Gene Symbol |
MMP16
|
Synonyms |
C8orf57, MMP-X2, MT-MMP2, MT-MMP3, MT3-MMP |
Description |
matrix metallopeptidase 16 |
Transcript |
NM_005941
|
Expression |
|
Putative miRNA Targets on MMP16 |
|
3'UTR of MMP16 (miRNA target sites are highlighted) |
>MMP16|NM_005941|3'UTR
1 TGTAGGGTTTTTTCTTCTTTCTTTCTTTTGCAGGAGTTTGTGGTAACTTGAGATTCAAGACAAGAGCTGTTATGCTGTTT
81 CCTAGCTAGGAGCAGGCTTGTGGCAGCCTGATTCGGGGCTGACCTTTCAAACCCAGAGGGTTGCTGGTCCTGCACATGAG
161 TGGAAATACACTCATGGGGAAGCTTCCATGATGCACAGTATCTGCTGTTCTTCAGTCCTTTGTCTTTCTTTGTCATTCAG
241 TTCTAGGCCTTTCCTCTGCACGCTCAATGCCCAGTAAAATTTCAGGATTAACTAAAGAAGAGGAGAAAAAGAAGAAAAGA
321 TTCTTCTTAAAAGTTTCTAATGTTATTTTCCTTCTGAAGTCTGAGCCCATTTCTGGGGGGAGAAAAAAAAAGCAAATCAG
401 AAAACCCACGGTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTGCTTTAAAACAAAGGGAAAAAAGAGTTTAAAC
481 AAAAAACCCACAATTGAACTTCCAGGAAAGTGTGAAGACCCAAAACAGCTTTGTCTCCAAAGAAGATAGCTCTCTGACTG
561 CTTTGGATAGTCTCCTACGCACCATTTTGTCAGGTGGGAGATTTGGAATACACATGCAGGACGTTAGACTGTTGGGACAG
641 CCATTTTCCAACAACCAAGGGGCCAAAATATCTGCAATATAGTAACAGCCTTAATAATACATCCATTTTTCGTTTTATAC
721 AGCTGTTCTCAGCTATGTCCTCAGTGTTTCATCGCATTTATATTCATAGCTATTTTCAAACACGACCTTTTAATTGTTTT
801 TGAAGTATTTCTAAACCCCTTCTTTCCACCTTACTCCTCCATCATTGTGATAATCTTCCCAAGTTGTATTAGGCCATTGC
881 CCCAGGCCTTCCATGGGTCTGTCAGGAATATTCGTTACAAAGCAGAGCAAGAAGCAGTATGTCTCTGAAGTGGATTACAG
961 TGGCAGTTATTTTACAAGGATTTGTGACACTAGTAACATACCCGTGTAACCCTTTGAGAACTATCAGACCAGCTTTCAGA
1041 GTCTTAGGATTGTCGGTCTTGCGATCTGATAAATTATAGAACTGGGCAATGGTAAAAACAGTCACAAGTTCAAGAAGTTC
1121 AGGTTTTTAAAACAGATATCCTATAATGTCATATAATTTTTAAATGATTTACAAGACTACATAAATGTGTTTATAACAAA
1201 CAGAAATGATGTTACTTGCCAAAATTTTTCTGGCAAATAAAAAAGGTATTTTATTAAGATTCTCATAAATCTGAAATTTT
1281 ATTTGAAAAACTGATAATAGCCTAAGTCTTCTTTTCTTTTTTTTAGGCATACTGAATTTCTGTTTTAAAATCCATTGCAT
1361 GAAAATTCAATTTGCCTTGGTATATGCAGTTAGCATTGCCATTTTAAAAATGAATTAAAACGGTGACTCTGAAGTTGCAT
1441 GAATATCCTCCAGTGCATTACCTATTGCATGTCCACCATAGTTCTCAAAGGGTTAGTGTGGCTTCTGGCATTTAGCCGTC
1521 CATTTGATCACTGACAGAGCCAAGAGACCACCAAAGCATTTCATTGTTGAGTGTAATTTGTCCTAACAGCAGTATTGTCA
1601 TTTTCATGTGACCTGCAGAGCAGGTTTGTATCAATATTTTTTTCCTAGAGAAAAGTCAGCAACTGACAGACCTCTTTATT
1681 GATTTTTAGGAGCTGCTTCTTGCAGTGAAAGGCTTTACAGCCACTGGGCTGTGAACTTATTAGA GATGGTCAGAATGAAT
1761 GCACCCCATGAGTCAGACATTGGCTTTGTGTGAAAGCCAGCTTTGAGGGGATTAGCTTTTGAAACAATGAACAGCTTGCC
1841 TTGAACTTGATTATTGATCTATTGACTGTCATTAACAACAACTTAAACATTGTCTTCTGTGAAAATTTTCCTTGAAGAGT
1921 CCTGTTCTATGTCTTTGCCCTTTGACCTTTAACTTGCAAACTGGCACAAACTGAAGGAAATCTGGTGTTGCTTCTCCATT
2001 GGATTAGTTGTTCTCTAAAACCTAGTAAGCATGAGCTGTTTCCTTAGAGTGGAGAGAGTGGTGATGGCAGATCTGCAGAT
2081 GGACACTTTGCTCTTTACATGCACACTCTGAAAATGCCCTATAGGTAGAAGTGAATTTTAATTTCATTTTAATATAATTT
2161 CAAGTCTAAATTCATCATTTTAGTACAAATTACAAAAACTATAGGAAAAAAAAAACCTCAAATACTTGAATGGCCAGTGT
2241 GGCTTTTATATAAAGCAGGAATTTTATACTAGTAAAAATTTCTTACTCATTTGCTAATACACATTTCCAGATGATTTTTA
2321 ATGAGTGTAGGTATACATTCTTATTTGGAAATGGATAGTTTGGCTGCCTTGAATTTATATTTATACTCAACGTAGCATGA
2401 AAATTAGAATGCCTTTTGGTTAAACTACATGTTTATGATTTGGTTGGGGAAAATATTTTATAATTGTGGGTGGCATGCTG
2481 CAAAGCCTTGCAGATTGTTATTTCTTACAACCTGAGCGTATATAGTATGAGCCTAAGAAAAAAGAAGAGTAAGAAAAGAA
2561 GAATGGCTTTACAGTAAAATATCATACAATGCAGACAATATTTTAAGAGGATATTGGAGATTATGTACGCAAGGGCCAAG
2641 AAAGCAAGAAATGAGAACCAGAGTCAGCCCTGTAGCTTTACTTCAGTGCTTCCATTCTAGATGATGCTGATATTATAAAG
2721 AGTTAGTCACTGCTGCTAAGCATGGAGGACTATATACATAAGCTCGTTTATACAGTGTTTGCTTGTGGGAGGGTTTAATC
2801 CTTTTAGGGCCTTGATGTCAAGAAAAAAATAACTGGAAACTATATTTTGCTAAAGATAGAAATGAGGAACTGTGTCATTT
2881 TGGGACATGTGCAAATCATTGAGGAACTCCATCACCCTGCATTGAAAATTGATTTTTTTTTCCTCTAAAATGAGAAAGAA
2961 ACTGAATAAGCAATCTGTTGCCTCTTTACTCATTCATCACAATATCCTGATTCGTCATAAGGCTATCAGTATATAAGGGC
3041 TAGAAAATAATCATAGCATTAAGAAGGAAGGAGTCTATCATTATGCTTGAATTCTGGCAAATGTCATGAATAAGGGTTGG
3121 GTCATATTTACTTTAATATGAGACAAGATTTATGTGATAAGCAAAGGCATATAAGGCTGCTCTTTTGAACAGAACATTTC
3201 AGTTATCAGGCTGTACTATTACAAGAGATAAGAAGACAATAAGGACAATGTAATCACAAACAGTGGGATTCCATTTGTTT
3281 ATTGTACACCAGCTACTTTGTGGGTATGGTTCCTGACTCCTCTTCTACATGAGGTTTGGGAAAAAAGTCTCAAACCAAAT
3361 GGAACAGTGAAAGGGAAAGTAATTCATCTAGCACATAAGAATAGTGATTCAAAACCAATGCAGAATAAATTTCCATGGGT
3441 CAATAACATAAGGTGTCAGTTCAGTGTTACTAGAGATATGCAAGGCATAAAATATTTTCATCACCCCATCACTAATAACA
3521 TGAAAAGCTCAGACATAGGATTTCCCAAATTGAAATGAAAACACATTCATGCCTGCAAAAATAATTCTCCTTCTGCTTCA
3601 TTTCTCATTACTTTATCTAATATAAACACAAATGTAAACAAGGTAATGGTCTTCATGTAAAATGACCATATAGTTAAGAA
3681 TTTTAGTAAAATATTGTTGTTCTGTGTATTATTAAACAAATGCAATGAAGTATTAAAATAGCTGATCAGTTTGAATTTCC
3761 TGTAAAGCAGTAATTCCGCATCAGAATTGTAGATAAGGTTGTGAATTTATTGACTCATTTCAGAACAGTGTCTGTTGACA
3841 TGGCAGTCAGAGCAGGTGAATACAGATGCTCTTTCTGATTGCAAAGGTTATAGAGCTAAATTAGACAGCATTATGTGATA
3921 CTAGCAAAGACAACTTCTGTTATAAATCAGAGGGCAAGGCTTTTCTGAATCGATGTGATAAATTACTAAGTAATGATTAC
4001 CAAAAATAATTACTAAGTAATAAAAGATACAGACTGGTTTACTGAAATAAGCAAGTGTTACATTTAATAATTACCTATAA
4081 TCTTTTTTTGTTAACACATAAGCAAGTGTTACCTTTAATAATTACCTATAATCTTTTTTTGTTAACACATAATTTGGCCA
4161 TTTCATATACTGTGTACCTATTTTCATTCCCTCTCTGTGGGTCATTAAAAAACACAATGTGGTGGATAAAAAAAAAAAAA
4241 A
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' agCUGAC-GGUGAGAAUGAUCu 5'
| | | :|| | |||||||
Target 5' gtGTCAGTTCAGTGTTACTAGa 3'
|
3453 - 3474
|
151.00 |
-12.10 |
2
|
miRNA 3' agCUGACGGUGAGAAUGAUCu 5'
|:|||: | ||||:|||
Target 5' tgGGCTGTGA-ACTTATTAGa 3'
|
1725 - 1744
|
142.00 |
-16.70 |
3
|
miRNA 3' agCUGACGGUGAGAAUGAUCu 5'
|:||| :||| |||| ||
Target 5' caGGCTG-TACTATTACAAGa 3'
|
3207 - 3226
|
134.00 |
-13.50 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|