pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol CDK19   
Synonyms CDC2L6, CDK11, bA346C16.3
Description cyclin dependent kinase 19
Transcript NM_015076   
Expression
Putative miRNA Targets on CDK19
3'UTR of CDK19
(miRNA target sites are highlighted)
>CDK19|NM_015076|3'UTR
   1 CCAGCTCCCGTTGGGCCAGGCCAGCCCAGCCCAGAGCACAGGCTCCAGCAATATGTCTGCATTGAAAAGAACCAAAAAAA
  81 TGCAAACTATGATGCCATTTAAAACTCATACACATGGGAGGAAAACCTTATATACTGAGCATTGTGCAGGACTGATAGCT
 161 CTTCTTTATTGACTTAAAGAAGATTCTTGTGAAGTTTCCCCAGCACCCCTTCCCTGCATGTGTTCCATTGTGACTTCTCT
 241 GATAAAGCGTCTGATCTAATCCCAGCACTTCTGTAACCTTCAGCATTTCTTTGAAGGATTTCCTGGTGCACCTTTCTCAT
 321 GCTGTAGCAATCACTATGGTTTATCTTTTCAAAGCTCTTTTAATAGGATTTTAATGTTTTAGAAACAGGATTCCAGTGGT
 401 GTATAGTTTTATACTTCATGAACTGATTTAGCAACACAGGTAAAAATGCACCTTTTAAAGCACTACGTTTTCACAGACAA
 481 TAACTGTTCTGCTCATGGAAGTCTTAAACAGAAACTGTTACTGTCCCAAAGTACTTTACTATTACGTTCGTATTTATCTA
 561 GTTTCAGGGAAGGTCTAATAAAAAGACAAGCGGTGGGACAGAGGGAACCTACAACCAAAAACTGCCTAGATCTTTGCAGT
 641 TATGTGCTTTATGCCACGAAGAACTGAAGTATGTGGTAATTTTTATAGAATCATTCATATGGAACTGAGTTCCCAGCATC
 721 ATCTTATTCTGAATAGCATTCAGTAATTAAGAATTACAATTTTAACCTTCATGTAGCTAAGTCTACCTTAAAAAGGGTTT
 801 CAAGAGCTTTGTACAGTCTCGATGGCCCACACCAAAACGCTGAAGAGAGTAACAACTGCACTAGGATTTCTGTAAGGAGT
 881 AATTTTGATCAAAAGACGTGTTACTTCCCTTTGAAGGAAAAGTTTTTAGTGTGTATTGTACATAAAGTCGGCTTCTCTAA
 961 AGAACCATTGGTTTCTTCACATCTGGGTCTGCGTGAGTAACTTTCTTGCATAATCAAGGTTACTCAAGTAGAAGCCTGAA
1041 AATTAATCTGCTTTTAAAATAAAGAGCAGTGTTCTCCATTCGTATTTGTATTAGATATAGAGTGACTATTTTTAAAGCAT
1121 GTTAAAAATTTAGGTTTTATTCATGTTTAAAGTATGTATTATGTATGCATAATTTTGCTGTTGTTACTGAAACTTAATTC
1201 TATCAAGAATCTTTTTCATTGCACTGAATGATTTCTTTTGCCCCTAGGAGAAAACTTAATAATTGTGCCTAAAAACTATG
1281 GGCGGATAGTATAAGACTATACTAGACAAAGTGAATATTTGCATTTCCATTATCTATGAATTAGTGGCTGAGTTCTTTCT
1361 TAGCTGCTTTAAGGAGCCCCTCACTCCCCAGAGTCAAAAGGAAATGTAAAAACTTAGAGCTCCCATTGTAATGTAAGGGG
1441 CAAGAAATTTGTGTTCTTCTGAATGCTACTAGCAGCACCAGCCTTGTTTTAAATGTTTTCTTGAGCTAGAAGAAATAGCT
1521 GATTATTGTATATGCAAATTACATGCATTTTTAAAAACTATTCTTTCTGAACTTATCTACCTGGTTATGATACTGTGGGT
1601 CCATACACAAGTAAAATAAGATTAGACAGAAGCCAGTATACATTTTGCACTATTGATGTGATACTGTAGCCAGCCAGGAC
1681 CTTACTGATCTCAGCATAATAATGCTCACTAATAATGAAGTCTGCATAGTGACACTCATCAAGACTGAAGATGAAGCAGG
1761 TTACGTGCTCCATTGGAAGGAGTTTCTGATAGTCTCCTGCTGTTTTACCCCTTCCATTTTTTAAAATAAGAAATTAGCAG
1841 CCCTCTGCATAATGTAGCTGCCTATATGCAGTTTTATCCTGTGCCCTAAAGCCTCACTGTCCAGAGCTGTTGGTCATCAG
1921 ATGCTTATTGCACCCTCACCATGTGCCTGGTGCCCTGCTGGGTAGAGAACACAGAGGACAGGGCATACTTCTTGTCCTTA
2001 AGGAGCTTGTGATCTGTGACAGTAAGCCCTCCTGGGATGTCTGTGCCATGTGATTGACTTACAAGTGAAACTGTCTTATA
2081 ATATGAAGGTCTTTTTGTTTACTTCTAAACCCACTTGGGTAGTTACTATCCCCAAATCTGTTCTGTAAATAATATTATGG
2161 AAGGGTTTCTATGTCAGTCTACCTTAGAGAAAGCCAGTGATTCAATATCACAAAAGGCATTGACGTATCTTTGAAATGTT
2241 CACAGCAGCCTTTTAACAACAACTGGGTGGTCCTTGTAGGCAGAACATACTCTCCTAAGTGGTTGTAGGAAATTGCAAGG
2321 AAAATAGAAGGTCTGTTCTTGCTCTCAAGGAGGTTACCTTTAATAAAAGAAGACAAACCCAGATAGATATGTAAACCAAA
2401 ATACTATGCCCCTTAATACTTTATAAGCAGCATTGTTAAATAGTTCTTACGCTTATACATTCACAGAACTACCCTGTTTT
2481 CCTTGTATATAATGACTTTTGCTGGCAGAACTGAAATATAAACTGTAAGGGGATTTCGTCAGTTGCTCCCAGTATACAAT
2561 ATCCTCCAGGACATAGCCAGAAATCTCCATTCCACACATGACTGAGTTCCTATCCCTGCACTGGTACTGGCTCTTTTCTC
2641 CTCTTTCCTTGCCTCAGGGTTCGTGCTACCCACTGATTCCCTTTACCCTTAGTAATAATTTTGGATCATTTTCTTTCCTT
2721 TAAAGGGGAACAAAGCCTTTTTTTTTTTTGAGACGGAGTGTTGCTCTGTCACCCAAGCTGGAGTGCAGTGGCACGATCTT
2801 GGCTCACTCCAACCTCCACCTTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACGGGCACGC
2881 ACCACCACGTCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCCTATTGGTCAGGCTGGTCTTGAATTCCTC
2961 ACCTCAGGTCATCCGCCTGTCTCGGCCTCCCGAAGTGCTGGGATTATAGGTGTGAGCCACCGCACCCAGTTGGGAACAAA
3041 GCCTTTTTAACACACGTAAGGGCCCTCAAACCGTGGGACCTCTAAGGAGACCTTTGAAGCTTTTTGAGGGCAAACTTTAC
3121 CTTTGTGGTCCCCAAATGATGGCATTTCTCTTTGAAATTTATTAGATACTGTTATGTCCCCCAAGGGTACAGGAGGGGCA
3201 TCCCTCAGCCTATGGGAACACCCAAACTAGGAGGGGTTATTGACAGGAAGGAATGAATCCAAGTGAAGGCTTTCTGCTCT
3281 TCGTGTTACAAACCAGTTTCAGAGTTAGCTTTCTGGGGAGGTGTGTGTTTGTGAAAGGAATTCAAGTGTTGCAGGACAGA
3361 TGAGCTCAAGGTAAGGTAGCTTTGGCAGCAGGGCTGATACTATGAGGCTGAAACAATCCTTGTGATGAAGTAGATCATGC
3441 AGTGACATACAAAGACCAAGGATTATGTATATTTTTATATCTCTGTGGTTTTGAAACTTTAGTACTTAGAATTTTGGCCT
3521 TCTGCACTACTCTTTTGCTCTTACGAACATAATGGACTCTTAAGAATGGAAAGGGATGACATTTACCTATGTGTGCTGCC
3601 TCATTCCTGGTGAAGCAACTGCTACTTGTTCTCTATGCCTCTAAAATGATGCTGTTTTCTCTGCTAAAGGTAAAAGAAAA
3681 GAAAAAAATAGTTGGAAAATAAGACATGCAACTTGATGTGCTTTTGAGTAAATTTATGCAGCAGAAACTATACAATGAAG
3761 GAAGAATTCTATGGAAATTACAAATCCAAAACTCTATGATGATGTCTTCCTAGGGAGTAGAGAAAGGCAGTGAAATGGCA
3841 GTTAGACCAACAGAGGCTTGAAGGATTCAAGTACAAGTAATATTTTGTATAAAACATAGCAGTTTAGGTCCCCATAATCC
3921 TCAAAAATAGTCACAAATATAACAAAGTTCATTGTTTTAGGGTTTTTAAAAAACGTGTTGTACCTAAGGCCATACTTACT
4001 CTTCTATGCTATCACTGCAAAGGGGTGATATGTATGTATTATATAAAAAAAAAAACCCTTAATGCACTGTTATCTCCTAA
4081 ATATTTAGTAAATTAATACTATTTAATTTTTTTAAAGATTTGTCTGTGTAGACACTAAAAGTATTACACAAAATCTGGAC
4161 TGAAGGTGTCCTTTTTAACAACAATTTAAAGTACTTTTTATATATGTTATGTAGTATATCCTTTCTAAACTGCCTAGTTT
4241 GTATATTCCTATAATTCCTATTTGTGAAGTGTACCTGTTCTTGTCTCTTTTTTCAGTCATTTTCTGCACGCATCCCCCTT
4321 TATATGGTTATAGAGATGACTGTAGCTTTTCGTGCTCCACTGCGAGGTTTGTGCTCAGAGCCGCTGCACCCCAGCGAGGC
4401 CTGCTCCATGGAGTGCAGGACGAGCTACTGCTTTGGAGCGAGGGTTTCCTGCTTTTGAGTTGACCTGACTTCCTTCTTGA
4481 AATGACTGTTAAAACTAAAATAAATTACATTGCATTTATTTTATATTCTTGGTTGAAATAAAATTTAATTGACTTTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gcUCACACUCUA--GUGUGGAGgg 5'
            :|| | : ||  | ||||||  
Target 5' ctGGTCTTGAATTCCTCACCTCag 3'
2944 - 2967 130.00 -11.90
2
miRNA  3' gcucacacucuAGUGUGGAGGg 5'
                     || |||||:| 
Target 5' tcactccaaccTC-CACCTTCc 3'
2804 - 2824 126.00 -12.90
3
miRNA  3' gcUCACACUCUAGUGUGGAGGg 5'
            || || | | ::|||||:: 
Target 5' acAG-GTAAAAATGCACCTTTt 3'
436 - 456 123.00 -9.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30135643 10 COSMIC
COSN31583885 28 COSMIC
COSN30509507 34 COSMIC
COSN31507779 51 COSMIC
COSN30182057 58 COSMIC
COSN19696578 71 COSMIC
COSN30607091 74 COSMIC
COSN31581785 90 COSMIC
COSN31516460 289 COSMIC
COSN31547046 558 COSMIC
COSN31571136 632 COSMIC
COSN31568734 683 COSMIC
COSN6720650 724 COSMIC
COSN31607032 808 COSMIC
COSN31515633 820 COSMIC
COSN30387385 838 COSMIC
COSN31552528 992 COSMIC
COSN31515458 1235 COSMIC
COSN5082117 1300 COSMIC
COSN5617641 1406 COSMIC
COSN31482797 1503 COSMIC
COSN9290499 1509 COSMIC
COSN28201389 1523 COSMIC
COSN31489361 1569 COSMIC
COSN31589534 1587 COSMIC
COSN31533029 1594 COSMIC
COSN30544691 1596 COSMIC
COSN31479815 1655 COSMIC
COSN8493470 1773 COSMIC
COSN14768890 1837 COSMIC
COSN30109683 1847 COSMIC
COSN2840863 1884 COSMIC
COSN5617640 1968 COSMIC
COSN26544877 2039 COSMIC
COSN31602584 2050 COSMIC
COSN29212466 2138 COSMIC
COSN31566146 2217 COSMIC
COSN14904273 2873 COSMIC
COSN7593800 3520 COSMIC
COSN9963871 3739 COSMIC
COSN14727452 3974 COSMIC
COSN26583789 4283 COSMIC
COSN30177231 4298 COSMIC
COSN24910037 4383 COSMIC
COSN24294941 4543 COSMIC
COSN9290498 4551 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776013864 4 dbSNP
rs539810221 7 dbSNP
rs746173091 8 dbSNP
rs112980396 9 dbSNP
rs757754206 10 dbSNP
rs1222109321 11 dbSNP
rs1372707375 14 dbSNP
rs948916514 15 dbSNP
rs199678603 18 dbSNP
rs778179892 20 dbSNP
rs756223912 22 dbSNP
rs762462429 25 dbSNP
rs752848644 26 dbSNP
rs779984672 27 dbSNP
rs373584668 30 dbSNP
rs1299934797 35 dbSNP
rs1339907332 42 dbSNP
rs1359630914 44 dbSNP
rs774897911 48 dbSNP
rs750445033 50 dbSNP
rs1406587267 51 dbSNP
rs1409698406 59 dbSNP
rs757735086 60 dbSNP
rs1347697988 62 dbSNP
rs570847232 64 dbSNP
rs1222057568 69 dbSNP
rs1357431859 81 dbSNP
rs1283103742 82 dbSNP
rs1311222322 84 dbSNP
rs950526035 89 dbSNP
rs982937091 115 dbSNP
rs1336896512 124 dbSNP
rs975834276 161 dbSNP
rs1269511800 170 dbSNP
rs1196985754 176 dbSNP
rs767054669 176 dbSNP
rs1266457609 180 dbSNP
rs1373726225 184 dbSNP
rs1017383130 197 dbSNP
rs930122850 198 dbSNP
rs1371347321 208 dbSNP
rs547941787 209 dbSNP
rs534285641 216 dbSNP
rs773385922 221 dbSNP
rs1403685401 228 dbSNP
rs1055322 229 dbSNP
rs1363119673 241 dbSNP
rs748382313 248 dbSNP
rs80057960 249 dbSNP
rs1339717619 250 dbSNP
rs1227008328 256 dbSNP
rs1291928334 260 dbSNP
rs948752247 263 dbSNP
rs758193808 265 dbSNP
rs954475151 267 dbSNP
rs1030061075 269 dbSNP
rs1188432529 272 dbSNP
rs1363206713 273 dbSNP
rs1449148380 282 dbSNP
rs894683147 295 dbSNP
rs117102226 308 dbSNP
rs182483602 310 dbSNP
rs1021543653 311 dbSNP
rs1011947239 312 dbSNP
rs1157183889 318 dbSNP
rs983026707 319 dbSNP
rs1287544324 320 dbSNP
rs928982920 323 dbSNP
rs1433956623 324 dbSNP
rs922923969 336 dbSNP
rs1469995641 357 dbSNP
rs1226475189 362 dbSNP
rs1269838897 380 dbSNP
rs1201910438 381 dbSNP
rs1489868118 394 dbSNP
rs1268295484 395 dbSNP
rs1317514135 399 dbSNP
rs894384537 407 dbSNP
rs1217654715 419 dbSNP
rs1056226337 420 dbSNP
rs964425849 428 dbSNP
rs1204576173 431 dbSNP
rs1244983410 434 dbSNP
rs1317450644 435 dbSNP
rs1286329156 465 dbSNP
rs1221838227 466 dbSNP
rs1017414137 467 dbSNP
rs1283483576 472 dbSNP
rs1224990933 475 dbSNP
rs1002809745 485 dbSNP
rs1388406346 486 dbSNP
rs1343031328 489 dbSNP
rs907316024 492 dbSNP
rs1032022392 494 dbSNP
rs1407564107 495 dbSNP
rs764928871 509 dbSNP
rs1301997853 515 dbSNP
rs1047107409 517 dbSNP
rs998742317 529 dbSNP
rs1430919815 538 dbSNP
rs907208113 539 dbSNP
rs1225426396 545 dbSNP
rs758206947 545 dbSNP
rs1224285647 549 dbSNP
rs144165833 550 dbSNP
rs894547413 554 dbSNP
rs1038578205 558 dbSNP
rs1233562588 561 dbSNP
rs1430464067 577 dbSNP
rs1038535363 589 dbSNP
rs532792084 591 dbSNP
rs1480968305 592 dbSNP
rs1178792214 600 dbSNP
rs942982227 600 dbSNP
rs563733912 602 dbSNP
rs1412446412 605 dbSNP
rs576117735 617 dbSNP
rs527338051 626 dbSNP
rs1444229926 627 dbSNP
rs1306113908 629 dbSNP
rs1349867331 630 dbSNP
rs1428603274 631 dbSNP
rs1047765283 636 dbSNP
rs934252807 638 dbSNP
rs911468234 650 dbSNP
rs556450892 651 dbSNP
rs1187171830 657 dbSNP
rs1273740951 658 dbSNP
rs1309347595 669 dbSNP
rs1203541982 676 dbSNP
rs745849640 699 dbSNP
rs1243746434 712 dbSNP
rs1213598587 721 dbSNP
rs1202010316 729 dbSNP
rs975701753 732 dbSNP
rs943151389 744 dbSNP
rs1263547568 753 dbSNP
rs1224901849 756 dbSNP
rs1171656960 758 dbSNP
rs910314122 759 dbSNP
rs1320972624 770 dbSNP
rs1411152257 771 dbSNP
rs954329951 772 dbSNP
rs989834250 790 dbSNP
rs1300231647 795 dbSNP
rs561734082 801 dbSNP
rs543410973 803 dbSNP
rs1363501423 804 dbSNP
rs1405524950 806 dbSNP
rs1268889413 807 dbSNP
rs957201311 811 dbSNP
rs1304009657 813 dbSNP
rs1329155995 815 dbSNP
rs1435955307 818 dbSNP
rs923022908 820 dbSNP
rs1430668554 821 dbSNP
rs924433538 827 dbSNP
rs1274072275 832 dbSNP
rs1360749681 833 dbSNP
rs977128099 838 dbSNP
rs1426706055 839 dbSNP
rs1451401765 842 dbSNP
rs967116145 852 dbSNP
rs971338413 853 dbSNP
rs1339109486 864 dbSNP
rs1450998781 870 dbSNP
rs1186091223 872 dbSNP
rs1425167518 897 dbSNP
rs541982260 898 dbSNP
rs1404541612 899 dbSNP
rs1024752388 907 dbSNP
rs1012910747 908 dbSNP
rs576676794 919 dbSNP
rs1296908599 928 dbSNP
rs1383638772 932 dbSNP
rs1248726839 940 dbSNP
rs1282942645 942 dbSNP
rs1021910007 949 dbSNP
rs1011395965 950 dbSNP
rs1286831824 957 dbSNP
rs1465942209 967 dbSNP
rs528788913 968 dbSNP
rs1246814933 978 dbSNP
rs887282911 981 dbSNP
rs1430344680 992 dbSNP
rs1034247723 993 dbSNP
rs147475201 1003 dbSNP
rs907180022 1010 dbSNP
rs1158895929 1015 dbSNP
rs901410797 1021 dbSNP
rs1184650998 1026 dbSNP
rs546100868 1028 dbSNP
rs1039902866 1035 dbSNP
rs1047137904 1046 dbSNP
rs1448798964 1048 dbSNP
rs1320151606 1050 dbSNP
rs994253570 1054 dbSNP
rs191759520 1055 dbSNP
rs1038975184 1067 dbSNP
rs1205321013 1068 dbSNP
rs1459848914 1072 dbSNP
rs1054138296 1081 dbSNP
rs554199366 1082 dbSNP
rs1240431328 1087 dbSNP
rs924480883 1089 dbSNP
rs1408679999 1097 dbSNP
rs763542447 1103 dbSNP
rs911474480 1130 dbSNP
rs1308695200 1143 dbSNP
rs1267098250 1145 dbSNP
rs977265163 1158 dbSNP
rs1201648041 1165 dbSNP
rs1253509682 1179 dbSNP
rs1441729194 1180 dbSNP
rs1051311892 1182 dbSNP
rs188649494 1189 dbSNP
rs932974378 1200 dbSNP
rs755768167 1201 dbSNP
rs568496463 1202 dbSNP
rs1413820491 1223 dbSNP
rs971750949 1225 dbSNP
rs917185335 1227 dbSNP
rs922969109 1231 dbSNP
rs151338573 1235 dbSNP
rs183240054 1240 dbSNP
rs1170854445 1242 dbSNP
rs1178858576 1243 dbSNP
rs1317837756 1246 dbSNP
rs1401611241 1253 dbSNP
rs569087696 1255 dbSNP
rs1392420174 1256 dbSNP
rs1331462238 1260 dbSNP
rs967559939 1269 dbSNP
rs914308621 1278 dbSNP
rs1016911217 1279 dbSNP
rs1450872187 1281 dbSNP
rs1284378509 1283 dbSNP
rs990407353 1284 dbSNP
rs1005678027 1291 dbSNP
rs1378943227 1297 dbSNP
rs1253687515 1299 dbSNP
rs1195947634 1301 dbSNP
rs1343684289 1301 dbSNP
rs201908334 1309 dbSNP
rs5879077 1311 dbSNP
rs1026261047 1312 dbSNP
rs552497419 1320 dbSNP
rs1269374140 1326 dbSNP
rs148773159 1333 dbSNP
rs144315117 1334 dbSNP
rs1462557850 1336 dbSNP
rs1170627794 1338 dbSNP
rs971287156 1339 dbSNP
rs1369218607 1340 dbSNP
rs1429712958 1348 dbSNP
rs1370207902 1360 dbSNP
rs768707615 1377 dbSNP
rs994118295 1384 dbSNP
rs1330215096 1389 dbSNP
rs1442500683 1410 dbSNP
rs1276206439 1412 dbSNP
rs888813844 1417 dbSNP
rs1204378233 1422 dbSNP
rs1177365400 1425 dbSNP
rs755674873 1437 dbSNP
rs1481412600 1440 dbSNP
rs546939830 1444 dbSNP
rs898600239 1447 dbSNP
rs1054049030 1453 dbSNP
rs935775054 1456 dbSNP
rs752393765 1458 dbSNP
rs192336044 1459 dbSNP
rs1190558833 1464 dbSNP
rs1388432118 1465 dbSNP
rs767831740 1468 dbSNP
rs1359584111 1469 dbSNP
rs917048419 1470 dbSNP
rs1293360656 1471 dbSNP
rs1294538768 1474 dbSNP
rs1244452765 1475 dbSNP
rs991413296 1478 dbSNP
rs937234249 1490 dbSNP
rs1362421073 1493 dbSNP
rs1227486854 1495 dbSNP
rs1315636459 1497 dbSNP
rs909906574 1518 dbSNP
rs1219077283 1530 dbSNP
rs1264681256 1533 dbSNP
rs984124333 1557 dbSNP
rs759963278 1575 dbSNP
rs879598212 1576 dbSNP
rs977200698 1581 dbSNP
rs1051260526 1582 dbSNP
rs1371444161 1583 dbSNP
rs1307717664 1584 dbSNP
rs1405594992 1590 dbSNP
rs1164473573 1595 dbSNP
rs1364764422 1599 dbSNP
rs373604414 1601 dbSNP
rs561789959 1606 dbSNP
rs1322145036 1607 dbSNP
rs774790102 1608 dbSNP
rs1433691559 1638 dbSNP
rs1165337816 1640 dbSNP
rs767025013 1641 dbSNP
rs1381214716 1648 dbSNP
rs186327373 1660 dbSNP
rs1311684165 1666 dbSNP
rs1018388741 1681 dbSNP
rs1041427694 1690 dbSNP
rs894045277 1691 dbSNP
rs1032670724 1710 dbSNP
rs1204352090 1730 dbSNP
rs999879937 1731 dbSNP
rs541546538 1733 dbSNP
rs945707988 1734 dbSNP
rs773477597 1737 dbSNP
rs1251611129 1748 dbSNP
rs914320393 1755 dbSNP
rs1157475587 1756 dbSNP
rs989881588 1762 dbSNP
rs1456411457 1764 dbSNP
rs144320990 1765 dbSNP
rs1055617804 1773 dbSNP
rs562673074 1780 dbSNP
rs546159836 1782 dbSNP
rs180946367 1783 dbSNP
rs1241590488 1786 dbSNP
rs1315552614 1793 dbSNP
rs1286271506 1795 dbSNP
rs367972419 1796 dbSNP
rs927170146 1808 dbSNP
rs1287924258 1812 dbSNP
rs554211850 1814 dbSNP
rs540594911 1815 dbSNP
rs574724314 1817 dbSNP
rs1280760123 1822 dbSNP
rs2691197 1837 dbSNP
rs1301380882 1839 dbSNP
rs973165530 1840 dbSNP
rs537948722 1844 dbSNP
rs962706538 1848 dbSNP
rs1484349462 1860 dbSNP
rs1180427301 1865 dbSNP
rs1017435013 1866 dbSNP
rs569145344 1882 dbSNP
rs1007012638 1896 dbSNP
rs776897968 1899 dbSNP
rs1029864198 1902 dbSNP
rs998335424 1908 dbSNP
rs768702556 1909 dbSNP
rs1426576975 1911 dbSNP
rs902786045 1927 dbSNP
rs1389909240 1928 dbSNP
rs1042633836 1935 dbSNP
rs945711839 1941 dbSNP
rs892762936 1943 dbSNP
rs1174804715 1945 dbSNP
rs80158403 1947 dbSNP
rs1289423590 1948 dbSNP
rs1371056134 1954 dbSNP
rs1431586066 1959 dbSNP
rs1455116138 1962 dbSNP
rs1054527925 1963 dbSNP
rs937141740 1973 dbSNP
rs965428378 1980 dbSNP
rs1276827884 1981 dbSNP
rs927034192 1983 dbSNP
rs981267073 1989 dbSNP
rs949865743 1994 dbSNP
rs1344882573 1995 dbSNP
rs1203664008 1998 dbSNP
rs1274295594 2000 dbSNP
rs1452552103 2000 dbSNP
rs918509000 2002 dbSNP
rs1224324051 2006 dbSNP
rs1248073474 2012 dbSNP
rs745663007 2018 dbSNP
rs189753934 2020 dbSNP
rs962943794 2021 dbSNP
rs1431056919 2028 dbSNP
rs1451194540 2031 dbSNP
rs538948048 2034 dbSNP
rs1000147039 2036 dbSNP
rs1369949375 2041 dbSNP
rs1432138589 2061 dbSNP
rs1405728152 2063 dbSNP
rs1325333630 2068 dbSNP
rs1263000839 2072 dbSNP
rs1016968575 2073 dbSNP
rs985851182 2078 dbSNP
rs954132755 2081 dbSNP
rs1267912554 2097 dbSNP
rs1297502424 2107 dbSNP
rs1029728409 2110 dbSNP
rs1230358635 2126 dbSNP
rs1288207544 2130 dbSNP
rs1449468208 2135 dbSNP
rs1212701130 2137 dbSNP
rs1248038377 2155 dbSNP
rs1465860624 2160 dbSNP
rs1186192320 2165 dbSNP
rs566794797 2170 dbSNP
rs1281682584 2171 dbSNP
rs749199446 2178 dbSNP
rs1164735284 2179 dbSNP
rs1411381070 2182 dbSNP
rs1055522077 2184 dbSNP
rs11756279 2187 dbSNP
rs1432972373 2197 dbSNP
rs1296145733 2203 dbSNP
rs1341554789 2204 dbSNP
rs112160556 2205 dbSNP
rs1282728981 2219 dbSNP
rs541971296 2220 dbSNP
rs1229474372 2223 dbSNP
rs1054158380 2224 dbSNP
rs1330838123 2225 dbSNP
rs1319634491 2248 dbSNP
rs1442879267 2255 dbSNP
rs1470175868 2255 dbSNP
rs527320093 2259 dbSNP
rs1235454805 2261 dbSNP
rs1474754395 2262 dbSNP
rs758731510 2264 dbSNP
rs1414429077 2265 dbSNP
rs1455873097 2272 dbSNP
rs929873119 2276 dbSNP
rs1403020227 2287 dbSNP
rs1398239716 2291 dbSNP
rs905641459 2311 dbSNP
rs1407813716 2312 dbSNP
rs918633489 2317 dbSNP
rs574967667 2324 dbSNP
rs146329157 2330 dbSNP
rs944156535 2341 dbSNP
rs911322735 2342 dbSNP
rs1195886535 2347 dbSNP
rs1259567646 2349 dbSNP
rs1448211740 2359 dbSNP
rs918456568 2362 dbSNP
rs1201742669 2363 dbSNP
rs1276398526 2370 dbSNP
rs531297465 2373 dbSNP
rs1485331424 2388 dbSNP
rs1182584750 2390 dbSNP
rs1037263930 2406 dbSNP
rs941315466 2407 dbSNP
rs1485589215 2409 dbSNP
rs1181367663 2422 dbSNP
rs1261464651 2425 dbSNP
rs1378498175 2435 dbSNP
rs1200115756 2436 dbSNP
rs1467640214 2450 dbSNP
rs562683293 2450 dbSNP
rs1375344514 2457 dbSNP
rs752093159 2458 dbSNP
rs185834248 2459 dbSNP
rs1225418650 2463 dbSNP
rs532472148 2464 dbSNP
rs1305845869 2472 dbSNP
rs141981887 2476 dbSNP
rs1331384548 2481 dbSNP
rs1543992 2483 dbSNP
rs1272605390 2488 dbSNP
rs138718283 2492 dbSNP
rs967363376 2496 dbSNP
rs1205802112 2508 dbSNP
rs1276428673 2509 dbSNP
rs561116360 2515 dbSNP
rs1195073589 2518 dbSNP
rs1013941212 2519 dbSNP
rs1384760534 2523 dbSNP
rs1196793577 2524 dbSNP
rs1394578480 2527 dbSNP
rs541436459 2530 dbSNP
rs771384049 2537 dbSNP
rs577252936 2538 dbSNP
rs1461785182 2547 dbSNP
rs1011479905 2556 dbSNP
rs1001248124 2558 dbSNP
rs544699335 2559 dbSNP
rs1388176539 2562 dbSNP
rs1169141635 2571 dbSNP
rs1323242042 2571 dbSNP
rs888312213 2573 dbSNP
rs1228589332 2584 dbSNP
rs1048699125 2588 dbSNP
rs958340830 2598 dbSNP
rs1427331710 2599 dbSNP
rs994120355 2603 dbSNP
rs1390079680 2614 dbSNP
rs1164818173 2620 dbSNP
rs1489558352 2629 dbSNP
rs1208296687 2637 dbSNP
rs1034325632 2642 dbSNP
rs1222523275 2648 dbSNP
rs1252378231 2653 dbSNP
rs558589274 2659 dbSNP
rs1040940645 2662 dbSNP
rs944063229 2663 dbSNP
rs1236098953 2676 dbSNP
rs1165870203 2681 dbSNP
rs905495611 2707 dbSNP
rs911184969 2736 dbSNP
rs1459063696 2744 dbSNP
rs1322023980 2750 dbSNP
rs1435164947 2750 dbSNP
rs879868984 2750 dbSNP
rs1187022580 2751 dbSNP
rs1359734817 2751 dbSNP
rs1381599491 2754 dbSNP
rs575285295 2755 dbSNP
rs1242421545 2763 dbSNP
rs1272766737 2766 dbSNP
rs1045368832 2783 dbSNP
rs1330135773 2786 dbSNP
rs558746165 2794 dbSNP
rs936750114 2798 dbSNP
rs896895956 2805 dbSNP
rs1036889622 2808 dbSNP
rs1194125792 2809 dbSNP
rs941166425 2814 dbSNP
rs141765019 2823 dbSNP
rs978647937 2824 dbSNP
rs1422422491 2825 dbSNP
rs1164723309 2834 dbSNP
rs1246655740 2842 dbSNP
rs1416678811 2853 dbSNP
rs747548761 2856 dbSNP
rs1160681312 2869 dbSNP
rs370961646 2872 dbSNP
rs2817802 2873 dbSNP
rs373975135 2875 dbSNP
rs922637120 2878 dbSNP
rs796393149 2879 dbSNP
rs1381320353 2880 dbSNP
rs1412675708 2882 dbSNP
rs1351297030 2885 dbSNP
rs536544272 2888 dbSNP
rs568090569 2889 dbSNP
rs1210985541 2896 dbSNP
rs375442353 2908 dbSNP
rs992371620 2913 dbSNP
rs1482587147 2917 dbSNP
rs1187635604 2918 dbSNP
rs959702097 2924 dbSNP
rs1407420459 2931 dbSNP
rs966814037 2932 dbSNP
rs1183899394 2936 dbSNP
rs913959031 2937 dbSNP
rs989685056 2938 dbSNP
rs958420164 2946 dbSNP
rs1034005595 2958 dbSNP
rs547836804 2960 dbSNP
rs1033945578 2961 dbSNP
rs1417983193 2963 dbSNP
rs1176215778 2967 dbSNP
rs1360792829 2968 dbSNP
rs1432817381 2969 dbSNP
rs537943485 2974 dbSNP
rs1370945904 2975 dbSNP
rs970943296 2982 dbSNP
rs181267020 2983 dbSNP
rs1013855717 2984 dbSNP
rs60069055 2991 dbSNP
rs1015729942 2992 dbSNP
rs1412348492 3003 dbSNP
rs532374039 3010 dbSNP
rs1470743968 3011 dbSNP
rs888238257 3018 dbSNP
rs1365721174 3020 dbSNP
rs1215947363 3021 dbSNP
rs59730719 3022 dbSNP
rs896965676 3025 dbSNP
rs932590628 3027 dbSNP
rs1426691419 3032 dbSNP
rs1452435098 3036 dbSNP
rs1172931065 3040 dbSNP
rs138753568 3055 dbSNP
rs9386926 3056 dbSNP
rs1049716450 3061 dbSNP
rs945336643 3062 dbSNP
rs1295309013 3065 dbSNP
rs773849653 3066 dbSNP
rs561335167 3072 dbSNP
rs765289640 3073 dbSNP
rs936764033 3087 dbSNP
rs1298971467 3091 dbSNP
rs1344997060 3092 dbSNP
rs926815508 3093 dbSNP
rs1287715935 3098 dbSNP
rs936782635 3100 dbSNP
rs1436814737 3104 dbSNP
rs1221866468 3113 dbSNP
rs903948744 3115 dbSNP
rs980890838 3127 dbSNP
rs1192519584 3132 dbSNP
rs1248538058 3135 dbSNP
rs1351184875 3136 dbSNP
rs1165893527 3172 dbSNP
rs1280888778 3174 dbSNP
rs1226202766 3175 dbSNP
rs945538548 3177 dbSNP
rs1167164989 3178 dbSNP
rs1392623912 3184 dbSNP
rs1440231657 3186 dbSNP
rs761964630 3191 dbSNP
rs1349263066 3192 dbSNP
rs918057709 3199 dbSNP
rs1303222738 3203 dbSNP
rs1429263872 3204 dbSNP
rs1406302285 3207 dbSNP
rs1230444614 3209 dbSNP
rs544250626 3212 dbSNP
rs970975800 3225 dbSNP
rs752192438 3226 dbSNP
rs776507542 3236 dbSNP
rs1025156637 3239 dbSNP
rs1332280540 3242 dbSNP
rs992465693 3245 dbSNP
rs575348577 3250 dbSNP
rs1401605512 3254 dbSNP
rs768949364 3261 dbSNP
rs190164812 3264 dbSNP
rs1241510729 3267 dbSNP
rs1157146806 3277 dbSNP
rs1472994582 3279 dbSNP
rs545078709 3282 dbSNP
rs952386116 3288 dbSNP
rs573150040 3295 dbSNP
rs1472392193 3304 dbSNP
rs367846327 3317 dbSNP
rs553285064 3321 dbSNP
rs145868317 3326 dbSNP
rs888195253 3329 dbSNP
rs972472787 3339 dbSNP
rs1477110786 3341 dbSNP
rs1399395860 3346 dbSNP
rs1028190291 3365 dbSNP
rs1341643468 3367 dbSNP
rs1220784015 3370 dbSNP
rs1019398818 3382 dbSNP
rs1447314982 3389 dbSNP
rs1008139509 3392 dbSNP
rs149043951 3402 dbSNP
rs901109346 3403 dbSNP
rs1206659232 3405 dbSNP
rs1202907386 3407 dbSNP
rs35656940 3412 dbSNP
rs1040956563 3414 dbSNP
rs1283581716 3418 dbSNP
rs1212700508 3419 dbSNP
rs945407488 3425 dbSNP
rs1255163217 3433 dbSNP
rs1474969382 3434 dbSNP
rs1220421095 3437 dbSNP
rs760833754 3440 dbSNP
rs1364913773 3447 dbSNP
rs1028310302 3452 dbSNP
rs1158111082 3459 dbSNP
rs1001290970 3461 dbSNP
rs1274724703 3465 dbSNP
rs1416678503 3470 dbSNP
rs903812979 3488 dbSNP
rs1375231244 3500 dbSNP
rs1410902843 3501 dbSNP
rs4276543 3509 dbSNP
rs114885911 3519 dbSNP
rs1337208616 3530 dbSNP
rs1236210456 3531 dbSNP
rs1278473682 3536 dbSNP
rs865861511 3540 dbSNP
rs774177801 3544 dbSNP
rs926708463 3545 dbSNP
rs1485219667 3549 dbSNP
rs1398812879 3550 dbSNP
rs1205669530 3562 dbSNP
rs1407089780 3563 dbSNP
rs980923383 3564 dbSNP
rs949525743 3573 dbSNP
rs868745382 3574 dbSNP
rs1455916187 3575 dbSNP
rs1056627229 3576 dbSNP
rs1395077628 3581 dbSNP
rs938272454 3587 dbSNP
rs537807719 3593 dbSNP
rs1190493915 3596 dbSNP
rs972249222 3604 dbSNP
rs185286169 3614 dbSNP
rs552346196 3622 dbSNP
rs74927541 3624 dbSNP
rs77990092 3635 dbSNP
rs952594342 3641 dbSNP
rs1331183070 3642 dbSNP
rs919571351 3649 dbSNP
rs1301142693 3651 dbSNP
rs1347111711 3652 dbSNP
rs1464302371 3660 dbSNP
rs754651648 3665 dbSNP
rs753614069 3666 dbSNP
rs1263330627 3675 dbSNP
rs972928836 3676 dbSNP
rs1309869531 3681 dbSNP
rs961151641 3689 dbSNP
rs1195451233 3690 dbSNP
rs1019430209 3697 dbSNP
rs546428083 3698 dbSNP
rs1543991 3706 dbSNP
rs1252882990 3709 dbSNP
rs996697403 3711 dbSNP
rs1028198918 3717 dbSNP
rs1296111947 3724 dbSNP
rs1172923742 3725 dbSNP
rs1000755568 3728 dbSNP
rs1460092307 3739 dbSNP
rs1434787648 3740 dbSNP
rs968488180 3741 dbSNP
rs1384034634 3744 dbSNP
rs965175193 3750 dbSNP
rs1338889699 3751 dbSNP
rs1019548205 3755 dbSNP
rs1370095739 3756 dbSNP
rs144872213 3764 dbSNP
rs1010087436 3769 dbSNP
rs892368402 3771 dbSNP
rs202222620 3782 dbSNP
rs1054219434 3785 dbSNP
rs1226493605 3787 dbSNP
rs1266233923 3789 dbSNP
rs1000848662 3793 dbSNP
rs1211855833 3796 dbSNP
rs1272654861 3796 dbSNP
rs1171207382 3797 dbSNP
rs1465700813 3804 dbSNP
rs1188807727 3811 dbSNP
rs1260343628 3812 dbSNP
rs760585879 3815 dbSNP
rs1418073765 3818 dbSNP
rs905297922 3838 dbSNP
rs1162100067 3841 dbSNP
rs1045093153 3855 dbSNP
rs1393098697 3856 dbSNP
rs1002392841 3860 dbSNP
rs1290542396 3868 dbSNP
rs149853215 3872 dbSNP
rs1381414888 3882 dbSNP
rs1293716530 3885 dbSNP
rs1049787705 3889 dbSNP
rs1243539329 3894 dbSNP
rs930903871 3899 dbSNP
rs918124471 3912 dbSNP
rs1266383832 3928 dbSNP
rs1329930155 3930 dbSNP
rs1482070673 3931 dbSNP
rs919625717 3932 dbSNP
rs1036524623 3934 dbSNP
rs1036681896 3939 dbSNP
rs939795674 3940 dbSNP
rs940968940 3945 dbSNP
rs777783826 3947 dbSNP
rs1273061711 3951 dbSNP
rs1416787473 3957 dbSNP
rs4269406 3960 dbSNP
rs1419127492 3963 dbSNP
rs12216071 3967 dbSNP
rs13220055 3974 dbSNP
rs1360543601 3975 dbSNP
rs765725672 3976 dbSNP
rs564936439 3980 dbSNP
rs9386925 3981 dbSNP
rs1412778858 3989 dbSNP
rs1312486940 3994 dbSNP
rs1374395376 3995 dbSNP
rs953887461 4006 dbSNP
rs1378691307 4010 dbSNP
rs1299000120 4016 dbSNP
rs1235673126 4021 dbSNP
rs1411691576 4029 dbSNP
rs921088494 4034 dbSNP
rs528540059 4040 dbSNP
rs1306041978 4042 dbSNP
rs1429028440 4043 dbSNP
rs1385863731 4044 dbSNP
rs75284235 4045 dbSNP
rs559900270 4046 dbSNP
rs1480774890 4050 dbSNP
rs1405186357 4052 dbSNP
rs967970545 4052 dbSNP
rs1021400905 4054 dbSNP
rs1174183776 4055 dbSNP
rs1009582520 4056 dbSNP
rs1312094042 4056 dbSNP
rs1396877080 4056 dbSNP
rs34488411 4056 dbSNP
rs61570809 4056 dbSNP
rs1296456637 4059 dbSNP
rs1372693025 4064 dbSNP
rs960675137 4073 dbSNP
rs1412583817 4076 dbSNP
rs542826437 4078 dbSNP
rs574292356 4081 dbSNP
rs921025047 4087 dbSNP
rs905396827 4088 dbSNP
rs1206194010 4092 dbSNP
rs1230892144 4093 dbSNP
rs975122957 4103 dbSNP
rs1049226874 4114 dbSNP
rs1193774988 4114 dbSNP
rs200321443 4114 dbSNP
rs995520904 4117 dbSNP
rs965125339 4124 dbSNP
rs1419968815 4130 dbSNP
rs1411517851 4133 dbSNP
rs1036994417 4138 dbSNP
rs939691410 4138 dbSNP
rs754728950 4144 dbSNP
rs1461999187 4146 dbSNP
rs1328037718 4148 dbSNP
rs1019485921 4149 dbSNP
rs912194506 4151 dbSNP
rs1204993174 4170 dbSNP
rs1271072092 4171 dbSNP
rs1050834682 4175 dbSNP
rs932400850 4185 dbSNP
rs1490652211 4188 dbSNP
rs1009382884 4193 dbSNP
rs921117284 4194 dbSNP
rs1213730047 4200 dbSNP
rs547029875 4200 dbSNP
rs979273341 4206 dbSNP
rs968254876 4211 dbSNP
rs1242690482 4216 dbSNP
rs1476256830 4219 dbSNP
rs1184600783 4227 dbSNP
rs1419018609 4241 dbSNP
rs557404927 4243 dbSNP
rs913836829 4255 dbSNP
rs1243028469 4294 dbSNP
rs1321527891 4295 dbSNP
rs1307914725 4296 dbSNP
rs1230474850 4298 dbSNP
rs1348634983 4299 dbSNP
rs956853019 4306 dbSNP
rs10624 4307 dbSNP
rs1392386030 4309 dbSNP
rs1032230153 4310 dbSNP
rs544123098 4312 dbSNP
rs1405690581 4313 dbSNP
rs575351092 4314 dbSNP
rs1295264480 4315 dbSNP
rs538255208 4316 dbSNP
rs988426180 4317 dbSNP
rs1329139339 4324 dbSNP
rs1233527804 4333 dbSNP
rs905162184 4336 dbSNP
rs141083843 4351 dbSNP
rs946225110 4352 dbSNP
rs1013662929 4357 dbSNP
rs1473371534 4358 dbSNP
rs969442707 4363 dbSNP
rs1213320999 4364 dbSNP
rs538740188 4382 dbSNP
rs780630607 4383 dbSNP
rs1190329459 4388 dbSNP
rs1416038579 4391 dbSNP
rs1480500258 4393 dbSNP
rs897966707 4394 dbSNP
rs1410749264 4400 dbSNP
rs11754935 4401 dbSNP
rs1399490239 4403 dbSNP
rs1317992927 4408 dbSNP
rs940839302 4417 dbSNP
rs373293904 4420 dbSNP
rs566413531 4421 dbSNP
rs111427254 4440 dbSNP
rs930971256 4446 dbSNP
rs1015183119 4465 dbSNP
rs763051531 4469 dbSNP
rs1352675681 4472 dbSNP
rs181495289 4478 dbSNP
rs1488324561 4484 dbSNP
rs1261679795 4501 dbSNP
rs1212820291 4509 dbSNP
rs1009094805 4513 dbSNP
rs536090016 4518 dbSNP
rs1182557314 4526 dbSNP
rs1050700135 4529 dbSNP
rs943800534 4532 dbSNP
rs1288018781 4549 dbSNP
rs1158559760 4551 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 23097.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gcucacacucuAGUGUGGAGGg 5'
                     || |||||:| 
Target 5' -----ccaaccUC-CACCUUCc 3'
1 - 16
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_015076 | 3UTR | CACCUUCCAGGUUCAAGUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACGGGCACGCACCACCACGUCUGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCACCCUAUUGGUCAGGCUGGUCUUGAAUUCCUCACCUCAGGUCAUCCGCCUGUCUCGGCCUCCCGAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000368911.3 | 3UTR | CCAACCUCCACCUUCCAGGUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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