miRTarBase - #MIRT525342


—
pre-miRNA Information
pre-miRNA hsa-mir-2117   
Genomic Coordinates chr17: 43444806 - 43444885
Description Homo sapiens miR-2117 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2117
Sequence 51| UGUUCUCUUUGCCAAGGACAG |71
Evidence Experimental
Experiments 454
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1255384593 12 dbSNP
rs1227862494 14 dbSNP
rs1458444919 16 dbSNP
rs1309101018 17 dbSNP
rs1159219853 18 dbSNP
rs1344029538 19 dbSNP
rs747666550 20 dbSNP
rs770495894 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TUBGCP4   
Synonyms 76P, GCP-4, GCP4, Grip76, MCCRP3
Description tubulin gamma complex associated protein 4
Transcript NM_014444   
Expression
Putative miRNA Targets on TUBGCP4
3'UTR of TUBGCP4
(miRNA target sites are highlighted)		 
>TUBGCP4|NM_014444|3'UTR
   1 AAATTTCTGGCTCATAAATTGAAATAACAGCCACGTTCCCAAGGTTGTAACAGAAGATTCAAAACATCCCATTCTAGCCA
  81 CACACAAATAAATATCTGCGGCTTAGTGATAGGACTCTACCTTTTCTCCTAGAAGCAGTTACTGAACATCCAGGAGTACA
 161 ACTCCTTCCCATCATTCCCATGTGGAAGGGTCTCTCCCATCAAGGAGAACATGTGGCATCTCTGATCCTTTACATTGAGA
 241 ACATTTGTTGGATATGTTCATTTATTCAATAGTCATTTATTGAGCACCTACTACGTACCTTGGTACTGTTCAAGCTGTGG
 321 GAGATACAGCGGTAAACAAACAATATAGAGCAGAAAGTTAAATATTTTATGGTTCATATGTGAAAAAGTAATTATGTTTA
 401 TAAATAGACTAACTGCTGGATGTTACCACCAAGTAAGAAAGCAACAGGTAAGATAGGCTTTCTCTCTCCCTATACCAAGT
 481 AATTTATACCTACACAGATTGGGCAATTCTAGCTAATGAAAATATACTTAAAAGTATTTCTTAGGCCGGGCATGGTGGCT
 561 CACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGACCAA
 641 CATGATGAAACCTCGATTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCATGTGCCTGTAATCCCAGCTACTCAG
 721 GAGGCTGAGACAGGAGAATTGCTTGAACCTGGGAAGCAGACGCTGCAGTGAGCTGAGATTGTGCCATTGCATTCCAGCCC
 801 GGGCAACAAGAGCGAAATTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGTATTATTCTCCAAGAAAAAGGTCCTTAA
 881 GAAAAAATTGAGATCAAGTTGTTAGATTTTTAAATACTGAAGATTGCAGGCCCAATTACCCATCTTACACAAACCATAGG
 961 GGTTGAAGTTATCTTAATATGGCCCAGCCATCACTGGTAATCAATATTCATATCAGTGTAAGTAAAAAGAAATATTCACT
1041 GAACAACGCCCTCCAAACTGAAAAAGAATGCAGTGTTCTGGCATCAGGTTATAGTCACTGCATCTGGTTTTCATCACTAC
1121 ATATTCTACACACACTGGGAAGCTCTGACAACTTATTCCCTGCTATTATCAACTAAAGATCACCCTTTCTACTGCTGTCT
1201 CTGGAGCAGGAGCTGGCAAACTATGGCCTGCTGTCTGTTTTTGTACAGTTTTACTGAAACACAGCCATGCCCATTTGTTT
1281 ACTCATTGTCTATGGTTGCTTTCATGCCCTCACAGCAAAGGCGAGTAGTTGTGATGGATCAAATGGCCCACAAAGCCTGA
1361 AATATTTACTCTTTGACCCTTTACAGAAAAAAACCTTGTTGACCCCTGCTTTAGAGAATGAGAAGCCATGCAGGGATCAG
1441 TGATGCCAGAGGAAGGGAAGGAACTGCTTCCAGCTATTGTGACAATAATAATAATAATAATATTGGGTCTTTGACTAGAA
1521 CGTGTAACATTTCCAGGTGTTCTCACTTGTGCTTCCCATGTTTATCTTACGGAAGGTCATTCCATCAAGCTTATGGTCAC
1601 TGTCCCTTCATGGCAGTTGGTCCTTTCGTTCTCCCTTTAGCTCTAAGAGTTGGGGAGTACCCACAGGTGAGCTGTGATCT
1681 CAGCTCAGAGAGAGAGCATGAGGTCTTTTTTAACTGTCAGGAAACAGAGCTGTGCCCAATTCCACTCAACTTTTGGCACA
1761 ACTGTTAATCTGGGCCTTCACCTACCTTAAACTGAGTTTCTGCAAGCATAGCATTTTAGACACCCTGGAATAACCTTTTG
1841 GGAATGATGCCACAGAATAAAGTTCACTCTTAACTTTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacaGGAACCGUUUCUCUUGu 5'
              || |  |||:|||||| 
Target 5' tctcCCAT--CAAGGAGAACa 3'
 193 - 211 141.00 -15.10
2 
miRNA  3' gacAGGAACCGUUUCUCUUGu 5'
             |||||  ||  |||||| 
Target 5' tgaTCCTTTACATTGAGAACa 3'
 223 - 243 134.00 -15.60
3 
miRNA  3' gacaGGAACCGUUUCUCUUGu 5'
              || || :  ||||||: 
Target 5' tgacCCCTGCTTTAGAGAATg 3'
 1400 - 1420 133.00 -9.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
770785 3794 ClinVar
COSN30455163 41 COSMIC
COSN30135819 43 COSMIC
COSN5266652 48 COSMIC
COSN30177214 54 COSMIC
COSN31597568 70 COSMIC
COSN30120932 124 COSMIC
COSN31574729 133 COSMIC
COSN30118736 172 COSMIC
COSN21875930 174 COSMIC
COSN31527331 202 COSMIC
COSN23425688 1022 COSMIC
COSN2469883 1312 COSMIC
COSN30607754 1431 COSMIC
COSN30640845 1453 COSMIC
COSN23046874 1480 COSMIC
COSN19730388 1522 COSMIC
COSN25600250 1881 COSMIC
COSN31492610 2075 COSMIC
COSN30480894 2128 COSMIC
COSN13622145 2134 COSMIC
COSM9331397 2172 COSMIC
COSM8313278 2177 COSMIC
COSM6806564 2185 COSMIC
COSM6265786 2190 COSMIC
COSM8875606 2197 COSMIC
COSM270378 2201 COSMIC
COSM1230117 2222 COSMIC
COSM2188260 2222 COSMIC
COSM9535910 2228 COSMIC
COSM1664643 2234 COSMIC
COSM6806516 2238 COSMIC
COSM165090 2256 COSMIC
COSM5054301 2269 COSMIC
COSM1230113 2277 COSMIC
COSM4772828 2292 COSMIC
COSM6522023 2312 COSMIC
COSM4735433 2315 COSMIC
COSM223757 2318 COSMIC
COSM21756 2322 COSMIC
COSM3769863 2324 COSMIC
COSM9257961 2324 COSMIC
COSM4054829 2348 COSMIC
COSM7830770 2358 COSMIC
COSM961967 2358 COSMIC
COSN28661638 2412 COSMIC
COSN30563858 2716 COSMIC
COSM6290375 2765 COSMIC
COSM9743497 2788 COSMIC
COSM8577634 2792 COSMIC
COSM7991825 2798 COSMIC
COSM9390550 2805 COSMIC
COSM433904 2836 COSMIC
COSM4891046 2854 COSMIC
COSM9236875 2855 COSMIC
COSM9137278 2858 COSMIC
COSM5980739 2868 COSMIC
COSM4917018 2874 COSMIC
COSN24390364 2952 COSMIC
COSN23772369 3256 COSMIC
COSN22173639 3335 COSMIC
COSN9625000 3417 COSMIC
COSN19521268 3517 COSMIC
COSN1176906 3593 COSMIC
COSN22631895 3649 COSMIC
COSM3969118 3694 COSMIC
COSM1678410 3696 COSMIC
COSM8311788 3706 COSMIC
COSM7703235 3718 COSMIC
COSM3786516 3725 COSMIC
COSM5054303 3725 COSMIC
COSM356791 3732 COSMIC
COSM8087725 3738 COSMIC
COSM4054830 3741 COSMIC
COSM9234457 3761 COSMIC
COSM6277392 3764 COSMIC
COSM6806536 3771 COSMIC
COSM396919 3772 COSMIC
COSM6001644 3781 COSMIC
COSM7711168 3787 COSMIC
COSM8336782 3799 COSMIC
COSM961968 3814 COSMIC
COSM3816129 3818 COSMIC
COSM1230114 3820 COSMIC
COSM4390743 3821 COSMIC
COSM1478137 3825 COSMIC
COSM6806548 3832 COSMIC
COSM167296 3837 COSMIC
COSM4393406 3838 COSMIC
COSM2188275 3851 COSMIC
COSM7923533 3851 COSMIC
COSM4753948 3852 COSMIC
COSM1640246 3862 COSMIC
COSM5226335 3881 COSMIC
COSM3816130 4471 COSMIC
COSM7560101 4477 COSMIC
COSM6905060 4493 COSMIC
COSM6142116 4506 COSMIC
COSM6388042 4507 COSMIC
COSM9370184 4510 COSMIC
COSM4974833 4511 COSMIC
COSM5886898 4529 COSMIC
COSM4054831 4530 COSMIC
COSM1608394 4546 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs924219339 7 dbSNP
rs935621091 14 dbSNP
rs1051263267 17 dbSNP
rs1446010120 20 dbSNP
rs1340110602 26 dbSNP
rs774577548 26 dbSNP
rs1458885182 28 dbSNP
rs891315318 29 dbSNP
rs1478050483 31 dbSNP
rs774924452 33 dbSNP
rs761226515 35 dbSNP
rs764545329 36 dbSNP
rs1416324678 37 dbSNP
rs754370038 44 dbSNP
rs1472706110 47 dbSNP
rs3742973 48 dbSNP
rs765596228 49 dbSNP
rs935843355 52 dbSNP
rs759640724 53 dbSNP
rs900136357 59 dbSNP
rs994510026 66 dbSNP
rs1465841189 70 dbSNP
rs1362023927 73 dbSNP
rs1055679436 79 dbSNP
rs1027775332 84 dbSNP
rs529662813 86 dbSNP
rs770991434 86 dbSNP
rs1172960906 88 dbSNP
rs1226387214 90 dbSNP
rs1403821988 93 dbSNP
rs1298571002 95 dbSNP
rs886350738 100 dbSNP
rs531589676 101 dbSNP
rs775445067 106 dbSNP
rs1437737509 110 dbSNP
rs375638043 111 dbSNP
rs1411163922 112 dbSNP
rs1003897749 113 dbSNP
rs1038098787 115 dbSNP
rs1450980822 116 dbSNP
rs766004216 129 dbSNP
rs1316862674 132 dbSNP
rs1187410672 142 dbSNP
rs1234346272 144 dbSNP
rs147581675 159 dbSNP
rs990834691 162 dbSNP
rs1248381826 163 dbSNP
rs1219335903 166 dbSNP
rs568629725 175 dbSNP
rs534520937 178 dbSNP
rs185998688 179 dbSNP
rs1340319827 184 dbSNP
rs772209916 185 dbSNP
rs953748904 186 dbSNP
rs1009181287 202 dbSNP
rs1484054630 204 dbSNP
rs1292267174 205 dbSNP
rs1436417552 208 dbSNP
rs1018938766 210 dbSNP
rs1371518350 211 dbSNP
rs979454347 216 dbSNP
rs967387402 222 dbSNP
rs571058724 232 dbSNP
rs1368307481 236 dbSNP
rs1169390425 240 dbSNP
rs1433233454 252 dbSNP
rs977473104 253 dbSNP
rs1189350793 256 dbSNP
rs923969406 270 dbSNP
rs1252199548 275 dbSNP
rs935582503 277 dbSNP
rs987480724 281 dbSNP
rs1379145360 283 dbSNP
rs1274148080 293 dbSNP
rs957186156 294 dbSNP
rs912706254 296 dbSNP
rs942855454 301 dbSNP
rs949992455 303 dbSNP
rs1045644474 304 dbSNP
rs908189840 312 dbSNP
rs369629331 320 dbSNP
rs540085911 324 dbSNP
rs1454374556 326 dbSNP
rs1370814633 328 dbSNP
rs1370376665 331 dbSNP
rs527520016 332 dbSNP
rs898249102 334 dbSNP
rs1360323249 335 dbSNP
rs1295956526 352 dbSNP
rs1173359521 356 dbSNP
rs996641620 362 dbSNP
rs1373150907 372 dbSNP
rs1412616424 377 dbSNP
rs1184304435 386 dbSNP
rs930416846 395 dbSNP
rs1048710642 396 dbSNP
rs886129049 409 dbSNP
rs1304125903 417 dbSNP
rs1329688671 419 dbSNP
rs111943483 420 dbSNP
rs562904874 428 dbSNP
rs765069811 446 dbSNP
rs1254271408 449 dbSNP
rs192108892 449 dbSNP
rs750227591 453 dbSNP
rs1035363388 454 dbSNP
rs1009539779 455 dbSNP
rs967335526 457 dbSNP
rs576121535 458 dbSNP
rs548265129 459 dbSNP
rs1380870592 461 dbSNP
rs1250828340 464 dbSNP
rs1300784280 465 dbSNP
rs896288410 467 dbSNP
rs547695357 469 dbSNP
rs555364966 474 dbSNP
rs1161219863 476 dbSNP
rs1455602168 500 dbSNP
rs1191686534 505 dbSNP
rs1362937869 507 dbSNP
rs566486895 523 dbSNP
rs763048350 523 dbSNP
rs1254335535 529 dbSNP
rs1269430295 529 dbSNP
rs1183265456 535 dbSNP
rs1465386078 543 dbSNP
rs183936937 548 dbSNP
rs1192794235 549 dbSNP
rs1266603890 554 dbSNP
rs751076063 557 dbSNP
rs968096270 560 dbSNP
rs754460615 566 dbSNP
rs540938440 573 dbSNP
rs563893142 574 dbSNP
rs971271100 583 dbSNP
rs201782382 589 dbSNP
rs1450947219 592 dbSNP
rs45583832 593 dbSNP
rs543256745 597 dbSNP
rs987040914 598 dbSNP
rs1384150430 600 dbSNP
rs145458507 601 dbSNP
rs374064436 602 dbSNP
rs1440554915 608 dbSNP
rs1298805236 621 dbSNP
rs1450361189 623 dbSNP
rs919630383 628 dbSNP
rs1186738718 629 dbSNP
rs1446563863 636 dbSNP
rs531852687 639 dbSNP
rs780737441 643 dbSNP
rs1212202971 652 dbSNP
rs920120399 653 dbSNP
rs548252599 655 dbSNP
rs930392109 657 dbSNP
rs1322376736 658 dbSNP
rs1049512009 659 dbSNP
rs1325388799 671 dbSNP
rs889251989 679 dbSNP
rs530417832 683 dbSNP
rs1467091412 688 dbSNP
rs189188470 696 dbSNP
rs1302316339 700 dbSNP
rs752326368 704 dbSNP
rs1040607446 709 dbSNP
rs768358828 735 dbSNP
rs1049303964 744 dbSNP
rs527931961 745 dbSNP
rs1201593348 748 dbSNP
rs755710639 749 dbSNP
rs1268552575 754 dbSNP
rs548104801 763 dbSNP
rs1484280021 770 dbSNP
rs1056342678 773 dbSNP
rs1276297284 775 dbSNP
rs148910252 788 dbSNP
rs999138672 789 dbSNP
rs540022291 791 dbSNP
rs1032994869 792 dbSNP
rs1423840961 799 dbSNP
rs2444037 801 dbSNP
rs569622098 802 dbSNP
rs1416243653 805 dbSNP
rs1306351572 807 dbSNP
rs1044863412 809 dbSNP
rs1409640619 810 dbSNP
rs1321871782 811 dbSNP
rs903719278 812 dbSNP
rs1295847830 813 dbSNP
rs1000933691 814 dbSNP
rs1031515368 815 dbSNP
rs1380201724 821 dbSNP
rs1230047435 822 dbSNP
rs1250099508 823 dbSNP
rs1436870429 823 dbSNP
rs1278645973 825 dbSNP
rs1228948922 826 dbSNP
rs1262405197 826 dbSNP
rs1320848318 826 dbSNP
rs1330899373 826 dbSNP
rs1491203439 826 dbSNP
rs1158370487 827 dbSNP
rs1189246254 827 dbSNP
rs1209207021 827 dbSNP
rs1237662050 827 dbSNP
rs1242017893 827 dbSNP
rs1277559224 827 dbSNP
rs1282135195 827 dbSNP
rs1405503857 827 dbSNP
rs1410137262 827 dbSNP
rs1450506815 827 dbSNP
rs1459317278 827 dbSNP
rs1459549755 827 dbSNP
rs1466208714 827 dbSNP
rs1473365360 827 dbSNP
rs386382851 827 dbSNP
rs67793488 827 dbSNP
rs769052049 827 dbSNP
rs1222990894 828 dbSNP
rs1291520161 830 dbSNP
rs1334350247 834 dbSNP
rs1232591844 835 dbSNP
rs1268749823 837 dbSNP
rs1286156664 848 dbSNP
rs1356838601 848 dbSNP
rs1213422799 852 dbSNP
rs1244086895 852 dbSNP
rs397934325 852 dbSNP
rs1321308892 853 dbSNP
rs199729883 853 dbSNP
rs1483375288 854 dbSNP
rs1437833948 855 dbSNP
rs1343938017 856 dbSNP
rs865896465 859 dbSNP
rs1318289141 860 dbSNP
rs1406295134 862 dbSNP
rs1183303409 872 dbSNP
rs1164595138 873 dbSNP
rs1442398269 875 dbSNP
rs956694153 877 dbSNP
rs1023059307 880 dbSNP
rs1188624954 883 dbSNP
rs1465914311 884 dbSNP
rs555024415 889 dbSNP
rs971601854 893 dbSNP
rs1008643475 896 dbSNP
rs112790340 913 dbSNP
rs1291804205 916 dbSNP
rs1220456509 918 dbSNP
rs1359017508 922 dbSNP
rs1298689390 923 dbSNP
rs1230698441 931 dbSNP
rs1474621147 934 dbSNP
rs1360013541 936 dbSNP
rs1160510075 946 dbSNP
rs1270073066 947 dbSNP
rs981239471 949 dbSNP
rs1015416741 950 dbSNP
rs1301693380 953 dbSNP
rs761372275 958 dbSNP
rs961262887 962 dbSNP
rs1429752846 963 dbSNP
rs964277070 964 dbSNP
rs973982850 965 dbSNP
rs1399267087 971 dbSNP
rs771477635 980 dbSNP
rs975688051 983 dbSNP
rs1359897759 997 dbSNP
rs1197002778 998 dbSNP
rs1490145244 999 dbSNP
rs1450464335 1000 dbSNP
rs1207583924 1006 dbSNP
rs754815159 1006 dbSNP
rs532543669 1007 dbSNP
rs1272378899 1010 dbSNP
rs1305794596 1010 dbSNP
rs572012056 1011 dbSNP
rs1354879137 1016 dbSNP
rs540676048 1017 dbSNP
rs1351541645 1018 dbSNP
rs984525089 1019 dbSNP
rs907617817 1020 dbSNP
rs903376409 1027 dbSNP
rs934876966 1033 dbSNP
rs1221789216 1036 dbSNP
rs779346325 1037 dbSNP
rs1479958209 1038 dbSNP
rs1252308913 1040 dbSNP
rs1283287900 1040 dbSNP
rs1184526178 1042 dbSNP
rs1054727192 1048 dbSNP
rs893092775 1049 dbSNP
rs940489000 1056 dbSNP
rs1012924283 1067 dbSNP
rs1314060056 1075 dbSNP
rs192057034 1078 dbSNP
rs1212547126 1079 dbSNP
rs577542187 1082 dbSNP
rs1223464793 1089 dbSNP
rs183189526 1092 dbSNP
rs1485033924 1096 dbSNP
rs1330195969 1099 dbSNP
rs907279022 1102 dbSNP
rs146489780 1105 dbSNP
rs1392713773 1127 dbSNP
rs917608805 1134 dbSNP
rs1370713314 1140 dbSNP
rs1254527477 1142 dbSNP
rs947954900 1146 dbSNP
rs1448088686 1175 dbSNP
rs1015361037 1176 dbSNP
rs1407684274 1179 dbSNP
rs1174127382 1181 dbSNP
rs1469229413 1183 dbSNP
rs961211246 1184 dbSNP
rs1161001335 1187 dbSNP
rs1837960 1191 dbSNP
rs1416568038 1195 dbSNP
rs1182710953 1197 dbSNP
rs903656047 1198 dbSNP
rs1462671983 1202 dbSNP
rs1001114097 1207 dbSNP
rs953802951 1211 dbSNP
rs1465757090 1212 dbSNP
rs1375104738 1213 dbSNP
rs1052317547 1218 dbSNP
rs892538184 1222 dbSNP
rs1008340239 1225 dbSNP
rs1237335085 1227 dbSNP
rs1316741849 1231 dbSNP
rs912247871 1231 dbSNP
rs1228560965 1233 dbSNP
rs1384277430 1236 dbSNP
rs752942949 1236 dbSNP
rs965107508 1242 dbSNP
rs977855577 1243 dbSNP
rs1389280236 1247 dbSNP
rs1290602893 1249 dbSNP
rs1309941891 1250 dbSNP
rs1451328902 1253 dbSNP
rs1019610586 1255 dbSNP
rs1334127446 1263 dbSNP
rs1344409416 1264 dbSNP
rs542310669 1267 dbSNP
rs1837959 1268 dbSNP
rs1278936546 1283 dbSNP
rs1027250015 1289 dbSNP
rs952869951 1290 dbSNP
rs983350643 1293 dbSNP
rs1264442793 1312 dbSNP
rs775591396 1314 dbSNP
rs1485721882 1315 dbSNP
rs962085720 1321 dbSNP
rs140975909 1323 dbSNP
rs1222690992 1330 dbSNP
rs547845974 1332 dbSNP
rs750576051 1339 dbSNP
rs1399736933 1340 dbSNP
rs1244559900 1343 dbSNP
rs564748503 1344 dbSNP
rs1332989196 1346 dbSNP
rs1234239047 1348 dbSNP
rs947736717 1349 dbSNP
rs980621298 1350 dbSNP
rs1274324639 1351 dbSNP
rs925190662 1352 dbSNP
rs907235571 1354 dbSNP
rs1383887750 1358 dbSNP
rs1293910470 1360 dbSNP
rs936637252 1360 dbSNP
rs1208605366 1363 dbSNP
rs1363941834 1363 dbSNP
rs1426380443 1363 dbSNP
rs533689445 1370 dbSNP
rs1430465112 1371 dbSNP
rs761012073 1372 dbSNP
rs780167834 1373 dbSNP
rs550364789 1376 dbSNP
rs1452972134 1377 dbSNP
rs1199200063 1379 dbSNP
rs1376552696 1385 dbSNP
rs892322762 1385 dbSNP
rs1476777956 1387 dbSNP
rs944082228 1388 dbSNP
rs1428452602 1393 dbSNP
rs1381417034 1394 dbSNP
rs1419637954 1395 dbSNP
rs1251133263 1396 dbSNP
rs1296662377 1399 dbSNP
rs1393410785 1404 dbSNP
rs1387546504 1408 dbSNP
rs1041166279 1413 dbSNP
rs1481223418 1413 dbSNP
rs1323193621 1414 dbSNP
rs1329600565 1416 dbSNP
rs1242346855 1417 dbSNP
rs1252559519 1419 dbSNP
rs899801465 1420 dbSNP
rs1325774261 1423 dbSNP
rs1354249146 1426 dbSNP
rs796641710 1427 dbSNP
rs1239423555 1431 dbSNP
rs1258723987 1433 dbSNP
rs867052879 1434 dbSNP
rs1358260740 1437 dbSNP
rs1210033552 1441 dbSNP
rs1266178755 1443 dbSNP
rs1415436320 1446 dbSNP
rs1449535571 1448 dbSNP
rs760303390 1456 dbSNP
rs996854546 1458 dbSNP
rs1410668544 1464 dbSNP
rs187124120 1465 dbSNP
rs1398650318 1480 dbSNP
rs1007246836 1484 dbSNP
rs1027272188 1484 dbSNP
rs201419832 1484 dbSNP
rs370624625 1484 dbSNP
rs1268665431 1496 dbSNP
rs1027025689 1498 dbSNP
rs977803217 1499 dbSNP
rs1409492622 1500 dbSNP
rs1338231070 1501 dbSNP
rs1263659531 1504 dbSNP
rs1321105976 1505 dbSNP
rs1175882781 1512 dbSNP
rs1282408685 1514 dbSNP
rs768993178 1522 dbSNP
rs1442726158 1523 dbSNP
rs1327147196 1525 dbSNP
rs888687014 1525 dbSNP
rs1390868465 1535 dbSNP
rs138274771 1537 dbSNP
rs1339220723 1538 dbSNP
rs1468703001 1560 dbSNP
rs138616933 1562 dbSNP
rs368214513 1562 dbSNP
rs1471400421 1563 dbSNP
rs141888590 1568 dbSNP
rs960252866 1569 dbSNP
rs991841646 1571 dbSNP
rs976095190 1572 dbSNP
rs1205415876 1574 dbSNP
rs968986000 1577 dbSNP
rs1459911047 1581 dbSNP
rs1262503218 1594 dbSNP
rs1224097189 1595 dbSNP
rs1228668343 1596 dbSNP
rs1271622728 1597 dbSNP
rs980398680 1601 dbSNP
rs1277951507 1602 dbSNP
rs925002545 1603 dbSNP
rs1336848176 1611 dbSNP
rs1317272249 1624 dbSNP
rs936567899 1628 dbSNP
rs191815602 1629 dbSNP
rs150205757 1639 dbSNP
rs138703885 1648 dbSNP
rs1383291293 1650 dbSNP
rs1156412038 1668 dbSNP
rs943862649 1670 dbSNP
rs1041112443 1672 dbSNP
rs899913869 1675 dbSNP
rs1385537568 1676 dbSNP
rs938689509 1677 dbSNP
rs1442280563 1679 dbSNP
rs1242426832 1680 dbSNP
rs1216437252 1684 dbSNP
rs1212440700 1687 dbSNP
rs577478015 1687 dbSNP
rs1281891280 1688 dbSNP
rs1204715336 1693 dbSNP
rs1252747225 1694 dbSNP
rs536955291 1696 dbSNP
rs773176867 1697 dbSNP
rs1317516072 1698 dbSNP
rs1195552244 1700 dbSNP
rs897242719 1705 dbSNP
rs1271238668 1706 dbSNP
rs1382192441 1706 dbSNP
rs1371583973 1711 dbSNP
rs1318094502 1722 dbSNP
rs996030200 1726 dbSNP
rs932754888 1733 dbSNP
rs1048211227 1735 dbSNP
rs1163919136 1739 dbSNP
rs1414350110 1751 dbSNP
rs199574328 1751 dbSNP
rs1462948894 1755 dbSNP
rs889637591 1758 dbSNP
rs1323879286 1759 dbSNP
rs1476358527 1763 dbSNP
rs1240344603 1774 dbSNP
rs556829218 1777 dbSNP
rs1393432895 1782 dbSNP
rs1048860210 1784 dbSNP
rs1490464225 1786 dbSNP
rs1006780266 1793 dbSNP
rs1319838774 1797 dbSNP
rs568266984 1803 dbSNP
rs766440370 1810 dbSNP
rs1273816020 1823 dbSNP
rs774304918 1823 dbSNP
rs1216780523 1826 dbSNP
rs1338010589 1835 dbSNP
rs900799010 1837 dbSNP
rs1405905682 1842 dbSNP
rs1225986981 1848 dbSNP
rs45626239 1854 dbSNP
rs1402721849 1858 dbSNP
rs1030709042 1859 dbSNP
rs867211206 1863 dbSNP
rs1273152199 1869 dbSNP
rs1411218894 1869 dbSNP
rs1417261378 1870 dbSNP
rs1330190887 1871 dbSNP
rs1480613720 1872 dbSNP
rs1015858889 1881 dbSNP
rs1029027933 1882 dbSNP
rs562196437 1886 dbSNP
rs1207280874 1889 dbSNP
rs34242279 1891 dbSNP
rs879566050 1891 dbSNP
rs2242067 1892 dbSNP
rs2242068 1893 dbSNP
rs969097779 1898 dbSNP
rs1224696266 1901 dbSNP
rs1223341277 1904 dbSNP
rs145601219 1904 dbSNP
rs980513319 1904 dbSNP
rs1032400927 1905 dbSNP
rs1259693015 1906 dbSNP
rs918615231 1910 dbSNP
rs1352286268 1915 dbSNP
rs1470262525 1923 dbSNP
rs931395613 1923 dbSNP
rs1474296919 1924 dbSNP
rs564488696 1926 dbSNP
rs1173977073 1934 dbSNP
rs1432420170 1936 dbSNP
rs1417120830 1939 dbSNP
rs988431301 1944 dbSNP
rs913823905 1945 dbSNP
rs1160099003 1946 dbSNP
rs202017703 1952 dbSNP
rs1204800672 1959 dbSNP
rs965329304 1968 dbSNP
rs1261886575 1972 dbSNP
rs1203400658 1975 dbSNP
rs942531164 1977 dbSNP
rs1307204893 1979 dbSNP
rs1381289731 1984 dbSNP
rs1334457712 1990 dbSNP
rs976572941 1997 dbSNP
rs1040938362 2006 dbSNP
rs1370458547 2014 dbSNP
rs901084759 2019 dbSNP
rs1408210612 2024 dbSNP
rs1452810560 2024 dbSNP
rs1334663125 2030 dbSNP
rs1465314412 2033 dbSNP
rs1161468361 2038 dbSNP
rs1345596449 2038 dbSNP
rs1412417471 2042 dbSNP
rs12079 2046 dbSNP
rs537417236 2047 dbSNP
rs1417570198 2050 dbSNP
rs1379980617 2053 dbSNP
rs1293158208 2054 dbSNP
rs1446563346 2058 dbSNP
rs999473901 2058 dbSNP
rs1241534870 2061 dbSNP
rs921126343 2063 dbSNP
rs1200409942 2065 dbSNP
rs932702498 2068 dbSNP
rs1048489514 2085 dbSNP
rs1486376003 2085 dbSNP
rs1217423752 2087 dbSNP
rs909844846 2095 dbSNP
rs1350486449 2096 dbSNP
rs1246037857 2097 dbSNP
rs1312778429 2098 dbSNP
rs374057034 2103 dbSNP
rs893482411 2114 dbSNP
rs1290398776 2118 dbSNP
rs759792821 2120 dbSNP
rs1238252596 2122 dbSNP
rs767657427 2124 dbSNP
rs775832167 2125 dbSNP
rs370609293 2126 dbSNP
rs533628364 2128 dbSNP
rs374968939 2130 dbSNP
rs778921711 2133 dbSNP
rs745505124 2134 dbSNP
rs771674565 2136 dbSNP
rs1376329867 2139 dbSNP
rs1445925083 2141 dbSNP
rs775038399 2146 dbSNP
rs1426575758 2149 dbSNP
rs760060223 2152 dbSNP
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rs1245183769 2154 dbSNP
rs768231795 2158 dbSNP
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rs1429646922 2166 dbSNP
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rs371521709 2168 dbSNP
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rs1488193973 2171 dbSNP
rs1200209660 2175 dbSNP
rs1258121350 2178 dbSNP
rs750843540 2179 dbSNP
rs545814609 2181 dbSNP
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rs781427855 2194 dbSNP
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rs753824742 2207 dbSNP
rs1381178101 2218 dbSNP
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rs754224762 2263 dbSNP
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rs1407001815 2282 dbSNP
rs746684077 2283 dbSNP
rs1200447833 2296 dbSNP
rs768085656 2297 dbSNP
rs776188194 2299 dbSNP
rs762293392 2302 dbSNP
rs1423123951 2303 dbSNP
rs1168976570 2307 dbSNP
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rs1360206265 2605 dbSNP
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rs566676584 3210 dbSNP
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rs990824614 3216 dbSNP
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rs1049409483 3310 dbSNP
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rs1017272841 3328 dbSNP
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rs900075602 3332 dbSNP
rs1256617660 3349 dbSNP
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rs1355957305 3386 dbSNP
rs774026240 3393 dbSNP
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rs1341643300 3407 dbSNP
rs765965578 3426 dbSNP
rs1177004979 3428 dbSNP
rs1394724281 3430 dbSNP
rs1395853036 3430 dbSNP
rs1024128835 3434 dbSNP
rs1171651963 3435 dbSNP
rs1029649866 3437 dbSNP
rs1381658265 3439 dbSNP
rs1156709239 3441 dbSNP
rs558274830 3445 dbSNP
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rs1438979126 3450 dbSNP
rs1238020157 3459 dbSNP
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rs1001595343 3472 dbSNP
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rs1356219409 3487 dbSNP
rs1286526182 3492 dbSNP
rs1340250917 3492 dbSNP
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rs960594306 3499 dbSNP
rs1330419354 3500 dbSNP
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rs992057749 3502 dbSNP
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rs1214671133 3562 dbSNP
rs1275970061 3573 dbSNP
rs976239551 3575 dbSNP
rs542953222 3576 dbSNP
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rs45628934 3579 dbSNP
rs934206055 3588 dbSNP
rs1436588393 3606 dbSNP
rs1051357648 3609 dbSNP
rs1403517680 3611 dbSNP
rs892427031 3612 dbSNP
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rs528140607 3614 dbSNP
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rs1265152823 3681 dbSNP
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rs375326449 3698 dbSNP
rs760287636 3703 dbSNP
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rs1172680861 3714 dbSNP
rs1394943390 3716 dbSNP
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rs1381837015 3752 dbSNP
rs1316546234 3755 dbSNP
rs1333076705 3756 dbSNP
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rs1302776154 3762 dbSNP
rs759034574 3770 dbSNP
rs1316454427 3771 dbSNP
rs1232072474 3773 dbSNP
rs1358232143 3774 dbSNP
rs780546857 3787 dbSNP
rs61757239 3794 dbSNP
rs1213655367 3800 dbSNP
rs768935265 3809 dbSNP
rs1259171833 3817 dbSNP
rs1452989830 3823 dbSNP
rs781428222 3829 dbSNP
rs368366606 3831 dbSNP
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rs1370142353 3833 dbSNP
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rs745781646 3838 dbSNP
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rs1169949685 3857 dbSNP
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rs775435044 3869 dbSNP
rs150764275 3871 dbSNP
rs1038081557 3874 dbSNP
rs908899319 3879 dbSNP
rs897057833 3880 dbSNP
rs1438591275 3883 dbSNP
rs746714412 3887 dbSNP
rs1336304440 3893 dbSNP
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rs45490398 3896 dbSNP
rs374117172 3903 dbSNP
rs974507984 3905 dbSNP
rs1045525591 3907 dbSNP
rs1213991846 3908 dbSNP
rs761443778 3910 dbSNP
rs1466782046 3911 dbSNP
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rs1239268086 3916 dbSNP
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rs1394903341 3941 dbSNP
rs879047878 3943 dbSNP
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rs945648125 3955 dbSNP
rs957353185 3967 dbSNP
rs1011988440 3972 dbSNP
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rs1434144631 3994 dbSNP
rs138999915 4001 dbSNP
rs967609289 4010 dbSNP
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rs1055145925 4019 dbSNP
rs1182793075 4023 dbSNP
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rs1218538964 4027 dbSNP
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rs1238781774 4033 dbSNP
rs896286704 4035 dbSNP
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rs1286083474 4053 dbSNP
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rs910961113 4084 dbSNP
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rs1361461827 4096 dbSNP
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rs1484612612 4178 dbSNP
rs1192796960 4188 dbSNP
rs571744958 4199 dbSNP
rs964744706 4214 dbSNP
rs1323483940 4216 dbSNP
rs188397832 4221 dbSNP
rs1001324267 4225 dbSNP
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rs1341346737 4230 dbSNP
rs1055671062 4237 dbSNP
rs893201033 4245 dbSNP
rs1400921715 4249 dbSNP
rs1319935434 4255 dbSNP
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rs772071351 4274 dbSNP
rs1294580432 4281 dbSNP
rs954478559 4284 dbSNP
rs1348687530 4287 dbSNP
rs1164655499 4296 dbSNP
rs557274346 4300 dbSNP
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rs1020685094 4343 dbSNP
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rs1398883967 4348 dbSNP
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rs1260408311 4361 dbSNP
rs1191311952 4362 dbSNP
rs1489422783 4365 dbSNP
rs1294395006 4374 dbSNP
rs1271263581 4375 dbSNP
rs1357920586 4376 dbSNP
rs867815745 4382 dbSNP
rs1399100000 4383 dbSNP
rs1318342146 4384 dbSNP
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rs752135261 4388 dbSNP
rs1326120981 4390 dbSNP
rs754724534 4390 dbSNP
rs1390814549 4391 dbSNP
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rs1158490355 4396 dbSNP
rs903198388 4397 dbSNP
rs1361354899 4400 dbSNP
rs748032531 4405 dbSNP
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rs980106895 4406 dbSNP
rs755313240 4407 dbSNP
rs200034359 4412 dbSNP
rs1199917398 4415 dbSNP
rs748388735 4416 dbSNP
rs1345325447 4418 dbSNP
rs756337514 4418 dbSNP
rs777797466 4420 dbSNP
rs202137327 4426 dbSNP
rs1258667705 4428 dbSNP
rs1486182961 4436 dbSNP
rs138398416 4444 dbSNP
rs1415885856 4449 dbSNP
rs775344886 4461 dbSNP
rs746921977 4462 dbSNP
rs1372632691 4464 dbSNP
rs1192968497 4474 dbSNP
rs768497502 4477 dbSNP
rs569154010 4480 dbSNP
rs1055090839 4482 dbSNP
rs1296419356 4484 dbSNP
rs776351312 4499 dbSNP
rs1415116232 4510 dbSNP
rs143892737 4514 dbSNP
rs1396166141 4525 dbSNP
rs1222651230 4531 dbSNP
rs765024907 4532 dbSNP
rs769885709 4533 dbSNP
rs1355360949 4534 dbSNP
rs201081678 4535 dbSNP
rs397711844 4535 dbSNP
rs56813954 4535 dbSNP
rs745916761 4535 dbSNP
rs772237042 4535 dbSNP
rs775574768 4535 dbSNP
rs202074096 4536 dbSNP
rs773031644 4537 dbSNP
rs949497938 4540 dbSNP
rs762505165 4543 dbSNP
rs75465233 4546 dbSNP
rs752038307 4547 dbSNP
rs767900840 4548 dbSNP
rs553235434 4554 dbSNP
rs973870372 4558 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 27229.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_014444 | 3UTR | CAUCAAGGAGAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000564079.1 | 3UTR | CAUUUGUUGGAUAUGUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
50 hsa-miR-2117 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080059 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT253245 ZNF264 zinc finger protein 264 2 4
MIRT279706 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT359344 TMEM167A transmembrane protein 167A 2 2
MIRT465598 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT479860 CCDC6 coiled-coil domain containing 6 2 2
MIRT512413 KIAA0391 KIAA0391 2 2
MIRT525342 TUBGCP4 tubulin gamma complex associated protein 4 2 2
MIRT528092 UCHL3 ubiquitin C-terminal hydrolase L3 2 2
MIRT529254 TRIM4 tripartite motif containing 4 2 4
MIRT550782 VAV3 vav guanine nucleotide exchange factor 3 2 2
MIRT554467 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT560164 ZNF286A zinc finger protein 286A 2 2
MIRT562613 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT568507 ARF1 ADP ribosylation factor 1 2 2
MIRT571536 ZNF286B zinc finger protein 286B 2 2
MIRT609660 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT612022 PAK6 p21 (RAC1) activated kinase 6 2 8
MIRT615677 NAV2 neuron navigator 2 2 2
MIRT616035 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT617771 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT628757 MX2 MX dynamin like GTPase 2 2 4
MIRT635089 AKIRIN1 akirin 1 2 2
MIRT638261 SIX1 SIX homeobox 1 2 2
MIRT638492 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT639400 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT641791 USP32 ubiquitin specific peptidase 32 2 2
MIRT642309 FPR1 formyl peptide receptor 1 2 2
MIRT645902 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT649701 ZNF175 zinc finger protein 175 2 2
MIRT656848 KLF13 Kruppel like factor 13 2 2
MIRT659911 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 2 2
MIRT667275 NAV1 neuron navigator 1 2 2
MIRT674145 ZNF793 zinc finger protein 793 2 2
MIRT692839 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT698520 TFRC transferrin receptor 2 2
MIRT698731 STX6 syntaxin 6 2 4
MIRT700931 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT706080 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT710008 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT711059 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT711285 PSME3 proteasome activator subunit 3 2 2
MIRT716172 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716761 TRABD2A TraB domain containing 2A 2 2
MIRT718683 FZD2 frizzled class receptor 2 2 2
MIRT719675 SPDYE1 speedy/RINGO cell cycle regulator family member E1 2 2
MIRT721610 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT722188 DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 2 2
MIRT725156 SEC62 SEC62 homolog, preprotein translocation factor 2 2
MIRT725239 PDE1B phosphodiesterase 1B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-2117 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miR-2117 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-2117 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2117 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-2117 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-2117 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-2117 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-2117 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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