pre-miRNA Information
pre-miRNA hsa-mir-378f   
Genomic Coordinates chr1: 23929070 - 23929147
Description Homo sapiens miR-378f stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-378f
Sequence 52| ACUGGACUUGGAGCCAGAAG |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 18 1 + 23929138 29233923 MiREDiBase
A-to-I 19 1 + 23929139 29233923 MiREDiBase
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SPA17   
Synonyms CT22, SP17, SP17-1
Description sperm autoantigenic protein 17
Transcript NM_017425   
Expression
Putative miRNA Targets on SPA17
3'UTR of SPA17
(miRNA target sites are highlighted)
>SPA17|NM_017425|3'UTR
   1 GGACACTGGTTTTACCTCCAGGAAACATGAAAAATAATCCAAATCCATCAACCTTCTTATTAATGTCATTTCTTCCTGAG
  81 GAAGGAAGATTTGATGTTGTGAAATAACATTCGTTACTGTTGTGAAAATCTGTCATGAGCATTTGTTTAATAAGCATACC
 161 ATTGAAACATGCCACTTGAAGATTTCTCTGAGATCATGAGTTTGTTTACACTTGTCTCAAGCCTATCTATAGAGACCCTT
 241 GGATTTAGAATTATAGAACTAAAGTATCTGAGATTACAGAGATCTCAGAGGTTATGTGTTCTAACTATTATCAAATGAAT
 321 AAATCCTCTCTATCACATCCCCCAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaaGACCGAGGUUCAGGUCa 5'
             ||||:|::|  ||||| 
Target 5' acaCTGGTTTTACCTCCAGg 3'
3 - 22 109.00 -17.20
2
miRNA  3' gaagaccgAGGUUCAGGUca 5'
                  ||||| ||||  
Target 5' aaaaataaTCCAAATCCAtc 3'
30 - 49 108.00 -8.40
3
miRNA  3' gaaGACCGAGGUUCAGGUca 5'
             || |: :|||| |:|  
Target 5' acaCTTGTCTCAAGCCTAtc 3'
208 - 227 93.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30471695 42 COSMIC
COSN17132576 66 COSMIC
COSN30178506 79 COSMIC
COSN30134834 112 COSMIC
COSN31554823 113 COSMIC
COSN30509412 114 COSMIC
COSN30175071 183 COSMIC
COSN31559050 187 COSMIC
COSN16707020 215 COSMIC
COSN16176427 266 COSMIC
COSN24414294 666 COSMIC
COSN23378959 835 COSMIC
COSN16506040 974 COSMIC
COSN27642003 1252 COSMIC
COSN19062922 1422 COSMIC
COSN29077752 1499 COSMIC
COSN18827149 1586 COSMIC
COSN15020319 1795 COSMIC
COSN28201851 2330 COSMIC
COSN5898091 2330 COSMIC
COSN20807214 2471 COSMIC
COSN16663374 2500 COSMIC
COSN1517662 2855 COSMIC
rs143429471 2859 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758658063 6 dbSNP
rs1409956676 7 dbSNP
rs1299514038 10 dbSNP
rs780425513 11 dbSNP
rs866434562 13 dbSNP
rs1213458121 17 dbSNP
rs1386500048 21 dbSNP
rs61910597 22 dbSNP
rs375034133 26 dbSNP
rs1400230257 28 dbSNP
rs375649116 30 dbSNP
rs1236604376 37 dbSNP
rs781764718 41 dbSNP
rs1009572057 43 dbSNP
rs1365356859 48 dbSNP
rs1274608867 50 dbSNP
rs532763305 54 dbSNP
rs111712166 61 dbSNP
rs1437131269 68 dbSNP
rs903987334 74 dbSNP
rs1001433754 78 dbSNP
rs1033881592 86 dbSNP
rs1409436564 95 dbSNP
rs1417469805 110 dbSNP
rs1471398727 113 dbSNP
rs571193646 114 dbSNP
rs1478284230 121 dbSNP
rs1407590562 124 dbSNP
rs1489371292 125 dbSNP
rs992443821 125 dbSNP
rs984731205 137 dbSNP
rs532019294 138 dbSNP
rs1024619912 157 dbSNP
rs1305186124 162 dbSNP
rs1259440949 163 dbSNP
rs910493405 179 dbSNP
rs961041910 182 dbSNP
rs972431468 187 dbSNP
rs755171540 190 dbSNP
rs919665722 201 dbSNP
rs931105018 210 dbSNP
rs1385431568 216 dbSNP
rs985677280 230 dbSNP
rs1294565356 233 dbSNP
rs776357469 244 dbSNP
rs911076488 253 dbSNP
rs943923653 256 dbSNP
rs1172947736 257 dbSNP
rs781366653 261 dbSNP
rs550442374 263 dbSNP
rs1052910050 265 dbSNP
rs568658779 271 dbSNP
rs75499917 273 dbSNP
rs748386361 283 dbSNP
rs770017510 284 dbSNP
rs553931591 286 dbSNP
rs1479627695 290 dbSNP
rs566090699 296 dbSNP
rs1221747453 303 dbSNP
rs945377734 309 dbSNP
rs1460525621 313 dbSNP
rs1260849897 315 dbSNP
rs1042404037 320 dbSNP
rs1314252949 321 dbSNP
rs1348050156 327 dbSNP
rs1210792605 333 dbSNP
rs879798231 339 dbSNP
rs1223678709 344 dbSNP
rs1278862077 344 dbSNP
rs879573429 349 dbSNP
rs1439895151 350 dbSNP
rs1182918817 361 dbSNP
rs539417114 365 dbSNP
rs867220946 368 dbSNP
rs190735333 372 dbSNP
rs1014222592 381 dbSNP
rs951818809 385 dbSNP
rs778023512 386 dbSNP
rs575959972 393 dbSNP
rs1025227144 398 dbSNP
rs1158139633 410 dbSNP
rs1417120249 411 dbSNP
rs961655844 412 dbSNP
rs1453934894 419 dbSNP
rs1382071634 421 dbSNP
rs1179240462 430 dbSNP
rs1172906645 432 dbSNP
rs1240741850 436 dbSNP
rs993817888 439 dbSNP
rs749711869 447 dbSNP
rs1483391370 459 dbSNP
rs1259826121 463 dbSNP
rs1215494443 464 dbSNP
rs1017430809 475 dbSNP
rs1312094513 477 dbSNP
rs1329254052 479 dbSNP
rs771194096 480 dbSNP
rs1382048716 498 dbSNP
rs952545782 505 dbSNP
rs1403139312 509 dbSNP
rs1288560972 513 dbSNP
rs1417619213 517 dbSNP
rs1353712352 520 dbSNP
rs1159107473 523 dbSNP
rs117266941 524 dbSNP
rs1366163446 525 dbSNP
rs911010530 527 dbSNP
rs555151258 530 dbSNP
rs573453942 531 dbSNP
rs965244037 532 dbSNP
rs1232987412 533 dbSNP
rs976595104 544 dbSNP
rs913143829 550 dbSNP
rs1217923863 554 dbSNP
rs141826276 555 dbSNP
rs1042351737 569 dbSNP
rs1264241251 574 dbSNP
rs925307353 576 dbSNP
rs936724977 577 dbSNP
rs1055224952 578 dbSNP
rs1436494324 601 dbSNP
rs1215787021 605 dbSNP
rs776317415 610 dbSNP
rs559149474 611 dbSNP
rs1013743913 614 dbSNP
rs1046627964 616 dbSNP
rs1476314115 617 dbSNP
rs1164995789 625 dbSNP
rs1457968770 627 dbSNP
rs897391260 638 dbSNP
rs1372009828 639 dbSNP
rs994437996 640 dbSNP
rs1478609163 641 dbSNP
rs1265740401 642 dbSNP
rs1026621635 643 dbSNP
rs952420092 649 dbSNP
rs1490301922 652 dbSNP
rs938282833 653 dbSNP
rs1418523070 655 dbSNP
rs1212219444 660 dbSNP
rs1463904451 672 dbSNP
rs1007011171 677 dbSNP
rs761776414 677 dbSNP
rs896161221 677 dbSNP
rs547119041 682 dbSNP
rs1404096820 684 dbSNP
rs965537566 688 dbSNP
rs1325371069 695 dbSNP
rs1387297944 696 dbSNP
rs1395087360 700 dbSNP
rs976541316 711 dbSNP
rs1394703620 713 dbSNP
rs1005956306 726 dbSNP
rs533027371 733 dbSNP
rs1320935751 734 dbSNP
rs1423864935 744 dbSNP
rs1327692031 745 dbSNP
rs1017461892 748 dbSNP
rs1201571804 759 dbSNP
rs1452726290 763 dbSNP
rs1270199871 768 dbSNP
rs964502224 770 dbSNP
rs913091382 777 dbSNP
rs967246244 781 dbSNP
rs577229054 786 dbSNP
rs1258948786 803 dbSNP
rs978663972 806 dbSNP
rs760340728 811 dbSNP
rs997443473 814 dbSNP
rs1274225647 827 dbSNP
rs1233828441 833 dbSNP
rs1468173371 834 dbSNP
rs1329282774 846 dbSNP
rs544397791 850 dbSNP
rs563268540 858 dbSNP
rs1280545351 876 dbSNP
rs925242941 878 dbSNP
rs112448335 881 dbSNP
rs1400476260 882 dbSNP
rs1412413136 885 dbSNP
rs991261252 885 dbSNP
rs1325924858 894 dbSNP
rs1423440683 898 dbSNP
rs916655665 899 dbSNP
rs1478589715 901 dbSNP
rs1380214642 904 dbSNP
rs532082469 906 dbSNP
rs1441553398 912 dbSNP
rs550458247 914 dbSNP
rs1193769640 916 dbSNP
rs1241494261 931 dbSNP
rs913892664 933 dbSNP
rs1476812644 935 dbSNP
rs1352785922 940 dbSNP
rs1046575903 941 dbSNP
rs10219270 945 dbSNP
rs765133936 948 dbSNP
rs529439625 953 dbSNP
rs1460537484 956 dbSNP
rs1313765953 958 dbSNP
rs547888445 963 dbSNP
rs61676288 963 dbSNP
rs1415401168 965 dbSNP
rs888734522 965 dbSNP
rs1006551311 967 dbSNP
rs1386493025 973 dbSNP
rs1422088564 975 dbSNP
rs1380957192 981 dbSNP
rs1181318443 989 dbSNP
rs1382342844 994 dbSNP
rs1018387471 1002 dbSNP
rs1188587630 1007 dbSNP
rs1487800535 1007 dbSNP
rs1283636975 1008 dbSNP
rs757968380 1023 dbSNP
rs900902312 1024 dbSNP
rs559386843 1028 dbSNP
rs1354363164 1043 dbSNP
rs1318225503 1044 dbSNP
rs1289122469 1046 dbSNP
rs10219424 1047 dbSNP
rs918206230 1048 dbSNP
rs539900273 1051 dbSNP
rs557778029 1052 dbSNP
rs1361704277 1053 dbSNP
rs1164759413 1055 dbSNP
rs1403670160 1073 dbSNP
rs887420568 1075 dbSNP
rs1163991439 1078 dbSNP
rs1477630033 1079 dbSNP
rs978611448 1084 dbSNP
rs551509967 1097 dbSNP
rs1488528326 1102 dbSNP
rs569707580 1104 dbSNP
rs958899779 1105 dbSNP
rs761737457 1106 dbSNP
rs569731109 1107 dbSNP
rs1322942178 1116 dbSNP
rs1290001424 1121 dbSNP
rs537661748 1140 dbSNP
rs1315655359 1143 dbSNP
rs997389689 1144 dbSNP
rs562677814 1148 dbSNP
rs750403379 1155 dbSNP
rs1030152712 1159 dbSNP
rs1402223635 1161 dbSNP
rs1204578939 1166 dbSNP
rs949418172 1176 dbSNP
rs1284010165 1187 dbSNP
rs982200663 1195 dbSNP
rs1351639480 1197 dbSNP
rs536949237 1199 dbSNP
rs1421739028 1207 dbSNP
rs1010127238 1209 dbSNP
rs930124299 1212 dbSNP
rs758344977 1214 dbSNP
rs1021394326 1216 dbSNP
rs1189351809 1219 dbSNP
rs1489443086 1224 dbSNP
rs1247263185 1235 dbSNP
rs1049073300 1246 dbSNP
rs1197440127 1258 dbSNP
rs1474794288 1259 dbSNP
rs968035218 1261 dbSNP
rs1218865522 1270 dbSNP
rs1308387682 1275 dbSNP
rs1184925950 1293 dbSNP
rs1301041267 1294 dbSNP
rs1217935514 1305 dbSNP
rs1370321492 1307 dbSNP
rs1365236290 1311 dbSNP
rs979492871 1314 dbSNP
rs1033756654 1325 dbSNP
rs1333547958 1328 dbSNP
rs888693046 1330 dbSNP
rs942969244 1331 dbSNP
rs1437065432 1332 dbSNP
rs1039347730 1336 dbSNP
rs900862278 1343 dbSNP
rs1355220907 1348 dbSNP
rs1173661923 1349 dbSNP
rs781452584 1367 dbSNP
rs1425762933 1381 dbSNP
rs1394703514 1387 dbSNP
rs929559348 1390 dbSNP
rs1309630214 1401 dbSNP
rs1239478447 1402 dbSNP
rs983697004 1412 dbSNP
rs184176744 1417 dbSNP
rs1253920775 1420 dbSNP
rs1208431859 1423 dbSNP
rs1314377813 1427 dbSNP
rs1304722305 1436 dbSNP
rs1238606080 1440 dbSNP
rs1283897677 1447 dbSNP
rs371681273 1449 dbSNP
rs1019995763 1450 dbSNP
rs573794761 1451 dbSNP
rs752777206 1453 dbSNP
rs1378697503 1472 dbSNP
rs1301378790 1475 dbSNP
rs1033280648 1476 dbSNP
rs1467382130 1479 dbSNP
rs1212925143 1483 dbSNP
rs958623539 1487 dbSNP
rs1417808324 1494 dbSNP
rs991826548 1495 dbSNP
rs1178680843 1496 dbSNP
rs1422779237 1520 dbSNP
rs1051613408 1525 dbSNP
rs1183244468 1527 dbSNP
rs1484409394 1531 dbSNP
rs1482794973 1534 dbSNP
rs1281523977 1535 dbSNP
rs147121213 1547 dbSNP
rs567897263 1548 dbSNP
rs1288849113 1549 dbSNP
rs749455733 1559 dbSNP
rs553108253 1564 dbSNP
rs147715632 1568 dbSNP
rs1321262497 1575 dbSNP
rs918665716 1584 dbSNP
rs1310759537 1586 dbSNP
rs904429456 1589 dbSNP
rs372420965 1592 dbSNP
rs1297386951 1603 dbSNP
rs1397955160 1606 dbSNP
rs1033620638 1609 dbSNP
rs984289074 1620 dbSNP
rs1366218955 1627 dbSNP
rs910059785 1634 dbSNP
rs1025581730 1643 dbSNP
rs1174788754 1644 dbSNP
rs1193362274 1645 dbSNP
rs553346423 1649 dbSNP
rs577626903 1653 dbSNP
rs1265962984 1654 dbSNP
rs1206249262 1658 dbSNP
rs1465010144 1663 dbSNP
rs145868277 1664 dbSNP
rs544151704 1669 dbSNP
rs1397670128 1675 dbSNP
rs909506918 1677 dbSNP
rs1391023750 1683 dbSNP
rs562337544 1688 dbSNP
rs1373244021 1693 dbSNP
rs529576245 1707 dbSNP
rs1235186104 1714 dbSNP
rs547703352 1715 dbSNP
rs1302801983 1719 dbSNP
rs368169895 1720 dbSNP
rs974435854 1733 dbSNP
rs1386162161 1737 dbSNP
rs775671484 1737 dbSNP
rs1294740928 1741 dbSNP
rs1230986282 1749 dbSNP
rs1422451006 1752 dbSNP
rs1168172203 1753 dbSNP
rs921571435 1754 dbSNP
rs1252794178 1756 dbSNP
rs1480870656 1757 dbSNP
rs1194461744 1761 dbSNP
rs1451571448 1762 dbSNP
rs188685618 1773 dbSNP
rs1041401196 1780 dbSNP
rs1197621694 1790 dbSNP
rs1236023759 1792 dbSNP
rs933077595 1801 dbSNP
rs1469010383 1804 dbSNP
rs533306332 1805 dbSNP
rs1196999087 1809 dbSNP
rs1319676752 1813 dbSNP
rs1270581962 1825 dbSNP
rs1051487392 1830 dbSNP
rs563826458 1832 dbSNP
rs902921149 1849 dbSNP
rs7938692 1850 dbSNP
rs1431883028 1860 dbSNP
rs1398920263 1863 dbSNP
rs1054264696 1866 dbSNP
rs1466886358 1867 dbSNP
rs1399037432 1871 dbSNP
rs775951942 1877 dbSNP
rs569736225 1878 dbSNP
rs529828276 1880 dbSNP
rs374945836 1882 dbSNP
rs1388675678 1888 dbSNP
rs904471204 1896 dbSNP
rs368048272 1901 dbSNP
rs1439743603 1906 dbSNP
rs1274036370 1909 dbSNP
rs971337298 1926 dbSNP
rs1396905613 1927 dbSNP
rs1441960502 1928 dbSNP
rs1033653438 1930 dbSNP
rs1375459817 1932 dbSNP
rs1325231294 1938 dbSNP
rs1448407544 1939 dbSNP
rs1335961583 1948 dbSNP
rs895126928 1952 dbSNP
rs1414258062 1953 dbSNP
rs1365600618 1954 dbSNP
rs1217395660 1956 dbSNP
rs1176023783 1957 dbSNP
rs1435918205 1957 dbSNP
rs34955804 1957 dbSNP
rs796125220 1957 dbSNP
rs1013626713 1960 dbSNP
rs1471231462 1969 dbSNP
rs1233659007 1972 dbSNP
rs534911830 1974 dbSNP
rs1440419071 1993 dbSNP
rs1259388903 1998 dbSNP
rs1211462269 2001 dbSNP
rs372313269 2003 dbSNP
rs950859366 2004 dbSNP
rs1224955222 2007 dbSNP
rs1350847210 2010 dbSNP
rs1283172536 2013 dbSNP
rs1445375676 2017 dbSNP
rs577723961 2018 dbSNP
rs1003532076 2022 dbSNP
rs749376549 2023 dbSNP
rs111754565 2035 dbSNP
rs1321444907 2035 dbSNP
rs1491434124 2035 dbSNP
rs199747306 2035 dbSNP
rs397955976 2035 dbSNP
rs60962125 2035 dbSNP
rs774097826 2035 dbSNP
rs1336407767 2036 dbSNP
rs1213942107 2037 dbSNP
rs1487874182 2045 dbSNP
rs1016832274 2047 dbSNP
rs768050329 2055 dbSNP
rs548440228 2057 dbSNP
rs1245608850 2066 dbSNP
rs921602365 2074 dbSNP
rs910019686 2075 dbSNP
rs678485 2077 dbSNP
rs1340300957 2082 dbSNP
rs1296821542 2094 dbSNP
rs987533224 2097 dbSNP
rs975649822 2099 dbSNP
rs922852039 2100 dbSNP
rs934265741 2104 dbSNP
rs1263101237 2115 dbSNP
rs913018341 2117 dbSNP
rs751814676 2118 dbSNP
rs945767082 2121 dbSNP
rs1166013280 2124 dbSNP
rs1041338707 2128 dbSNP
rs1421227395 2129 dbSNP
rs924292123 2132 dbSNP
rs935728267 2133 dbSNP
rs1054614790 2151 dbSNP
rs1246103385 2159 dbSNP
rs1218724825 2163 dbSNP
rs1469470565 2166 dbSNP
rs894263402 2172 dbSNP
rs1197637014 2173 dbSNP
rs575329872 2175 dbSNP
rs925759003 2179 dbSNP
rs1293922379 2182 dbSNP
rs1348200368 2184 dbSNP
rs1216734541 2185 dbSNP
rs1363248280 2204 dbSNP
rs1274839568 2205 dbSNP
rs369862968 2209 dbSNP
rs1438799550 2210 dbSNP
rs1396795472 2215 dbSNP
rs1276366288 2218 dbSNP
rs1326761428 2225 dbSNP
rs1465323432 2227 dbSNP
rs1398424846 2233 dbSNP
rs1433031669 2244 dbSNP
rs1013156927 2246 dbSNP
rs1172242559 2258 dbSNP
rs937276380 2260 dbSNP
rs867860116 2261 dbSNP
rs1189401386 2269 dbSNP
rs895157973 2270 dbSNP
rs1013627954 2273 dbSNP
rs1399325269 2275 dbSNP
rs1456151703 2278 dbSNP
rs1046811209 2293 dbSNP
rs1276004983 2299 dbSNP
rs1207051294 2306 dbSNP
rs138417866 2308 dbSNP
rs993432460 2324 dbSNP
rs761318904 2328 dbSNP
rs1016452351 2331 dbSNP
rs1373225595 2332 dbSNP
rs963500759 2348 dbSNP
rs996440715 2350 dbSNP
rs1371439302 2352 dbSNP
rs1300182898 2364 dbSNP
rs1176220935 2367 dbSNP
rs560918313 2368 dbSNP
rs765089517 2376 dbSNP
rs954936632 2379 dbSNP
rs679810 2383 dbSNP
rs1157509253 2385 dbSNP
rs1488214397 2392 dbSNP
rs1192148867 2393 dbSNP
rs1017433398 2398 dbSNP
rs1177430306 2399 dbSNP
rs1481132467 2407 dbSNP
rs964197239 2414 dbSNP
rs763007321 2418 dbSNP
rs541702413 2419 dbSNP
rs559707602 2427 dbSNP
rs533540612 2433 dbSNP
rs551473918 2434 dbSNP
rs1029801580 2436 dbSNP
rs967166391 2438 dbSNP
rs1281739107 2450 dbSNP
rs978893442 2457 dbSNP
rs955590513 2458 dbSNP
rs767853558 2459 dbSNP
rs1411960042 2460 dbSNP
rs1378117083 2470 dbSNP
rs925791239 2478 dbSNP
rs1159835744 2484 dbSNP
rs377299265 2488 dbSNP
rs563475074 2494 dbSNP
rs866772717 2497 dbSNP
rs977650216 2499 dbSNP
rs1055550638 2502 dbSNP
rs1297578764 2502 dbSNP
rs1214533448 2507 dbSNP
rs924238322 2511 dbSNP
rs865777527 2514 dbSNP
rs1159320404 2515 dbSNP
rs935662029 2518 dbSNP
rs1422912521 2521 dbSNP
rs1377013291 2526 dbSNP
rs1186238613 2531 dbSNP
rs1486896626 2533 dbSNP
rs917189300 2534 dbSNP
rs1216536582 2538 dbSNP
rs766475939 2546 dbSNP
rs949996000 2552 dbSNP
rs1262596513 2556 dbSNP
rs1239905259 2560 dbSNP
rs1321322566 2564 dbSNP
rs543288307 2565 dbSNP
rs1234902655 2566 dbSNP
rs1355863097 2582 dbSNP
rs1297444216 2591 dbSNP
rs1380482733 2605 dbSNP
rs1046408072 2611 dbSNP
rs190721997 2613 dbSNP
rs1376470769 2620 dbSNP
rs989865139 2622 dbSNP
rs1457021528 2630 dbSNP
rs1391830956 2632 dbSNP
rs1166652743 2646 dbSNP
rs149274455 2653 dbSNP
rs1307018874 2655 dbSNP
rs1419055191 2662 dbSNP
rs1193045859 2663 dbSNP
rs560463534 2672 dbSNP
rs1352421418 2677 dbSNP
rs1205781198 2683 dbSNP
rs1215082428 2684 dbSNP
rs1488237619 2694 dbSNP
rs899242854 2697 dbSNP
rs1215807274 2699 dbSNP
rs1486191904 2702 dbSNP
rs1277364365 2721 dbSNP
rs996384374 2723 dbSNP
rs1209796971 2725 dbSNP
rs1296292980 2729 dbSNP
rs1385665411 2742 dbSNP
rs1236090515 2745 dbSNP
rs1368165930 2748 dbSNP
rs1327441722 2750 dbSNP
rs1029145729 2751 dbSNP
rs1399138662 2762 dbSNP
rs750769084 2770 dbSNP
rs567638889 2774 dbSNP
rs182905259 2781 dbSNP
rs527633885 2783 dbSNP
rs373242697 2784 dbSNP
rs1009533150 2790 dbSNP
rs374545458 2795 dbSNP
rs1047681552 2797 dbSNP
rs1251241832 2805 dbSNP
rs757378034 2808 dbSNP
rs978543401 2809 dbSNP
rs1415005340 2838 dbSNP
rs1032757260 2843 dbSNP
rs772220406 2847 dbSNP
rs1005960228 2852 dbSNP
rs143429471 2859 dbSNP
rs147987584 2860 dbSNP
rs1451505185 2865 dbSNP
rs1368094468 2872 dbSNP
rs1304946212 2879 dbSNP
rs1357231385 2884 dbSNP
rs991310959 2888 dbSNP
rs917053524 2891 dbSNP
rs950017688 2894 dbSNP
rs983068271 2896 dbSNP
rs1168951911 2904 dbSNP
rs1434677417 2907 dbSNP
rs899889642 2908 dbSNP
rs11605890 2913 dbSNP
rs1175576061 2922 dbSNP
rs1454809920 2929 dbSNP
rs1232448970 2939 dbSNP
rs1179942055 2947 dbSNP
rs1331703738 2950 dbSNP
rs541320654 2954 dbSNP
rs1375479427 2958 dbSNP
rs1209934144 2959 dbSNP
rs761570250 2961 dbSNP
rs996897430 2964 dbSNP
rs940723549 2973 dbSNP
rs1234375781 2975 dbSNP
rs1469725873 2976 dbSNP
rs1029750614 2982 dbSNP
rs758728471 2988 dbSNP
rs559645962 2989 dbSNP
rs1032330863 2999 dbSNP
rs796770807 3002 dbSNP
rs957673177 3012 dbSNP
rs780607732 3034 dbSNP
rs1009153498 3038 dbSNP
rs990203555 3040 dbSNP
rs1439986495 3045 dbSNP
rs142645503 3049 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 53340.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaagaccGAGGUUCAGGUCa 5'
                 | :||:|||||| 
Target 5' -------CAUCAGGUCCAGa 3'
1 - 13
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000532692.1 | 3UTR | CAUCAGGUCCAGAUAUAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
27 hsa-miR-378f Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT463100 ZNF609 zinc finger protein 609 2 2
MIRT469371 REST RE1 silencing transcription factor 2 6
MIRT495441 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT513606 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT520414 TXNL1 thioredoxin like 1 2 4
MIRT525111 PRKD2 protein kinase D2 2 2
MIRT525979 SPA17 sperm autoantigenic protein 17 2 2
MIRT527002 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT529215 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT529835 ARGFX arginine-fifty homeobox 2 2
MIRT532300 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT537577 ESYT2 extended synaptotagmin 2 2 2
MIRT543140 AKT1 AKT serine/threonine kinase 1 2 2
MIRT554924 RAP1B RAP1B, member of RAS oncogene family 2 2
MIRT564970 WTAP WT1 associated protein 2 2
MIRT570115 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT652734 TGFB2 transforming growth factor beta 2 2 2
MIRT655948 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT655997 MYRF myelin regulatory factor 2 2
MIRT684875 P4HB prolyl 4-hydroxylase subunit beta 2 2
MIRT692969 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693737 ACACA acetyl-CoA carboxylase alpha 2 2
MIRT710991 PPARGC1B PPARG coactivator 1 beta 2 2
MIRT712247 RCC2 regulator of chromosome condensation 2 2 2
MIRT718602 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT723499 WDR33 WD repeat domain 33 2 2
MIRT725448 HIPK3 homeodomain interacting protein kinase 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378f Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378f Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-miR-378f Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-378f Erlotinib 176870 NSC718781 approved resistant High Head And Neck Squamous Cell Carcinoma cell line (HN6)
hsa-mir-378f Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-miR-378f Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-378f Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-378f Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-378f Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)

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