miRTarBase - #MIRT525860


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pre-miRNA Information
pre-miRNA hsa-mir-7849   
Genomic Coordinates chr4: 146408583 - 146408688
Description Homo sapiens miR-7849 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7849-3p
Sequence 64| GACAAUUGUUGAUCUUGGGCCU |85
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1386078731 3 dbSNP
rs144001291 10 dbSNP
rs1334425573 16 dbSNP
rs557644637 20 dbSNP
Putative Targets

Gene Information
Gene Symbol ARL13B   
Synonyms ARL2L1, JBTS8
Description ADP ribosylation factor like GTPase 13B
Transcript NM_001174150   
Other Transcripts NM_001174151 , NM_144996 , NM_182896   
Expression
Putative miRNA Targets on ARL13B
3'UTR of ARL13B
(miRNA target sites are highlighted)		 
>ARL13B|NM_001174150|3'UTR
   1 ACAAGACGTATGGAGGAGTTCTCTTAATATCAGCAAGGTGAACTGGGACATTCTTCTTTCTCAGAAGAAGAAACATCTTG
  81 TAAATTGATGACTGGGGCAAGATAACCATAATAATTTTAGTGAGAAGATTAATACTCAAGGACCTGACTTGATAATTACT
 161 TATTTGTGTTTTTCATGGTTAAAAAAATAAAAGAAGCACAATGACCAGTACATGAAATCAGCATTTGGACCAAATTAGCA
 241 AGATTTACTGTTGACTCTGGTTTATACATCCCCACTCATGAGCATACTTCTGAAGGAAAACTTTACAAAAAGAGCCAATG
 321 GACTCAGCACTTTCTTTACTATTTGTTCAATAGCCTATATTTCTAGATATTAAATATTTTTTGTAAGATATATGCACATA
 401 GAAGGGGGACTTCTAGGAATTTATAACCAAAATTTTAAAACTATTTTTATATTTTTTTAAATCTTTAAAAATTTTAATTA
 481 CTGTGATATTGATTATACACCTTTTTTATAGATGATTTGTTTAAATTATATCTGGAAAATAGAGTTGATTTACTTTCAGA
 561 CATGAACTATACAAACAGGATATATTTATATGGCTTGAGGTATGTTTTGTAATAGCGTTGTTCTTTAAGTGTACATCGTA
 641 ATTTGACCTAATTTAAAAATAATATATTTTCGAAGTAGTAGATTCTCAGATCTTTATTCTAACAATTACATGATTTGAAA
 721 ACAGTACTCAATGAGACTGGAAATACCTTTTGTACCTAAATGTTTTTTAAATTAATCAAAATACATTCTGTGAGATACTA
 801 TTAAAAGTCTCAGTAAAGTCCTATTTTAAAGGTTAGACACTTTCAGAGATCAAGGTGCTCCCTATACTCCCTTGTTCCAT
 881 CAGAAGCTGCAGTGACTCTTTTAGGTGATTCTAATTCTTTCATGCCTTGAAATTAAACTATGAAATTAAAGGCAGAAAAA
 961 CTGGAAAACCTACTGCAGGTCCAGAGACTTCTGTTTTACAACTGGGAAACAGCTTGTGTACTAAAGTAATGAGAATAAAA
1041 ATGTTGGCCCAAAATTACTTTTATAAATAAATAATTCCAAAATAATTTCTTAATTTAAAATGATAGCACTTCTCTTGCAC
1121 TTAAGAATGGCATCCATAAGATTCTGTATTTGGCATTTAGACTAACTTCTAGATGTATATTTTTAATAATAGATTCATAA
1201 TGTTACATTTAATTGAAAACAAACCTTTATATCCAATGAAAATAGTATAAACAGAATGATTTTTATACCACCTTGTTAAG
1281 ATTGGTGCTTTTGGTAACTTGTACTGACACAACAGACATGTGCTAGTATCTGATAACATTAAGTACATTTTATGTCGTTT
1361 AATATAATTATTTACTTTAAAAATTGTACTTCAGAACATCAGATTTTATTCACATTTTTTAACTCACTGAACTTTAATAA
1441 TCAGGTCACCTGTACTCTAGTCAGCACTGTATATATTCTTGGAGTTTGTACATGGGACTTAGCAACCACACTGAGTGAGG
1521 TAAAAGCATTTGATTTCAGATCTAAAATTCGTAACAACCTAAATTTGAGAGGTGGCTGAAATGTGATGAAAAGCAATACG
1601 AAAAGACAATGTAAACTTTGAAAAGGATTTTAGAGGGAAAATTGCATAGCTTTTTGTAACATTTACTTAATTTTAAAACT
1681 AAACTCATACTTTTGCTATCTTTTTAATATTTATCTCGTTTGGGAGTATACGTGTTTTTAAAATTTGTGTTTTCTATCTG
1761 TTTACTATAGTGTAGCTACTGGCTTCATTTAATAAAAATAAATGATTTTGAAATTAAATATAATATAGAATTCACATTTT
1841 ATATAGCTCTCTCAAAAATTAATTTTTATTCCTTAAGCATTTTAAAAACATTTTAAAAAATGTTTTGTAAATCCAGGTGT
1921 ATTTTAACAATTAAATGCCTATTTTGTTATATGTTATACTTTTATTCTTAATTCTGAATTTTGACATTTTCACACAATAA
2001 AAATAATTTATATCAATATTCTGTTTCTCTTTTCAATTGGTAGATTTAAATGATTTCCTTTGGGTAATAAAATAGGTAAA
2081 GATTTTAAAATATGATTATTGAAAAACAGTTTAAATCAGTAGATTAAAATAATGCATTTTTTTGATACTTTACACACAAA
2161 ACTTTTTTCTCTCTGCAAGTTTTTATGTATGTGGGAAAGAATTTGTGATTTTAAATGCAGCTACAAATAGCATTTCACCA
2241 TATGATGTTAGAGGATTTGATGTCTGTCTTGCGTTAAAGCTGTTGGTCAACAGATATGTTTTTATGTATTTAAAAGAGGC
2321 TCTTGTGTGCCTTTATGTGTAAAATGCATATTACGTAGTATACATGATATTGTATGTAACTGACTTCAAATATAAAACTA
2401 TGCATAGAAACAACAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uccGGGUUC---U--AGUUGUUAAcag 5'
             :|||:|   |  |:|||||||   
Target 5' aaaTCCAGGTGTATTTTAACAATTaaa 3'
 1909 - 1935 121.00 -10.52
2 
miRNA  3' uccGGGUUCUAG--------UUGUUAAcag 5'
             :|: |||||        |||||||   
Target 5' gatTCTCAGATCTTTATTCTAACAATTaca 3'
 681 - 710 117.00 -8.40
3 
miRNA  3' uccggGUUCUA-----GUUGUUAACAg 5'
               ||||||     :||:|||| | 
Target 5' tggggCAAGATAACCATAATAATTTTa 3'
 93 - 119 117.00 -8.32
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
346928 1817 ClinVar
COSN26966764 8 COSMIC
COSN30760278 9 COSMIC
COSN19691412 17 COSMIC
COSN26966763 22 COSMIC
COSN30500638 49 COSMIC
COSN31503982 84 COSMIC
COSN20074797 96 COSMIC
COSN4822607 232 COSMIC
COSN9578863 297 COSMIC
COSN25655113 390 COSMIC
COSN20098744 564 COSMIC
COSN22888423 621 COSMIC
COSN28201240 870 COSMIC
COSN9895875 1128 COSMIC
COSN30231304 1228 COSMIC
COSN26499696 1459 COSMIC
COSN7768654 1719 COSMIC
COSN26208802 1850 COSMIC
COSN7717143 1954 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777042478 2 dbSNP
rs377420487 3 dbSNP
rs1422819193 6 dbSNP
rs769876397 8 dbSNP
rs192550354 9 dbSNP
rs767357191 10 dbSNP
rs1419595440 13 dbSNP
rs763512611 17 dbSNP
rs1238328203 19 dbSNP
rs1196294641 21 dbSNP
rs773051308 22 dbSNP
rs370940177 23 dbSNP
rs1320062005 24 dbSNP
rs185653034 24 dbSNP
rs1486753600 32 dbSNP
rs753533317 34 dbSNP
rs754660508 39 dbSNP
rs764756674 40 dbSNP
rs1255716859 45 dbSNP
rs752164205 47 dbSNP
rs188567962 48 dbSNP
rs1025179507 51 dbSNP
rs201268384 63 dbSNP
rs778211409 63 dbSNP
rs28571294 65 dbSNP
rs747355792 66 dbSNP
rs766488499 73 dbSNP
rs1207713206 76 dbSNP
rs969694079 78 dbSNP
rs1401589404 85 dbSNP
rs781712936 88 dbSNP
rs746036529 89 dbSNP
rs770527364 94 dbSNP
rs1245880193 97 dbSNP
rs769919577 98 dbSNP
rs1178829930 107 dbSNP
rs775570272 109 dbSNP
rs1471618534 111 dbSNP
rs773993962 112 dbSNP
rs1159074373 116 dbSNP
rs1418934581 121 dbSNP
rs749390467 125 dbSNP
rs565218394 131 dbSNP
rs773186584 134 dbSNP
rs1455703552 143 dbSNP
rs1443607884 144 dbSNP
rs1300344912 145 dbSNP
rs1348097193 150 dbSNP
rs1227304899 151 dbSNP
rs760435059 156 dbSNP
rs1336544810 164 dbSNP
rs113838761 173 dbSNP
rs1200813094 175 dbSNP
rs1288906822 176 dbSNP
rs1307792409 177 dbSNP
rs1016407788 179 dbSNP
rs1265370965 179 dbSNP
rs1206552826 181 dbSNP
rs1209299895 181 dbSNP
rs759031170 191 dbSNP
rs370306318 195 dbSNP
rs1482684628 197 dbSNP
rs1181599601 199 dbSNP
rs766997155 201 dbSNP
rs1476320435 202 dbSNP
rs967179523 206 dbSNP
rs766125854 217 dbSNP
rs1413535462 220 dbSNP
rs1415079643 232 dbSNP
rs1321079972 233 dbSNP
rs1410827902 241 dbSNP
rs776434631 242 dbSNP
rs1369319342 243 dbSNP
rs1409721383 244 dbSNP
rs759172295 245 dbSNP
rs1356761436 246 dbSNP
rs919043074 249 dbSNP
rs1314175224 256 dbSNP
rs1445399990 258 dbSNP
rs986944481 265 dbSNP
rs1400048653 271 dbSNP
rs1177523314 272 dbSNP
rs886058933 273 dbSNP
rs912410790 274 dbSNP
rs1216176663 276 dbSNP
rs1272171800 280 dbSNP
rs1390728981 284 dbSNP
rs942513634 285 dbSNP
rs1341425377 286 dbSNP
rs1257260688 287 dbSNP
rs1039599307 289 dbSNP
rs764802683 292 dbSNP
rs1444133965 294 dbSNP
rs1347100636 296 dbSNP
rs1185711796 303 dbSNP
rs987157586 317 dbSNP
rs919810994 320 dbSNP
rs931227404 323 dbSNP
rs1231819810 324 dbSNP
rs1278394622 329 dbSNP
rs1049073807 330 dbSNP
rs193069117 331 dbSNP
rs1416486221 333 dbSNP
rs1388684638 334 dbSNP
rs1429700079 335 dbSNP
rs1174771337 336 dbSNP
rs1376758399 342 dbSNP
rs544022690 343 dbSNP
rs1412316614 350 dbSNP
rs1239259846 351 dbSNP
rs561009587 358 dbSNP
rs907370724 364 dbSNP
rs1454703563 365 dbSNP
rs1432428104 374 dbSNP
rs1295154063 377 dbSNP
rs1364140075 378 dbSNP
rs1234932061 379 dbSNP
rs757564877 384 dbSNP
rs1001669493 392 dbSNP
rs530141372 394 dbSNP
rs925770318 399 dbSNP
rs1188057274 405 dbSNP
rs1443949127 423 dbSNP
rs957649692 442 dbSNP
rs1277966543 450 dbSNP
rs368787316 454 dbSNP
rs1011818536 456 dbSNP
rs764630737 458 dbSNP
rs1210772731 459 dbSNP
rs1019977125 464 dbSNP
rs1246607122 473 dbSNP
rs1449174219 475 dbSNP
rs778521144 478 dbSNP
rs1421191980 482 dbSNP
rs1284451115 486 dbSNP
rs1379949759 487 dbSNP
rs1477307941 488 dbSNP
rs1449719380 498 dbSNP
rs1171535200 499 dbSNP
rs1339084458 502 dbSNP
rs1383329738 505 dbSNP
rs1384988276 505 dbSNP
rs967419345 507 dbSNP
rs1402113877 508 dbSNP
rs1419146781 509 dbSNP
rs566752897 530 dbSNP
rs1394924866 531 dbSNP
rs986588839 533 dbSNP
rs1471893729 534 dbSNP
rs1441447514 538 dbSNP
rs1019744373 546 dbSNP
rs1488612599 553 dbSNP
rs1329315089 557 dbSNP
rs1232416061 565 dbSNP
rs1274360587 570 dbSNP
rs1351444504 571 dbSNP
rs1289892483 573 dbSNP
rs1229693024 577 dbSNP
rs1434919633 581 dbSNP
rs1284045521 589 dbSNP
rs532581825 599 dbSNP
rs1230469367 600 dbSNP
rs1175180199 610 dbSNP
rs1266534572 616 dbSNP
rs934498879 618 dbSNP
rs1214749701 624 dbSNP
rs777928934 624 dbSNP
rs975252029 627 dbSNP
rs1052467313 630 dbSNP
rs1450413382 633 dbSNP
rs1366277883 636 dbSNP
rs1198724682 638 dbSNP
rs1413337516 639 dbSNP
rs1440878650 648 dbSNP
rs1162471003 649 dbSNP
rs1478041352 651 dbSNP
rs892591838 653 dbSNP
rs1375464977 660 dbSNP
rs983074744 663 dbSNP
rs1473251362 667 dbSNP
rs1223123114 669 dbSNP
rs1246380765 670 dbSNP
rs1013523735 672 dbSNP
rs1410859430 673 dbSNP
rs1438700964 677 dbSNP
rs1320481675 681 dbSNP
rs1218577214 688 dbSNP
rs1276624101 688 dbSNP
rs940648443 691 dbSNP
rs1327729418 693 dbSNP
rs1388251668 694 dbSNP
rs75280469 704 dbSNP
rs905208376 705 dbSNP
rs937407499 709 dbSNP
rs1235230858 730 dbSNP
rs1336444196 730 dbSNP
rs1002417764 732 dbSNP
rs893296171 735 dbSNP
rs1402215325 740 dbSNP
rs1016933596 748 dbSNP
rs1168258937 749 dbSNP
rs199944243 757 dbSNP
rs767684538 757 dbSNP
rs1286498320 760 dbSNP
rs1192476750 761 dbSNP
rs139299300 763 dbSNP
rs764783007 763 dbSNP
rs886058934 766 dbSNP
rs750665721 769 dbSNP
rs1267636567 773 dbSNP
rs1198887003 775 dbSNP
rs569600043 778 dbSNP
rs1020935079 780 dbSNP
rs1198402513 782 dbSNP
rs1209779299 784 dbSNP
rs1251937741 788 dbSNP
rs902852996 789 dbSNP
rs1459476695 794 dbSNP
rs1217939912 795 dbSNP
rs1367007259 799 dbSNP
rs1179446966 801 dbSNP
rs1008276743 809 dbSNP
rs1026050039 813 dbSNP
rs757858769 824 dbSNP
rs549009552 828 dbSNP
rs1166423660 833 dbSNP
rs1329098582 837 dbSNP
rs1192353646 838 dbSNP
rs1461276590 840 dbSNP
rs781640960 841 dbSNP
rs1457169494 849 dbSNP
rs987234227 853 dbSNP
rs1168277157 854 dbSNP
rs910196673 860 dbSNP
rs1372375010 863 dbSNP
rs1427716008 864 dbSNP
rs963786715 865 dbSNP
rs964735105 869 dbSNP
rs978669534 874 dbSNP
rs1415630594 877 dbSNP
rs1220259254 882 dbSNP
rs1235941290 887 dbSNP
rs1315034147 890 dbSNP
rs1026786413 891 dbSNP
rs925899402 892 dbSNP
rs952522444 894 dbSNP
rs934509988 895 dbSNP
rs1203573458 898 dbSNP
rs1273326669 899 dbSNP
rs1485675700 906 dbSNP
rs1183252203 912 dbSNP
rs982722258 915 dbSNP
rs750818567 917 dbSNP
rs1422847120 922 dbSNP
rs756352898 937 dbSNP
rs1052909252 938 dbSNP
rs1391731484 941 dbSNP
rs1286917331 942 dbSNP
rs780194011 944 dbSNP
rs1355845927 945 dbSNP
rs749361272 953 dbSNP
rs1242370292 956 dbSNP
rs1370039640 964 dbSNP
rs1466664494 969 dbSNP
rs917091465 971 dbSNP
rs949322574 977 dbSNP
rs981887637 982 dbSNP
rs1379627544 989 dbSNP
rs1296773592 996 dbSNP
rs1367749026 997 dbSNP
rs538413974 1002 dbSNP
rs779000005 1003 dbSNP
rs1349215949 1017 dbSNP
rs1211668724 1019 dbSNP
rs1374765559 1022 dbSNP
rs1325161502 1030 dbSNP
rs1158764669 1032 dbSNP
rs1420958729 1035 dbSNP
rs1253718309 1043 dbSNP
rs1157926286 1048 dbSNP
rs937438573 1048 dbSNP
rs1482736093 1052 dbSNP
rs1423976382 1053 dbSNP
rs184920065 1064 dbSNP
rs1249663328 1072 dbSNP
rs1180478606 1075 dbSNP
rs1483232605 1076 dbSNP
rs746902994 1077 dbSNP
rs1447372877 1083 dbSNP
rs893327227 1088 dbSNP
rs1395683006 1096 dbSNP
rs1434809374 1107 dbSNP
rs1178391592 1110 dbSNP
rs947505057 1118 dbSNP
rs770870837 1124 dbSNP
rs1321391158 1126 dbSNP
rs1391309332 1130 dbSNP
rs903468469 1131 dbSNP
rs1323715544 1132 dbSNP
rs1320301900 1136 dbSNP
rs78386221 1137 dbSNP
rs1019726120 1138 dbSNP
rs759316487 1141 dbSNP
rs1354793943 1145 dbSNP
rs1298752341 1147 dbSNP
rs899478134 1153 dbSNP
rs1311034105 1159 dbSNP
rs1239330108 1165 dbSNP
rs1269690618 1171 dbSNP
rs535961865 1174 dbSNP
rs1207916820 1180 dbSNP
rs1253376327 1189 dbSNP
rs1296348949 1189 dbSNP
rs996568969 1191 dbSNP
rs553071584 1201 dbSNP
rs1026650448 1205 dbSNP
rs1489438868 1212 dbSNP
rs1189360614 1216 dbSNP
rs1196474867 1217 dbSNP
rs1037954433 1227 dbSNP
rs1261199115 1229 dbSNP
rs1210503023 1233 dbSNP
rs1432608863 1235 dbSNP
rs952555318 1236 dbSNP
rs1273144976 1241 dbSNP
rs1159988342 1253 dbSNP
rs1414551765 1260 dbSNP
rs1455821277 1266 dbSNP
rs1158920897 1273 dbSNP
rs775044907 1275 dbSNP
rs1004487910 1276 dbSNP
rs780073732 1279 dbSNP
rs1292230290 1285 dbSNP
rs1367496481 1286 dbSNP
rs1409970053 1290 dbSNP
rs569209313 1295 dbSNP
rs1326703741 1304 dbSNP
rs1227349762 1306 dbSNP
rs1290371370 1313 dbSNP
rs1240782439 1314 dbSNP
rs1323223266 1317 dbSNP
rs1474876714 1318 dbSNP
rs1291462710 1323 dbSNP
rs1219298189 1326 dbSNP
rs1246116003 1327 dbSNP
rs538653870 1329 dbSNP
rs1173254109 1337 dbSNP
rs762697793 1344 dbSNP
rs1026456486 1347 dbSNP
rs982039156 1348 dbSNP
rs1181644374 1354 dbSNP
rs749390354 1357 dbSNP
rs763646790 1358 dbSNP
rs1163113786 1359 dbSNP
rs1349846329 1360 dbSNP
rs1008612749 1362 dbSNP
rs1200272996 1363 dbSNP
rs1017780176 1367 dbSNP
rs964403905 1372 dbSNP
rs1395141516 1374 dbSNP
rs1463001949 1377 dbSNP
rs558400456 1379 dbSNP
rs1348049594 1384 dbSNP
rs1408846574 1393 dbSNP
rs1284369068 1399 dbSNP
rs978876843 1407 dbSNP
rs1332324120 1408 dbSNP
rs1380873176 1413 dbSNP
rs751127466 1414 dbSNP
rs1298484119 1415 dbSNP
rs1032911916 1426 dbSNP
rs776558989 1429 dbSNP
rs955986846 1431 dbSNP
rs189916475 1433 dbSNP
rs1377174993 1436 dbSNP
rs79620698 1448 dbSNP
rs1342811560 1450 dbSNP
rs1333835555 1453 dbSNP
rs917039146 1456 dbSNP
rs949893353 1458 dbSNP
rs1042319699 1464 dbSNP
rs762341409 1466 dbSNP
rs1238331927 1471 dbSNP
rs1473879264 1472 dbSNP
rs1180524957 1474 dbSNP
rs575184070 1482 dbSNP
rs1289694298 1483 dbSNP
rs1413467749 1485 dbSNP
rs1173088909 1493 dbSNP
rs768202803 1496 dbSNP
rs1342407097 1498 dbSNP
rs1170962405 1501 dbSNP
rs1055417789 1504 dbSNP
rs750800124 1508 dbSNP
rs982207972 1518 dbSNP
rs1435900298 1519 dbSNP
rs1334241680 1520 dbSNP
rs1200977726 1522 dbSNP
rs1249475593 1522 dbSNP
rs756480566 1551 dbSNP
rs181100219 1552 dbSNP
rs1277657777 1553 dbSNP
rs1283412017 1557 dbSNP
rs1232886083 1560 dbSNP
rs753971802 1562 dbSNP
rs1354031238 1565 dbSNP
rs1311024443 1573 dbSNP
rs938008399 1574 dbSNP
rs1295389466 1577 dbSNP
rs1341360707 1586 dbSNP
rs1335547820 1588 dbSNP
rs1195336254 1595 dbSNP
rs560754382 1600 dbSNP
rs1444362888 1601 dbSNP
rs1208236343 1608 dbSNP
rs1242927346 1610 dbSNP
rs1446806287 1611 dbSNP
rs1173151710 1617 dbSNP
rs1465586730 1627 dbSNP
rs1420412626 1631 dbSNP
rs899177436 1636 dbSNP
rs1382206699 1638 dbSNP
rs755253862 1647 dbSNP
rs1020647499 1650 dbSNP
rs886058935 1655 dbSNP
rs1187992962 1670 dbSNP
rs778910067 1680 dbSNP
rs1449360644 1690 dbSNP
rs1255291224 1691 dbSNP
rs141614655 1697 dbSNP
rs1264880009 1699 dbSNP
rs760573585 1701 dbSNP
rs1426602169 1702 dbSNP
rs567211919 1706 dbSNP
rs540362772 1708 dbSNP
rs1333025256 1709 dbSNP
rs1221726493 1710 dbSNP
rs770852325 1710 dbSNP
rs1437089937 1711 dbSNP
rs1186590186 1715 dbSNP
rs1418032064 1716 dbSNP
rs183639595 1719 dbSNP
rs532382017 1724 dbSNP
rs1285200129 1725 dbSNP
rs1247417458 1731 dbSNP
rs1364431021 1732 dbSNP
rs1003888647 1733 dbSNP
rs890595390 1757 dbSNP
rs1033557363 1759 dbSNP
rs747938808 1760 dbSNP
rs1296407366 1761 dbSNP
rs1347136303 1763 dbSNP
rs1400412499 1768 dbSNP
rs552563825 1771 dbSNP
rs563142267 1776 dbSNP
rs1473667742 1778 dbSNP
rs532053400 1780 dbSNP
rs763959837 1794 dbSNP
rs991523971 1794 dbSNP
rs1211014384 1797 dbSNP
rs1246550627 1803 dbSNP
rs900274480 1804 dbSNP
rs1200113616 1811 dbSNP
rs752990716 1817 dbSNP
rs886058936 1817 dbSNP
rs1476788848 1820 dbSNP
rs1171480467 1822 dbSNP
rs1412302846 1823 dbSNP
rs548945864 1827 dbSNP
rs867636989 1828 dbSNP
rs549742916 1835 dbSNP
rs150115163 1836 dbSNP
rs1290180610 1842 dbSNP
rs1156709822 1845 dbSNP
rs1033066422 1847 dbSNP
rs914575650 1847 dbSNP
rs534437881 1849 dbSNP
rs988652015 1850 dbSNP
rs1387286949 1852 dbSNP
rs753639198 1854 dbSNP
rs1024207414 1857 dbSNP
rs1268529869 1859 dbSNP
rs1325382628 1860 dbSNP
rs971201845 1864 dbSNP
rs1430077253 1868 dbSNP
rs373781464 1872 dbSNP
rs1434491068 1877 dbSNP
rs757151218 1878 dbSNP
rs980365442 1890 dbSNP
rs1230414852 1893 dbSNP
rs1491271498 1894 dbSNP
rs1392033128 1895 dbSNP
rs1491123023 1895 dbSNP
rs977503731 1896 dbSNP
rs1210795053 1898 dbSNP
rs1292723972 1900 dbSNP
rs766643729 1901 dbSNP
rs775376341 1905 dbSNP
rs1350322649 1906 dbSNP
rs1198120410 1908 dbSNP
rs188106016 1911 dbSNP
rs1473384727 1915 dbSNP
rs1179489187 1916 dbSNP
rs762453394 1917 dbSNP
rs924790430 1918 dbSNP
rs546356317 1923 dbSNP
rs773990839 1926 dbSNP
rs1404675207 1927 dbSNP
rs1041286792 1929 dbSNP
rs1214454052 1935 dbSNP
rs1368399976 1937 dbSNP
rs1276627071 1939 dbSNP
rs1302657437 1942 dbSNP
rs761464983 1945 dbSNP
rs920556120 1947 dbSNP
rs1411910935 1950 dbSNP
rs929300645 1951 dbSNP
rs1168244199 1958 dbSNP
rs1048071582 1960 dbSNP
rs1335394263 1961 dbSNP
rs566582201 1963 dbSNP
rs1246035224 1967 dbSNP
rs1048001521 1970 dbSNP
rs1286296119 1975 dbSNP
rs1443666652 1976 dbSNP
rs758717865 1983 dbSNP
rs1452227464 1988 dbSNP
rs1251962171 1995 dbSNP
rs1354882706 1996 dbSNP
rs890752309 1998 dbSNP
rs1459393884 2002 dbSNP
rs1222343851 2006 dbSNP
rs1274732593 2007 dbSNP
rs538221197 2010 dbSNP
rs888107900 2013 dbSNP
rs1313281322 2019 dbSNP
rs1249468254 2022 dbSNP
rs773629297 2025 dbSNP
rs1180268159 2026 dbSNP
rs571746079 2027 dbSNP
rs538772098 2031 dbSNP
rs1039640757 2036 dbSNP
rs766607945 2037 dbSNP
rs906362290 2039 dbSNP
rs1372313465 2042 dbSNP
rs1296227811 2046 dbSNP
rs1441474812 2051 dbSNP
rs900684574 2058 dbSNP
rs1431776121 2061 dbSNP
rs1033506726 2063 dbSNP
rs754245740 2064 dbSNP
rs755129727 2065 dbSNP
rs1396770230 2067 dbSNP
rs1315304721 2068 dbSNP
rs1393913962 2071 dbSNP
rs866234411 2072 dbSNP
rs1339003419 2085 dbSNP
rs1245907462 2092 dbSNP
rs773195016 2093 dbSNP
rs558136204 2094 dbSNP
rs891451589 2096 dbSNP
rs1250245908 2100 dbSNP
rs1483386533 2106 dbSNP
rs968723805 2107 dbSNP
rs1201779228 2109 dbSNP
rs1009895479 2124 dbSNP
rs977910364 2126 dbSNP
rs1253826334 2135 dbSNP
rs1242660297 2137 dbSNP
rs1286762355 2137 dbSNP
rs113848286 2147 dbSNP
rs1188962442 2152 dbSNP
rs1280639638 2158 dbSNP
rs1304654092 2158 dbSNP
rs1391991834 2158 dbSNP
rs367892014 2160 dbSNP
rs1168448386 2163 dbSNP
rs1372531588 2168 dbSNP
rs976927015 2177 dbSNP
rs971316523 2179 dbSNP
rs1304745840 2186 dbSNP
rs1404170202 2190 dbSNP
rs1452455758 2195 dbSNP
rs1295086828 2202 dbSNP
rs1412786184 2202 dbSNP
rs557890470 2204 dbSNP
rs1321609526 2205 dbSNP
rs1455081847 2219 dbSNP
rs1343039624 2220 dbSNP
rs752760421 2224 dbSNP
rs1433468195 2228 dbSNP
rs1034573570 2231 dbSNP
rs1312196654 2232 dbSNP
rs1420396264 2242 dbSNP
rs1234980211 2246 dbSNP
rs1186445282 2247 dbSNP
rs1253944584 2248 dbSNP
rs1475159718 2252 dbSNP
rs1322360742 2255 dbSNP
rs758522908 2263 dbSNP
rs1209174186 2264 dbSNP
rs777860722 2265 dbSNP
rs78210887 2266 dbSNP
rs1185788000 2272 dbSNP
rs756089792 2273 dbSNP
rs770774271 2274 dbSNP
rs779645955 2279 dbSNP
rs1438324947 2280 dbSNP
rs1260383669 2281 dbSNP
rs920712421 2281 dbSNP
rs1322106836 2282 dbSNP
rs1469466365 2283 dbSNP
rs1250887012 2288 dbSNP
rs909558478 2291 dbSNP
rs749170235 2292 dbSNP
rs751962863 2294 dbSNP
rs1453603461 2297 dbSNP
rs149269561 2298 dbSNP
rs1288740771 2314 dbSNP
rs757759984 2317 dbSNP
rs571764907 2319 dbSNP
rs1397224196 2325 dbSNP
rs1280781102 2326 dbSNP
rs764596177 2333 dbSNP
rs1461416604 2334 dbSNP
rs1228576990 2336 dbSNP
rs1269785830 2342 dbSNP
rs771671552 2349 dbSNP
rs1326741097 2351 dbSNP
rs1214788063 2352 dbSNP
rs772804892 2355 dbSNP
rs761032648 2356 dbSNP
rs1395912719 2362 dbSNP
rs774750592 2363 dbSNP
rs146137797 2364 dbSNP
rs371767346 2367 dbSNP
rs1392688439 2371 dbSNP
rs566147341 2373 dbSNP
rs1414672891 2377 dbSNP
rs1399379886 2381 dbSNP
rs1305275892 2382 dbSNP
rs1158794998 2386 dbSNP
rs1294222993 2395 dbSNP
rs1351024499 2396 dbSNP
rs1459853666 2399 dbSNP
rs1300780929 2416 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 200894.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000535334.1 | 3UTR | UAUUUACUUUAAAAAUUGUACUUCAGAACAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-7849-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT062192 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT064755 CCND2 cyclin D2 2 8
MIRT076594 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT086027 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT091394 EIF4A2 eukaryotic translation initiation factor 4A2 2 2
MIRT104730 KLF10 Kruppel like factor 10 2 2
MIRT105345 SLC7A2 solute carrier family 7 member 2 2 2
MIRT105672 PNMA2 paraneoplastic Ma antigen 2 2 6
MIRT173218 TMEM64 transmembrane protein 64 2 2
MIRT228305 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT229503 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT243387 SKIL SKI like proto-oncogene 2 2
MIRT257404 E2F3 E2F transcription factor 3 2 2
MIRT301069 SLC16A14 solute carrier family 16 member 14 2 4
MIRT307327 CTNNB1 catenin beta 1 2 2
MIRT443182 DENND4C DENN domain containing 4C 2 2
MIRT469272 RHOB ras homolog family member B 2 8
MIRT475106 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT484134 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT491117 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT504856 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT505544 SNX16 sorting nexin 16 2 6
MIRT506752 LCOR ligand dependent nuclear receptor corepressor 2 8
MIRT507358 FAM129A family with sequence similarity 129 member A 2 6
MIRT507812 CDK6 cyclin dependent kinase 6 2 6
MIRT510730 SON SON DNA binding protein 2 6
MIRT521296 RRAGD Ras related GTP binding D 2 4
MIRT521371 RNF11 ring finger protein 11 2 6
MIRT525860 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT527352 FAM69C family with sequence similarity 69 member C 2 2
MIRT528796 RAB32 RAB32, member RAS oncogene family 2 2
MIRT530417 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT533425 TWF1 twinfilin actin binding protein 1 2 2
MIRT539512 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543660 ZNF589 zinc finger protein 589 2 4
MIRT544833 ZNF639 zinc finger protein 639 2 2
MIRT545266 TRIM36 tripartite motif containing 36 2 4
MIRT545425 SLC39A6 solute carrier family 39 member 6 2 2
MIRT546070 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT546896 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT547932 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT548836 CHD1 chromodomain helicase DNA binding protein 1 2 4
MIRT550937 ZNF100 zinc finger protein 100 2 2
MIRT551840 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT553749 TBC1D8 TBC1 domain family member 8 2 2
MIRT554070 SOBP sine oculis binding protein homolog 2 2
MIRT554254 SIX4 SIX homeobox 4 2 2
MIRT558254 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT559252 BBX BBX, HMG-box containing 2 4
MIRT561110 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT561412 TSN translin 2 2
MIRT562154 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT563324 ORC4 origin recognition complex subunit 4 2 2
MIRT563985 SLFN11 schlafen family member 11 2 2
MIRT571387 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT575040 Fasl Fas ligand (TNF superfamily, member 6) 1 1
MIRT610374 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT611045 FASLG Fas ligand 2 3
MIRT625440 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT655071 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT656139 MSH6 mutS homolog 6 2 2
MIRT667042 PDE3A phosphodiesterase 3A 2 2
MIRT691264 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT699773 SEMA4D semaphorin 4D 2 2
MIRT707809 TSPAN6 tetraspanin 6 2 2
MIRT711125 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT714107 RLIM ring finger protein, LIM domain interacting 2 2
MIRT717792 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT717929 ZNF546 zinc finger protein 546 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7849-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-7849-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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