Gene Symbol |
SOD2
|
Synonyms |
IPO-B, IPOB, MNSOD, MVCD6, Mn-SOD |
Description |
superoxide dismutase 2 |
Transcript |
NM_000636
|
Other Transcripts |
NM_001024465
,
NM_001024466
|
Expression |
|
Putative miRNA Targets on SOD2 |
|
3'UTR of SOD2 (miRNA target sites are highlighted) |
>SOD2|NM_000636|3'UTR
1 ACCACGATCGTTATGCTGAGTATGTTAAGCTCTTTATGACTGTTTTTGTAGTGGTATAGAGTACTGCAGAATACAGTAAG
81 CTGCTCTATTGTAGCATTTCTTGATGTTGCTTAGTCACTTATTTCATAAACAACTTAATGTTCTGAATAATTTCTTACTA
161 AACATTTTGTTATTGGGCAAGTGATTGAAAATAGTAAATGCTTTGTGTGATTGAATCTGATTGGACATTTTCTTCAGAGA
241 GCTAAATTACAATTGTCATTTATAAAACCATCAAAAATATTCCATCCATATACTTTGGGGACTTGTAGGGATGCCTTTCT
321 AGTCCTATTCTATTGCAGTTATAGAAAATCTAGTCTTTTGCCCCAGTTACTTAAAAATAAAATATTAACACTTTCCCAAG
401 GGAAACACTCGGCTTTCTATAGAAAATTGCACTTTTTGTCGAGTAATCCTCTGCAGTGATACTTCTGGTAGATGTCACCC
481 AGTGGTTTTTGTTAGGTCAAATGTTCCTGTATAGTTTTTGCAAATAGAGCTGTATACTGTTTAAATGTAGCAGGTGAACT
561 GAACTGGGGTTTGCTCACCTGCACAGTAAAGGCAAACTTCAACAGCAAAACTGCAAAAAGGTGGTTTTTGCAGTAGGAGA
641 AAGGAGGATGTTTATTTGCAGGGCGCCAAGCAAGGAGAATTGGGCAGCTCATGCTTGAGACCCAATCTCCATGATGACCT
721 ACAAGCTAGAGTATTTAAAGGCAGTGGTAAATTTCAGGAA AGCAGAAGTTAAAGGCAAAATTGTAAATCAGTCGAGATCG
801 GGTGCCTTCAGGGTGGTATGGCTGTATACCAAAATTGTAAATCACTACATGAAGCTTATATATTGGTTTGGCCTGAAAGG
881 TGAAGTGGGGTAGGCAGGGGGCGGGCTTACAGGTTATGGTGGATTCAAAGACTCCCTGATTTGTGATTGGTTAAGGAAGC
961 AAAGCTTTGTCTAAAAACTTGGGGTCCGCAGAAAGGAACATTAAGGTCTGGCCAGGCCCCTCAGGAAGAAACTGAGAGCA
1041 AAGAATGGAGGTCAGAGTTTAGTCCCTGGTGTTCCCCCTTATCTGACGTCTGTGTGAATCCATTTGGTGGGGGTCTGGGT
1121 TTCTGAAAAGTAGCTCAGGGGCACGTGTTAAGGATGTCTCTAGGTGACTCTAACTTCCCTGGCTATTGTTTGAAACTGTT
1201 ATGACCTTCTTGCTTATCAGCTTGCTGGTTTCCTTCTCGGGGCGAGCTGGGTGCCTGGAGTTTTCGGTGAAGGAAACTCA
1281 AGATTCTCCTTTATTTCTGTGCTTGTGGGAATCCCCCTGGCACACCCCAAAGAGGGGTCCCTGCTCCGTCTCACAGGGAT
1361 CTTTTTGTATATTTGGCTTAGCATCATACATTTGCCATGTTGTTTCATCATCTGCCTAATTTACTGTTTTTGAATATTTC
1441 ATTTGTTTCTAATTGTTACTACAGATAATGCTGGGGTGAGCAACTCTGTGTACATAGGTTTATCTCCTATTGGAATATTT
1521 TCTTTATATAGGCGTTTTTTTTTTTTCTTTTTTTTTGGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGC
1601 GCGACCGGAGCTCACTGCAACCTCCACTTCCCGGGTTCAAGTGATTGTCCCACCTCAGCCTCCTGAATAGCTGGGATTAC
1681 AGGTGCATGCTACCATGCCTGGCTACTTTTTGTATTTTTAGCAGAGACAGGGTTTCACCATGTTGGCCAGGGTGGTCTCG
1761 AACTCCTGACCTCAAGTGATCCGTCTGGCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCTGGCCT
1841 ATATAGGCTTTTTTCTTAAACCTATTTAGTAATGTTTTCCCAAGTTTATTTTTTATTTTTAATTTTTTCCCCAAGTTTAT
1921 TTTTCTATTTTTTTTTCATGGAAAAATGGGGTAACTTAGCAGTTTCAATATTGAAGACTGAAGTTTAAAAAAAATTTAAA
2001 TTCAAGGTACTTTTAAAATTCAGTTAGAAAAGTAGGCTTTAAAAATTATTAGAGACAAGAGTACCAAAGCGGTGTGTGTA
2081 TGTGTGTGTGTGTATGCATGCTTGTGGATTGGAAAAACTTTGGAGACTGATTACTTTTCATTATATATGTGTCACAGTGA
2161 AACAGCTTTTATGTGTCATGTAAGATTACTGCTTGCCTCTCTAAGGAAGGTCGTGACTGTTTAAATAGACGGGCAAGGTG
2241 GAACCTTTTGAAAGATGAGCTTTTGAATATAAGTTGTCTGCTAGATCATGGTTTGTATTGAACTAACAAGGTTTGCAGAT
2321 CTGCTGACTTATATAAAGCTTTTTGATTCCTACTAAGCTTTAAGATTTAAAAAATGTTCAATGTTGAAATTTCTGTGGGG
2401 CTCTATTTTTGCTTTGGCTTTCTGGTGAGAGAGTGAGGAAGCATTCTTTCCTTCACTAAGTTTGTCTTTCTTGTCTTCTG
2481 GATAGATTGATTTTAAGAGACTAAGGGAATTTACAAACTAAAGATTTTAGTCATCTGGTGGAAAAGGAGACTTTAAGATT
2561 GTTTAGGGCTGGGCGGGGTGACTCACATCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGAACACTTGAAGGAGT
2641 TCAAGACCAGCGTGGCCAACGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTGTTTAGCTCTGTTTTTCATAATA
2721 GAAATAGAAAAGGTAAAATTGCTTTTCTTCTGAAAAGAACAAGTATTGTTCATCCAAGAAGGGTTTTTGTGACTGAATCA
2801 GCAGTGCCTGCCCTAGTCATAGCTGTGCTTCAAAAACCTCAGCATGATTAGTGTTGGAGCAAAACAAGGAAGCAAAGCAA
2881 ATACTGTTTTTGAAATTCTATCTGTTGCTTGAACTATTTTGTAATAATTAAACTTTGATGTTGAGAAATCACAACTTTAT
2961 TGTACACTTCATTGCAACTTGAAATTCATGGTCTTAAAGTGAGATTTGAATTTCTATTGAGCGCCTTTAAAAAAGTAATA
3041 CCAAACCATAAAGTTAAAATCTATGTATATTGAGTCATATCTAAAACCACGTATAAACATAAATTGTATTTCCTGTTTTA
3121 ATTCCAGGGGAAGTACTGTTTGGGAAAGCTATTATTAGGTAAATGTTTTACAAATTACTGTTTCTCACTTTCAGTCATAC
3201 CCTAATGATCCCAGCAAGATAATGTCCTGTCTTCTAAGATGTGCATCAAGCCTGGTACATACTGAAAACCCTATAAGGTC
3281 CTGGATAATTTTTGTTTGATTATTCATTGAAGAAACATTTATTTTCCAATTGTGTGAAGTTTTTGACTGTTAATAAAAGA
3361 ATCTGTCAACCATCAAAGAGGTCTGCATTATGCTTGCATGTCAAAAACTTTAAAAATCCTATAATCTTCAAAAAAAAAAA
3441 AAAAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' cgcucucacGCCC--GGGGUCCUc 5'
| || ||:|||||
Target 5' aggtctggcCAGGCCCCTCAGGAa 3'
|
1004 - 1027
|
131.00 |
-17.70 |
2
|
miRNA 3' cgcUCUC---ACG---CCCGGGGUCCuc 5'
|||| ||| | ||||||
Target 5' gacAGAGTCTTGCTCTGTTGCCCAGGct 3'
|
1560 - 1587
|
127.00 |
-18.70 |
3
|
miRNA 3' cgCUCUCA-CGCCCGGGGUCCUc 5'
|: ||| |: :::|||||
Target 5' aaGGCAGTGGTAAATTTCAGGAa 3'
|
738 - 760
|
116.00 |
-12.30 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|