAGACCAGCC
 561 AGGCCAACATGGTGAAACTTCATCTCTACTAAAAATACAAAAACTAGCCAGGTGTGGTTCTCCATGCCTATAATCCCGGC
 641 TACTCGGGAGGCTGAGGCAGGAGAATCACCTGAACCCGGGAGGCAAAGGTTGCAGTGAGCTGAGATCGTACCACTGTACT
 721 CCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAATACAATTAAGAGGTGTATACTGATGATTCTTCC
 801 CACTCATTTGTTTGTCCAGAAGTAAATAAATGTCGGAAGTTTTCCAAGTAACTATTTGTTTTTTGGGGGGTTTTTTAGTT
 881 AGAGTCTTGATCTGTCACCCAGGCTGGAGTACAGTGGCAGGATCTCAGCTTACTGCAGCTTCCATCTCCCAGGTTCAAGC
 961 GATCATGTGCCTAAGCCTCCTGAGTAGCTGGGATCACAGGTGTGTACCACCACGCCCAGCTGATTTTTGTATTTTTAGTA
1041 AAGACTTTCGCCATGTTGTCCAGGCTGGTCTCGAACTCCTGGCCTAATGATCTGCCCACCTCTGCCTCCCAAAGTGCTGG
1121 GATCACAGGCATGAGCCACCGAACCCAGCCTTATTCTGCTTAAATTTAACGTGTTTTTTGACTTCTTAATTAACTTGGTC
1201 ATATACTAAATGTGATCTCCTGTGGATTACCACATGCATTAAAAAATTTTTCAAGCTGGGCCTAGTGGCGCACACCTGCA
1281 ATCCCAACACTTTGGGAGGCCAAGAGAGGAAGATTGCTTGAGCCCAGGAGTTTGAGACCAATCTAGGCAATGTAGTGAGA
1361 CCCTGTCTCTAATTTAAAAAAGAAAAAGAAAAAAACATTCCCAGTGGCAGCCTGCCTAAGACTGTCTTACCTTATGTTAA
1441 GGAAGTCAGGTATTTAAAATGTTACATATGCCGGCGCAGTGGCTCATGTGTGTAATCCCAGCACTCTGGGAGGCTGAGAC
1521 AGGTAGATCATTTGAGGTCAGGAGTTCAAAACCAACCTGGTCTACATGGTGAAACCCCATCTCAACTAAAAATACAAAAA
1601 ATACAAAAAATTAGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTGGAGGCGGGTGGATCACAAGG
1681 TCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATACAAAAATTAGCTGGGCGTGGTGG
1761 CGCATGCCTGTAGTCCCAACTACTAGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGC
1841 CGAGATCACGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCCTCTCAAAAAAAAAAAAAAAAATACAAAAAATTA
1921 GCCGGGCATTGTGGTGCATGCCTGTAATCTCAGCTATTTGGGAGGCCGAGGCAGGAGAATCACTTGAACCCAGGAGGCAG
2001 AGGTTGCAGTGAGTCGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTTTGTCTCAAAAATAATAATAG
2081 TAAAATGTTACATGTGCATGAAGTTTTAAATTACTCATTTTTATTAATGAAGAAAATAAGGTAGTTTAGACATTCCAAGA
2161 GTTAACTATAGTTTACAAAAATATATTAAGCAAAAATATGCTTGATATATTAAGCAGAAATGTTGTATATTAAGCAAAAA
2241 TGTAAAATTCAGCAATTATAAACTGTTCCTTACAGACAGTGTACTTGAAGTCTTTTGGTAGTTCTGAGAATGTGGTCATT
2321 GAAGTTGGATCTAAGAGGAAAGTGGTTATCGGTTGCTTTTTATTTATAAAGGATGCAAAAATAAAATTAGATTTTTGGCA
2401 GTCCTTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugucagagcacucuAUCGGUCu 5'
                        ||||||| 
Target 5' aaaaatacaaaaacTAGCCAGg 3'
 591 - 612 140.00 -10.10
2 
miRNA  3' ugUCAGAGCACUCUAUCGGUCu 5'
            || ||| |||| ||||::| 
Target 5' taAGCCTCCTGAG-TAGCTGGg 3'
 972 - 992 139.00 -17.40
3 
miRNA  3' ugUCAGAGCACUCU-AUCGGUCu 5'
            |||:   |||||  |||||| 
Target 5' gaAGTT---TGAGACCAGCCAGg 3'
 544 - 563 129.00 -16.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31605402 2 COSMIC
COSN30508180 39 COSMIC
COSN26585765 333 COSMIC
COSN26505532 475 COSMIC
COSN26506057 480 COSMIC
COSN31481496 492 COSMIC
COSN24912989 733 COSMIC
COSN19323843 768 COSMIC
COSN6861481 882 COSMIC
COSN5588053 898 COSMIC
COSN20622229 1015 COSMIC
COSN10044375 1043 COSMIC
COSN31962454 1171 COSMIC
COSN14867697 1263 COSMIC
COSN14706653 1741 COSMIC
COSN23778458 1776 COSMIC
COSN21171248 1850 COSMIC
COSN7862639 1917 COSMIC
COSN20371767 1968 COSMIC
COSN14738172 2230 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1185801264 5 dbSNP
rs572255573 6 dbSNP
rs1428949826 12 dbSNP
rs1169248977 13 dbSNP
rs748063352 16 dbSNP
rs1468610888 25 dbSNP
rs1371013229 27 dbSNP
rs371371221 29 dbSNP
rs1192435027 31 dbSNP
rs1173727393 36 dbSNP
rs772202628 37 dbSNP
rs369152491 41 dbSNP
rs201938664 43 dbSNP
rs372704366 47 dbSNP
rs377416587 51 dbSNP
rs1382045648 52 dbSNP
rs1166391079 55 dbSNP
rs1390968819 58 dbSNP
rs1374361669 60 dbSNP
rs986505289 69 dbSNP
rs913692160 74 dbSNP
rs945024105 77 dbSNP
rs183789423 78 dbSNP
rs1369625878 83 dbSNP
rs564176249 85 dbSNP
rs1418097945 87 dbSNP
rs1238438682 96 dbSNP
rs1331310030 99 dbSNP
rs1180242325 106 dbSNP
rs1467007917 107 dbSNP
rs925193697 110 dbSNP
rs1252278348 113 dbSNP
rs1017759411 117 dbSNP
rs553622473 123 dbSNP
rs1393451846 124 dbSNP
rs573448495 126 dbSNP
rs976358268 128 dbSNP
rs1321277761 137 dbSNP
rs1234147362 148 dbSNP
rs1311805302 156 dbSNP
rs1031035700 160 dbSNP
rs1370810841 163 dbSNP
rs1324624411 174 dbSNP
rs1388974903 175 dbSNP
rs781035517 181 dbSNP
rs1275120462 184 dbSNP
rs1316186794 188 dbSNP
rs1156262136 189 dbSNP
rs1197909221 189 dbSNP
rs956283328 189 dbSNP
rs1380505585 192 dbSNP
rs1233335061 194 dbSNP
rs543770340 200 dbSNP
rs949236252 204 dbSNP
rs914592066 224 dbSNP
rs968760518 226 dbSNP
rs561848594 235 dbSNP
rs760806341 237 dbSNP
rs1288422983 238 dbSNP
rs938549856 239 dbSNP
rs529144038 242 dbSNP
rs547274435 269 dbSNP
rs1275761431 279 dbSNP
rs1004203204 284 dbSNP
rs1056976640 291 dbSNP
rs918466386 293 dbSNP
rs1420798699 300 dbSNP
rs1318301493 301 dbSNP
rs929913621 310 dbSNP
rs1048021715 312 dbSNP
rs559585084 316 dbSNP
rs898724386 321 dbSNP
rs1432413711 324 dbSNP
rs1424072402 332 dbSNP
rs1006622918 341 dbSNP
rs1478917125 348 dbSNP
rs542421886 357 dbSNP
rs900661609 361 dbSNP
rs766376266 362 dbSNP
rs998057990 364 dbSNP
rs1485443688 365 dbSNP
rs1030500306 368 dbSNP
rs1202523190 369 dbSNP
rs956250521 371 dbSNP
rs1415593199 373 dbSNP
rs533100281 374 dbSNP
rs1338739680 384 dbSNP
rs551485401 387 dbSNP
rs569741793 392 dbSNP
rs986951983 401 dbSNP
rs1358196936 402 dbSNP
rs1334473865 406 dbSNP
rs1020646458 414 dbSNP
rs980203895 419 dbSNP
rs1169713195 421 dbSNP
rs34670575 425 dbSNP
rs966444935 431 dbSNP
rs777325748 432 dbSNP
rs1425729744 440 dbSNP
rs1185859248 445 dbSNP
rs979094809 448 dbSNP
rs927337728 449 dbSNP
rs924940973 451 dbSNP
rs1485901735 454 dbSNP
rs1212553377 460 dbSNP
rs937910422 466 dbSNP
rs1230913129 468 dbSNP
rs1271885631 468 dbSNP
rs1377901625 478 dbSNP
rs138175033 481 dbSNP
rs917881077 482 dbSNP
rs949182892 491 dbSNP
rs149552170 492 dbSNP
rs1138215 498 dbSNP
rs940118868 501 dbSNP
rs878897470 505 dbSNP
rs1048324519 511 dbSNP
rs879038407 512 dbSNP
rs909548826 517 dbSNP
rs1414536516 522 dbSNP
rs1165084009 524 dbSNP
rs1186527089 525 dbSNP
rs1038334914 528 dbSNP
rs1430798297 529 dbSNP
rs898481838 544 dbSNP
rs6595721 546 dbSNP
rs1251681406 553 dbSNP
rs781071267 567 dbSNP
rs1049947274 582 dbSNP
rs1282342497 583 dbSNP
rs1039379042 587 dbSNP
rs900879761 599 dbSNP
rs1138219 611 dbSNP
rs1229568850 611 dbSNP
rs751377099 616 dbSNP
rs1051902028 618 dbSNP
rs1447227873 619 dbSNP
rs1138220 620 dbSNP
rs572292276 625 dbSNP
rs1021096243 631 dbSNP
rs1138224 634 dbSNP
rs1350417684 636 dbSNP
rs1010472675 638 dbSNP
rs1399066143 639 dbSNP
rs1138227 640 dbSNP
rs1379909362 643 dbSNP
rs1021920178 645 dbSNP
rs1393596565 646 dbSNP
rs969006621 647 dbSNP
rs966391075 668 dbSNP
rs1300568618 671 dbSNP
rs1243842040 678 dbSNP
rs1348535122 682 dbSNP
rs7717726 683 dbSNP
rs557849671 684 dbSNP
rs576092118 687 dbSNP
rs368271091 695 dbSNP
rs992956247 697 dbSNP
rs1355418972 706 dbSNP
rs990525718 708 dbSNP
rs1368171747 709 dbSNP
rs951257845 711 dbSNP
rs889088466 714 dbSNP
rs917828801 715 dbSNP
rs1243314687 719 dbSNP
rs983994084 732 dbSNP
rs1298903359 733 dbSNP
rs909768367 737 dbSNP
rs545279563 744 dbSNP
rs1175761875 746 dbSNP
rs942635498 747 dbSNP
rs1190146573 749 dbSNP
rs1394963780 751 dbSNP
rs1427850579 751 dbSNP
rs1477783239 752 dbSNP
rs34986351 753 dbSNP
rs35444825 753 dbSNP
rs59173418 753 dbSNP
rs771458236 753 dbSNP
rs867799693 753 dbSNP
rs1455086065 754 dbSNP
rs1175853648 755 dbSNP
rs970646385 757 dbSNP
rs983260620 758 dbSNP
rs907712877 760 dbSNP
rs922303655 768 dbSNP
rs940087217 769 dbSNP
rs1278878725 771 dbSNP
rs933720533 771 dbSNP
rs1052205452 773 dbSNP
rs1038858435 778 dbSNP
rs920046067 779 dbSNP
rs1347021707 787 dbSNP
rs1361195911 789 dbSNP
rs932630012 797 dbSNP
rs563090490 800 dbSNP
rs1325345286 807 dbSNP
rs115394203 811 dbSNP
rs1478543543 819 dbSNP
rs562066488 824 dbSNP
rs1236425868 827 dbSNP
rs867272599 828 dbSNP
rs904751937 835 dbSNP
rs1306792443 836 dbSNP
rs1257494942 852 dbSNP
rs891353648 855 dbSNP
rs1349773342 859 dbSNP
rs1034751855 860 dbSNP
rs1008434225 865 dbSNP
rs1338843906 865 dbSNP
rs1042497680 868 dbSNP
rs374830306 869 dbSNP
rs951472756 871 dbSNP
rs1214362952 872 dbSNP
rs1446561335 875 dbSNP
rs749629853 881 dbSNP
rs1173522976 894 dbSNP
rs1016741475 895 dbSNP
rs964272936 898 dbSNP
rs192839479 899 dbSNP
rs1163488049 903 dbSNP
rs867347534 913 dbSNP
rs34118500 921 dbSNP
rs1196124298 923 dbSNP
rs1138235 933 dbSNP
rs1257890245 934 dbSNP
rs1236701018 936 dbSNP
rs922241113 937 dbSNP
rs1469994422 940 dbSNP
rs1200384238 943 dbSNP
rs1354177683 946 dbSNP
rs1264886404 951 dbSNP
rs58473806 952 dbSNP
rs80282480 959 dbSNP
rs541308526 961 dbSNP
rs1410393142 962 dbSNP
rs1403819786 965 dbSNP
rs1446489107 966 dbSNP
rs987815134 967 dbSNP
rs559620128 969 dbSNP
rs913616533 977 dbSNP
rs1032489623 979 dbSNP
rs959183098 983 dbSNP
rs904718372 986 dbSNP
rs1458016130 988 dbSNP
rs1369827893 991 dbSNP
rs1138236 999 dbSNP
rs780889318 1001 dbSNP
rs750045336 1014 dbSNP
rs1395386586 1015 dbSNP
rs1449752541 1016 dbSNP
rs937572030 1017 dbSNP
rs1210484560 1019 dbSNP
rs1056090606 1023 dbSNP
rs895797771 1026 dbSNP
rs183766539 1032 dbSNP
rs1354718763 1041 dbSNP
rs1047053014 1045 dbSNP
rs1331013625 1046 dbSNP
rs887169288 1046 dbSNP
rs1335120593 1048 dbSNP
rs551568836 1049 dbSNP
rs563382681 1050 dbSNP
rs56284156 1051 dbSNP
rs1160202187 1052 dbSNP
rs963932629 1054 dbSNP
rs1376984037 1056 dbSNP
rs187001896 1062 dbSNP
rs371810380 1073 dbSNP
rs919976105 1074 dbSNP
rs1216024491 1078 dbSNP
rs1488722098 1087 dbSNP
rs932768653 1091 dbSNP
rs1199083772 1093 dbSNP
rs567247536 1098 dbSNP
rs1138245 1099 dbSNP
rs1256960124 1101 dbSNP
rs1235991884 1108 dbSNP
rs191804124 1112 dbSNP
rs1339120880 1113 dbSNP
rs141833250 1115 dbSNP
rs375717627 1122 dbSNP
rs912569466 1125 dbSNP
rs1340721086 1133 dbSNP
rs1319944626 1134 dbSNP
rs944074582 1141 dbSNP
rs146251147 1142 dbSNP
rs1421441673 1144 dbSNP
rs1193013657 1146 dbSNP
rs902790466 1151 dbSNP
rs1234976226 1171 dbSNP
rs936824578 1172 dbSNP
rs1442072486 1173 dbSNP
rs1053972642 1190 dbSNP
rs1279719704 1195 dbSNP
rs1202580523 1198 dbSNP
rs1316555896 1204 dbSNP
rs894864630 1205 dbSNP
rs539658698 1216 dbSNP
rs1318080049 1217 dbSNP
rs1012006550 1225 dbSNP
rs1024613530 1226 dbSNP
rs1445297721 1227 dbSNP
rs1463032835 1236 dbSNP
rs937560087 1237 dbSNP
rs1398015048 1242 dbSNP
rs1056373116 1247 dbSNP
rs1169970542 1248 dbSNP
rs1466083313 1253 dbSNP
rs917467711 1257 dbSNP
rs1161554611 1262 dbSNP
rs1142104 1263 dbSNP
rs1142092 1265 dbSNP
rs770517963 1270 dbSNP
rs78031966 1271 dbSNP
rs3201986 1275 dbSNP
rs1413751352 1280 dbSNP
rs1138207 1281 dbSNP
rs963339353 1282 dbSNP
rs374694375 1291 dbSNP
rs1357001518 1294 dbSNP
rs1274451101 1299 dbSNP
rs769124437 1303 dbSNP
rs11452884 1305 dbSNP
rs397807159 1305 dbSNP
rs996654610 1305 dbSNP
rs1247899213 1313 dbSNP
rs1339236865 1316 dbSNP
rs779449727 1316 dbSNP
rs867558292 1318 dbSNP
rs138020067 1321 dbSNP
rs1356236216 1325 dbSNP
rs954234437 1327 dbSNP
rs184310158 1331 dbSNP
rs912687289 1335 dbSNP
rs1165778449 1342 dbSNP
rs1438069967 1361 dbSNP
rs541363268 1362 dbSNP
rs559704845 1363 dbSNP
rs1191522960 1368 dbSNP
rs1372632595 1369 dbSNP
rs1475695578 1370 dbSNP
rs944025489 1376 dbSNP
rs978094932 1377 dbSNP
rs9765700 1382 dbSNP
rs1169618276 1383 dbSNP
rs1399763674 1385 dbSNP
rs1218728132 1389 dbSNP
rs1433817034 1389 dbSNP
rs9764230 1389 dbSNP
rs1450612423 1391 dbSNP
rs866477153 1414 dbSNP
rs748499561 1417 dbSNP
rs1224185099 1420 dbSNP
rs936958362 1423 dbSNP
rs1376829298 1425 dbSNP
rs772385679 1426 dbSNP
rs141703007 1427 dbSNP
rs527999139 1429 dbSNP
rs917418283 1432 dbSNP
rs1350474128 1433 dbSNP
rs1305044817 1436 dbSNP
rs1418042837 1437 dbSNP
rs1360177397 1443 dbSNP
rs1159607820 1445 dbSNP
rs1421310490 1449 dbSNP
rs188266834 1451 dbSNP
rs1046160336 1464 dbSNP
rs1423681845 1467 dbSNP
rs906309285 1473 dbSNP
rs369006323 1474 dbSNP
rs1268921133 1475 dbSNP
rs1228756699 1476 dbSNP
rs563470873 1477 dbSNP
rs773419259 1480 dbSNP
rs1284923559 1481 dbSNP
rs1346379744 1486 dbSNP
rs1318572759 1487 dbSNP
rs1014609992 1488 dbSNP
rs760823633 1489 dbSNP
rs1218513257 1491 dbSNP
rs994770356 1497 dbSNP
rs771000623 1502 dbSNP
rs1047323845 1512 dbSNP
rs1398283107 1523 dbSNP
rs1340107228 1524 dbSNP
rs1029357698 1526 dbSNP
rs1455546664 1531 dbSNP
rs941397800 1543 dbSNP
rs1175826753 1547 dbSNP
rs1415510179 1548 dbSNP
rs1038780306 1549 dbSNP
rs1200928717 1550 dbSNP
rs953210444 1566 dbSNP
rs987290891 1567 dbSNP
rs1186677419 1568 dbSNP
rs1019645623 1569 dbSNP
rs965449408 1570 dbSNP
rs1486768726 1581 dbSNP
rs530563571 1582 dbSNP
rs923967638 1586 dbSNP
rs537303561 1588 dbSNP
rs1447702682 1595 dbSNP
rs1195451726 1596 dbSNP
rs1317302948 1599 dbSNP
rs1050934742 1602 dbSNP
rs1384092348 1605 dbSNP
rs1375823381 1606 dbSNP
rs759328183 1611 dbSNP
rs542695128 1617 dbSNP
rs560751652 1618 dbSNP
rs1449274728 1621 dbSNP
rs916857452 1622 dbSNP
rs1396721061 1623 dbSNP
rs562773034 1623 dbSNP
rs528113327 1624 dbSNP
rs1170557509 1625 dbSNP
rs948188145 1626 dbSNP
rs1429883486 1627 dbSNP
rs1411246300 1629 dbSNP
rs1020919952 1631 dbSNP
rs999019059 1634 dbSNP
rs764109285 1636 dbSNP
rs1196620472 1637 dbSNP
rs1457282060 1638 dbSNP
rs751610451 1643 dbSNP
rs1287968219 1644 dbSNP
rs903781657 1645 dbSNP
rs1385025651 1655 dbSNP
rs927674593 1656 dbSNP
rs1312344020 1665 dbSNP
rs546152175 1666 dbSNP
rs150524691 1667 dbSNP
rs1036377000 1670 dbSNP
rs1329742926 1670 dbSNP
rs1446632715 1673 dbSNP
rs1401701939 1677 dbSNP
rs1298220142 1681 dbSNP
rs896087033 1682 dbSNP
rs201868659 1683 dbSNP
rs959122914 1686 dbSNP
rs1036401639 1690 dbSNP
rs761174589 1692 dbSNP
rs768993158 1700 dbSNP
rs1050348493 1701 dbSNP
rs1416948913 1709 dbSNP
rs1251221030 1724 dbSNP
rs533397270 1726 dbSNP
rs551603126 1730 dbSNP
rs1018754067 1734 dbSNP
rs1223428864 1737 dbSNP
rs767226347 1739 dbSNP
rs1307479013 1744 dbSNP
rs999623974 1745 dbSNP
rs1260309721 1746 dbSNP
rs1031539661 1749 dbSNP
rs1351714978 1750 dbSNP
rs958062767 1754 dbSNP
rs1336858039 1755 dbSNP
rs1309869761 1758 dbSNP
rs1385600016 1759 dbSNP
rs989915499 1762 dbSNP
rs916804548 1763 dbSNP
rs192768354 1771 dbSNP
rs1367099680 1779 dbSNP
rs1156593405 1785 dbSNP
rs537182771 1797 dbSNP
rs555808371 1806 dbSNP
rs982236802 1813 dbSNP
rs1364303495 1816 dbSNP
rs1254615057 1818 dbSNP
rs908763408 1819 dbSNP
rs1431378521 1825 dbSNP
rs1266698784 1833 dbSNP
rs1158134143 1841 dbSNP
rs567625773 1842 dbSNP
rs1284203872 1843 dbSNP
rs535027178 1844 dbSNP
rs1160937357 1846 dbSNP
rs1393181660 1850 dbSNP
rs1461348320 1851 dbSNP
rs1231649731 1854 dbSNP
rs1331069245 1855 dbSNP
rs13173662 1856 dbSNP
rs1373854068 1857 dbSNP
rs1405084860 1859 dbSNP
rs1346995323 1862 dbSNP
rs1296030753 1865 dbSNP
rs1389987900 1868 dbSNP
rs185492519 1871 dbSNP
rs1336522458 1872 dbSNP
rs1160107151 1874 dbSNP
rs190695425 1879 dbSNP
rs1271346536 1880 dbSNP
rs1481498714 1885 dbSNP
rs1261131027 1886 dbSNP
rs1334313593 1887 dbSNP
rs1214225852 1888 dbSNP
rs1274921460 1889 dbSNP
rs1423559020 1891 dbSNP
rs1170103324 1892 dbSNP
rs1337238381 1892 dbSNP
rs1344902086 1892 dbSNP
rs1345749862 1892 dbSNP
rs1405247199 1892 dbSNP
rs1421513437 1892 dbSNP
rs1470924005 1892 dbSNP
rs71573966 1892 dbSNP
rs1479619334 1893 dbSNP
rs1176352452 1902 dbSNP
rs1375053204 1906 dbSNP
rs1251046250 1907 dbSNP
rs1420498621 1909 dbSNP
rs1022646148 1910 dbSNP
rs1206055582 1912 dbSNP
rs1370683297 1912 dbSNP
rs1416492265 1914 dbSNP
rs1461461481 1919 dbSNP
rs1166504252 1920 dbSNP
rs1339632342 1923 dbSNP
rs556912980 1924 dbSNP
rs575377204 1925 dbSNP
rs1242168673 1926 dbSNP
rs1051658480 1927 dbSNP
rs1315499440 1935 dbSNP
rs1397747837 1937 dbSNP
rs1393329739 1939 dbSNP
rs1398077767 1942 dbSNP
rs1036108619 1945 dbSNP
rs1410665717 1954 dbSNP
rs1398907703 1958 dbSNP
rs1291718391 1959 dbSNP
rs1161607498 1960 dbSNP
rs1355087841 1960 dbSNP
rs1233934588 1961 dbSNP
rs920360580 1963 dbSNP
rs945159031 1964 dbSNP
rs201504339 1968 dbSNP
rs1042249225 1969 dbSNP
rs1238152392 1977 dbSNP
rs1050529214 1984 dbSNP
rs567157443 1986 dbSNP
rs1033335441 1989 dbSNP
rs1008773987 1991 dbSNP
rs542431523 1994 dbSNP
rs1208490624 1999 dbSNP
rs1256313077 2000 dbSNP
rs903017514 2008 dbSNP
rs1475331738 2014 dbSNP
rs1189379633 2015 dbSNP
rs1416847614 2016 dbSNP
rs999135765 2017 dbSNP
rs1442848422 2018 dbSNP
rs1337549259 2019 dbSNP
rs1321690616 2021 dbSNP
rs753327196 2023 dbSNP
rs1373974805 2024 dbSNP
rs1366469286 2025 dbSNP
rs1165836806 2026 dbSNP
rs1418317804 2033 dbSNP
rs1407887765 2034 dbSNP
rs958375513 2040 dbSNP
rs1010882839 2043 dbSNP
rs1471455225 2047 dbSNP
rs1234075780 2051 dbSNP
rs1431965387 2054 dbSNP
rs1311478713 2058 dbSNP
rs1196705632 2059 dbSNP
rs1490078782 2059 dbSNP
rs1024712520 2064 dbSNP
rs950477657 2067 dbSNP
rs754544420 2068 dbSNP
rs1351155096 2069 dbSNP
rs1283306087 2070 dbSNP
rs982891210 2076 dbSNP
rs1352784557 2088 dbSNP
rs1273119001 2093 dbSNP
rs1023643654 2095 dbSNP
rs1415686647 2095 dbSNP
rs561056114 2104 dbSNP
rs982351021 2110 dbSNP
rs1360005124 2121 dbSNP
rs1344926127 2129 dbSNP
rs1160328112 2138 dbSNP
rs1213894229 2138 dbSNP
rs1015729008 2141 dbSNP
rs1296143319 2142 dbSNP
rs1309216325 2148 dbSNP
rs181563506 2149 dbSNP
rs1279361648 2150 dbSNP
rs1173620755 2154 dbSNP
rs1479864387 2155 dbSNP
rs1485788720 2162 dbSNP
rs1268987259 2168 dbSNP
rs113917311 2169 dbSNP
rs974755262 2170 dbSNP
rs539843880 2172 dbSNP
rs1241260166 2183 dbSNP
rs1239834232 2197 dbSNP
rs921274687 2199 dbSNP
rs972672752 2202 dbSNP
rs920330563 2209 dbSNP
rs1324286730 2212 dbSNP
rs1285299327 2220 dbSNP
rs561132688 2221 dbSNP
rs57200165 2221 dbSNP
rs1289796726 2223 dbSNP
rs985723383 2226 dbSNP
rs147330908 2230 dbSNP
rs1336576181 2236 dbSNP
rs1470598925 2240 dbSNP
rs1420797775 2244 dbSNP
rs1451886990 2250 dbSNP
rs1429313937 2254 dbSNP
rs1178001785 2256 dbSNP
rs1172148406 2264 dbSNP
rs551641532 2264 dbSNP
rs1186872435 2272 dbSNP
rs1486762624 2278 dbSNP
rs925135476 2279 dbSNP
rs1231995544 2281 dbSNP
rs1435537842 2285 dbSNP
rs1265049573 2286 dbSNP
rs570183248 2291 dbSNP
rs762102465 2293 dbSNP
rs1343671527 2296 dbSNP
rs1040266878 2308 dbSNP
rs879174147 2311 dbSNP
rs903132250 2312 dbSNP
rs1216557361 2317 dbSNP
rs1377360287 2319 dbSNP
rs936580766 2321 dbSNP
rs1453947821 2326 dbSNP
rs1055490173 2332 dbSNP
rs1338099534 2341 dbSNP
rs1367197358 2345 dbSNP
rs1460075519 2346 dbSNP
rs894801835 2351 dbSNP
rs1438701011 2352 dbSNP
rs1013635447 2357 dbSNP
rs1046047154 2359 dbSNP
rs886162256 2362 dbSNP
rs531155703 2367 dbSNP
rs759522113 2373 dbSNP
rs778027798 2374 dbSNP
rs934481939 2375 dbSNP
rs1244952942 2378 dbSNP
rs1302411833 2380 dbSNP
rs1480310085 2390 dbSNP
rs1348378461 2404 dbSNP
rs1054713310 2406 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 51808.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugucagagcacucuAUCGGUCu 5'
                        ||||||| 
Target 5' aaaaauacaaaaacUAGCCAGg 3'
 		17 - 38
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_032177 | 3UTR | AAAAUACAAAAACUAGCCAGGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_032177 | 3UTR | AAAAUACAAAAACUAGCCAGGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_032177 | 3UTR | AAAAACUAGCCAGGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_032177 | 3UTR | AAAACUAGCCAGGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_032177 | 3UTR | AAAACUAGCCAGGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_032177 | 3UTR | UAAAAAUACAAAAACUAGCCAGGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000297540.4 | 3UTR | AAACUUCAUCUCUACUAAAAAUACAAAAACUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000297540.4 | 3UTR | AAACUUCAUCUCUACUAAAAAUACAAAAACUAGCCAGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
110 hsa-miR-4794 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059821 EFNA1 ephrin A1 2 2
MIRT203153 BACH1 BTB domain and CNC homolog 1 2 2
MIRT334253 SERPINH1 serpin family H member 1 2 2
MIRT475239 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 2
MIRT482467 ADAR adenosine deaminase, RNA specific 2 4
MIRT482632 AAR2 AAR2 splicing factor homolog 2 2
MIRT511147 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT514416 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT514842 LYRM7 LYR motif containing 7 2 4
MIRT515343 CXorf36 chromosome X open reading frame 36 2 2
MIRT515806 ALOX5AP arachidonate 5-lipoxygenase activating protein 2 2
MIRT516396 NPR1 natriuretic peptide receptor 1 2 4
MIRT516622 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT516959 SLC35F6 solute carrier family 35 member F6 2 2
MIRT517154 VHLL VHL like 2 2
MIRT517268 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT517660 TRIM72 tripartite motif containing 72 2 4
MIRT518026 ABHD15 abhydrolase domain containing 15 2 2
MIRT518116 RNMTL1 mitochondrial rRNA methyltransferase 3 2 4
MIRT518143 C15orf40 chromosome 15 open reading frame 40 2 4
MIRT518232 C7orf55 formation of mitochondrial complex V assembly factor 1 homolog 2 2
MIRT518517 CASP10 caspase 10 2 2
MIRT518646 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT519287 SPCS1 signal peptidase complex subunit 1 2 2
MIRT519487 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT520917 ST13 ST13, Hsp70 interacting protein 2 2
MIRT520928 SSBP2 single stranded DNA binding protein 2 2 2
MIRT521966 PHAX phosphorylated adaptor for RNA export 2 4
MIRT522244 NPFFR1 neuropeptide FF receptor 1 2 2
MIRT523355 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT525181 ZNF468 zinc finger protein 468 2 2
MIRT528221 METTL8 methyltransferase like 8 2 2
MIRT528437 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT531504 NONO non-POU domain containing octamer binding 2 2
MIRT532597 SIX4 SIX homeobox 4 2 2
MIRT532761 LDHD lactate dehydrogenase D 2 2
MIRT536012 MECP2 methyl-CpG binding protein 2 2 2
MIRT536262 LPGAT1 lysophosphatidylglycerol acyltransferase 1 2 2
MIRT547555 LRRC58 leucine rich repeat containing 58 2 2
MIRT554691 RNF2 ring finger protein 2 2 2
MIRT557250 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT563339 RPLP0 ribosomal protein lateral stalk subunit P0 2 2
MIRT573179 P2RX3 purinergic receptor P2X 3 2 2
MIRT574386 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT574638 LPCAT3 lysophosphatidylcholine acyltransferase 3 2 2
MIRT609143 ZNF610 zinc finger protein 610 2 4
MIRT609651 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT610846 ZNF44 zinc finger protein 44 2 2
MIRT612345 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT613002 GATA6 GATA binding protein 6 2 2
MIRT614095 PDE4C phosphodiesterase 4C 2 2
MIRT615512 AGTRAP angiotensin II receptor associated protein 2 2
MIRT621281 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT623367 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT624508 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT632570 POLQ DNA polymerase theta 2 2
MIRT634829 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT639452 CTNNBL1 catenin beta like 1 2 2
MIRT642097 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT648408 TRMT10B tRNA methyltransferase 10B 2 2
MIRT653936 SERPINC1 serpin family C member 1 2 2
MIRT658226 FBXL16 F-box and leucine rich repeat protein 16 2 2
MIRT662599 MAGEB4 MAGE family member B4 2 2
MIRT663190 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT664623 DNPEP aspartyl aminopeptidase 2 2
MIRT671879 ZNF429 zinc finger protein 429 2 2
MIRT679033 ZNF419 zinc finger protein 419 2 2
MIRT684892 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT685153 DTWD2 DTW domain containing 2 2 2
MIRT686415 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT687021 RNF24 ring finger protein 24 2 2
MIRT688369 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT689600 FAM96A family with sequence similarity 96 member A 2 2
MIRT690375 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690484 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT691458 C21orf58 chromosome 21 open reading frame 58 2 2
MIRT691861 ZNF552 zinc finger protein 552 2 2
MIRT692035 ARSK arylsulfatase family member K 2 2
MIRT693951 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT694058 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT694469 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT695028 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695093 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 2
MIRT696624 WDR77 WD repeat domain 77 2 2
MIRT697446 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT697871 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT700637 PQLC2 PQ loop repeat containing 2 2 2
MIRT701192 OTUD3 OTU deubiquitinase 3 2 2
MIRT701332 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT702199 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702891 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT704389 CTSS cathepsin S 2 2
MIRT704922 CCDC36 coiled-coil domain containing 36 2 2
MIRT705770 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT705797 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT705874 AEN apoptosis enhancing nuclease 2 2
MIRT707372 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT707426 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710293 SPN sialophorin 2 2
MIRT710744 ZNF71 zinc finger protein 71 2 2
MIRT713183 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 1
MIRT715030 RANBP6 RAN binding protein 6 2 2
MIRT715829 ZNF598 zinc finger protein 598 2 2
MIRT720340 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT722662 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT722683 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT723908 PEX11A peroxisomal biogenesis factor 11 alpha 2 2
MIRT724044 SMIM14 small integral membrane protein 14 2 2
MIRT725241 PDE1B phosphodiesterase 1B 2 2
MIRT725307 NLRC5 NLR family CARD domain containing 5 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4794 Doxorubicin 31703 NSC123127 approved resistant High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-miR-4794 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4794 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4794 Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR4)

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