pre-miRNA Information | |
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pre-miRNA | hsa-mir-4703 |
Genomic Coordinates | chr13: 51552589 - 51552667 |
Description | Homo sapiens miR-4703 stem-loop |
Comment | None |
RNA Secondary Structure |
Mature miRNA Information | ||||||||||||||||||||||||||||||||||
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Mature miRNA | hsa-miR-4703-3p | |||||||||||||||||||||||||||||||||
Sequence | 49| UGUAGUUGUAUUGUAUUGCCAC |70 | |||||||||||||||||||||||||||||||||
Evidence | Experimental | |||||||||||||||||||||||||||||||||
Experiments | Illumina | |||||||||||||||||||||||||||||||||
SNPs in miRNA |
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Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | CMPK1 | ||||||||||||||||||||
Synonyms | CK, CMK, CMPK, UMK, UMP-CMPK, UMPK | ||||||||||||||||||||
Description | cytidine/uridine monophosphate kinase 1 | ||||||||||||||||||||
Transcript | NM_001136140 | ||||||||||||||||||||
Other Transcripts | NM_016308 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on CMPK1 | |||||||||||||||||||||
3'UTR of CMPK1 (miRNA target sites are highlighted) |
>CMPK1|NM_001136140|3'UTR 1 TTCTAAACCTGAAGGCATCCTTGAAATCATGCTTGAATATTGCTTTGATAGCTGCTATCATGACCCCTTTTTAAGGCAAT 81 TCTAATCTTTCATAACTACATCTCAATTAGTGGCTGGAAAGTACATGGTAAAACAAAGTAAATTTTTTTATGTTCTTTTT 161 TTTGGTCACAGGAGTAGACAGTGAATTCAGGTTTAACTTCACCTTAGTTATGGTGCTCACCAAACGAAGGGTATCAGCTA 241 TTTTTTTTAAAATTCAAAAAGAATATCCCTTTTATAGTTTGTGCCTTCTGTGAGCAAAACTTTTTAGTACGCGTATATAT 321 CCCTCTAGTAATCACAACATTTTAGGATTTAGGGATACCCGCTTCCTCTTTTTCTTGCAAGTTTTAAATTTCCAACCTTA 401 AGTGAATTTGTGGACCAAATTTCAAAGGAACTTTTTGTGTAGTCAGTTCTTGCACAATGTGTTTGGTAAACAAACTCAAA 481 ATGGATTCTTAGGAGCATTTTAGTGTTTATTAAATAACTGACCATTTGCTGTAGAAAGATGAGAAAACTTAAGCTTTGTT 561 TTACTACAACTTGTACAAAGTTGTATGACAGGGCATATTCTTTGCTTCCAAGATTTGGGTTGGGGGCACTAGGGGTTCAG 641 AGCCTGGCAGAATTGTCAGCTTTAGTCTGACATAATCTAAGGGTATGGGGCAAGGATCACATCTAATGCTTGTGTTCCTT 721 ATACTCTATTATATAGTGTTATTCATGATTCAGCTGATCTTAACAAAATTCGTAGCAGTGGAACCTTGAAATGCATGTGG 801 CTAGATTTATGCTAAAATGATTCTCAGTTAGCATTTTAGTAACACTTCAAAGGTTTTTTTTTGTTTGTTTTCTAGACTTA 881 ATAAAAGCTTAGGATTAATTAGAAGAAGCAATCTAGTTAAATTTCCCATTTGTATTTTATTTTCTTGAATACTTTTTTCA 961 TAGTTATTTGTTTAAAAAGATTTAAAAATCATTGCACTTTGGTCAGAAAAATAATAAATATATCTTATAAATGTTTGATT 1041 CCCTTCCTTGCTATTTTTATTCAGTAGATTTTTGTTTGGCATCATGTTGAAGCACCGAAAGATAAATGATTTTTAAAAGG 1121 CTATAGAGTCCAAAGGAATATTCTTTTACACCAATTCTTCCTTTAAAAATCTCTGAGGAATTTGTTTTCGCCTTACTTTT 1201 TTTTCTTCTGTCACAATGCTAAGTGGTATCCGAGGTTCTTAATATGAGATTTAAAATCTTAAAATGTTTCTTATTTTCAG 1281 CACTTACATCATTTGGTACACAGGGTCAAATAGGGCAAATAATTTTGTCTTTGTATAATAGATTTGATATTTAAAGTCAC 1361 TGGAAATAGGACAAGTTAATGGATGTTTTTATATTTTAATAGAATCATTTATTTCTATGTGTTATGAAATTCACTTAATG 1441 ATAAATTTTTCAACATACTTGCCATTAGAAAACAAAGTATTGCTAAGTACTATAACATATTGGCCACTAAAATTCATATT 1521 GAGATTATCTTGGTTTCTTGGAAGAGATAGGAATGAGTTCTTATCTAGTGTTGCAGGCCAGCAAATACAGAGGTGGTTTA 1601 ATCAAACAGCTCTAGTATGAAGCAAGAGTAAAGACTAAGGTTTCGAGAGCATTCCTACTCACATAAGTGAAGAAATCTGT 1681 CAGATAGGAATCTAAATATTTATAGTGAGATTGTGAAAGCAACCTTAAAGTTTTGAAGAAGACTGATGAGACTAGGTGCT 1761 TTGCTTCCTTTCATCAGGTATCTTTCTGTGGCATTTGAGAACAGAAACCAAGAAACATGGTAATTACTAAATTATGAGGC 1841 TTTGCTTTTTGTTTGCTTTTAAGTAGAAAAACATGTTGGCAACATTGAGTTTTGGAGTTGATTGAGATAATATGACTTAA 1921 CTAGTTTTGTCATTCCATTTGTTAAAGATACAGTCACCAAGAATGTTTTGAGTTTTTTGAAAGACCCCAATTTAAGCCTT 2001 GCTTATTTTTAAATTATTTCCATTCAGTGATGTTGGATGTATATCAGTTATTTAGTAAATAATCTCAATAAATTTTGTGC 2081 TGTGGCCTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs | |||||||||||||||||||||
SNPs in gene 3'UTRs |
Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | HEK293 | ||||||
Disease | 51727.0 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
"PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine
... - Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Memczak S; Jens M; Elefsinioti A; Torti F; et al. - Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
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CLIP-seq Support 1 for dataset GSM1065667 | |
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Method / RBP | PAR-CLIP / AGO1 |
Cell line / Condition | HEK293 / 4-thiouridine, ML_MM_6 |
Location of target site | ENST00000371873.5 | 3UTR | CAAUUCUAAUCUUUCAUAACUACAUCUCAAUUAG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23446348 / GSE43573 |
CLIP-seq Viewer | Link |
MiRNA-Target Expression Profile | |||||||
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MiRNA-Target Expression Profile (TCGA) | |||||||
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42 hsa-miR-4703-3p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT072026 | SCP2 | sterol carrier protein 2 | 2 | 2 | ||||||||
MIRT079071 | BIRC5 | baculoviral IAP repeat containing 5 | 2 | 6 | ||||||||
MIRT106648 | PLEKHF2 | pleckstrin homology and FYVE domain containing 2 | 2 | 4 | ||||||||
MIRT178174 | EIF5AL1 | eukaryotic translation initiation factor 5A-like 1 | 2 | 2 | ||||||||
MIRT190328 | HSP90AA1 | heat shock protein 90 alpha family class A member 1 | 2 | 2 | ||||||||
MIRT230081 | SH3BGRL | SH3 domain binding glutamate rich protein like | 2 | 2 | ||||||||
MIRT238900 | PEX3 | peroxisomal biogenesis factor 3 | 2 | 2 | ||||||||
MIRT473705 | MAPK1 | mitogen-activated protein kinase 1 | 2 | 6 | ||||||||
MIRT481891 | ANKRD46 | ankyrin repeat domain 46 | 2 | 4 | ||||||||
MIRT483743 | ALDH9A1 | aldehyde dehydrogenase 9 family member A1 | 2 | 2 | ||||||||
MIRT488823 | MRRF | mitochondrial ribosome recycling factor | 2 | 2 | ||||||||
MIRT488990 | SLC28A1 | solute carrier family 28 member 1 | 2 | 2 | ||||||||
MIRT504173 | FAM127B | retrotransposon Gag like 8A | 2 | 2 | ||||||||
MIRT524461 | CMPK1 | cytidine/uridine monophosphate kinase 1 | 2 | 2 | ||||||||
MIRT529787 | AP4S1 | adaptor related protein complex 4 sigma 1 subunit | 2 | 2 | ||||||||
MIRT546449 | SLC9A7 | solute carrier family 9 member A7 | 2 | 2 | ||||||||
MIRT547827 | IGF2BP3 | insulin like growth factor 2 mRNA binding protein 3 | 2 | 4 | ||||||||
MIRT561462 | TCERG1 | transcription elongation regulator 1 | 2 | 2 | ||||||||
MIRT562315 | G3BP1 | G3BP stress granule assembly factor 1 | 2 | 2 | ||||||||
MIRT563644 | ZNF675 | zinc finger protein 675 | 2 | 2 | ||||||||
MIRT563741 | ZNF107 | zinc finger protein 107 | 2 | 4 | ||||||||
MIRT568318 | BACH1 | BTB domain and CNC homolog 1 | 2 | 2 | ||||||||
MIRT571528 | ZNF367 | zinc finger protein 367 | 2 | 2 | ||||||||
MIRT574840 | CADM1 | cell adhesion molecule 1 | 2 | 2 | ||||||||
MIRT612262 | MNT | MAX network transcriptional repressor | 2 | 4 | ||||||||
MIRT622234 | SLC25A45 | solute carrier family 25 member 45 | 2 | 2 | ||||||||
MIRT625372 | IRGQ | immunity related GTPase Q | 2 | 2 | ||||||||
MIRT628260 | EFCAB14 | EF-hand calcium binding domain 14 | 2 | 2 | ||||||||
MIRT631738 | NKX2-1 | NK2 homeobox 1 | 2 | 2 | ||||||||
MIRT646103 | GORAB | golgin, RAB6 interacting | 2 | 2 | ||||||||
MIRT647768 | AMOTL1 | angiomotin like 1 | 2 | 2 | ||||||||
MIRT654309 | RBMS3 | RNA binding motif single stranded interacting protein 3 | 2 | 2 | ||||||||
MIRT654988 | PLCG2 | phospholipase C gamma 2 | 2 | 2 | ||||||||
MIRT659715 | CCDC93 | coiled-coil domain containing 93 | 2 | 2 | ||||||||
MIRT666976 | PHAX | phosphorylated adaptor for RNA export | 2 | 2 | ||||||||
MIRT683247 | WFDC6 | WAP four-disulfide core domain 6 | 2 | 2 | ||||||||
MIRT688424 | DNAL1 | dynein axonemal light chain 1 | 2 | 2 | ||||||||
MIRT691896 | FBXL18 | F-box and leucine rich repeat protein 18 | 2 | 2 | ||||||||
MIRT701616 | MYO1B | myosin IB | 2 | 2 | ||||||||
MIRT702141 | MAP3K1 | mitogen-activated protein kinase kinase kinase 1 | 2 | 2 | ||||||||
MIRT704403 | CTPS1 | CTP synthase 1 | 2 | 2 | ||||||||
MIRT719515 | RAB10 | RAB10, member RAS oncogene family | 2 | 2 |
miRNA-Drug Resistance Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||
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