miRTarBase - #MIRT524121


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pre-miRNA Information
pre-miRNA hsa-mir-6839   
Genomic Coordinates chr7: 64679064 - 64679176
Description Homo sapiens miR-6839 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6839-3p
Sequence 92| UUGGGUUUUCUCUUCAAUCCAG |113
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN15661209 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1426245091 3 dbSNP
rs533324498 6 dbSNP
rs1169594864 16 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DMXL1   
Synonyms -
Description Dmx like 1
Transcript NM_005509   
Expression
Putative miRNA Targets on DMXL1
3'UTR of DMXL1
(miRNA target sites are highlighted)		 
>DMXL1|NM_005509|3'UTR
   1 CATTTTTACAATAAGATGTACAATTTATTACCTATATGGAAGTGGCCAACAGATATAATATACAGTGATCATTCTCTATG
  81 CCACAAATTAGCTAATGCTTTCTTGTTTTTATATTTATTTTATGGAGCTTTGCCCTTGATGCACTGATGCCTTAAAAATT
 161 AACAAGGTCATTCAGAAGTAGATTACATTGCCTAAAGTAGAATGTGTAAGTAATGCTGTAATAATACATATCATAGTATA
 241 TTATAATCAGTATGTCATAGTGTTAAAGGTGTTTTGTTTTCTTATTGATACTTTTCCACAGGCATCTCTGCATGAATTTC
 321 TTCCACAGTAAAAATACGTTTTTTGTAAAGGCAATTGTACATAATACTCATCACTTAATTCACCACACTCTCACTTCCTT
 401 TATTAGCCTTATACATCTCAAACTCTTCTCTTAATTAATGATAGGTATTTGAGTAAGAATGAAAAAAATAATGAACATCT
 481 TCATTAAAATTGTCATTGAGACGTCAGTGATAAATGAGCTAGATGGCTCAATATGTAAGGTTTTCAGTAGTTTACCCTCC
 561 GGAACCCAAGTTGTATGTATGTATACGTGTGTGTGTGTGTGTGTGTGTGTATCTTACACATCTTATTTGAACTTAGTTGT
 641 ATATATTAGCGAAAACTGGTTTTTCATGTGTTTTTGTGCCATAACAACTATTGCCACCAGAATAACTTTTTTTTTGCAAC
 721 TGTGCTTTTCATTTTTAAAAAATTTTTGAATTCCCATCCTAATTTTCAAATAAGTTTCAAGGAGACTATCAGGATTATTA
 801 TTTTAAAGATTAGATTTAGTCAAATAAGTCTTAGCAGGCAATAAAGTTTCTGTGGTGGCATATATCATGTAAGACACTTA
 881 AAGTAAGTTTGTGAATTTGTCAACTTTCGAGCATCAAACAAATATTTTACTTAAATTTTATTTTATCTTATTTTTAGGTG
 961 CTTTTAATCTCAAAATTCTGAAAAGCGAATAGCAGTGTTTTCAGAAACAAATGTGAAAGCAGTCAAATTAAGTAGATACT
1041 ATTTAGAAATGTAAAATACTCTCCAGATCTACCATTAATAGAAAATAAACTAAACCTTATATTTTATTTTTGCCAAAATA
1121 TTTTATTATAAAATATGACCAAAATATTTAAAATGCACAATGCTTTTAACTTAAATGTGCTAACCCTGTTTCTGTCTGTT
1201 TTGTGCTGTACCTTTTCTGATTCAGAATTATAGAAAACTTGATAAATACTTGATTTTAACCAATGAGACTACAGGCAGAT
1281 GGGACTAAGTGTTTATGGGACAATTATGTACTATTTAACTTAAATATATTTTGTTTAATAGGAAATATATAATAATAGCA
1361 TTTTATGTAATAAAATATGGGCAACGATTATCTTGGAAATTAAAGAGTCAAAGCAAAGAAATGAAGGGCTGGTAAAATGA
1441 ATTTTGTAATATCCTCAGGATACTTTTATCTTAAAAGTATGTTGTTAAAGATTTTGTAAATTGTATTTCAACAATTTTAA
1521 ATGTGTTGAGCAAGTTGCAGTGCAAACACTGTCATTATGTAGAGAGTTTATATGCACATAATAACCTGTACCTATAAATC
1601 GTGCAATAACCATATGCGACTATTTTGCCATGGAGAAATCTGACAGCATTGCAAACAATAGTATTGTTTGATGTAGTTAA
1681 CCTTAAGTTATTTTTCAGTAATTTCTTCACAAATCAAGATTCAAACAGCTTTAAACACTTCCAATGAGATAAAATATTTA
1761 CTATTATGCTTATTAGAACAAAAGGTGTTTAAGGATGAACTAAATATTTTAATTGAGCATTTATATGGATAATCATACAT
1841 TATGTAAGCCCATATGTATTTACATCCAGAGTCATAATATTTTAAATAAACAATCATGCAGAAACTTTTTAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaCCUA--ACU-UCU----CUUUUGGGUu 5'
            ||||  | | | |    | ||:|||| 
Target 5' atGGATAATCATACATTATGTAAGCCCAt 3'
 1825 - 1853 128.00 -12.20
2 
miRNA  3' gaccuaacuucucUUUUGGGUu 5'
                       ::|||||| 
Target 5' tagtttaccctccGGAACCCAa 3'
 548 - 569 125.00 -8.70
3 
miRNA  3' gaccUAACUUCUCUUUUGGGUu 5'
              |||| | | || ||:|| 
Target 5' ggcaATTGTACATAATACTCAt 3'
 350 - 371 118.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31516444 7 COSMIC
COSN31497097 12 COSMIC
COSN30160518 13 COSMIC
COSN507942 15 COSMIC
COSN30493693 26 COSMIC
COSN31523480 252 COSMIC
COSN31579590 269 COSMIC
COSN1305795 306 COSMIC
COSN31539033 338 COSMIC
COSN22384977 517 COSMIC
COSN24837752 610 COSMIC
COSN20101720 611 COSMIC
COSN18723818 612 COSMIC
COSN20101721 716 COSMIC
COSN17075831 909 COSMIC
COSN7859492 936 COSMIC
COSN30539646 948 COSMIC
COSN31548633 1114 COSMIC
COSN31520965 1124 COSMIC
COSN16129625 1226 COSMIC
COSN5067711 1426 COSMIC
COSN31587969 1464 COSMIC
COSN26581326 1524 COSMIC
COSN29024893 1535 COSMIC
COSN30541084 1618 COSMIC
COSN31522626 1706 COSMIC
COSN31959957 1817 COSMIC
COSN15293383 1820 COSMIC
COSN31569700 1842 COSMIC
COSN6858800 1887 COSMIC
COSN32063522 1894 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771868790 1 dbSNP
rs1284154371 4 dbSNP
rs1158219111 12 dbSNP
rs370042682 14 dbSNP
rs760628920 16 dbSNP
rs1222645901 18 dbSNP
rs1276459774 19 dbSNP
rs527599716 24 dbSNP
rs753612213 26 dbSNP
rs773247501 26 dbSNP
rs1407200090 33 dbSNP
rs1215901129 35 dbSNP
rs754776576 36 dbSNP
rs1487020745 37 dbSNP
rs764277951 42 dbSNP
rs1016353230 47 dbSNP
rs1269125685 49 dbSNP
rs1340451946 50 dbSNP
rs1480336589 51 dbSNP
rs751799414 51 dbSNP
rs757500155 52 dbSNP
rs1272091600 53 dbSNP
rs980024123 57 dbSNP
rs1307594539 62 dbSNP
rs1423107460 69 dbSNP
rs536040482 79 dbSNP
rs898254070 86 dbSNP
rs1425760868 98 dbSNP
rs1416438989 105 dbSNP
rs1467228117 110 dbSNP
rs1297847885 120 dbSNP
rs962765674 124 dbSNP
rs995661568 133 dbSNP
rs1162857458 137 dbSNP
rs1474915437 145 dbSNP
rs1354116029 148 dbSNP
rs1460676122 149 dbSNP
rs1190659528 151 dbSNP
rs1482296693 153 dbSNP
rs1250197923 159 dbSNP
rs1025337557 165 dbSNP
rs536820929 166 dbSNP
rs547388185 168 dbSNP
rs188774376 171 dbSNP
rs796808072 178 dbSNP
rs1291957331 181 dbSNP
rs1342982453 183 dbSNP
rs1293870935 187 dbSNP
rs765612845 195 dbSNP
rs1328543736 198 dbSNP
rs1218670760 201 dbSNP
rs555238633 205 dbSNP
rs942835950 211 dbSNP
rs1044040268 222 dbSNP
rs1398986150 224 dbSNP
rs1291983128 226 dbSNP
rs549846586 234 dbSNP
rs1461025087 237 dbSNP
rs573023462 237 dbSNP
rs1256292665 239 dbSNP
rs925506368 240 dbSNP
rs935706967 241 dbSNP
rs1053219030 243 dbSNP
rs1482797407 244 dbSNP
rs762138883 250 dbSNP
rs891424490 258 dbSNP
rs1013968315 259 dbSNP
rs1045450253 272 dbSNP
rs1136729 277 dbSNP
rs1136730 282 dbSNP
rs949434228 282 dbSNP
rs1273211767 283 dbSNP
rs1136732 285 dbSNP
rs905744827 286 dbSNP
rs1327077403 294 dbSNP
rs1278873821 295 dbSNP
rs1239569129 299 dbSNP
rs1001306122 300 dbSNP
rs1299506536 301 dbSNP
rs1440385910 323 dbSNP
rs1016880817 327 dbSNP
rs1371836669 328 dbSNP
rs540749486 328 dbSNP
rs962963512 338 dbSNP
rs1159629438 339 dbSNP
rs994075020 339 dbSNP
rs1455708491 346 dbSNP
rs926886141 355 dbSNP
rs1194411991 357 dbSNP
rs1418908348 360 dbSNP
rs1026067827 363 dbSNP
rs938227309 375 dbSNP
rs1253237620 382 dbSNP
rs1195021777 390 dbSNP
rs758304197 393 dbSNP
rs1283529299 399 dbSNP
rs1426890276 399 dbSNP
rs986916252 401 dbSNP
rs147009038 404 dbSNP
rs964228688 405 dbSNP
rs1348952091 406 dbSNP
rs1305880434 412 dbSNP
rs1433051300 413 dbSNP
rs1325898887 415 dbSNP
rs138231694 416 dbSNP
rs1384366595 421 dbSNP
rs1400530686 425 dbSNP
rs367893188 431 dbSNP
rs1362955539 433 dbSNP
rs1435715871 434 dbSNP
rs1175099252 439 dbSNP
rs1395359130 439 dbSNP
rs561919426 444 dbSNP
rs886831861 445 dbSNP
rs1193827541 452 dbSNP
rs1007904560 454 dbSNP
rs1255311183 455 dbSNP
rs1209963440 456 dbSNP
rs1019250467 459 dbSNP
rs76045084 463 dbSNP
rs935586767 472 dbSNP
rs1052669313 473 dbSNP
rs912935794 474 dbSNP
rs751535235 495 dbSNP
rs1230262992 503 dbSNP
rs1045481325 504 dbSNP
rs1346753331 517 dbSNP
rs1312785799 525 dbSNP
rs17145034 532 dbSNP
rs1287922137 536 dbSNP
rs780770544 540 dbSNP
rs1314355073 541 dbSNP
rs1488542006 547 dbSNP
rs1418174488 561 dbSNP
rs553023002 562 dbSNP
rs35886280 565 dbSNP
rs1240348151 566 dbSNP
rs143372323 567 dbSNP
rs2896840 574 dbSNP
rs1426089757 575 dbSNP
rs1485894110 576 dbSNP
rs926624354 581 dbSNP
rs1037904377 587 dbSNP
rs1234388887 587 dbSNP
rs1247458994 587 dbSNP
rs141470513 587 dbSNP
rs527412585 587 dbSNP
rs754808189 587 dbSNP
rs920832793 587 dbSNP
rs938300753 587 dbSNP
rs71585207 588 dbSNP
rs1172101128 589 dbSNP
rs1047856945 590 dbSNP
rs1382559935 592 dbSNP
rs763479045 603 dbSNP
rs1475459425 610 dbSNP
rs1420763723 612 dbSNP
rs1175329473 616 dbSNP
rs1469420137 618 dbSNP
rs1318232231 620 dbSNP
rs1233709502 627 dbSNP
rs1343999238 630 dbSNP
rs777447489 632 dbSNP
rs573690092 633 dbSNP
rs1293637667 636 dbSNP
rs73247077 637 dbSNP
rs1223626644 639 dbSNP
rs1374469905 640 dbSNP
rs1279802903 643 dbSNP
rs1025551818 646 dbSNP
rs1448469465 647 dbSNP
rs1231637933 651 dbSNP
rs145791993 652 dbSNP
rs1461501245 653 dbSNP
rs1351602415 657 dbSNP
rs1156804828 661 dbSNP
rs1399929142 667 dbSNP
rs955395873 669 dbSNP
rs772449986 674 dbSNP
rs1179188670 677 dbSNP
rs1452740413 683 dbSNP
rs1223057150 684 dbSNP
rs1018398017 691 dbSNP
rs1032694022 692 dbSNP
rs1240906245 695 dbSNP
rs1215651114 698 dbSNP
rs1317921643 699 dbSNP
rs964135106 702 dbSNP
rs1241872298 706 dbSNP
rs5870844 707 dbSNP
rs796296264 707 dbSNP
rs377629915 708 dbSNP
rs1253723084 716 dbSNP
rs75938587 716 dbSNP
rs1302217574 718 dbSNP
rs576492702 719 dbSNP
rs1369052208 720 dbSNP
rs1191984383 721 dbSNP
rs1032934415 723 dbSNP
rs1440678905 725 dbSNP
rs1429874843 729 dbSNP
rs971260155 731 dbSNP
rs1160308728 734 dbSNP
rs982152804 737 dbSNP
rs1394760999 740 dbSNP
rs181731216 741 dbSNP
rs988840483 744 dbSNP
rs1406372852 750 dbSNP
rs138425227 755 dbSNP
rs527535626 759 dbSNP
rs1186460457 764 dbSNP
rs1486439120 767 dbSNP
rs1244328150 768 dbSNP
rs1209248160 772 dbSNP
rs1485535807 782 dbSNP
rs949750915 783 dbSNP
rs981086980 787 dbSNP
rs973347940 789 dbSNP
rs920851662 796 dbSNP
rs1292741458 801 dbSNP
rs547723308 824 dbSNP
rs926938490 825 dbSNP
rs912055244 829 dbSNP
rs937088990 831 dbSNP
rs1412747414 839 dbSNP
rs1038088465 841 dbSNP
rs1263467008 842 dbSNP
rs898356346 853 dbSNP
rs1467722391 855 dbSNP
rs1371407201 859 dbSNP
rs1040796152 860 dbSNP
rs76524404 861 dbSNP
rs1426470302 863 dbSNP
rs932321226 869 dbSNP
rs1047443363 883 dbSNP
rs891032407 886 dbSNP
rs1272545135 895 dbSNP
rs1009484579 903 dbSNP
rs3797338 908 dbSNP
rs1018303822 909 dbSNP
rs899801414 910 dbSNP
rs1440446546 912 dbSNP
rs1001392942 924 dbSNP
rs1032426995 931 dbSNP
rs1354594944 935 dbSNP
rs186398723 935 dbSNP
rs1293609548 943 dbSNP
rs1033738385 957 dbSNP
rs988314534 987 dbSNP
rs529693066 988 dbSNP
rs549547223 991 dbSNP
rs1462595766 993 dbSNP
rs973813839 996 dbSNP
rs6887690 1008 dbSNP
rs1461321667 1009 dbSNP
rs1419210032 1013 dbSNP
rs1190122105 1016 dbSNP
rs1231541188 1023 dbSNP
rs980949715 1039 dbSNP
rs1248032340 1040 dbSNP
rs532129540 1042 dbSNP
rs1457837752 1047 dbSNP
rs116007681 1062 dbSNP
rs1417842550 1065 dbSNP
rs1446381167 1068 dbSNP
rs1459390169 1071 dbSNP
rs1172236603 1081 dbSNP
rs1136734 1085 dbSNP
rs373178797 1086 dbSNP
rs1136735 1094 dbSNP
rs1409027594 1096 dbSNP
rs1156851232 1100 dbSNP
rs1273722829 1100 dbSNP
rs1333734161 1101 dbSNP
rs191248929 1110 dbSNP
rs1342039971 1126 dbSNP
rs1448559066 1134 dbSNP
rs974268403 1136 dbSNP
rs534165129 1137 dbSNP
rs919666344 1138 dbSNP
rs568343425 1141 dbSNP
rs974881111 1147 dbSNP
rs1165479177 1150 dbSNP
rs1292574218 1156 dbSNP
rs554038952 1161 dbSNP
rs929825521 1163 dbSNP
rs1046943477 1181 dbSNP
rs890937953 1185 dbSNP
rs943946163 1186 dbSNP
rs1439851738 1187 dbSNP
rs567645153 1190 dbSNP
rs1239608296 1191 dbSNP
rs1191269670 1204 dbSNP
rs536631715 1215 dbSNP
rs1467620351 1228 dbSNP
rs932352324 1231 dbSNP
rs1039635701 1232 dbSNP
rs1053904148 1237 dbSNP
rs1340249099 1238 dbSNP
rs899873217 1243 dbSNP
rs1195446732 1244 dbSNP
rs1259862908 1250 dbSNP
rs1271224883 1262 dbSNP
rs371578784 1265 dbSNP
rs1356193422 1287 dbSNP
rs1000857092 1288 dbSNP
rs556295160 1300 dbSNP
rs1440319409 1301 dbSNP
rs1371772349 1304 dbSNP
rs1326139919 1315 dbSNP
rs1380966663 1319 dbSNP
rs1384701796 1320 dbSNP
rs1212102639 1323 dbSNP
rs770109656 1335 dbSNP
rs1289883508 1336 dbSNP
rs559597484 1345 dbSNP
rs1474527859 1349 dbSNP
rs1171326757 1369 dbSNP
rs1453299787 1381 dbSNP
rs892564890 1386 dbSNP
rs1445280360 1387 dbSNP
rs1260943671 1388 dbSNP
rs576454294 1396 dbSNP
rs1042289862 1408 dbSNP
rs1003339499 1410 dbSNP
rs906430366 1410 dbSNP
rs1278499720 1417 dbSNP
rs1233784593 1421 dbSNP
rs1054845202 1439 dbSNP
rs1474834211 1440 dbSNP
rs895273613 1441 dbSNP
rs1225323732 1443 dbSNP
rs1326412672 1452 dbSNP
rs1319530153 1456 dbSNP
rs545174147 1457 dbSNP
rs1402287546 1462 dbSNP
rs1373983028 1465 dbSNP
rs1435070224 1466 dbSNP
rs994922008 1472 dbSNP
rs1433645976 1474 dbSNP
rs530681582 1480 dbSNP
rs950728116 1481 dbSNP
rs1373497317 1487 dbSNP
rs1010044605 1510 dbSNP
rs1019222759 1539 dbSNP
rs1194249754 1550 dbSNP
rs1478695101 1561 dbSNP
rs1255069509 1578 dbSNP
rs558742917 1585 dbSNP
rs1210440350 1590 dbSNP
rs1443276845 1593 dbSNP
rs773612791 1595 dbSNP
rs974912189 1601 dbSNP
rs970834804 1602 dbSNP
rs1002444143 1607 dbSNP
rs1033890591 1611 dbSNP
rs958639011 1612 dbSNP
rs747596948 1618 dbSNP
rs762784452 1619 dbSNP
rs149267230 1623 dbSNP
rs1340750400 1625 dbSNP
rs1226860385 1631 dbSNP
rs1407748707 1632 dbSNP
rs951179152 1650 dbSNP
rs1171318392 1660 dbSNP
rs1268611783 1660 dbSNP
rs1347444364 1663 dbSNP
rs1235423396 1664 dbSNP
rs1415572196 1664 dbSNP
rs1042410704 1667 dbSNP
rs766305420 1670 dbSNP
rs982486931 1673 dbSNP
rs755759162 1682 dbSNP
rs1437337954 1690 dbSNP
rs541257618 1695 dbSNP
rs180830352 1699 dbSNP
rs1258726734 1703 dbSNP
rs939269593 1716 dbSNP
rs1219431019 1718 dbSNP
rs912435701 1728 dbSNP
rs943851425 1732 dbSNP
rs1229291826 1741 dbSNP
rs1039668263 1745 dbSNP
rs144511410 1755 dbSNP
rs1439500600 1764 dbSNP
rs921179854 1769 dbSNP
rs1331515904 1779 dbSNP
rs751384512 1786 dbSNP
rs1392257026 1788 dbSNP
rs886495846 1788 dbSNP
rs1405770554 1794 dbSNP
rs1415629945 1801 dbSNP
rs759507823 1806 dbSNP
rs3733854 1807 dbSNP
rs1469880208 1815 dbSNP
rs767424382 1816 dbSNP
rs1180643828 1817 dbSNP
rs1467170132 1818 dbSNP
rs1454463078 1820 dbSNP
rs892423646 1823 dbSNP
rs1009616070 1829 dbSNP
rs1222894873 1836 dbSNP
rs1282517393 1839 dbSNP
rs752224241 1842 dbSNP
rs563143389 1851 dbSNP
rs1352600045 1856 dbSNP
rs966325073 1860 dbSNP
rs906749853 1865 dbSNP
rs1368096895 1867 dbSNP
rs1194503700 1875 dbSNP
rs996424111 1887 dbSNP
rs1029194873 1888 dbSNP
rs755674870 1889 dbSNP
rs1289359766 1890 dbSNP
rs957544237 1892 dbSNP
rs777356295 1893 dbSNP
rs1034373091 1894 dbSNP
rs1381196368 1896 dbSNP
rs532195589 1903 dbSNP
rs1332996369 1908 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 1657.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gaccuaacUUCUCUUUUGGGUu 5'
                  | |: :||||||| 
Target 5' uggccaacAUGGUGAAACCCAu 3'
 		1 - 22
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000311085.8 | 3UTR | UGGCCAACAUGGUGAAACCCAUCUCUACUAAAAAUACAAAAAUUAGUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
62 hsa-miR-6839-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059162 TXNIP thioredoxin interacting protein 2 2
MIRT064872 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT065802 HOXC8 homeobox C8 2 4
MIRT106005 SDCBP syndecan binding protein 2 2
MIRT275773 TFDP1 transcription factor Dp-1 2 2
MIRT314032 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT360277 HIST1H2BE histone cluster 1 H2B family member e 2 8
MIRT360301 HIST1H2BH histone cluster 1 H2B family member h 2 2
MIRT450086 OR2A4 olfactory receptor family 2 subfamily A member 4 2 2
MIRT468815 RSRC2 arginine and serine rich coiled-coil 2 2 6
MIRT475093 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT477575 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
MIRT483926 LCORL ligand dependent nuclear receptor corepressor like 2 6
MIRT504381 HIST1H1C histone cluster 1 H1 family member c 2 4
MIRT506970 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 6
MIRT507028 HIST1H3B histone cluster 1 H3 family member b 2 6
MIRT511561 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT511650 HIST1H3D histone cluster 1 H3 family member d 2 6
MIRT511696 HIST1H2BL histone cluster 1 H2B family member l 2 4
MIRT511737 HIST1H2BB histone cluster 1 H2B family member b 2 6
MIRT511746 HIST1H2BA histone cluster 1 H2B family member a 2 8
MIRT515260 CSNK1E casein kinase 1 epsilon 2 2
MIRT516220 RAB3B RAB3B, member RAS oncogene family 2 4
MIRT523281 HIST1H1E histone cluster 1 H1 family member e 2 2
MIRT524121 DMXL1 Dmx like 1 2 2
MIRT530744 GPR82 G protein-coupled receptor 82 2 2
MIRT532214 CCDC117 coiled-coil domain containing 117 2 2
MIRT546182 TPRG1L tumor protein p63 regulated 1 like 2 2
MIRT558638 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT559562 ARF1 ADP ribosylation factor 1 2 4
MIRT560680 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT570746 AAK1 AP2 associated kinase 1 2 2
MIRT609518 RAB3IP RAB3A interacting protein 2 2
MIRT612583 SYNGAP1 synaptic Ras GTPase activating protein 1 2 4
MIRT615733 RIOK3 RIO kinase 3 2 2
MIRT616068 SIX1 SIX homeobox 1 2 2
MIRT617903 SGCD sarcoglycan delta 2 2
MIRT620851 SERPING1 serpin family G member 1 2 2
MIRT625107 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625120 NUP93 nucleoporin 93 2 2
MIRT625893 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626569 MED7 mediator complex subunit 7 2 2
MIRT626694 ZFP14 ZFP14 zinc finger protein 2 4
MIRT626808 PRR11 proline rich 11 2 2
MIRT628131 HM13 histocompatibility minor 13 2 2
MIRT636596 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT649866 SLFN12L schlafen family member 12 like 2 2
MIRT652133 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652663 TIMELESS timeless circadian clock 2 2
MIRT658335 FAM83D family with sequence similarity 83 member D 2 2
MIRT660615 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT666304 SLC22A3 solute carrier family 22 member 3 2 2
MIRT668528 ERGIC2 ERGIC and golgi 2 2 2
MIRT692510 PARD3 par-3 family cell polarity regulator 2 2
MIRT694784 DHFRL1 dihydrofolate reductase 2 2 2
MIRT700510 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT701438 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT710155 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT711436 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT716979 GPR155 G protein-coupled receptor 155 2 2
MIRT720155 POU2F2 POU class 2 homeobox 2 2 2
MIRT722512 DSTYK dual serine/threonine and tyrosine protein kinase 2 2

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